Query psy14557
Match_columns 338
No_of_seqs 177 out of 377
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 22:55:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3501|consensus 99.9 1.6E-24 3.5E-29 181.1 12.5 112 220-331 1-112 (114)
2 PRK09343 prefoldin subunit bet 99.9 5.3E-22 1.2E-26 167.9 14.7 110 217-330 6-115 (121)
3 TIGR02338 gimC_beta prefoldin, 99.9 1.4E-20 3.1E-25 155.9 14.6 108 217-328 2-109 (110)
4 COG1382 GimC Prefoldin, chaper 99.8 6.1E-19 1.3E-23 150.4 14.6 111 216-330 4-114 (119)
5 PF01920 Prefoldin_2: Prefoldi 99.8 6.7E-19 1.5E-23 140.9 10.7 105 225-329 1-105 (106)
6 cd00632 Prefoldin_beta Prefold 99.7 2.5E-16 5.4E-21 129.3 13.5 104 225-328 2-105 (105)
7 KOG4384|consensus 99.7 1.1E-17 2.3E-22 163.5 6.1 70 1-70 218-287 (361)
8 PF07647 SAM_2: SAM domain (St 99.0 1.1E-10 2.3E-15 87.0 2.8 57 2-58 10-66 (66)
9 KOG3478|consensus 99.0 2.2E-08 4.7E-13 85.4 14.0 117 219-335 2-118 (120)
10 PF00536 SAM_1: SAM domain (St 99.0 6.4E-10 1.4E-14 82.5 4.0 56 2-58 9-64 (64)
11 cd00166 SAM Sterile alpha moti 98.9 1.9E-09 4.1E-14 78.0 3.5 56 2-58 8-63 (63)
12 cd00890 Prefoldin Prefoldin is 98.8 6E-08 1.3E-12 80.2 11.8 102 226-327 3-128 (129)
13 smart00454 SAM Sterile alpha m 98.7 1.2E-08 2.5E-13 74.2 3.7 58 2-59 10-67 (68)
14 PRK03947 prefoldin subunit alp 98.6 1.3E-06 2.7E-11 74.7 13.8 109 221-329 5-137 (140)
15 TIGR00293 prefoldin, archaeal 98.0 9.7E-05 2.1E-09 61.9 11.8 100 225-324 2-124 (126)
16 cd00584 Prefoldin_alpha Prefol 97.9 0.00019 4.1E-09 60.4 12.1 102 226-327 3-128 (129)
17 KOG4098|consensus 97.9 0.0003 6.4E-09 62.0 12.4 96 227-322 20-115 (140)
18 PRK14011 prefoldin subunit alp 97.9 0.00045 9.8E-09 61.1 13.7 110 217-330 2-132 (144)
19 KOG1760|consensus 97.5 0.0017 3.6E-08 56.9 11.1 106 216-327 17-122 (131)
20 COG1730 GIM5 Predicted prefold 96.9 0.023 4.9E-07 50.7 12.7 105 223-327 7-135 (145)
21 KOG0196|consensus 96.9 0.00054 1.2E-08 74.6 2.7 58 2-59 927-984 (996)
22 PF02996 Prefoldin: Prefoldin 96.6 0.0087 1.9E-07 49.2 7.2 62 267-328 57-119 (120)
23 PRK01203 prefoldin subunit alp 96.2 0.12 2.7E-06 45.4 12.5 95 226-320 4-121 (130)
24 PRK11637 AmiB activator; Provi 95.5 0.38 8.2E-06 48.3 14.2 90 218-329 43-132 (428)
25 PRK03947 prefoldin subunit alp 95.3 0.1 2.2E-06 44.6 8.3 105 226-330 3-131 (140)
26 PRK09343 prefoldin subunit bet 95.1 0.23 5E-06 42.5 9.7 105 226-330 4-108 (121)
27 cd00632 Prefoldin_beta Prefold 95.0 0.12 2.7E-06 42.5 7.6 100 219-320 3-104 (105)
28 TIGR02338 gimC_beta prefoldin, 94.9 0.17 3.8E-06 42.1 8.3 99 231-329 5-103 (110)
29 PF09597 IGR: IGR protein moti 94.8 0.038 8.3E-07 42.3 3.8 52 2-59 2-56 (57)
30 cd00890 Prefoldin Prefoldin is 94.5 0.14 3.1E-06 42.3 6.7 97 233-329 3-123 (129)
31 KOG0507|consensus 94.3 0.0098 2.1E-07 64.6 -0.7 65 3-67 302-369 (854)
32 PF09726 Macoilin: Transmembra 94.0 0.91 2E-05 49.4 13.2 103 224-328 469-580 (697)
33 TIGR00293 prefoldin, archaeal 93.7 0.55 1.2E-05 39.4 8.8 97 232-328 2-121 (126)
34 PF01920 Prefoldin_2: Prefoldi 93.4 0.31 6.8E-06 38.9 6.6 100 219-318 2-101 (106)
35 COG1730 GIM5 Predicted prefold 93.4 0.14 3E-06 45.8 4.9 100 227-326 4-127 (145)
36 COG1579 Zn-ribbon protein, pos 92.9 3.1 6.7E-05 40.1 13.5 103 219-325 42-149 (239)
37 PRK10884 SH3 domain-containing 92.8 2.8 6.1E-05 39.2 12.9 83 217-324 88-170 (206)
38 PRK03918 chromosome segregatio 92.8 2.4 5.2E-05 45.6 14.1 97 220-319 389-485 (880)
39 PRK11637 AmiB activator; Provi 92.7 2.7 5.8E-05 42.3 13.5 44 284-327 168-211 (428)
40 cd00584 Prefoldin_alpha Prefol 92.4 0.86 1.9E-05 38.3 8.2 97 233-329 3-123 (129)
41 PHA02562 46 endonuclease subun 92.2 1.8 4E-05 44.0 11.7 36 273-310 288-323 (562)
42 PF11932 DUF3450: Protein of u 91.6 5 0.00011 37.7 13.1 100 214-328 20-119 (251)
43 TIGR02977 phageshock_pspA phag 91.0 11 0.00023 35.0 14.5 46 219-264 28-73 (219)
44 PF04012 PspA_IM30: PspA/IM30 90.9 7.7 0.00017 35.4 13.3 47 218-264 26-72 (221)
45 COG1382 GimC Prefoldin, chaper 90.4 2 4.4E-05 37.5 8.6 94 230-329 7-106 (119)
46 COG1579 Zn-ribbon protein, pos 90.2 3.9 8.4E-05 39.4 11.0 29 234-262 43-71 (239)
47 PHA02562 46 endonuclease subun 89.7 3.5 7.7E-05 42.0 11.1 45 221-265 298-342 (562)
48 PRK01156 chromosome segregatio 89.5 8.6 0.00019 42.0 14.4 100 222-325 409-508 (895)
49 KOG0996|consensus 89.5 5 0.00011 46.2 12.8 51 219-269 388-438 (1293)
50 PRK03918 chromosome segregatio 89.5 5.2 0.00011 43.1 12.7 27 218-244 203-229 (880)
51 TIGR02231 conserved hypothetic 89.0 4.9 0.00011 41.5 11.7 46 284-329 129-174 (525)
52 PF05377 FlaC_arch: Flagella a 89.0 2 4.3E-05 33.0 6.5 41 288-328 2-42 (55)
53 PF05667 DUF812: Protein of un 88.9 11 0.00024 40.6 14.4 109 220-328 326-436 (594)
54 PF08317 Spc7: Spc7 kinetochor 88.8 10 0.00022 37.2 13.1 11 194-204 99-109 (325)
55 PF04156 IncA: IncA protein; 88.8 9.3 0.0002 33.9 11.8 38 219-256 85-122 (191)
56 PRK09039 hypothetical protein; 88.4 11 0.00024 37.5 13.2 45 219-263 120-164 (343)
57 PRK10698 phage shock protein P 87.8 22 0.00048 33.4 14.2 46 219-264 28-73 (222)
58 PRK02224 chromosome segregatio 87.3 13 0.00028 40.4 14.0 15 42-56 31-45 (880)
59 COG3883 Uncharacterized protei 87.1 14 0.00031 36.2 12.7 26 287-312 149-174 (265)
60 PRK02224 chromosome segregatio 87.0 8.2 0.00018 41.9 12.3 86 232-318 415-500 (880)
61 COG1842 PspA Phage shock prote 86.4 28 0.0006 33.2 14.0 46 219-264 28-73 (225)
62 smart00502 BBC B-Box C-termina 86.3 15 0.00033 29.2 12.0 71 218-298 3-73 (127)
63 TIGR02169 SMC_prok_A chromosom 85.9 15 0.00033 40.2 13.7 7 44-50 535-541 (1164)
64 KOG0804|consensus 85.6 15 0.00032 38.8 12.6 12 76-88 133-144 (493)
65 TIGR02169 SMC_prok_A chromosom 84.9 21 0.00045 39.3 14.1 32 220-251 796-827 (1164)
66 PF12718 Tropomyosin_1: Tropom 84.8 22 0.00049 31.3 11.9 39 226-264 32-70 (143)
67 KOG4374|consensus 84.6 0.65 1.4E-05 44.1 2.3 58 2-60 155-212 (216)
68 KOG0995|consensus 83.4 9.2 0.0002 41.1 10.3 97 221-317 227-325 (581)
69 KOG0250|consensus 83.3 26 0.00057 40.3 14.2 39 110-149 554-592 (1074)
70 PRK10884 SH3 domain-containing 83.3 14 0.00029 34.7 10.3 28 218-245 96-123 (206)
