BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14554
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE +SLSPI+ C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 18 YLYQIAHLGDDDDEPEFSS----AMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKV 73
+ YQ LGDDD+E EFSS P + +F PR L NLVLV+ + S++P +DCKV
Sbjct: 372 HFYQFEKLGDDDEELEFSSDDFPTDPTASYNPVYFHPRPLENLVLVESIDSMNPQVDCKV 431
Query: 74 ADL 76
A+L
Sbjct: 432 ANL 434
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 18 YLYQIAHLGDDDDEPEFSS-------AMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILD 70
+ YQ LGDDD+E EF+S ++P E FF PR NL LV+ + SL+P++D
Sbjct: 369 HFYQFEKLGDDDEETEFNSENFPADLSVPCEP---VFFQPRGAENLNLVETLNSLNPLID 425
Query: 71 CKVADL 76
K+ +L
Sbjct: 426 SKIVNL 431
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1
PE=3 SV=2
Length = 1209
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 18 YLYQIAHLGDDDDEPEFSS----AMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKV 73
+ YQ LGDDD+E EF+S A P +F PR NL LV+ + SL+P++D KV
Sbjct: 369 HFYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPLVDSKV 428
Query: 74 ADL 76
++
Sbjct: 429 VNI 431
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 19 LYQIAHLGDDDDEPEF-SSAMPLEEGDTF---FFAPRSLRNLVLVDEMQSLSPILDCKVA 74
YQ LGDDD+E EF SS P++ + + +F PR NL LV+ + S++P++D KVA
Sbjct: 373 FYQFEKLGDDDEELEFFSSDFPVDPKEPYEPVYFYPRPTENLALVESIDSMNPLMDLKVA 432
Query: 75 DL 76
+L
Sbjct: 433 NL 434
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 19 LYQIAHLGDDDDEPEFSSAMPLEEGDTF------FFAPRSLRNLVLVDEMQSLSPILDCK 72
LY LGDDDD PE+ S E G F PR L NLV VDEM SL PILD K
Sbjct: 369 LYSFQKLGDDDDLPEYISTDYDENGAGRRRPQLPTFTPRPLDNLVQVDEMPSLDPILDAK 428
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 19 LYQIAHLGDDDDEPEFSSAMPLEEGDT------FFFAPRSLRNLVLVDEMQSLSPILDCK 72
LYQ L +DD E E+SS E G+ FF P+ LRNL+LVD + SL PI D
Sbjct: 369 LYQFQSLAEDDGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVPSLDPITDAH 428
Query: 73 VADL 76
V +L
Sbjct: 429 VVNL 432
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 19 LYQIAHLGDDDDEPEFSSAMPLEEGDT------FFFAPRSLRNLVLVDEMQSLSPILDCK 72
LYQ L +DD E E+SS E G+ FF P+ LRNL+LVD + SL PI D
Sbjct: 369 LYQFQSLAEDDGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVPSLDPITDAH 428
Query: 73 VADL 76
V +L
Sbjct: 429 VVNL 432
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3
SV=2
Length = 1288
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 17 SYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRS-LRNLVLVDEMQSLSPILDCKVAD 75
SYLYQ +L DD++E +S MP G PR+ L+NL++ D++ ++PIL ++ +
Sbjct: 383 SYLYQFENL-DDEEESMLTSVMP---GRRLIIEPRTVLKNLLVADKLALVNPILSSQLTE 438
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 19 LYQIAHLGDDDDEPE-------FSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDC 71
LYQ LGDD E E + S + E T F + L NL L+D +++LSPI D
Sbjct: 387 LYQFEKLGDDLTEGELVINSSDYESLNSVRESVTSF-KLKGLDNLALIDVLETLSPITDS 445
Query: 72 KVAD 75
K+ D
Sbjct: 446 KIID 449
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 19 LYQIAHLGDDDDEPEFSS----AMPLEEG-DTFFFAPRSLRNLVLVDEMQSLSPILD 70
LYQ +LG DDDE E +S A E G F R L+NL LV+E+ SL + D
Sbjct: 377 LYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEEIPSLYSLTD 433
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 19 LYQIAHLGDDDDEPEFSSAMPLEEGDT-FFFAPRS--------LRNLVLVDEMQSLSPIL 69
LY +GD+++E + A LE+ D +F PR+ L+NL + SLSPI+
Sbjct: 365 LYFFKSIGDEEEEGQ---AKRLEDKDGHLWFTPRNSCGTKMEELKNLEPTSHLSSLSPII 421
Query: 70 DCKVADL 76
D KV DL
Sbjct: 422 DFKVLDL 428
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 19 LYQIAHLGDDDDEPEFSSAMPLEEGDTF-------FFAPRSLRNLVLVDEMQSLSPILD 70
YQ LGDD++ S + F F L NL LVD M++L+PI D
Sbjct: 362 FYQFEKLGDDNNNTTLQSCNFSDYNSIFELDISKRSFKVAGLENLALVDIMETLNPITD 420
>sp|P40144|ADCY5_RABIT Adenylate cyclase type 5 OS=Oryctolagus cuniculus GN=ADCY5 PE=1
SV=1
Length = 1264
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 26 GDDDDEPEFSSAMPLEEGDTFFFAPRS 52
GDDDDEP S PL G F F +S
Sbjct: 78 GDDDDEPPLSGDDPLAGGFGFSFRSKS 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,414,975
Number of Sequences: 539616
Number of extensions: 1028230
Number of successful extensions: 2092
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 18
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)