BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14557
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60925|PFD1_HUMAN Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2
Length = 122
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
KAF ELQ K++DT+QK+K+ DIQ+E + K H LT TEI L TN YE VGRMFI
Sbjct: 11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70
Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKA 310
+ L +K K EEKIK++E +K+
Sbjct: 71 QSKEAIHSQLLEKQKIAEEKIKELEQKKS 99
>sp|Q5RAM7|PFD1_PONAB Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1
Length = 122
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
KAF ELQ K++DT+QK+K+ DIQ+E + K H LT TEI L TN YE VGRMFI
Sbjct: 11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70
Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKA 310
+ L +K K EEKIK++E +K+
Sbjct: 71 QSKEAIHNQLLEKQKIAEEKIKELEQKKS 99
>sp|Q3SZE2|PFD1_BOVIN Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1
Length = 122
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
KAF ELQ K++DT+QK+K+ D+Q+E + K H LT TEI L TN YE VGRMFI
Sbjct: 11 KAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70
Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
+ L +K K EEKIK++E +K+ +
Sbjct: 71 QSKEAIHNQLLEKQKIAEEKIKELEQKKSYL 101
>sp|Q9CWM4|PFD1_MOUSE Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=2 SV=1
Length = 122
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
KAF ELQ K++DT+QK+K+ DIQ+E + K H LT TEI L TN YE VGRMFI
Sbjct: 11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI- 69
Query: 282 TPHPEVVVN-LEKKVKSYEEKIKDIESEKA 310
EV+ N L +K K +EKIK++E +K+
Sbjct: 70 LQSKEVIHNQLLEKQKIAKEKIKELEQKKS 99
>sp|Q5D016|PFD1_DANRE Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 SV=1
Length = 122
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
KAFAELQ KM+DT+QK+K+ D+Q+E + K H LT EI L +T +E GRMFI
Sbjct: 11 KAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFIL 70
Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEK 309
E+ L +K K+ ++KIK++E +K
Sbjct: 71 QSKGEISNQLLEKQKTADDKIKELEQKK 98
>sp|Q4SPU8|PFD1_TETNG Prefoldin subunit 1 OS=Tetraodon nigroviridis GN=pfdn1 PE=3 SV=1
Length = 122
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
KAF ELQ K++DT+QK ++ D+Q++ K + H +LT TE+ L T YE VGRMFI
Sbjct: 11 KAFTELQAKVIDTQQKARLADLQIDQLTKVQKHARLTQTEMASLPDNTRLYEGVGRMFIL 70
Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEK 309
E+ +L K+ +EK+K++E +K
Sbjct: 71 RSKEEINNHLTDAQKTADEKVKELEQKK 98
>sp|P59808|SASH1_MOUSE SAM and SH3 domain-containing protein 1 OS=Mus musculus GN=Sash1
PE=1 SV=1
Length = 1230
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
KEHM F+ NGYEDL++F ++EEDL+ L I +PEHRA +L AV+++ EY+S + D+ S
Sbjct: 641 KEHMPTFLFNGYEDLDTFKLLEEEDLDELNIRDPEHRAVLLTAVELLQEYDS-NSDQSGS 699
Query: 71 LDE---DDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSS 112
++ D+ SG+ R++ E S+++ + T +++S SS
Sbjct: 700 QEKLLVDNQGLSGRSPRDSGCYE-SSENLENAKTHKPSVLSTKSS 743
>sp|A0JN71|SASH3_BOVIN SAM and SH3 domain-containing protein 3 OS=Bos taurus GN=SASH3 PE=2
SV=2
Length = 380
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEE 68
+EH S +LNGY+ LE F E++E LN L I++P+HRAK+L A +++ +Y++ E+ E
Sbjct: 267 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYDTGSEEAE 324
>sp|Q8K352|SASH3_MOUSE SAM and SH3 domain-containing protein 3 OS=Mus musculus GN=Sash3
PE=2 SV=2
Length = 380
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 39/52 (75%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
+EH S +LNGY+ LE F E++E LN L I++P+HRAK+L A +++ +Y++
Sbjct: 267 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYDT 318
>sp|O75995|SASH3_HUMAN SAM and SH3 domain-containing protein 3 OS=Homo sapiens GN=SASH3
PE=1 SV=2
Length = 380
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 39/52 (75%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
+EH S +LNGY+ LE F E++E LN L I++P+HRAK+L A +++ +Y++
Sbjct: 267 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYDT 318
