Your job contains 1 sequence.
>psy14554
MTSWEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVD
EMQSLSPILDCKVADLGS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14554
(78 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 268 4.7e-22 1
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 268 4.9e-22 1
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 269 5.9e-22 1
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 268 7.5e-22 1
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 268 7.5e-22 1
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 268 7.5e-22 1
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 268 7.5e-22 1
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 268 7.6e-22 1
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 258 8.9e-21 1
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd... 150 2.9e-09 1
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat... 123 2.1e-06 1
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat... 123 2.1e-06 1
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer... 118 7.3e-06 1
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 118 8.1e-06 1
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 118 8.1e-06 1
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 268 (99.4 bits), Expect = 4.7e-22, P = 4.7e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 137 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 196
Query: 78 S 78
+
Sbjct: 197 N 197
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 268 (99.4 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 60 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 119
Query: 78 S 78
+
Sbjct: 120 N 120
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 269 (99.8 bits), Expect = 5.9e-22, P = 5.9e-22
Identities = 49/61 (80%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE +SLSPI+ C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 268 (99.4 bits), Expect = 7.6e-22, P = 7.6e-22
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 258 (95.9 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 48/61 (78%), Positives = 56/61 (91%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
YLYQIAHLGDDDDEPEFSSAMPLEEG+TFFFAPR+L+NLVLVDE+ S +PI+ +VADL
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGETFFFAPRALKNLVLVDELPSFAPIITSQVADLA 416
Query: 78 S 78
+
Sbjct: 417 N 417
>WB|WBGene00019323 [details] [associations]
symbol:teg-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
InParanoid:O44985 NextBio:875387 Uniprot:O44985
Length = 1220
Score = 150 (57.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 19 LYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADL 76
LYQIA LG+ DD+ EFSSAM E D FF P L++L+ +D M SLSP+ D + D+
Sbjct: 359 LYQIASLGEGDDD-EFSSAMGFGENDAAFFEPHELKSLIPIDSMDSLSPLTDAVIGDI 415
>TAIR|locus:2100616 [details] [associations]
symbol:SAP130a "spliceosome-associated protein 130 a"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 123 (48.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 19 LYQIAHLGDDDD-EPEFSSAMPLEEG-DTFFFAPRSLRNLVLVDEMQSLSPILDCKVADL 76
LYQ +G++ D E S+ M EEG FF PR L+NLV +D+++SL P++D KV ++
Sbjct: 354 LYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNI 413
>TAIR|locus:2100646 [details] [associations]
symbol:SAP130b "spliceosome-associated protein 130 b"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 123 (48.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 19 LYQIAHLGDDDD-EPEFSSAMPLEEG-DTFFFAPRSLRNLVLVDEMQSLSPILDCKVADL 76
LYQ +G++ D E S+ M EEG FF PR L+NLV +D+++SL P++D KV ++
Sbjct: 354 LYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNI 413
>ASPGD|ASPL0000031473 [details] [associations]
symbol:AN5452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
OrthoDB:EOG4FR40R Uniprot:Q5B1X8
Length = 1209
Score = 118 (46.6 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 18 YLYQIAHLGDDDDEPEFSS----AMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKV 73
+ YQ LGDDD+E EF+S A P +F PR NL LV+ + SL+P++D KV
Sbjct: 369 HFYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPLVDSKV 428
Query: 74 ADL 76
++
Sbjct: 429 VNI 431
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 118 (46.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVAD 75
Y YQ + +GDD+ + +S PL + F L+NL LVD++ SLSPILD K+ D
Sbjct: 389 YFYQFSGIGDDNKQFMCTSNHPLGKNAIIAFKTNKLKNLYLVDQIYSLSPILDMKIID 446
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 118 (46.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVAD 75
Y YQ + +GDD+ + +S PL + F L+NL LVD++ SLSPILD K+ D
Sbjct: 389 YFYQFSGIGDDNKQFMCTSNHPLGKNAIIAFKTNKLKNLYLVDQIYSLSPILDMKIID 446
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 78 78 0.00091 102 3 11 22 0.38 29
29 0.38 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 566 (60 KB)
Total size of DFA: 108 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.18u 0.11s 9.29t Elapsed: 00:00:00
Total cpu time: 9.18u 0.11s 9.29t Elapsed: 00:00:00
Start: Thu Aug 15 14:36:51 2013 End: Thu Aug 15 14:36:51 2013