RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14554
         (78 letters)



>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
           repair, xeroderma pigmentosum, cytoplasm, DNA repair;
           HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
           3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
           3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
           2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
          Length = 1158

 Score = 28.4 bits (62), Expect = 0.18
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 41  EEGDTFFF-----APRSLRNLVLVDEMQSLSPILDCKVADLGS 78
             GD+        +      +V ++   +L PI+D  V DL  
Sbjct: 345 RLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLER 387


>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor
          and osmosensor, secondary TRAN sodium coupled
          transport; HET: FLC CM5; 3.10A {Corynebacterium
          glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
          Length = 539

 Score = 27.3 bits (61), Expect = 0.45
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 25 LGDDDDEPEFS 35
          LG  D+ PEF 
Sbjct: 87 LGRIDEAPEFR 97


>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural
          genomics, riken structural genomics/proteomics
          initiative, RSGI; HET: TLA; 1.60A {Thermus
          thermophilus} SCOP: d.14.1.11 d.58.11.2
          Length = 191

 Score = 24.1 bits (52), Expect = 5.9
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 5  EKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPL 40
          E R  +   +  +Y   + +   DD EP  ++  P+
Sbjct: 39 ENREPEATHNGHAYKIGLLYRFSDDGEPSGTAGRPI 74


>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
           ATP binding, phosphoryla transferase; HET: ATP; 1.75A
           {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
          Length = 289

 Score = 23.4 bits (51), Expect = 9.5
 Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 54  RN-LVLVDEMQSLSPILDCKVADLG 77
           +N L++ +E +        K++D G
Sbjct: 142 KNILLIREEDRKTGNPPFIKLSDPG 166


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,223,658
Number of extensions: 59391
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 6
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)