71 PF08172 CASP_C: CASP C termin 82.6 16 0.00035 35.1 10.8 103 225-327 2-120 (248)
72 TIGR00606 rad50 rad50. This fa 82.3 14 0.0003 42.7 11.9 38 218-255 747-784 (1311)
73 TIGR03185 DNA_S_dndD DNA sulfu 82.0 22 0.00048 37.9 12.6 83 216-309 203-285 (650)
74 PF05529 Bap31: B-cell recepto 81.9 17 0.00037 32.7 10.2 37 285-321 153-189 (192)
75 COG3883 Uncharacterized protei 81.9 42 0.00092 33.0 13.4 34 292-325 147-180 (265)
76 PF05384 DegS: Sensor protein 80.9 44 0.00095 30.4 14.5 94 218-324 23-122 (159)
77 TIGR03007 pepcterm_ChnLen poly 80.8 37 0.00079 34.5 13.2 36 289-324 313-348 (498)
78 PF10146 zf-C4H2: Zinc finger- 80.4 22 0.00048 33.9 10.8 94 223-328 2-95 (230)
79 PF00261 Tropomyosin: Tropomyo 80.3 45 0.00097 31.2 12.7 39 286-324 176-214 (237)
80 PF07106 TBPIP: Tat binding pr 80.0 34 0.00074 30.2 11.3 57 238-307 81-137 (169)
81 PF03148 Tektin: Tektin family 79.8 34 0.00074 34.5 12.5 96 216-315 245-346 (384)
82 PF15619 Lebercilin: Ciliary p 79.6 53 0.0011 30.5 13.4 36 224-259 14-49 (194)
83 PRK04863 mukB cell division pr 78.8 39 0.00084 40.2 14.1 35 214-248 984-1018(1486)
84 KOG0250|consensus 78.6 36 0.00079 39.2 13.3 33 288-320 396-428 (1074)
85 KOG0976|consensus 78.6 26 0.00056 39.7 11.8 99 219-319 103-209 (1265)
86 KOG4286|consensus 77.1 13 0.00028 41.5 9.1 67 213-282 197-263 (966)
87 PF12718 Tropomyosin_1: Tropom 77.0 52 0.0011 29.0 12.2 33 293-325 108-140 (143)
88 PF04156 IncA: IncA protein; 76.9 53 0.0012 29.1 13.5 33 223-255 82-114 (191)
89 PRK09039 hypothetical protein; 76.6 74 0.0016 31.8 13.6 38 290-327 148-185 (343)
90 PF04949 Transcrip_act: Transc 76.3 63 0.0014 29.7 12.4 82 226-325 42-123 (159)
91 PF02403 Seryl_tRNA_N: Seryl-t 76.1 29 0.00062 28.3 9.0 33 290-329 71-103 (108)
92 KOG1170|consensus 76.1 1.8 4E-05 48.2 2.5 55 3-58 1005-1059(1099)
93 PF13514 AAA_27: AAA domain 75.8 56 0.0012 37.2 14.0 106 216-328 724-836 (1111)
94 TIGR01843 type_I_hlyD type I s 75.6 81 0.0018 30.6 13.4 27 227-253 142-168 (423)
95 PF04904 NCD1: NAB conserved r 75.6 3.6 7.8E-05 33.9 3.4 53 3-55 14-71 (82)
96 PRK04863 mukB cell division pr 75.0 47 0.001 39.6 13.4 51 282-332 438-488 (1486)
97 KOG1029|consensus 74.5 24 0.00052 39.8 10.2 35 224-258 488-522 (1118)
98 TIGR01005 eps_transp_fam exopo 74.5 40 0.00086 36.4 11.9 19 302-320 347-365 (754)
99 PRK04778 septation ring format 74.5 71 0.0015 33.8 13.6 57 269-327 375-431 (569)
100 PF07888 CALCOCO1: Calcium bin 74.1 53 0.0012 35.4 12.5 87 219-309 147-236 (546)
101 PF08317 Spc7: Spc7 kinetochor 73.3 84 0.0018 30.9 12.9 47 219-265 153-199 (325)
102 PF10473 CENP-F_leu_zip: Leuci 73.2 69 0.0015 28.6 11.4 103 222-332 3-105 (140)
103 TIGR00606 rad50 rad50. This fa 73.1 30 0.00066 40.0 11.2 106 217-327 824-929 (1311)
104 PF08657 DASH_Spc34: DASH comp 73.0 25 0.00055 34.1 9.1 83 226-313 177-259 (259)
105 KOG0804|consensus 72.9 36 0.00078 36.0 10.7 23 305-327 426-448 (493)
106 PRK11578 macrolide transporter 72.9 82 0.0018 30.8 12.8 91 215-324 92-182 (370)
107 PF10779 XhlA: Haemolysin XhlA 72.6 16 0.00035 28.4 6.4 40 287-326 7-46 (71)
108 PF09738 DUF2051: Double stran 72.2 96 0.0021 30.9 13.1 30 295-324 132-164 (302)
109 PF00261 Tropomyosin: Tropomyo 72.0 87 0.0019 29.3 13.1 44 219-262 103-146 (237)
110 TIGR00634 recN DNA repair prot 71.9 98 0.0021 32.6 13.8 51 218-268 157-207 (563)
111 COG1566 EmrA Multidrug resista 71.6 39 0.00084 34.2 10.4 78 193-278 68-145 (352)
112 PF04977 DivIC: Septum formati 71.5 15 0.00032 27.8 5.9 55 219-273 21-76 (80)
113 PF08614 ATG16: Autophagy prot 71.3 29 0.00062 31.6 8.6 44 284-327 135-178 (194)
114 smart00787 Spc7 Spc7 kinetocho 71.1 86 0.0019 31.2 12.5 31 291-321 230-260 (312)
115 PF06008 Laminin_I: Laminin Do 71.0 91 0.002 29.4 12.2 50 214-265 119-168 (264)
116 PF09726 Macoilin: Transmembra 70.8 1E+02 0.0022 34.0 14.0 31 298-328 543-573 (697)
117 PF01486 K-box: K-box region; 70.5 27 0.00058 28.5 7.5 75 234-322 17-97 (100)
118 PLN02678 seryl-tRNA synthetase 70.3 39 0.00084 35.3 10.3 35 290-331 75-109 (448)
119 PRK05431 seryl-tRNA synthetase 70.2 48 0.001 34.0 10.8 30 301-330 74-103 (425)
120 PRK11519 tyrosine kinase; Prov 69.8 1.2E+02 0.0025 33.1 14.2 28 234-261 265-292 (719)
121 COG4942 Membrane-bound metallo 69.5 1.2E+02 0.0027 31.7 13.6 36 222-257 38-73 (420)
122 TIGR02231 conserved hypothetic 69.1 56 0.0012 33.9 11.2 32 289-320 141-172 (525)
123 PF03961 DUF342: Protein of un 68.4 41 0.00088 34.3 9.9 30 215-244 326-356 (451)
124 COG4942 Membrane-bound metallo 67.8 1.2E+02 0.0025 31.9 13.0 69 219-309 42-110 (420)
125 smart00787 Spc7 Spc7 kinetocho 67.7 1.2E+02 0.0026 30.1 12.8 95 219-324 148-242 (312)
126 PF03148 Tektin: Tektin family 67.2 1.4E+02 0.003 30.2 13.2 101 218-318 254-363 (384)
127 KOG2273|consensus 67.1 66 0.0014 33.1 11.2 96 221-329 273-371 (503)
128 PF02050 FliJ: Flagellar FliJ 67.0 59 0.0013 25.4 11.2 41 284-324 50-90 (123)
129 TIGR00414 serS seryl-tRNA synt 67.0 61 0.0013 33.2 10.8 30 289-318 72-101 (418)
130 PF12128 DUF3584: Protein of u 66.8 53 0.0012 37.9 11.4 33 216-248 601-633 (1201)
131 PF06810 Phage_GP20: Phage min 66.8 96 0.0021 27.8 11.1 47 218-264 2-48 (155)
132 PF05278 PEARLI-4: Arabidopsis 66.6 69 0.0015 31.7 10.6 42 285-326 220-261 (269)
133 PF05565 Sipho_Gp157: Siphovir 66.5 22 0.00048 31.7 6.8 46 285-330 46-91 (162)
134 PF15397 DUF4618: Domain of un 66.4 84 0.0018 30.8 11.1 105 221-331 5-112 (258)
135 PF04912 Dynamitin: Dynamitin 65.8 36 0.00078 34.1 8.8 47 219-265 319-365 (388)
136 TIGR01954 nusA_Cterm_rpt trans 65.8 9.3 0.0002 26.7 3.4 43 13-55 5-47 (50)
137 PRK04778 septation ring format 65.7 1.3E+02 0.0029 31.8 13.3 36 288-323 378-413 (569)
138 PF07851 TMPIT: TMPIT-like pro 65.7 74 0.0016 32.2 10.9 50 218-267 7-60 (330)
139 TIGR03185 DNA_S_dndD DNA sulfu 65.6 1.2E+02 0.0026 32.5 13.1 12 45-56 39-50 (650)
140 PRK14011 prefoldin subunit alp 65.5 37 0.0008 30.3 7.9 94 234-327 8-122 (144)
141 KOG1899|consensus 65.2 71 0.0015 35.4 11.2 113 214-329 103-217 (861)
142 PF07888 CALCOCO1: Calcium bin 65.2 1.2E+02 0.0025 32.9 12.7 26 219-244 168-193 (546)
143 KOG0933|consensus 64.8 82 0.0018 36.6 11.9 113 219-331 681-804 (1174)