>sp|O94885|SASH1_HUMAN SAM and SH3 domain-containing protein 1 OS=Homo sapiens GN=SASH1
PE=1 SV=3
Length = 1247
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
KEHM F+ NGYEDL++F ++EEDL+ L I +PEHRA +L AV+++ EY+S + D+ S
Sbjct: 648 KEHMPTFLFNGYEDLDTFKLLEEEDLDELNIRDPEHRAVLLTAVELLQEYDS-NSDQSGS 706
Query: 71 LDE---DDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSS 112
++ D SG R++ E S+++ + T +++S SS
Sbjct: 707 QEKLLVDSQGLSGCSPRDSGCYE-SSENLENGKTRKASLLSAKSS 750
>sp|P57725|SAMN1_MOUSE SAM domain-containing protein SAMSN-1 OS=Mus musculus GN=Samsn1
PE=1 SV=2
Length = 372
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
+E+ S +LNGYE L+ +IKE L L I +PE RA++L+A + + + E+ E E+ S
Sbjct: 256 QEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLDEETTVEHEKES 315
Query: 71 L 71
+
Sbjct: 316 V 316
>sp|Q5TGI4|SAMD5_HUMAN Sterile alpha motif domain-containing protein 5 OS=Homo sapiens
GN=SAMD5 PE=2 SV=1
Length = 173
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
++ FV NGY+DLE +I + DL+ + +L P HR +IL AV+ + E ++
Sbjct: 17 QYAESFVDNGYDDLEVCKQIGDPDLDAIGVLAPAHRRRILEAVRRLREQDA 67
>sp|Q09YL6|SAMD5_BOVIN Sterile alpha motif domain-containing protein 5 OS=Bos taurus
GN=SAMD5 PE=4 SV=1
Length = 175
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
++ FV NGY+DLE +I + DL+ + +L P HR +IL AV+ + E ++
Sbjct: 17 QYAESFVDNGYDDLEVCKQIGDPDLDAIGVLAPAHRRRILEAVRRLREQDA 67
>sp|Q3V1H9|SAMD5_MOUSE Sterile alpha motif domain-containing protein 5 OS=Mus musculus
GN=Samd5 PE=2 SV=1
Length = 173
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
++ FV NGY+DLE +I + DL+ + +L P HR +IL AV + E ++
Sbjct: 17 QYAESFVDNGYDDLEVCKQIGDPDLDAIGVLAPAHRRRILEAVHRLREQDA 67
>sp|Q9NSI8|SAMN1_HUMAN SAM domain-containing protein SAMSN-1 OS=Homo sapiens GN=SAMSN1
PE=1 SV=1
Length = 373
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
+E+ S +LNGYE LE +IKE L L I NP+ R ++L+A +
Sbjct: 256 QEYTSTLLLNGYETLEDLKDIKESHLIELNIENPDDRRRLLSAAE 300
>sp|Q91845|EPA4A_XENLA Ephrin type-A receptor 4-A OS=Xenopus laevis GN=epha4-a PE=2 SV=1
Length = 986
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
+A+ ME K++ F GY LE+ + ++DL + I +P H+ KIL++VQ M
Sbjct: 921 QAIKMERYKDN---FTAAGYTSLEAVVHVNQDDLTRIGISSPSHQNKILSSVQGMR 973
>sp|Q54JS0|PFD1_DICDI Probable prefoldin subunit 1 OS=Dictyostelium discoideum GN=pfdn1
PE=3 SV=1
Length = 115
Score = 38.9 bits (89), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
+AF E + K+ + L I +++ + ++ +T+ E++ L T TY++VG+MF+
Sbjct: 7 QAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMFVI 66
Query: 282 TPHPEVVVNLEKKVKSYEEKIKDI 305
+P + L+++V+ EE +K +
Sbjct: 67 SPMTSLKTELKQQVQKDEEDVKGL 90
>sp|Q17827|PFD1_CAEEL Probable prefoldin subunit 1 OS=Caenorhabditis elegans GN=pfd-1
PE=2 SV=1
Length = 117
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR-----LQPTTNTYESVG 276
KAF +LQ K +T+ ++ +Q E KK ++ ++ ++E + L Y SVG
Sbjct: 8 KAFRDLQFKTNETRMRI----VQGEQNKKV-NYQKMRISESTKKNLVDLDENLKYYRSVG 62
Query: 277 RMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEK 309
RMF+ T P + E + K +EKI+ IE +K
Sbjct: 63 RMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQK 95
>sp|Q91694|EPA4B_XENLA Ephrin type-A receptor 4-B OS=Xenopus laevis GN=epha4-b PE=2 SV=1
Length = 985
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
K + F GY LE+ + ++DL + I +P H+ KIL++VQ M
Sbjct: 925 KRYKDNFTAAGYTSLEAVVHVNQDDLTRIGISSPSHQNKILSSVQGMR 972
>sp|Q61SU8|PFD1_CAEBR Probable prefoldin subunit 1 OS=Caenorhabditis briggsae GN=pfd-1
PE=3 SV=1
Length = 117
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR----LQPTTNTYESVGR 277
KAF +LQ K +T+ ++ +Q E KK H KR L Y SVGR
Sbjct: 8 KAFRDLQFKTNETRMRI----VQGEQNKKVNHQKMRISESTKRNLIGLNEDLKYYRSVGR 63
Query: 278 MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAII---LVPALKIARYLV 324
MF+ T + E + K ++KI+ I+ +K + LV A R L+
Sbjct: 64 MFLLTDKASEIARHETEAKQSKDKIEAIDKQKEYLEKGLVEAESNLRELI 113
>sp|P54764|EPHA4_HUMAN Ephrin type-A receptor 4 OS=Homo sapiens GN=EPHA4 PE=1 SV=1
Length = 986
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
