RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14554
         (78 letters)



>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053,
          N-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 123

 Score = 25.9 bits (57), Expect = 0.37
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 5  EKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPL 40
          E R  +   +  +Y   + +   DD EP  ++  P+
Sbjct: 38 ENREPEATHNGHAYKIGLLYRFSDDGEPSGTAGRPI 73


>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
           {Escherichia coli [TaxId: 562]}
          Length = 133

 Score = 22.6 bits (48), Expect = 6.4
 Identities = 5/29 (17%), Positives = 11/29 (37%)

Query: 21  QIAHLGDDDDEPEFSSAMPLEEGDTFFFA 49
            +A   + +   +       ++GD  FF 
Sbjct: 80  PVAKFLNAEIIEDILDRTAAQDGDMIFFG 108


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 22.8 bits (49), Expect = 6.8
 Identities = 4/39 (10%), Positives = 12/39 (30%)

Query: 5   EKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEG 43
             + +  ++  F +L   A + D   +         +  
Sbjct: 333 LSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYA 371


>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 208

 Score = 22.2 bits (47), Expect = 8.9
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 27 DDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILD 70
          D +D+P F   +     + FF    S+    LV+++++      
Sbjct: 2  DREDDPNFFKMV-----EGFFDRGASIVEDKLVEDLKTRQTQEQ 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,015
Number of extensions: 11290
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 7
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)