144 KOG3678|consensus 64.7 5.5 0.00012 42.7 2.9 51 10-60 551-601 (832)
145 TIGR01005 eps_transp_fam exopo 64.6 92 0.002 33.6 12.1 33 220-252 293-332 (754)
146 PF04111 APG6: Autophagy prote 64.1 18 0.00039 35.7 6.2 40 287-326 51-90 (314)
147 PF11932 DUF3450: Protein of u 63.4 53 0.0011 30.9 9.0 63 228-295 69-133 (251)
148 PF15294 Leu_zip: Leucine zipp 63.1 1.7E+02 0.0036 29.2 13.9 52 215-266 125-176 (278)
149 PF06005 DUF904: Protein of un 62.9 77 0.0017 25.3 11.3 29 223-251 5-33 (72)
150 PRK05771 V-type ATP synthase s 62.8 65 0.0014 34.4 10.5 44 283-326 83-126 (646)
151 PF13514 AAA_27: AAA domain 62.8 91 0.002 35.6 12.1 30 287-316 243-272 (1111)
152 PF08286 Spc24: Spc24 subunit 62.8 2.1 4.6E-05 36.2 -0.4 59 219-282 10-76 (118)
153 PF00769 ERM: Ezrin/radixin/mo 62.5 1.5E+02 0.0032 28.4 12.5 47 219-265 9-55 (246)
154 PF13851 GAS: Growth-arrest sp 62.2 1.3E+02 0.0029 27.8 13.0 108 219-329 59-172 (201)
155 TIGR03017 EpsF chain length de 62.1 1.7E+02 0.0038 29.1 13.8 28 247-274 258-286 (444)
156 PF08946 Osmo_CC: Osmosensory 61.7 16 0.00036 27.2 4.1 28 288-315 14-41 (46)
157 KOG0161|consensus 61.4 1.1E+02 0.0025 37.6 13.0 99 225-325 904-1003(1930)
158 KOG0971|consensus 61.4 1.2E+02 0.0025 35.2 12.2 100 216-323 225-348 (1243)
159 COG1196 Smc Chromosome segrega 61.2 1.2E+02 0.0027 34.8 12.9 19 285-303 375-393 (1163)
160 PF15456 Uds1: Up-regulated Du 61.1 1.1E+02 0.0025 26.6 13.1 88 218-324 25-112 (124)
161 PLN02939 transferase, transfer 60.6 42 0.00091 38.4 8.9 48 277-325 235-282 (977)
162 KOG4403|consensus 60.3 91 0.002 33.2 10.6 94 222-325 259-372 (575)
163 PF10186 Atg14: UV radiation r 60.3 1.4E+02 0.003 27.7 11.1 19 224-242 22-40 (302)
164 PRK10929 putative mechanosensi 60.1 1.2E+02 0.0027 35.3 12.6 108 216-324 103-225 (1109)
165 KOG0018|consensus 59.8 95 0.0021 36.1 11.4 108 219-326 314-442 (1141)
166 KOG0996|consensus 59.6 1.3E+02 0.0029 35.4 12.6 40 218-257 781-820 (1293)
167 PF03962 Mnd1: Mnd1 family; I 59.6 83 0.0018 29.0 9.3 30 226-255 66-95 (188)
168 PF14257 DUF4349: Domain of un 59.5 41 0.00088 31.6 7.5 30 288-317 164-193 (262)
169 KOG3478|consensus 59.1 1.3E+02 0.0028 26.6 10.0 97 227-325 3-101 (120)
170 PF00170 bZIP_1: bZIP transcri 58.5 51 0.0011 24.7 6.5 39 284-322 24-62 (64)
171 PRK09841 cryptic autophosphory 58.4 2.3E+02 0.005 30.9 13.9 36 227-262 258-293 (726)
172 PF10828 DUF2570: Protein of u 58.0 64 0.0014 27.0 7.7 42 294-336 54-95 (110)
173 PF00038 Filament: Intermediat 57.9 1.7E+02 0.0038 27.7 13.3 19 215-233 162-180 (312)
174 TIGR01730 RND_mfp RND family e 57.8 63 0.0014 30.0 8.4 28 216-243 58-85 (322)
175 PF15369 KIAA1328: Uncharacter 57.7 52 0.0011 33.4 8.1 59 251-324 6-64 (328)
176 PRK10361 DNA recombination pro 57.6 2.6E+02 0.0057 29.7 13.6 40 284-323 83-122 (475)
177 KOG1916|consensus 57.4 1.1E+02 0.0024 35.4 11.3 88 229-319 946-1034(1283)
178 KOG0977|consensus 57.2 1.5E+02 0.0033 32.1 11.9 96 219-322 96-191 (546)
179 PRK01156 chromosome segregatio 57.0 2.4E+02 0.0052 31.1 13.8 20 37-56 26-45 (895)
180 PF10359 Fmp27_WPPW: RNA pol I 57.0 43 0.00094 34.7 7.8 40 289-328 196-235 (475)
181 PLN02678 seryl-tRNA synthetase 57.0 1.4E+02 0.003 31.3 11.4 25 288-312 80-104 (448)
182 PF15070 GOLGA2L5: Putative go 56.8 1.7E+02 0.0037 31.9 12.4 44 219-262 19-62 (617)
183 PRK11281 hypothetical protein; 56.8 1.2E+02 0.0026 35.3 11.9 36 215-250 121-156 (1113)
184 PF02994 Transposase_22: L1 tr 56.3 39 0.00085 34.1 7.2 41 286-326 144-184 (370)
185 TIGR01843 type_I_hlyD type I s 56.2 2E+02 0.0043 27.9 14.6 38 220-257 142-179 (423)
186 PF05816 TelA: Toxic anion res 56.1 1.2E+02 0.0027 29.9 10.5 108 220-327 82-196 (333)
187 PF04912 Dynamitin: Dynamitin 55.9 2.2E+02 0.0048 28.6 12.4 108 217-324 241-360 (388)
188 COG4372 Uncharacterized protei 55.9 2.8E+02 0.006 29.4 13.1 41 224-264 139-179 (499)
189 PF12128 DUF3584: Protein of u 55.6 1.6E+02 0.0034 34.2 12.5 27 226-252 604-630 (1201)
190 KOG0161|consensus 55.1 1.5E+02 0.0032 36.7 12.5 99 222-328 1442-1540(1930)
191 TIGR02894 DNA_bind_RsfA transc 54.7 1.1E+02 0.0023 28.3 9.0 37 291-327 109-145 (161)
192 PF05700 BCAS2: Breast carcino 54.6 74 0.0016 29.7 8.3 53 225-279 139-192 (221)
193 PF11802 CENP-K: Centromere-as 54.5 99 0.0022 30.6 9.3 92 219-312 27-126 (268)
194 PF04977 DivIC: Septum formati 54.3 63 0.0014 24.3 6.5 42 289-330 20-64 (80)
195 PF04102 SlyX: SlyX; InterPro 53.2 80 0.0017 24.5 7.0 43 287-329 5-47 (69)
196 PF12761 End3: Actin cytoskele 53.1 2.1E+02 0.0045 27.2 11.2 87 145-240 18-121 (195)
197 PF06005 DUF904: Protein of un 53.1 53 0.0011 26.2 6.0 30 300-329 39-68 (72)
198 COG5185 HEC1 Protein involved 53.1 1.7E+02 0.0036 31.7 11.2 84 235-318 270-362 (622)
199 COG3074 Uncharacterized protei 53.0 58 0.0013 26.6 6.2 44 288-331 27-77 (79)
200 PF04375 HemX: HemX; InterPro 52.9 1.9E+02 0.0041 29.1 11.3 16 234-249 58-73 (372)
201 COG1196 Smc Chromosome segrega 52.9 1.7E+02 0.0036 33.8 12.2 7 120-126 607-613 (1163)
202 PRK10803 tol-pal system protei 52.8 42 0.00092 32.2 6.5 39 223-261 55-93 (263)
203 PHA02047 phage lambda Rz1-like 52.7 83 0.0018 27.0 7.4 50 285-334 33-82 (101)
204 PF14193 DUF4315: Domain of un 52.7 72 0.0016 26.2 6.9 43 289-331 4-47 (83)
205 PF13758 Prefoldin_3: Prefoldi 52.7 82 0.0018 26.9 7.4 67 242-316 32-98 (99)
206 TIGR01730 RND_mfp RND family e 52.4 1.2E+02 0.0026 28.1 9.3 30 226-255 61-90 (322)
207 KOG4643|consensus 52.3 1.4E+02 0.0029 34.9 11.0 46 220-265 182-227 (1195)
208 KOG4360|consensus 51.6 3.1E+02 0.0068 29.9 13.0 105 218-327 193-302 (596)
209 KOG0239|consensus 51.5 2.2E+02 0.0047 31.5 12.3 103 223-330 176-278 (670)
210 PF13166 AAA_13: AAA domain 51.3 2.7E+02 0.0058 29.6 12.7 41 290-330 428-471 (712)
211 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.1 1.6E+02 0.0034 25.3 12.0 74 247-328 46-119 (132)
212 TIGR02680 conserved hypothetic 51.1 3.8E+02 0.0083 31.7 14.8 97 220-329 740-836 (1353)
213 PF03961 DUF342: Protein of un 50.8 1.3E+02 0.0029 30.7 10.1 36 284-319 373-408 (451)
214 PLN02320 seryl-tRNA synthetase 50.8 1.6E+02 0.0034 31.5 10.8 30 301-330 138-167 (502)
