Query psy14554
Match_columns 78
No_of_seqs 102 out of 143
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 22:50:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14554.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14554hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nysa1 b.136.1.2 (A:3-119) Un 28.4 13 0.00097 22.6 1.8 15 6-20 23-38 (117)
2 d2otma1 d.79.1.1 (A:2-153) Hyp 26.1 12 0.00088 22.4 1.3 12 1-12 1-12 (152)
3 d2csoa1 a.4.5.31 (A:8-122) Ple 13.3 30 0.0022 20.2 0.9 12 15-26 97-108 (115)
4 d2je8a1 b.1.4.1 (A:220-330) Be 12.9 37 0.0027 18.6 1.2 10 14-23 83-92 (111)
5 d1q32a2 d.136.1.3 (A:302-538) 12.7 30 0.0022 22.8 0.8 12 16-27 3-14 (237)
6 d1g7sa1 b.43.3.1 (A:228-328) I 9.5 48 0.0035 19.3 1.0 29 46-74 52-84 (101)
7 d1i0ra_ b.45.1.2 (A:) Ferric r 7.7 23 0.0017 21.3 -1.2 16 7-22 116-131 (161)
8 d1gtra1 b.53.1.2 (A:339-547) G 7.6 43 0.0031 21.3 0.1 8 19-26 177-184 (209)
9 d1sfua_ a.4.5.19 (A:) 34L {Yab 7.0 28 0.0021 19.4 -0.9 11 16-26 42-52 (70)
10 d1hc1a2 a.86.1.1 (A:136-398) A 6.9 45 0.0033 22.3 -0.1 15 2-16 155-169 (263)
No 1
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=28.45 E-value=13 Score=22.63 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=11.5
Q ss_pred HHHHHhcc-cCCceee
Q psy14554 6 KRIRKTMV-SIFSYLY 20 (78)
Q Consensus 6 ~~~~~~se-fGnh~LY 20 (78)
+++.++.. -|+||||
T Consensus 23 ~~v~~~G~Lpg~hHfy 38 (117)
T d2nysa1 23 GEVAATGRLPGDHHFF 38 (117)
T ss_dssp HHHHHHSSCCTTCCEE
T ss_pred HHHHHcCCCCCCcEEE
Confidence 56777874 5999987
No 2
>d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]}
Probab=26.12 E-value=12 Score=22.43 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=10.0
Q ss_pred CchHHHHHHHhc
Q psy14554 1 MTSWEKRIRKTM 12 (78)
Q Consensus 1 ~~~~~~~~~~~s 12 (78)
|++||.|+++.+
T Consensus 1 m~~~e~~l~~lg 12 (152)
T d2otma1 1 MNTPESRLVAAG 12 (152)
T ss_dssp CCCHHHHHHHTT
T ss_pred CCCHHHHHHHcC
Confidence 899999998743
No 3
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.29 E-value=30 Score=20.15 Aligned_cols=12 Identities=17% Similarity=0.168 Sum_probs=9.4
Q ss_pred CCceeeeeeecC
Q psy14554 15 IFSYLYQIAHLG 26 (78)
Q Consensus 15 Gnh~LYQFe~LG 26 (78)
+++.||+|..-|
T Consensus 97 ~~~~lYrF~~~g 108 (115)
T d2csoa1 97 NPDAFYYFPDSG 108 (115)
T ss_dssp CTTCEEECSSSC
T ss_pred CCCCEEEeCCCC
Confidence 567899998655
No 4
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=12.86 E-value=37 Score=18.55 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=8.8
Q ss_pred cCCceeeeee
Q psy14554 14 SIFSYLYQIA 23 (78)
Q Consensus 14 fGnh~LYQFe 23 (78)
+|+-+||+++
T Consensus 83 ~g~P~LY~~~ 92 (111)
T d2je8a1 83 WGTPTLYDFS 92 (111)
T ss_dssp SSCBCCEEEE
T ss_pred CCCCceEEEE
Confidence 7899999986
No 5
>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.72 E-value=30 Score=22.77 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=10.5
Q ss_pred CceeeeeeecCC
Q psy14554 16 FSYLYQIAHLGD 27 (78)
Q Consensus 16 nh~LYQFe~LGd 27 (78)
-|+|+|.-++|-
T Consensus 3 ~h~l~Q~SSIG~ 14 (237)
T d1q32a2 3 KHYLCQTSSIGT 14 (237)
T ss_dssp EEEEEECSBBCC
T ss_pred CceEEEeccccC
Confidence 389999999994
No 6
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.55 E-value=48 Score=19.25 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=18.0
Q ss_pred eeeecCCCCCccccc----cccCCCccccceec
Q psy14554 46 FFFAPRSLRNLVLVD----EMQSLSPILDCKVA 74 (78)
Q Consensus 46 ~~F~Pr~L~NL~lvd----~l~SLsPI~D~kV~ 74 (78)
.-|+|++|+.+.... .++...|-+..||.
T Consensus 52 aLl~p~pl~emr~~~~~~~~vke~~aa~gVkI~ 84 (101)
T d1g7sa1 52 SLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV 84 (101)
T ss_dssp EEEEECCCC----CCCSEEECSEEESSEEEEEE
T ss_pred cccCCcchhhhhccccCCeECcEEeCCCceEEE
Confidence 568999999987542 46666777777775
No 7
>d1i0ra_ b.45.1.2 (A:) Ferric reductase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.71 E-value=23 Score=21.25 Aligned_cols=16 Identities=13% Similarity=-0.072 Sum_probs=11.2
Q ss_pred HHHHhcccCCceeeee
Q psy14554 7 RIRKTMVSIFSYLYQI 22 (78)
Q Consensus 7 ~~~~~sefGnh~LYQF 22 (78)
|+.+.-|.|||.||=-
T Consensus 116 ~v~~~~~~GDH~l~ig 131 (161)
T d1i0ra_ 116 KVVKECDVGTHTLFVG 131 (161)
T ss_dssp EEEEEEECSSEEEEEE
T ss_pred EEEEEEeCCCeEEEEE
Confidence 3445568999998844
No 8
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain {Escherichia coli [TaxId: 562]}
Probab=7.58 E-value=43 Score=21.31 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=7.4
Q ss_pred eeeeeecC
Q psy14554 19 LYQIAHLG 26 (78)
Q Consensus 19 LYQFe~LG 26 (78)
-||||..|
T Consensus 177 ~~QFER~G 184 (209)
T d1gtra1 177 AFQFEREG 184 (209)
T ss_dssp EEEETTTE
T ss_pred eEEEEEee
Confidence 59999999
No 9
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=7.04 E-value=28 Score=19.35 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=9.2
Q ss_pred CceeeeeeecC
Q psy14554 16 FSYLYQIAHLG 26 (78)
Q Consensus 16 nh~LYQFe~LG 26 (78)
|.+||..++-|
T Consensus 42 Nr~LY~L~~~G 52 (70)
T d1sfua_ 42 NQQLYKLQKED 52 (70)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 67899988888
No 10
>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster (Panulirus interruptus) [TaxId: 6735]}
Probab=6.86 E-value=45 Score=22.30 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.0
Q ss_pred chHHHHHHHhcccCC
Q psy14554 2 TSWEKRIRKTMVSIF 16 (78)
Q Consensus 2 ~~~~~~~~~~sefGn 16 (78)
..||+||++.-..|-
T Consensus 155 ~~~e~Ri~daId~G~ 169 (263)
T d1hc1a2 155 EITESRIHEAIDHGY 169 (263)
T ss_dssp HHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHcCc
Confidence 479999999877763
Done!