+A+ M+ K++ F GY LE+ + +EDL + I H+ KIL++VQ M
Sbjct: 921 QAIKMDRYKDN---FTAAGYTTLEAVVHVNQEDLARIGITAITHQNKILSSVQAMR 973
>sp|Q2I6J1|SHP2A_DANRE Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2A OS=Danio
rerio GN=inppl1a PE=2 SV=2
Length = 1266
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 20 NGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
NG++DLE +I EEDL + +P H+ +LA+++
Sbjct: 1227 NGWDDLEFLSDITEEDLEEAGVRDPAHKKILLASLK 1262
>sp|P59672|ANS1A_MOUSE Ankyrin repeat and SAM domain-containing protein 1A OS=Mus musculus
GN=Anks1a PE=1 SV=3
Length = 1150
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 11 KEHMSVFVLNGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQVM 57
+++ S +LNG++D+ ++E+DL + I +P+HR K+L A + +
Sbjct: 727 QQYESKLLLNGFDDVRFLGSNVMEEQDLREIGISDPQHRRKLLQAARSL 775
>sp|Q6P549|SHIP2_MOUSE Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 OS=Mus
musculus GN=Inppl1 PE=1 SV=1
Length = 1257
Score = 34.7 bits (78), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQV 56
+A+ +E +E + V NG++DLE +I EEDL + +P H+ +L +Q+
Sbjct: 1205 RAIGLERYEEGL---VHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQL 1255
>sp|O15357|SHIP2_HUMAN Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 OS=Homo
sapiens GN=INPPL1 PE=1 SV=2
Length = 1258
Score = 34.7 bits (78), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQV 56
+A+ +E +E + V NG++DLE +I EEDL + +P H+ +L +Q+
Sbjct: 1206 RAIGLERYEEGL---VHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQL 1256
>sp|Q9WVR3|SHIP2_RAT Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 OS=Rattus
norvegicus GN=Inppl1 PE=1 SV=1
Length = 1257
Score = 34.3 bits (77), Expect = 1.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQV 56
+A+ +E +E + V NG++DLE +I EEDL + +P H+ +L +Q+
Sbjct: 1205 RAIGLERYEEGL---VHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQL 1255
>sp|Q61LA1|TTC21_CAEBR Tetratricopeptide repeat protein 21 homolog OS=Caenorhabditis
briggsae GN=CBG09016 PE=3 SV=1
Length = 1323
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 237 KLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296
++++ +I +E KK+K E+ +++PT +Y +G F+K PE +N
Sbjct: 704 RIRMAEIYLEE-KKDKRMFAACYRELLKVEPTPGSYSLLGDAFMKVQEPEDAINF----- 757
Query: 297 SYEEKIK 303
YE+ +K
Sbjct: 758 -YEQALK 763
>sp|Q8WXD9|CSKI1_HUMAN Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1
Length = 1431
Score = 33.5 bits (75), Expect = 2.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPD 64
++ V V NGYE+++ +I EDL + I H+ K++ AV+ + E + +
Sbjct: 557 QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAE 609
>sp|Q8VHK2|CSKI1_RAT Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1
Length = 1430
Score = 33.1 bits (74), Expect = 3.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPD 64
++ V V NGYE+++ +I EDL + I H+ K++ AV+ + E + +
Sbjct: 559 QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAE 611
>sp|Q6P9K8|CSKI1_MOUSE Caskin-1 OS=Mus musculus GN=Caskin1 PE=1 SV=2
Length = 1431
Score = 33.1 bits (74), Expect = 3.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPD 64
++ V V NGYE+++ +I EDL + I H+ K++ AV+ + E + +
Sbjct: 561 QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAE 613
>sp|O14334|PFD1_SCHPO Probable prefoldin subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC1D7.01 PE=3 SV=1
Length = 112
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 47/82 (57%)
Query: 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPH 284
+++Q K +D++Q+L+ +Q+ ++ ++L E++ + Y S+G+MF+K+
Sbjct: 6 SQIQEKAVDSQQQLRTIMVQIAAKERALKISELAKKELEDVGEDKAVYTSLGKMFMKSDL 65
Query: 285 PEVVVNLEKKVKSYEEKIKDIE 306
V +L+ ++ S E I+ ++
Sbjct: 66 ASVRTHLDAEMASLREDIEALQ 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,630,518
Number of Sequences: 539616
Number of extensions: 5219073
Number of successful extensions: 31004
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 28864
Number of HSP's gapped (non-prelim): 2091
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)