215 TIGR01010 BexC_CtrB_KpsE polys 50.8 2.5E+02 0.0055 27.5 14.4 29 245-273 216-245 (362)
216 KOG0709|consensus 50.7 2.9E+02 0.0063 29.5 12.5 47 283-329 269-315 (472)
217 PF05667 DUF812: Protein of un 50.6 1.9E+02 0.0041 31.4 11.5 46 218-263 331-376 (594)
218 KOG2189|consensus 50.2 66 0.0014 36.2 8.1 41 282-322 88-128 (829)
219 PF06160 EzrA: Septation ring 50.0 2E+02 0.0043 30.6 11.4 62 266-329 368-429 (560)
220 KOG1003|consensus 49.7 1.5E+02 0.0032 28.4 9.3 92 229-323 81-181 (205)
221 smart00338 BRLZ basic region l 49.7 61 0.0013 24.3 5.7 38 285-322 25-62 (65)
222 PF14282 FlxA: FlxA-like prote 49.7 76 0.0016 26.6 6.8 44 284-327 17-71 (106)
223 PF05529 Bap31: B-cell recepto 49.3 1.1E+02 0.0023 27.6 8.2 34 283-316 158-191 (192)
224 PF02388 FemAB: FemAB family; 49.2 59 0.0013 32.9 7.2 50 278-327 234-293 (406)
225 TIGR03319 YmdA_YtgF conserved 49.2 3.5E+02 0.0076 28.7 13.5 18 298-315 99-116 (514)
226 PF14193 DUF4315: Domain of un 49.1 49 0.0011 27.2 5.4 32 294-325 2-33 (83)
227 PF10779 XhlA: Haemolysin XhlA 49.1 60 0.0013 25.2 5.7 40 289-328 16-55 (71)
228 PF12329 TMF_DNA_bd: TATA elem 48.9 71 0.0015 25.3 6.2 40 285-324 32-71 (74)
229 PF04111 APG6: Autophagy prote 48.8 2.8E+02 0.0061 27.4 13.5 48 218-265 46-93 (314)
230 KOG0980|consensus 48.7 2.5E+02 0.0054 32.4 12.2 44 284-327 492-535 (980)
231 PF11471 Sugarporin_N: Maltopo 47.7 40 0.00087 26.0 4.5 29 297-325 29-57 (60)
232 PF11083 Streptin-Immun: Lanti 47.5 1.5E+02 0.0033 25.4 8.2 67 258-329 21-88 (99)
233 PF10168 Nup88: Nuclear pore c 47.5 4.4E+02 0.0095 29.3 13.9 6 132-137 457-462 (717)
234 PRK00888 ftsB cell division pr 47.3 71 0.0015 26.9 6.3 57 219-275 31-88 (105)
235 PRK14127 cell division protein 47.2 50 0.0011 28.4 5.4 56 271-326 15-70 (109)
236 KOG2483|consensus 47.1 85 0.0018 30.3 7.5 68 251-321 73-140 (232)
237 KOG1937|consensus 46.9 2.8E+02 0.006 29.8 11.6 25 219-243 297-321 (521)
238 PF14662 CCDC155: Coiled-coil 46.7 2.6E+02 0.0057 26.5 13.1 40 241-280 48-87 (193)
239 PF14073 Cep57_CLD: Centrosome 46.5 1.9E+02 0.0042 27.0 9.5 86 239-327 7-98 (178)
240 PF13118 DUF3972: Protein of u 46.3 63 0.0014 28.7 6.0 52 274-325 59-110 (126)
241 PF00435 Spectrin: Spectrin re 46.1 1.2E+02 0.0027 22.5 9.6 19 289-307 76-94 (105)
242 TIGR02680 conserved hypothetic 46.0 4E+02 0.0087 31.6 14.0 18 43-60 33-51 (1353)
243 PF10018 Med4: Vitamin-D-recep 45.9 83 0.0018 28.6 7.0 49 217-266 11-63 (188)
244 PRK14629 hypothetical protein; 45.8 30 0.00066 29.2 3.9 27 214-240 2-28 (99)
245 PRK11281 hypothetical protein; 45.7 2.7E+02 0.0059 32.6 12.4 34 231-264 75-108 (1113)
246 PRK00736 hypothetical protein; 45.6 1.3E+02 0.0029 23.4 7.2 42 286-327 5-46 (68)
247 PRK01203 prefoldin subunit alp 45.6 2.2E+02 0.0048 25.3 9.6 93 232-327 3-121 (130)
248 PF06120 Phage_HK97_TLTM: Tail 45.2 3.3E+02 0.0072 27.3 13.4 40 217-256 69-108 (301)
249 PF05565 Sipho_Gp157: Siphovir 45.1 1.9E+02 0.004 25.9 9.0 50 273-322 41-90 (162)
250 PF13851 GAS: Growth-arrest sp 45.0 2.6E+02 0.0056 26.0 13.9 102 219-323 31-137 (201)
251 PF05384 DegS: Sensor protein 44.8 2.5E+02 0.0053 25.6 10.3 57 209-265 68-127 (159)
252 COG5214 POL12 DNA polymerase a 44.7 13 0.00027 39.3 1.7 37 126-163 251-290 (581)
253 COG4372 Uncharacterized protei 44.6 2.7E+02 0.0059 29.5 11.1 40 293-332 252-291 (499)
254 KOG1029|consensus 44.4 3E+02 0.0065 31.7 11.9 16 222-237 451-466 (1118)
255 PF05791 Bacillus_HBL: Bacillu 44.2 1.9E+02 0.0042 26.2 9.1 8 318-325 167-174 (184)
256 PRK04325 hypothetical protein; 44.2 1.2E+02 0.0025 24.2 6.7 39 288-326 11-49 (74)
257 PF10481 CENP-F_N: Cenp-F N-te 44.0 3.6E+02 0.0077 27.3 12.2 55 221-275 17-76 (307)
258 PF08614 ATG16: Autophagy prot 44.0 2.5E+02 0.0054 25.5 11.6 46 280-325 138-183 (194)
259 KOG2577|consensus 43.9 62 0.0013 33.1 6.4 102 220-329 69-180 (354)
260 PF09403 FadA: Adhesion protei 43.6 2.3E+02 0.005 24.9 9.9 23 284-306 91-113 (126)
261 KOG0980|consensus 43.5 3.1E+02 0.0068 31.6 12.0 15 45-59 223-237 (980)
262 KOG2180|consensus 43.5 2.1E+02 0.0046 32.2 10.6 81 219-299 76-163 (793)
263 PRK00409 recombination and DNA 43.4 4.8E+02 0.01 29.2 13.5 49 217-265 501-549 (782)
264 PRK04406 hypothetical protein; 43.3 1.1E+02 0.0025 24.4 6.6 39 288-326 13-51 (75)
265 PF12732 YtxH: YtxH-like prote 43.2 1.5E+02 0.0033 22.8 7.3 54 274-327 14-68 (74)
266 PRK06975 bifunctional uroporph 43.2 2.4E+02 0.0051 30.7 11.0 33 287-319 379-411 (656)
267 PF04899 MbeD_MobD: MbeD/MobD 43.1 1.3E+02 0.0029 24.0 6.9 44 219-262 25-68 (70)
268 TIGR02209 ftsL_broad cell divi 43.1 1.2E+02 0.0026 23.5 6.6 48 219-266 28-75 (85)
269 PF02996 Prefoldin: Prefoldin 42.9 97 0.0021 25.3 6.4 58 199-262 60-117 (120)
270 PF15254 CCDC14: Coiled-coil d 42.6 1.4E+02 0.003 33.9 9.1 55 212-266 350-417 (861)
271 TIGR03752 conj_TIGR03752 integ 42.6 4.5E+02 0.0099 28.1 13.0 86 217-327 58-143 (472)
272 KOG4673|consensus 42.5 3.3E+02 0.0072 30.9 11.8 89 234-327 351-443 (961)
273 PRK00295 hypothetical protein; 42.4 1.5E+02 0.0033 23.1 7.1 40 287-326 6-45 (68)
274 TIGR03017 EpsF chain length de 42.4 3.6E+02 0.0078 26.9 12.5 35 219-253 258-299 (444)
275 PF09738 DUF2051: Double stran 42.4 2.1E+02 0.0045 28.6 9.6 32 295-326 214-245 (302)
276 PLN02320 seryl-tRNA synthetase 42.2 1.6E+02 0.0034 31.5 9.2 36 288-323 132-167 (502)
277 PF05701 WEMBL: Weak chloropla 42.1 3.7E+02 0.0081 28.4 12.0 98 230-328 219-330 (522)
278 KOG0964|consensus 42.0 4.5E+02 0.0098 30.9 13.0 42 219-260 675-716 (1200)
279 PF14992 TMCO5: TMCO5 family 41.8 1.7E+02 0.0036 29.2 8.8 87 220-325 9-95 (280)
280 PF12325 TMF_TATA_bd: TATA ele 41.5 2.4E+02 0.0052 24.5 12.7 45 218-262 19-63 (120)
281 PF04012 PspA_IM30: PspA/IM30 41.5 2.8E+02 0.006 25.3 13.5 90 226-318 27-116 (221)
282 PRK04406 hypothetical protein; 41.5 1.4E+02 0.0031 23.8 6.9 37 290-326 8-44 (75)
283 PF14282 FlxA: FlxA-like prote 41.2 84 0.0018 26.3 5.8 19 238-256 53-71 (106)
284 PF04100 Vps53_N: Vps53-like, 41.1 3.3E+02 0.0071 27.7 11.0 99 219-317 68-174 (383)
285 PF13543 KSR1-SAM: SAM like do 41.1 22 0.00049 31.4 2.5 56 2-58 70-129 (129)
