Query psy14554
Match_columns 78
No_of_seqs 102 out of 143
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:50:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1898|consensus 99.7 5.2E-18 1.1E-22 144.0 3.0 66 11-78 350-415 (1205)
2 PF10433 MMS1_N: Mono-function 97.1 0.00019 4.2E-09 55.9 1.5 38 11-77 274-311 (504)
3 KOG1897|consensus 94.4 0.029 6.3E-07 49.2 2.4 43 11-77 323-365 (1096)
4 cd05168 PI4Kc_III_beta Phospho 30.3 50 0.0011 25.1 2.5 23 6-28 16-42 (293)
5 PF05199 GMC_oxred_C: GMC oxid 29.9 54 0.0012 20.6 2.3 47 4-61 76-122 (144)
6 PF10305 Fmp27_SW: RNA pol II 28.0 32 0.0007 22.1 1.0 13 2-14 12-24 (103)
7 PHA02414 hypothetical protein 27.8 8.6 0.00019 25.9 -1.7 27 3-29 47-73 (111)
8 COG1780 NrdI Protein involved 25.1 26 0.00057 24.6 0.2 18 13-30 101-118 (141)
9 KOG0903|consensus 21.3 47 0.001 29.3 1.0 26 3-28 565-597 (847)
10 PF12337 DUF3637: Protein of u 17.0 58 0.0013 20.0 0.5 16 44-59 29-44 (67)
No 1
>KOG1898|consensus
Probab=99.70 E-value=5.2e-18 Score=143.99 Aligned_cols=66 Identities=44% Similarity=0.682 Sum_probs=58.7
Q ss_pred hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccCC
Q psy14554 11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLGS 78 (78)
Q Consensus 11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~~ 78 (78)
.+|||||.||||++||+|||+ +++.++.+.+++++|.||.||||+++++++||+|++|++|.|.+|
T Consensus 350 ~sE~~n~~lyq~~~LG~~~~~--~s~~~~~~~~~~~~f~p~~l~nL~~~~~i~sl~p~~d~~I~~~~n 415 (1205)
T KOG1898|consen 350 ASEFGNHRLYQFEKLGEEDDD--FSNAMTSEEGKSVFFEPRILKNLSPVSSVESLSPLLDISIGDDSN 415 (1205)
T ss_pred hhhccCcceeehhhcCCCccc--hhhhcccccCcceeccccccccccchhhhhccCccceeEeeccCc
Confidence 689999999999999977754 777776655689999999999999999999999999999998764
No 2
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=97.14 E-value=0.00019 Score=55.92 Aligned_cols=38 Identities=34% Similarity=0.339 Sum_probs=27.8
Q ss_pred hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccC
Q psy14554 11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77 (78)
Q Consensus 11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~ 77 (78)
.|++||+.||||. ..+|.++|++.+++||+|+.|.+..
T Consensus 274 gs~~gds~l~~~~-----------------------------~~~l~~~~~~~N~~Pi~D~~v~~~~ 311 (504)
T PF10433_consen 274 GSEFGDSQLLQIS-----------------------------LSNLEVLDSLPNWGPIVDFCVVDSS 311 (504)
T ss_dssp EESSS-EEEEEEE-----------------------------SESEEEEEEE----SEEEEEEE-TS
T ss_pred EEecCCcEEEEEe-----------------------------CCCcEEEEeccCcCCccceEEeccc
Confidence 5899999999998 3588899999999999999998753
No 3
>KOG1897|consensus
Probab=94.36 E-value=0.029 Score=49.22 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=32.3
Q ss_pred hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccC
Q psy14554 11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77 (78)
Q Consensus 11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~ 77 (78)
.|+|||| |+.+|+.+.|. .| -+.+++++.+|.||.||+|.|+-
T Consensus 323 GS~~gdS---qLi~L~~e~d~---gs------------------y~~ilet~~NLgPI~Dm~Vvd~d 365 (1096)
T KOG1897|consen 323 GSRFGDS---QLIKLNTEPDV---GS------------------YVVILETFVNLGPIVDMCVVDLD 365 (1096)
T ss_pred eccCCce---eeEEccccCCC---Cc------------------hhhhhhhcccccceeeEEEEecc
Confidence 4889999 88889965433 22 12367789999999999999864
No 4
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=30.26 E-value=50 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHhcccCCcee---eee-eecCCC
Q psy14554 6 KRIRKTMVSIFSYL---YQI-AHLGDD 28 (78)
