Query psy14554
Match_columns 78
No_of_seqs 102 out of 143
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:50:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 98.2 9.9E-07 3.4E-11 74.3 3.4 44 11-77 343-386 (1158)
2 2xpn_B SPT6, chromatin structu 51.9 6.8 0.00023 19.4 1.3 14 15-28 1-14 (26)
3 1hji_B NUN-protein; bacterioph 49.7 6 0.0002 19.5 0.9 9 2-10 13-21 (26)
4 3qrx_B Melittin; calcium-bindi 17.0 48 0.0016 16.2 0.9 9 2-10 17-25 (26)
5 2b9i_C MSG5, tyrosine-protein 12.7 53 0.0018 16.0 0.3 9 51-59 7-15 (26)
6 4egx_A Kinesin-like protein KI 12.7 68 0.0023 21.5 1.0 10 14-23 163-172 (184)
7 4ain_A Glycine betaine transpo 10.7 89 0.003 24.9 1.2 14 23-36 85-98 (539)
8 2mlp_A MCBA propeptide; leader 10.0 35 0.0012 16.8 -0.9 6 10-15 4-9 (27)
9 2i1s_A Hypothetical protein; m 9.2 1.5E+02 0.0053 19.5 1.8 21 6-26 39-59 (188)
10 1jek_B ENV polyprotein; envelo 8.8 1.4E+02 0.0046 15.6 1.1 9 3-11 4-12 (36)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.15 E-value=9.9e-07 Score=74.27 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=37.5
Q ss_pred hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccC
Q psy14554 11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77 (78)
Q Consensus 11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~ 77 (78)
.||+|||+||||+.+|+|++ ..+.++|++.|++||+|++|.|..
T Consensus 343 gS~~Gds~l~~~~~~~~~~~-----------------------~~~~~~~~~~N~~PI~D~~v~d~~ 386 (1158)
T 3ei3_A 343 GSRLGDSQLVKLNVDSNEQG-----------------------SYVVAMETFTNLGPIVDMCVVDLE 386 (1158)
T ss_dssp ECSSSCEEEEEECSSCCTTS-----------------------CCEEEEEEECCCCSEEEEEEECTT
T ss_pred EEecCCcEEEEEecCCCCcc-----------------------ceEEeEeeecCcCCceeEEEEccC
Confidence 58999999999999996541 126789999999999999999864
No 2
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=51.90 E-value=6.8 Score=19.39 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=12.1
Q ss_pred CCceeeeeeecCCC
Q psy14554 15 IFSYLYQIAHLGDD 28 (78)
Q Consensus 15 Gnh~LYQFe~LGdd 28 (78)
|+|.+|.+-.+|++
T Consensus 1 g~slFyEIFGtG~E 14 (26)
T 2xpn_B 1 GSHMFFEIFGTGEE 14 (26)
T ss_pred CCcEEEEEecCCce
Confidence 78999999999954
No 3
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=49.72 E-value=6 Score=19.45 Aligned_cols=9 Identities=56% Similarity=1.014 Sum_probs=7.0
Q ss_pred chHHHHHHH
Q psy14554 2 TSWEKRIRK 10 (78)
Q Consensus 2 ~~~~~~~~~ 10 (78)
..|||||.-
T Consensus 13 arwekriay 21 (26)
T 1hji_B 13 ARWEKRIAY 21 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 369999964
No 4
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=17.04 E-value=48 Score=16.24 Aligned_cols=9 Identities=56% Similarity=0.929 Sum_probs=7.2
Q ss_pred chHHHHHHH
Q psy14554 2 TSWEKRIRK 10 (78)
Q Consensus 2 ~~~~~~~~~ 10 (78)
-||-||-|+
T Consensus 17 iSWiK~kr~ 25 (26)
T 3qrx_B 17 ISWIKRKRQ 25 (26)
T ss_pred HHHHHHHhc
Confidence 489999875
No 5
>2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae}
Probab=12.74 E-value=53 Score=16.02 Aligned_cols=9 Identities=44% Similarity=0.552 Sum_probs=5.0
Q ss_pred CCCCCcccc
Q psy14554 51 RSLRNLVLV 59 (78)
Q Consensus 51 r~L~NL~lv 59 (78)
|.-+||++.
T Consensus 7 rntknls~~ 15 (26)
T 2b9i_C 7 RNTKNLSLD 15 (26)
T ss_pred cCcccceee
Confidence 455666653
No 6
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=12.67 E-value=68 Score=21.54 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=7.5
Q ss_pred cCCceeeeee
Q psy14554 14 SIFSYLYQIA 23 (78)
Q Consensus 14 fGnh~LYQFe 23 (78)
||++|+|.|-
T Consensus 163 lG~~h~Frfn 172 (184)
T 4egx_A 163 MGKSHVFRFN 172 (184)
T ss_dssp ETTTEEEEEE
T ss_pred ECCCCEEEEC
Confidence 7788888774
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=10.72 E-value=89 Score=24.86 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=11.1
Q ss_pred eecCCCCCCCceec
Q psy14554 23 AHLGDDDDEPEFSS 36 (78)
Q Consensus 23 e~LGdddd~~~~sS 36 (78)
-+||.||+++||+.
T Consensus 85 IrLG~~d~kPefS~ 98 (539)
T 4ain_A 85 IRLGRIDEAPEFRT 98 (539)
T ss_dssp CBSSCTTCCCSSCH
T ss_pred eecCCCCCCCCCcc
Confidence 36998888898875
No 8
>2mlp_A MCBA propeptide; leader peptide, antibiotic; NMR {Escherichia coli} SCOP: j.36.3.1
Probab=10.05 E-value=35 Score=16.76 Aligned_cols=6 Identities=17% Similarity=-0.374 Sum_probs=2.8
Q ss_pred HhcccC
Q psy14554 10 KTMVSI 15 (78)
Q Consensus 10 ~~sefG 15 (78)
|.||||
T Consensus 4 kasefg 9 (27)
T 2mlp_A 4 KASEFG 9 (27)
T ss_dssp CSTTHH
T ss_pred ccccce
Confidence 345554
No 9
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=9.18 E-value=1.5e+02 Score=19.50 Aligned_cols=21 Identities=19% Similarity=0.001 Sum_probs=16.8
Q ss_pred HHHHHhcccCCceeeeeeecC
Q psy14554 6 KRIRKTMVSIFSYLYQIAHLG 26 (78)
Q Consensus 6 ~~~~~~sefGnh~LYQFe~LG 26 (78)
.-|.....+.|-|||+|.--|
T Consensus 39 ~vIq~afgw~~~HL~~F~~~~ 59 (188)
T 2i1s_A 39 KAIQAVMDWEDYHLHEFEMVN 59 (188)
T ss_dssp HHHHHHTTCCCCSCEEEEEEC
T ss_pred HHHHHHhCCCCCEeeEEEECC
Confidence 457788889999999998533
No 10
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=8.85 E-value=1.4e+02 Score=15.61 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=6.5
Q ss_pred hHHHHHHHh
Q psy14554 3 SWEKRIRKT 11 (78)
Q Consensus 3 ~~~~~~~~~ 11 (78)
.|||+|...
T Consensus 4 qWereI~~~ 12 (36)
T 1jek_B 4 QWEEEIEQH 12 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 589988653
Done!