286 KOG0995|consensus 41.1 2.8E+02 0.006 30.4 10.8 79 246-324 381-463 (581)
287 PRK02793 phi X174 lysis protei 40.9 1.4E+02 0.0031 23.5 6.7 40 287-326 9-48 (72)
288 KOG0971|consensus 40.9 2.5E+02 0.0054 32.7 10.8 74 232-310 406-479 (1243)
289 PRK05771 V-type ATP synthase s 40.8 90 0.002 33.4 7.3 39 282-320 89-127 (646)
290 PF10234 Cluap1: Clusterin-ass 40.4 3.8E+02 0.0081 26.5 13.6 90 219-323 166-262 (267)
291 COG4985 ABC-type phosphate tra 40.2 3.9E+02 0.0084 26.6 11.0 67 192-258 132-208 (289)
292 PF11414 Suppressor_APC: Adeno 40.2 66 0.0014 26.4 4.9 41 286-326 7-47 (84)
293 PRK13729 conjugal transfer pil 40.1 62 0.0013 34.3 5.9 55 275-329 58-119 (475)
294 PRK10929 putative mechanosensi 40.1 3.7E+02 0.0081 31.6 12.3 34 286-319 265-298 (1109)
295 PF11819 DUF3338: Domain of un 39.9 2.8E+02 0.0061 25.0 10.0 66 216-287 26-100 (138)
296 KOG4374|consensus 39.9 14 0.0003 35.3 1.1 61 6-67 126-186 (216)
297 PF02403 Seryl_tRNA_N: Seryl-t 39.8 2E+02 0.0044 23.3 8.3 25 288-312 76-100 (108)
298 PF06637 PV-1: PV-1 protein (P 39.7 4.5E+02 0.0097 27.8 11.6 94 220-327 283-376 (442)
299 COG2433 Uncharacterized conser 39.7 4.2E+02 0.009 29.4 11.9 17 39-55 151-167 (652)
300 COG5293 Predicted ATPase [Gene 39.6 2.8E+02 0.0061 30.0 10.4 57 230-287 256-325 (591)
301 PF14389 Lzipper-MIP1: Leucine 39.5 2.1E+02 0.0046 23.3 8.9 37 282-318 50-86 (88)
302 KOG2129|consensus 39.4 4.8E+02 0.01 28.0 11.9 50 279-328 257-306 (552)
303 PF13815 Dzip-like_N: Iguana/D 39.1 62 0.0013 27.4 4.8 37 290-326 77-113 (118)
304 PHA01750 hypothetical protein 39.0 1.2E+02 0.0026 24.6 6.0 40 284-323 33-72 (75)
305 PF10168 Nup88: Nuclear pore c 39.0 2.9E+02 0.0063 30.7 10.9 12 122-133 425-436 (717)
306 cd01109 HTH_YyaN Helix-Turn-He 38.7 37 0.00079 28.0 3.3 33 284-316 77-109 (113)
307 PRK02119 hypothetical protein; 38.7 1.6E+02 0.0035 23.4 6.7 39 288-326 11-49 (73)
308 PRK15422 septal ring assembly 38.5 1.5E+02 0.0032 24.6 6.6 42 289-330 28-76 (79)
309 PRK12705 hypothetical protein; 38.4 5.3E+02 0.011 27.7 12.8 31 294-324 103-133 (508)
310 PF12777 MT: Microtubule-bindi 38.0 1.3E+02 0.0027 29.8 7.4 41 289-329 273-313 (344)
311 KOG1924|consensus 37.9 2E+02 0.0042 33.1 9.3 78 213-290 892-977 (1102)
312 PF00170 bZIP_1: bZIP transcri 37.8 1.3E+02 0.0027 22.6 5.8 40 289-328 22-61 (64)
313 PF09766 FimP: Fms-interacting 37.8 4.4E+02 0.0095 26.5 12.5 38 219-256 16-53 (355)
314 PF14520 HHH_5: Helix-hairpin- 37.6 41 0.00088 24.8 3.1 44 12-55 16-59 (60)
315 KOG3215|consensus 37.6 3.9E+02 0.0085 25.9 12.0 93 222-320 96-191 (222)
316 PF08537 NBP1: Fungal Nap bind 37.6 3.8E+02 0.0082 27.4 10.6 85 237-322 127-211 (323)
317 KOG0946|consensus 37.6 4.5E+02 0.0097 30.3 12.0 19 309-327 808-826 (970)
318 KOG0994|consensus 37.3 1.7E+02 0.0036 35.0 8.9 6 30-35 1292-1297(1758)
319 cd01107 HTH_BmrR Helix-Turn-He 37.3 81 0.0017 26.0 5.1 53 252-317 54-106 (108)
320 TIGR02894 DNA_bind_RsfA transc 37.0 1.2E+02 0.0026 27.9 6.5 34 288-321 113-146 (161)
321 PRK10361 DNA recombination pro 36.9 3.6E+02 0.0077 28.8 10.8 42 269-310 120-164 (475)
322 cd07682 F-BAR_srGAP2 The F-BAR 36.8 2.8E+02 0.0061 27.5 9.3 41 218-262 126-166 (263)
323 KOG0243|consensus 36.7 4.1E+02 0.0089 31.1 11.8 13 185-197 358-370 (1041)
324 PF15619 Lebercilin: Ciliary p 36.6 3.5E+02 0.0077 25.1 13.0 35 219-253 58-92 (194)
325 PF11068 YlqD: YlqD protein; 36.6 2.4E+02 0.0052 24.9 8.2 45 212-265 9-53 (131)
326 PF14362 DUF4407: Domain of un 36.5 3.9E+02 0.0085 25.6 12.8 25 237-261 136-160 (301)
327 PF05622 HOOK: HOOK protein; 36.3 12 0.00026 40.5 0.0 55 219-273 243-297 (713)
328 PF15188 CCDC-167: Coiled-coil 36.3 95 0.0021 25.8 5.2 31 230-260 6-36 (85)
329 PF07106 TBPIP: Tat binding pr 36.3 82 0.0018 27.8 5.3 67 251-319 31-105 (169)
330 KOG0199|consensus 36.1 32 0.00069 38.8 3.1 56 3-59 14-70 (1039)
331 COG2433 Uncharacterized conser 36.1 4.8E+02 0.01 29.0 11.7 29 298-326 479-507 (652)
332 PF09278 MerR-DNA-bind: MerR, 36.1 76 0.0016 23.2 4.3 55 251-313 9-63 (65)
333 PF11853 DUF3373: Protein of u 36.0 31 0.00068 36.6 3.0 28 294-321 32-59 (489)
334 PF10186 Atg14: UV radiation r 35.6 3.6E+02 0.0078 24.9 13.4 7 312-318 138-144 (302)
335 PRK10920 putative uroporphyrin 35.4 4.8E+02 0.01 27.0 11.2 37 291-327 90-126 (390)
336 PF05911 DUF869: Plant protein 35.3 5.6E+02 0.012 29.0 12.4 46 219-264 593-638 (769)
337 PF13815 Dzip-like_N: Iguana/D 35.2 1.7E+02 0.0038 24.6 6.9 42 283-324 77-118 (118)
338 PF09403 FadA: Adhesion protei 35.2 3.1E+02 0.0068 24.1 10.5 24 283-306 97-120 (126)
339 KOG1937|consensus 35.1 6.1E+02 0.013 27.4 12.4 23 225-247 296-318 (521)
340 PRK04325 hypothetical protein; 34.9 1.7E+02 0.0038 23.2 6.4 37 290-326 20-56 (74)
341 PF09304 Cortex-I_coil: Cortex 34.9 1.7E+02 0.0038 25.3 6.8 19 244-262 17-35 (107)
342 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.7 2.9E+02 0.0064 23.6 11.9 37 285-321 83-119 (132)
343 PRK02119 hypothetical protein; 34.6 2E+02 0.0042 22.9 6.6 29 292-320 8-36 (73)
344 cd07683 F-BAR_srGAP1 The F-BAR 34.5 3.5E+02 0.0075 26.7 9.6 40 218-261 127-166 (253)
345 PRK00106 hypothetical protein; 34.4 6.2E+02 0.014 27.3 13.9 24 291-314 120-143 (535)
346 PHA02414 hypothetical protein 34.3 1.7E+02 0.0038 25.3 6.6 77 236-330 4-80 (111)
347 smart00338 BRLZ basic region l 34.3 1.6E+02 0.0034 22.1 5.8 36 292-327 25-60 (65)
348 PF00038 Filament: Intermediat 34.2 4.2E+02 0.009 25.2 13.9 32 223-254 55-86 (312)
349 cd04769 HTH_MerR2 Helix-Turn-H 34.2 94 0.002 25.8 5.1 39 283-321 76-114 (116)
350 KOG3501|consensus 33.9 3.3E+02 0.0071 23.9 10.6 105 219-323 7-111 (114)
351 COG1729 Uncharacterized protei 33.9 93 0.002 30.5 5.7 48 278-326 48-95 (262)
352 PF05164 ZapA: Cell division p 33.9 38 0.00083 26.2 2.5 38 201-238 4-41 (89)
353 PTZ00464 SNF-7-like protein; P 33.5 4.2E+02 0.0091 25.0 10.2 62 262-323 104-173 (211)
354 PRK05431 seryl-tRNA synthetase 33.2 1.9E+02 0.004 29.8 8.0 35 289-323 69-103 (425)
355 PTZ00446 vacuolar sorting prot 33.2 2.6E+02 0.0055 26.3 8.2 92 227-322 79-176 (191)
356 TIGR03545 conserved hypothetic 33.1 2.5E+02 0.0054 30.3 9.1 42 222-264 164-205 (555)
