BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14557
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V38|A Chain A, Solution Structure Of The Sterile Alpha Motif (Sam)
          Domain Of Mouse Samsn1
          Length = 78

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          +E+ S  +LNGYE L+   +IKE  L  L I +PE RA++L+A + +
Sbjct: 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESL 71


>pdb|2KSO|B Chain B, Epha2:ship2 Sam:sam Complex
          Length = 76

 Score = 35.8 bits (81), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQV 56
          +A+ +E  +E +   V NG++DLE   +I EEDL    + +P H+  +L  +Q+
Sbjct: 24 RAIGLERYEEGL---VHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQL 74


>pdb|2K4P|A Chain A, Solution Structure Of Ship2-Sam
          Length = 86

 Score = 35.8 bits (81), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQV 56
          +A+ +E  +E +   V NG++DLE   +I EEDL    + +P H+  +L  +Q+
Sbjct: 34 RAIGLERYEEGL---VHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQL 84


>pdb|1B0X|A Chain A, The Crystal Structure Of An Eph Receptor Sam Domain
          Reveals A Mechanism For Modular Dimerization
          Length = 94

 Score = 33.5 bits (75), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          +A+ M+  K++   F   GY  LE+   + ++DL  + I    H+ KIL++VQ M
Sbjct: 34 QAIKMDRYKDN---FTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAM 85


>pdb|3SEI|A Chain A, Crystal Structure Of Caskin1 Tandem Sams
 pdb|3SEI|B Chain B, Crystal Structure Of Caskin1 Tandem Sams
          Length = 149

 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 12  EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
           ++  V V NGYE+++   +I  EDL  + I    H+ K++ AV+ + E
Sbjct: 93  QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAE 140



 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 17 FVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAV 54
          F+  GY DL +   +  EDL  + +  P HR KI A +
Sbjct: 29 FISAGY-DLPTISRMTPEDLTAIGVTKPGHRKKIAAEI 65


>pdb|3H8M|A Chain A, Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7)
 pdb|3H8M|B Chain B, Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7)
          Length = 90

 Score = 33.1 bits (74), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          +A+ ME  K++   F   GY  LES   +  ED+  L I    H+ KI++++Q M
Sbjct: 33 QAIKMERYKDN---FTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTM 84


>pdb|3SEN|A Chain A, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|B Chain B, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|C Chain C, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|D Chain D, Structure Of Caskin1 Tandem Sams
          Length = 157

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 12  EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
           ++  V V NGYE+++   +I  EDL  + I    H+ K++ AV+ + E
Sbjct: 101 QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAE 148



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 17 FVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAV 54
          F+  GY DL +   +  EDL  + +  P HR KI A +
Sbjct: 37 FISAGY-DLPTISRMTPEDLTAIGVTKPGHRKKIAAEI 73


>pdb|2LMR|A Chain A, Solution Structure Of The First Sam Domain Of Odin
          Length = 101

 Score = 33.1 bits (74), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 11 KEHMSVFVLNGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQVM 57
          +++ S  +LNG++D+       ++E+DL  + I +P+HR K+L A + +
Sbjct: 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSL 90


>pdb|2KIV|A Chain A, Aida-1 Sam Domain Tandem
          Length = 148

 Score = 31.6 bits (70), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 17 FVLNGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQVM 57
           + NG++++++     ++++DL  + ILN  HR +IL A+Q++
Sbjct: 33 LMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 75


>pdb|2EAM|A Chain A, Solution Structure Of The N-Terminal Sam-Domain Of A
          Human Putative 47 Kda Protein
          Length = 80

 Score = 29.3 bits (64), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 20 NGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQVM 57
          NG+++++      ++++DL  + ILN  HR +IL A+Q++
Sbjct: 34 NGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 73


>pdb|3HIL|A Chain A, Sam Domain Of Human Ephrin Type-A Receptor 1 (Epha1)
 pdb|3HIL|B Chain B, Sam Domain Of Human Ephrin Type-A Receptor 1 (Epha1)
 pdb|3KKA|A Chain A, Co-Crystal Structure Of The Sam Domains Of Epha1 And
          Epha2
 pdb|3KKA|B Chain B, Co-Crystal Structure Of The Sam Domains Of Epha1 And
          Epha2
          Length = 82

 Score = 29.3 bits (64), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
          K ++  F   G + +E   E+  EDL  + I  P H+ +IL ++Q
Sbjct: 36 KRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQ 80


>pdb|2KE7|A Chain A, Nmr Structure Of The First Sam Domain From Aida1
          Length = 103

 Score = 29.3 bits (64), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 20 NGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQVM 57
          NG+++++      ++++DL  + ILN  HR +IL A+Q++
Sbjct: 44 NGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,023,150
Number of Sequences: 62578
Number of extensions: 274188
Number of successful extensions: 806
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 19
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)