BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14554
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BFE|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
 pdb|3BFE|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
 pdb|3BFE|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
 pdb|3BFE|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
          Length = 262

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 28  DDDEPEFSSAMPLEEGDTF--FFAPRSLRNLVLVDEM 62
           D  EPE ++A+P +E DT       +SLR L L D +
Sbjct: 137 DRKEPELNTAIPGDERDTTSPLAMAKSLRKLTLGDAL 173


>pdb|3BFC|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 pdb|3BFC|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 pdb|3BFC|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 pdb|3BFC|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 pdb|3BFF|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 pdb|3BFF|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 pdb|3BFF|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 pdb|3BFF|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 pdb|3BFG|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
 pdb|3BFG|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
 pdb|3BFG|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
 pdb|3BFG|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
          Length = 262

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 28  DDDEPEFSSAMPLEEGDTF--FFAPRSLRNLVLVDEM 62
           D  EPE ++A+P +E DT       +SLR L L D +
Sbjct: 137 DRKEPELNTAIPGDERDTTSPLAMAKSLRKLTLGDAL 173


>pdb|3BFD|A Chain A, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
           Mutant From Citrobacter Sedlakii
 pdb|3BFD|B Chain B, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
           Mutant From Citrobacter Sedlakii
 pdb|3BFD|C Chain C, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
           Mutant From Citrobacter Sedlakii
 pdb|3BFD|D Chain D, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
           Mutant From Citrobacter Sedlakii
          Length = 263

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 28  DDDEPEFSSAMPLEEGDTF--FFAPRSLRNLVLVDEM 62
           D  EPE ++A+P +E DT       +SLR L L D +
Sbjct: 138 DRKEPELNTAIPGDERDTTSPLAMAKSLRKLTLGDAL 174


>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
          Cell-Cycle Regulation From Bartonella Henselae With
          Unknown Ligand
 pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
          Cell-Cycle Regulation From Bartonella Henselae With
          Unknown Ligand
 pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
          Cell-Cycle Regulation From Bartonella Henselae With
          Unknown Ligand
 pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
          Cell-Cycle Regulation From Bartonella Henselae With
          Unknown Ligand
          Length = 161

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 4  WEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQ 63
          + K IR  + S+  Y        +DDD   F   MP   G T     +  RNL+  D  +
Sbjct: 32 FAKLIRNEIPSVRVY--------EDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDAD-TE 82

Query: 64 SLSPILDC 71
          +L P++  
Sbjct: 83 TLFPVIKA 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,324,511
Number of Sequences: 62578
Number of extensions: 78475
Number of successful extensions: 170
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 7
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)