357 PRK00409 recombination and DNA 33.0 4.3E+02 0.0094 29.5 11.2 49 216-264 514-562 (782)
358 PF14235 DUF4337: Domain of un 32.9 3.7E+02 0.008 24.2 9.2 41 288-328 68-108 (157)
359 cd07623 BAR_SNX1_2 The Bin/Amp 32.9 4.1E+02 0.0088 24.7 14.3 49 219-267 16-64 (224)
360 PF02994 Transposase_22: L1 tr 32.8 84 0.0018 31.7 5.4 39 289-327 140-178 (370)
361 PRK06975 bifunctional uroporph 32.7 2.3E+02 0.0049 30.9 8.8 43 288-330 373-415 (656)
362 PF07058 Myosin_HC-like: Myosi 32.6 3.7E+02 0.008 27.6 9.6 90 231-325 61-161 (351)
363 KOG0999|consensus 32.6 6.3E+02 0.014 28.1 11.8 88 219-306 595-710 (772)
364 KOG0963|consensus 32.4 4.6E+02 0.0099 29.1 10.9 46 279-324 285-341 (629)
365 PF03915 AIP3: Actin interacti 32.3 1.7E+02 0.0036 30.7 7.4 87 231-317 287-386 (424)
366 KOG0240|consensus 32.2 7.3E+02 0.016 27.4 13.2 124 185-315 297-436 (607)
367 TIGR00634 recN DNA repair prot 32.2 4.7E+02 0.01 27.6 10.9 26 300-325 346-371 (563)
368 PRK00888 ftsB cell division pr 32.1 1.4E+02 0.0031 25.0 5.8 42 288-329 29-73 (105)
369 PF10458 Val_tRNA-synt_C: Valy 32.0 1E+02 0.0022 23.6 4.5 26 284-309 2-27 (66)
370 PRK13729 conjugal transfer pil 31.9 1.4E+02 0.0031 31.8 6.9 22 221-242 68-89 (475)
371 PF15458 NTR2: Nineteen comple 31.8 1.6E+02 0.0034 28.4 6.7 47 218-264 204-250 (254)
372 cd04786 HTH_MerR-like_sg7 Heli 31.8 1.4E+02 0.003 25.8 5.9 61 252-321 53-113 (131)
373 PF12329 TMF_DNA_bd: TATA elem 31.7 2E+02 0.0044 22.7 6.3 20 282-301 8-27 (74)
374 PF10211 Ax_dynein_light: Axon 31.7 2E+02 0.0042 26.5 7.1 24 124-153 4-27 (189)
375 PF05659 RPW8: Arabidopsis bro 31.6 3.7E+02 0.0081 23.9 12.0 99 219-328 10-115 (147)
376 COG4913 Uncharacterized protei 31.6 6.5E+02 0.014 29.0 12.0 60 210-269 662-745 (1104)
377 cd01106 HTH_TipAL-Mta Helix-Tu 31.4 1.3E+02 0.0028 24.4 5.3 31 285-315 72-102 (103)
378 PF07195 FliD_C: Flagellar hoo 31.0 1.1E+02 0.0023 28.6 5.4 28 296-323 196-223 (239)
379 PRK11556 multidrug efflux syst 30.7 2.5E+02 0.0054 28.4 8.3 25 215-239 118-142 (415)
380 smart00435 TOPEUc DNA Topoisom 30.6 3.7E+02 0.0081 28.0 9.5 16 47-62 112-127 (391)
381 PF03904 DUF334: Domain of unk 30.5 4.8E+02 0.01 25.5 9.7 36 226-261 47-82 (230)
382 COG3096 MukB Uncharacterized p 30.3 8.7E+02 0.019 28.3 12.7 105 216-323 985-1110(1480)
383 PF09340 NuA4: Histone acetylt 30.3 1E+02 0.0023 24.8 4.5 32 221-252 1-32 (80)
384 KOG0992|consensus 30.3 4.7E+02 0.01 28.6 10.4 47 288-334 476-522 (613)
385 PF13870 DUF4201: Domain of un 30.3 3.9E+02 0.0085 23.7 11.4 33 283-315 139-174 (177)
386 PF13864 Enkurin: Calmodulin-b 30.3 2.3E+02 0.005 23.1 6.7 44 283-326 41-93 (98)
387 PF12325 TMF_TATA_bd: TATA ele 30.2 2E+02 0.0043 25.0 6.5 50 283-332 13-62 (120)
388 KOG3684|consensus 30.1 2E+02 0.0044 30.7 7.6 63 260-324 410-472 (489)
389 PF03670 UPF0184: Uncharacteri 30.0 1.5E+02 0.0033 24.6 5.4 31 297-327 30-60 (83)
390 KOG1899|consensus 29.8 33 0.00071 37.9 2.0 59 3-62 630-688 (861)
391 PRK13922 rod shape-determining 29.8 1.7E+02 0.0038 27.6 6.7 44 288-332 71-114 (276)
392 KOG4687|consensus 29.8 6.2E+02 0.013 25.9 11.3 96 219-314 13-118 (389)
393 PF15556 Zwint: ZW10 interacto 29.7 5.4E+02 0.012 25.1 11.7 41 284-324 139-179 (252)
394 PRK11578 macrolide transporter 29.7 3.9E+02 0.0084 26.2 9.2 27 221-247 105-131 (370)
395 TIGR01834 PHA_synth_III_E poly 29.6 2.2E+02 0.0049 28.8 7.6 43 279-321 267-317 (320)
396 TIGR02284 conserved hypothetic 29.6 3.8E+02 0.0081 23.3 11.5 97 214-327 25-136 (139)
397 KOG0239|consensus 29.5 3.3E+02 0.007 30.1 9.4 27 233-259 238-264 (670)
398 PF13949 ALIX_LYPXL_bnd: ALIX 29.4 4.8E+02 0.01 24.5 10.0 52 275-326 66-117 (296)
399 KOG0962|consensus 29.3 5.8E+02 0.013 30.6 11.7 115 202-320 556-672 (1294)
400 PF08657 DASH_Spc34: DASH comp 29.3 2.9E+02 0.0062 27.0 8.1 86 216-306 174-259 (259)
401 PF10018 Med4: Vitamin-D-recep 29.2 2.2E+02 0.0048 25.8 7.0 41 287-327 23-63 (188)
402 PF04102 SlyX: SlyX; InterPro 29.2 2.5E+02 0.0055 21.7 6.4 37 290-326 15-51 (69)
403 PF07875 Coat_F: Coat F domain 29.0 1.2E+02 0.0027 22.7 4.5 33 213-245 25-57 (64)
404 PF07195 FliD_C: Flagellar hoo 28.5 1.9E+02 0.0041 27.0 6.6 43 285-327 192-234 (239)
405 PRK09841 cryptic autophosphory 28.4 8.1E+02 0.018 26.8 13.5 32 219-250 264-295 (726)
406 PF08287 DASH_Spc19: Spc19; I 28.4 4.4E+02 0.0095 23.7 8.6 20 299-318 133-152 (153)
407 TIGR02977 phageshock_pspA phag 28.3 4.8E+02 0.01 24.1 14.0 12 280-291 79-90 (219)
408 KOG0979|consensus 28.2 5.5E+02 0.012 30.1 11.0 74 222-295 759-844 (1072)
409 PF15456 Uds1: Up-regulated Du 27.9 1.5E+02 0.0032 25.9 5.3 40 287-327 23-62 (124)
410 TIGR02473 flagell_FliJ flagell 27.8 3.5E+02 0.0076 22.4 13.6 34 226-259 17-50 (141)
411 smart00502 BBC B-Box C-termina 27.6 3.1E+02 0.0067 21.7 11.0 17 286-302 50-66 (127)
412 PF11221 Med21: Subunit 21 of 27.6 4.2E+02 0.0091 23.2 11.0 42 289-330 100-141 (144)
413 PF05524 PEP-utilisers_N: PEP- 27.5 71 0.0015 26.5 3.2 49 274-324 11-59 (123)
414 PF15254 CCDC14: Coiled-coil d 27.3 7E+02 0.015 28.6 11.4 38 217-254 382-419 (861)
415 PF08232 Striatin: Striatin fa 27.3 2.1E+02 0.0046 25.0 6.3 38 288-325 27-64 (134)
416 cd04779 HTH_MerR-like_sg4 Heli 27.3 2.5E+02 0.0055 24.5 6.7 40 288-327 76-115 (134)
417 KOG0612|consensus 27.2 1.2E+03 0.025 28.2 13.7 148 152-328 395-543 (1317)
418 TIGR02051 MerR Hg(II)-responsi 27.2 2.4E+02 0.0053 23.8 6.5 56 252-317 52-107 (124)
419 KOG1003|consensus 27.1 5.7E+02 0.012 24.6 10.5 57 269-325 80-148 (205)
420 KOG4603|consensus 27.1 5.5E+02 0.012 24.4 9.7 35 215-249 76-113 (201)
421 KOG4302|consensus 27.1 6.1E+02 0.013 28.3 10.8 112 206-326 145-259 (660)
422 PRK06798 fliD flagellar cappin 27.1 93 0.002 32.2 4.6 32 293-324 379-410 (440)
423 KOG2896|consensus 27.0 7.4E+02 0.016 25.9 11.9 53 270-324 124-176 (377)
424 PRK08032 fliD flagellar cappin 27.0 1.1E+02 0.0025 31.6 5.3 31 294-324 407-437 (462)
425 KOG3678|consensus 26.9 49 0.0011 35.9 2.6 56 3-59 472-528 (832)
426 PRK02793 phi X174 lysis protei 26.9 2.9E+02 0.0063 21.8 6.4 34 292-325 21-54 (72)
427 PF05010 TACC: Transforming ac 26.8 5.5E+02 0.012 24.3 12.5 85 216-328 112-196 (207)
