RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14552
(290 letters)
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 37.5 bits (85), Expect = 0.001
Identities = 20/165 (12%), Positives = 41/165 (24%), Gaps = 21/165 (12%)
Query: 50 QVYPDGIRHIGA---KNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPV 106
PD + D A + + L+ G + E+
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI- 238
Query: 107 SDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMAL 166
AVN + L F++ E + + + + +
Sbjct: 239 ------MDVFYFSTAVNPAKTRAFGAYNVLESFDL--EKN---ASIKRVPLPHSYYSVNV 287
Query: 167 SNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLA 211
S G + +G A + + Q +L G ++
Sbjct: 288 S--TDG----STVWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 32.9 bits (73), Expect = 0.039
Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQG 206
+ C A + +A+ ++ V + + ++ L+
Sbjct: 10 ISCHAWN--KDR----TQIAICPNNHEVHIYEKSGNKWVQVHELKE 49
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 32.4 bits (72), Expect = 0.062
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 10/97 (10%)
Query: 114 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILD----ECSETIQMESEVLCMALSNA 169
+ + + + D + + ++ C+A
Sbjct: 243 HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFD-- 300
Query: 170 PSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQG 206
G L +G N + + + + +K L G
Sbjct: 301 KKG----DKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 31.3 bits (69), Expect = 0.14
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 112 SDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPS 171
+ V+QR R + + +TG E +M E+ + +S
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVV-LDAKTG---ERLAKFEMGHEIDSINVS--QD 310
Query: 172 GEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMG 220
+ A+ D T+ + + L+ + L + + +MG
Sbjct: 311 EK--PLLYALSTGDKTLYIHDAESGEELRS--VNQLGHGPQVITTADMG 355
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 30.3 bits (66), Expect = 0.22
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200
+ ++ S G + L A+ + ++ +
Sbjct: 12 NKAITALSSS--ADG----KTLFSADAEGHINSWDISTGISNR 48
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 30.5 bits (67), Expect = 0.25
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 12/124 (9%)
Query: 74 SDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRCAV--NQRQI 127
D + +V ++++ + LQ P S E K ++ A N I
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 128 VIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADN 186
+ + +++++ ++G +Q + V+ +A++N S A G D
Sbjct: 324 LSGSKDRGVLFWDK--KSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378
Query: 187 TVRL 190
R+
Sbjct: 379 KARI 382
Score = 27.8 bits (60), Expect = 1.4
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 10/116 (8%)
Query: 112 SDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPS 171
D + +V ++++ + LQ P +G I + VL +A + +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT--CEVTYIGHKDFVLSVATT--QN 319
Query: 172 GEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSS 227
++ G D V + L LQG + S+ + + P +
Sbjct: 320 D----EYILSGSKDRGVLFWDKKSGNPLLM--LQGHRNSVISVAVANGSSLGPEYN 369
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 29.8 bits (65), Expect = 0.34
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQ 201
+ + + + PS L + D ++ + Q
Sbjct: 11 KDYISDIKII--PSK----SLLLITSWDGSLTVYKFDIQAKNVD 48
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 29.7 bits (65), Expect = 0.40
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200
S V + P + D T+++ D +
Sbjct: 17 RSPVTRVIFH--PVF----SVMVSASEDATIKVWDYETGDFER 53
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 28.6 bits (62), Expect = 0.99
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 118 VRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSR 177
++ A + V + L + G + S VL +S +
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT--PYG---ASIFQSKESSSVLSCDIS--VDD----K 319
Query: 178 FLAVGLADNTVRL 190
++ G D +
Sbjct: 320 YIVTGSGDKKATV 332
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 27.9 bits (61), Expect = 1.7
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 7/124 (5%)
Query: 65 TWKVSDKKESDKKKIVRCAVNQRQIVIALQGGR---LIYFEMHPVSDKKESDKKKIVRCA 121
++V KE ++ + A I +A R I + + V ++ ++V
Sbjct: 81 HYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNE 140
Query: 122 VNQRQIVIALQGGRLIYFEMHPETGILDECSETIQME-SEVLCMALSNAPSGEQMSRFLA 180
+ + I A + + + S +L ++ S R +
Sbjct: 141 ITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLS---AGRVQS 197
Query: 181 VGLA 184
V +
Sbjct: 198 VAVR 201
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 27.1 bits (58), Expect = 2.4
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200
V C+ + + + GL DNT+++ +C +
Sbjct: 18 VYCLQYDD--------QKIVSGLRDNTIKIWDKNTLECKR 49
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 26.7 bits (57), Expect = 3.9
Identities = 5/77 (6%), Positives = 19/77 (24%), Gaps = 9/77 (11%)
Query: 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217
++++ ++ N F D +++ D + + +
Sbjct: 14 DADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDN-ENPKDKSYSHFVHKSGLH 64
Query: 218 EMGASDPTSSDEPAGPV 234
+ D +
Sbjct: 65 HVDVLQAIERDAFELCL 81
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 26.6 bits (57), Expect = 4.2
Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 8/83 (9%)
Query: 118 VRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSR 177
+ N F++ + + + ++ S SG R
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFS--KSG----R 283
Query: 178 FLAVGLADNTVRLISLAPQDCLK 200
L G D + D
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAG 306
>d1hc1a3 b.1.18.3 (A:399-653) Arthropod hemocyanin, C-terminal
domain {Spiny lobster (Panulirus interruptus) [TaxId:
6735]}
Length = 255
Score = 25.6 bits (56), Expect = 8.1
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 56 IRHIGAKNTTWKVSDKKESDKKKIVRCAV------NQRQIVIALQGGRLIYFEMHPVSDK 109
+ + T+K++ +D +++ + + I + L R E+ K
Sbjct: 54 VHRLNHNEFTYKITMSNNNDGERLATFRIFLCPIEDNNGITLTLDEARWFCIELDKFFQK 113
Query: 110 KESDKKKIVR 119
S + I R
Sbjct: 114 VPSGPETIER 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.384
Gapped
Lambda K H
0.267 0.0379 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,000,778
Number of extensions: 43223
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 16
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.8 bits)