Q Consensus 6 ~~~~~~sefGnh~L---YQF-e~LGdd 28 (78)
.|||+.|-||++.- |+| -|-|||
T Consensus 16 ~r~r~~s~~~~~~~~~~~~~i~K~gDD 42 (293)
T cd05168 16 ERIRKSSPYGHLKSWDLRSVIVKTGDD 42 (293)
T ss_pred HHhhhcCccCcCCCCCEEEEEEeCCCC
Confidence 69999999998843 433 345654
No 5
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=29.93 E-value=54 Score=20.64 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=24.8
Q ss_pred HHHHHHHhcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCcccccc
Q psy14554 4 WEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDE 61 (78)
Q Consensus 4 ~~~~~~~~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~ 61 (78)
|+.-++++.. +.+|.-==..+|.+.+.. . - -..++....+||.++|-
T Consensus 76 ~~~~~~~~~~-~~~H~~Gt~~mG~~~~~~-V--v-------D~~~rv~g~~nL~V~Da 122 (144)
T PF05199_consen 76 LECYIRQNVG-TSWHPSGTCRMGPDPDTS-V--V-------DPDLRVHGVRNLRVADA 122 (144)
T ss_dssp HHHHHHHHGE-ECSS-BETT-BTSSTTTT-S--B--------TTSBBTTSBSEEE-SG
T ss_pred hhhheeeccc-eecccccceeccccCCce-e--E-------CCCCCeeeeeeEEECCC
Confidence 5555666554 444555555666544320 0 0 12467779999999973
No 6
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=28.00 E-value=32 Score=22.13 Aligned_cols=13 Identities=54% Similarity=0.877 Sum_probs=9.9
Q ss_pred chHHHHHHHhccc
Q psy14554 2 TSWEKRIRKTMVS 14 (78)
Q Consensus 2 ~~~~~~~~~~sef 14 (78)
+||-+|||+.-.+
T Consensus 12 ~SWi~ri~~~k~~ 24 (103)
T PF10305_consen 12 TSWIRRIRKAKRT 24 (103)
T ss_pred HHHHHHHHHHHHH
Confidence 6999999875544
No 7
>PHA02414 hypothetical protein
Probab=27.82 E-value=8.6 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.8
Q ss_pred hHHHHHHHhcccCCceeeeeeecCCCC
Q psy14554 3 SWEKRIRKTMVSIFSYLYQIAHLGDDD 29 (78)
Q Consensus 3 ~~~~~~~~~sefGnh~LYQFe~LGddd 29 (78)
|..|+..-|||--.|..||+++|.+.-
T Consensus 47 slDKd~Av~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 47 SLDKDVAVNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred HhhhHhhhhHHHhhHHHHHHHHHHHHH
Confidence 556888889999999999999997543
No 8
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=25.13 E-value=26 Score=24.55 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=13.8
Q ss_pred ccCCceeeeeeecCCCCC
Q psy14554 13 VSIFSYLYQIAHLGDDDD 30 (78)
Q Consensus 13 efGnh~LYQFe~LGdddd 30 (78)
+||=-.||+||-+|..+|
T Consensus 101 k~~vPlLy~FEL~GT~~D 118 (141)
T COG1780 101 KCGVPLLYRFELLGTAED 118 (141)
T ss_pred HhCCCEEEEEeccCCHHH
Confidence 455567999999996554
No 9
>KOG0903|consensus
Probab=21.31 E-value=47 Score=29.25 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=17.9
Q ss_pred hHH---HHHHHhcccCCceee----eeeecCCC
Q psy14554 3 SWE---KRIRKTMVSIFSYLY----QIAHLGDD 28 (78)
Q Consensus 3 ~~~---~~~~~~sefGnh~LY----QFe~LGdd 28 (78)
.|+ .||||.|.||++-=+ =+-|-|||
T Consensus 565 ~W~~Kk~RIRktS~Yg~~pnWdL~SVIVKtGdD 597 (847)
T KOG0903|consen 565 DWAEKKARIRKTSPYGHLPNWDLRSVIVKTGDD 597 (847)
T ss_pred cHHHHHHHHhccCccccCCCcceEEEeeecCch
Confidence 464 589999999999533 34455644
No 10
>PF12337 DUF3637: Protein of unknown function (DUF3637) ; InterPro: IPR022098 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF00073 from PFAM, PF08935 from PFAM.
Probab=17.01 E-value=58 Score=19.96 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=11.5
Q ss_pred CeeeeecCCCCCcccc
Q psy14554 44 DTFFFAPRSLRNLVLV 59 (78)
Q Consensus 44 ~~~~F~Pr~L~NL~lv 59 (78)
.-+.|+||+|--|.-+
T Consensus 29 sdfafkprpla~llrl 44 (67)
T PF12337_consen 29 SDFAFKPRPLAPLLRL 44 (67)
T ss_pred ccccccCCcCchhhcc
Confidence 3478999988766544
Done!