428 PRK00846 hypothetical protein; 26.8 3.2E+02 0.007 22.2 6.7 15 312-326 46-60 (77)
429 COG0172 SerS Seryl-tRNA synthe 26.8 3E+02 0.0065 29.0 8.2 77 244-331 30-106 (429)
430 TIGR03007 pepcterm_ChnLen poly 26.7 6.9E+02 0.015 25.4 12.4 74 235-315 160-233 (498)
431 PF03234 CDC37_N: Cdc37 N term 26.7 5.2E+02 0.011 24.0 11.1 98 218-315 42-160 (177)
432 KOG0933|consensus 26.6 7.6E+02 0.017 29.2 11.7 27 141-167 601-634 (1174)
433 PF04799 Fzo_mitofusin: fzo-li 26.4 2.6E+02 0.0056 26.0 6.9 26 284-309 118-143 (171)
434 PF12795 MscS_porin: Mechanose 26.1 5.4E+02 0.012 24.0 13.3 39 212-250 75-113 (240)
435 PRK00295 hypothetical protein; 26.0 2.9E+02 0.0063 21.6 6.2 38 289-326 15-52 (68)
436 TIGR01069 mutS2 MutS2 family p 26.0 9.6E+02 0.021 26.8 13.7 32 234-265 513-544 (771)
437 COG5185 HEC1 Protein involved 26.0 3.3E+02 0.0071 29.6 8.3 48 219-266 292-350 (622)
438 COG1729 Uncharacterized protei 25.9 1.8E+02 0.0039 28.6 6.1 47 217-264 58-104 (262)
439 KOG0979|consensus 25.8 4.9E+02 0.011 30.5 10.1 88 238-327 257-345 (1072)
440 KOG4571|consensus 25.8 1.9E+02 0.004 29.1 6.2 39 2-40 2-42 (294)
441 PF10243 MIP-T3: Microtubule-b 25.6 23 0.0005 37.1 0.0 61 251-311 426-492 (539)
442 KOG0993|consensus 25.1 8.8E+02 0.019 26.1 11.7 27 306-332 161-187 (542)
443 cd04790 HTH_Cfa-like_unk Helix 25.1 3.1E+02 0.0067 24.7 7.1 33 286-318 74-106 (172)
444 COG1315 Uncharacterized conser 25.0 8E+02 0.017 26.8 11.0 84 216-319 404-487 (543)
445 PF13600 DUF4140: N-terminal d 25.0 1.9E+02 0.004 23.4 5.2 34 284-317 68-101 (104)
446 KOG0978|consensus 24.9 8.6E+02 0.019 27.3 11.6 54 273-326 566-620 (698)
447 TIGR00414 serS seryl-tRNA synt 24.8 4.5E+02 0.0098 27.0 9.0 37 295-331 71-107 (418)
448 TIGR03752 conj_TIGR03752 integ 24.8 8E+02 0.017 26.3 10.9 31 289-319 112-142 (472)
449 PRK10636 putative ABC transpor 24.8 8.7E+02 0.019 26.1 11.5 15 190-204 479-493 (638)
450 smart00503 SynN Syntaxin N-ter 24.7 3.6E+02 0.0079 21.5 10.8 26 283-308 47-72 (117)
451 PF05377 FlaC_arch: Flagella a 24.6 3.3E+02 0.0071 21.0 6.0 40 225-264 3-42 (55)
452 PF09304 Cortex-I_coil: Cortex 24.5 4.7E+02 0.01 22.7 7.7 12 226-237 62-73 (107)
453 PF13166 AAA_13: AAA domain 24.3 8.8E+02 0.019 25.8 11.6 36 289-324 420-455 (712)
454 PRK11519 tyrosine kinase; Prov 24.2 9.6E+02 0.021 26.2 13.1 27 222-248 267-293 (719)
455 PF12958 DUF3847: Protein of u 24.1 1.8E+02 0.0039 24.2 4.9 30 224-253 3-32 (86)
456 PF04849 HAP1_N: HAP1 N-termin 24.1 7.6E+02 0.016 25.0 10.5 97 226-324 94-198 (306)
457 PRK15422 septal ring assembly 24.1 3.7E+02 0.008 22.3 6.6 40 286-325 4-43 (79)
458 PF12958 DUF3847: Protein of u 24.1 2.4E+02 0.0052 23.4 5.6 26 289-314 11-36 (86)
459 PF06103 DUF948: Bacterial pro 24.1 2.3E+02 0.005 22.4 5.5 37 288-324 28-64 (90)
460 cd04784 HTH_CadR-PbrR Helix-Tu 23.9 1E+02 0.0023 25.9 3.6 58 252-317 53-110 (127)
461 PF12017 Tnp_P_element: Transp 23.8 2.8E+02 0.0061 26.7 6.9 32 287-318 12-43 (236)
462 PF07851 TMPIT: TMPIT-like pro 23.8 7.9E+02 0.017 25.1 12.2 40 219-258 1-40 (330)
463 PRK00736 hypothetical protein; 23.7 3.4E+02 0.0073 21.2 6.2 38 289-326 15-52 (68)
464 PRK13411 molecular chaperone D 23.7 9.1E+02 0.02 26.1 11.4 93 215-321 502-597 (653)
465 PF10805 DUF2730: Protein of u 23.7 2.7E+02 0.0058 23.3 6.0 27 286-312 35-61 (106)
466 KOG0289|consensus 23.5 7.3E+02 0.016 26.7 10.2 93 213-305 65-188 (506)
467 PHA02047 phage lambda Rz1-like 23.4 3E+02 0.0066 23.7 6.2 58 219-280 38-95 (101)
468 PRK10807 paraquat-inducible pr 23.1 5.2E+02 0.011 27.7 9.3 74 224-303 415-490 (547)
469 KOG4643|consensus 23.1 9.1E+02 0.02 28.7 11.5 86 224-309 200-294 (1195)
470 cd01109 HTH_YyaN Helix-Turn-He 23.0 2.3E+02 0.0049 23.3 5.4 22 301-322 80-101 (113)
471 PF10174 Cast: RIM-binding pro 23.0 8E+02 0.017 27.8 11.0 28 220-247 133-160 (775)
472 PRK10803 tol-pal system protei 23.0 3E+02 0.0066 26.4 7.0 46 218-263 57-102 (263)
473 COG2959 HemX Uncharacterized e 23.0 8.9E+02 0.019 25.4 11.0 41 287-327 84-124 (391)
474 PF05478 Prominin: Prominin; 22.9 1.1E+03 0.023 26.3 12.7 101 216-325 174-278 (806)
475 PF04859 DUF641: Plant protein 22.9 2.9E+02 0.0063 24.6 6.3 43 288-330 82-124 (131)
476 PF05701 WEMBL: Weak chloropla 22.9 9.2E+02 0.02 25.5 12.9 37 220-256 314-350 (522)
477 PTZ00454 26S protease regulato 22.9 2.6E+02 0.0057 28.5 6.9 39 288-326 24-62 (398)
478 cd04770 HTH_HMRTR Helix-Turn-H 22.8 1.2E+02 0.0026 25.2 3.8 33 284-316 77-109 (123)
479 PF13864 Enkurin: Calmodulin-b 22.8 4.2E+02 0.0092 21.6 7.2 48 216-263 38-94 (98)
480 PF07445 priB_priC: Primosomal 22.7 4E+02 0.0087 24.2 7.4 47 218-264 47-98 (173)
481 cd04776 HTH_GnyR Helix-Turn-He 22.5 3.1E+02 0.0067 23.1 6.2 36 286-321 80-115 (118)
482 PF11068 YlqD: YlqD protein; 22.5 4.3E+02 0.0094 23.3 7.3 35 283-317 17-51 (131)
483 COG3879 Uncharacterized protei 22.5 3E+02 0.0065 27.0 6.8 34 217-250 52-85 (247)
484 PF03233 Cauli_AT: Aphid trans 22.4 1.7E+02 0.0037 27.1 4.9 16 312-327 147-162 (163)
485 KOG3313|consensus 22.4 6.8E+02 0.015 23.8 9.9 56 266-321 107-163 (187)
486 KOG0994|consensus 22.4 1.3E+03 0.029 28.1 12.6 7 49-55 1278-1284(1758)
487 PRK10698 phage shock protein P 22.4 6.6E+02 0.014 23.6 11.0 18 288-305 168-185 (222)
488 PF09059 TyeA: TyeA; InterPro 22.3 69 0.0015 26.6 2.2 18 42-59 61-78 (87)
489 PF03938 OmpH: Outer membrane 22.3 4.9E+02 0.011 22.1 9.9 19 221-239 35-53 (158)
490 PF10211 Ax_dynein_light: Axon 22.3 3.9E+02 0.0086 24.5 7.3 81 248-328 86-169 (189)
491 PF14915 CCDC144C: CCDC144C pr 22.3 8.4E+02 0.018 24.8 12.4 107 219-328 155-263 (305)
492 KOG4674|consensus 22.1 1.3E+03 0.028 29.0 13.0 105 218-327 220-325 (1822)
493 KOG4552|consensus 22.1 2.5E+02 0.0055 27.4 6.1 50 281-330 69-118 (272)
494 PF01496 V_ATPase_I: V-type AT 21.9 30 0.00065 37.6 0.0 104 223-326 11-114 (759)
495 PF08912 Rho_Binding: Rho Bind 21.9 3.7E+02 0.008 21.7 6.1 44 288-331 12-69 (69)
496 cd01282 HTH_MerR-like_sg3 Heli 21.9 2.4E+02 0.0051 23.4 5.3 35 282-316 77-111 (112)
497 PF03978 Borrelia_REV: Borreli 21.7 6.5E+02 0.014 23.3 10.1 71 241-327 16-86 (160)
498 PHA00727 hypothetical protein 21.7 2.4E+02 0.0052 27.4 5.9 48 218-265 12-62 (278)
499 PF15066 CAGE1: Cancer-associa 21.7 1.1E+03 0.023 25.7 12.3 107 219-325 387-503 (527)
500 KOG0884|consensus 21.7 45 0.00097 30.1 1.0 24 258-281 127-150 (161)
No 1
>KOG3501|consensus
Probab=99.92 E-value=1.6e-24 Score=181.06 Aligned_cols=112 Identities=30% Similarity=0.417 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYE 299 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslE 299 (338)
++|+|.+||.|.+++||++..++.|+.+++|.++++.+|.+||..+.+++++|+|||||||++|+..+..+|+++.+.++
T Consensus 1 ~~kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~se 80 (114)
T KOG3501|consen 1 MQKAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSE 80 (114)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 300 EKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
++|++|++++.|||+++.+++.+|||++.++.
T Consensus 81 e~IeaLqkkK~YlEk~v~eaE~nLrellqs~~ 112 (114)
T KOG3501|consen 81 EKIEALQKKKTYLEKTVSEAEQNLRELLQSRR 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999998874
No 2
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.88 E-value=5.3e-22 Score=167.93 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
+|++++.+.++|. +|++++.+.+|+++++++++++++|.+||+.||+|++||++||+|||++|+++++++|+++++
T Consensus 6 ~~~~q~~~~~~q~----lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E 81 (121)
T PRK09343 6 PPEVQAQLAQLQQ----LQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKE 81 (121)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 3455555555555 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
.++.+|+.|+++++++++++++++.+|++++++-
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999763
No 3
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.85 E-value=1.4e-20 Score=155.87 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
||++++.+.++|. ++++++.+.+|+..++++++++++|.+||+.||+|++||++||+|||..|+++++.+|+++++
T Consensus 2 ~~~~q~~~~~~q~----~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e 77 (110)
T TIGR02338 2 PPQVQNQLAQLQQ----LQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKE 77 (110)
T ss_pred CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHH
Confidence 5677777777766 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
.++.+|++|+++.++++++++++|++|++++.
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999985
No 4
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.1e-19 Score=150.40 Aligned_cols=111 Identities=19% Similarity=0.276 Sum_probs=106.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki 295 (338)
-||+++..+.++|+ ++++++.+..|+++++.++++++.++.||+.||+|++|||.||..||+.++++++++|+++.
T Consensus 4 lpp~~q~~l~q~Qq----Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~ 79 (119)
T COG1382 4 LPPEVQAQLAQLQQ----LQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERK 79 (119)
T ss_pred CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHH
Confidence 36889999888888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+.++.+|++|++|++.+++++++++..|+.+++..
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998764
No 5
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.79 E-value=6.7e-19 Score=140.93 Aligned_cols=105 Identities=27% Similarity=0.453 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHH
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKD 304 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~ 304 (338)
++++.++..+++++..+.+|+.+++++++++++|.+||..+|+++++|++||+|||..|++++++.|+++++.++.+|++
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 305 IESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 305 LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
|+++.+++++++++++.+|++++++
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987654
No 6
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.70 E-value=2.5e-16 Score=129.27 Aligned_cols=104 Identities=16% Similarity=0.285 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHH
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKD 304 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~ 304 (338)
+++..+++.++++++.+.+++..++.++++...+.+||..+|+|+++|++||.|||..|++++...|+++++.++.+++.
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 305 IESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 305 LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
++++.+++++++++++.+|+++.+
T Consensus 82 l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 82 LERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 7
>KOG4384|consensus
Probab=99.70 E-value=1.1e-17 Score=163.52 Aligned_cols=70 Identities=34% Similarity=0.512 Sum_probs=65.8
Q ss_pred ChhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCcccCCc
Q psy14557 1 MSKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70 (338)
Q Consensus 1 ~~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~~~~ 70 (338)
|..+|++|||++|++.||.||||+||+|++|+|+||++|||.||+||+|||.||++|.+++++.+..+..
T Consensus 218 ~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~d~~~~~~~~~ 287 (361)
T KOG4384|consen 218 LEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEIDSGSEQVGEN 287 (361)
T ss_pred HHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccccCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999998866633
No 8
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.04 E-value=1.1e-10 Score=87.00 Aligned_cols=57 Identities=32% Similarity=0.397 Sum_probs=54.6
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~ 58 (338)
..+|+++|+.+|.+.|..|||+.++.+..|.++||.++||+++.||+|||.|++.|+
T Consensus 10 ~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 10 AEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999999999999999999999999874
No 9
>KOG3478|consensus
Probab=98.96 E-value=2.2e-08 Score=85.44 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
.+++.+.+.-.+++.+|..+.......+.++.++.+....++||+-|.+|++|||-+|-.+|+++.++......++++-+
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLVILIRLNTHCAS 335 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a~ 335 (338)
+.+|+.++++..-+++++.+..+.|-.+-..-+.+|.
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~~ 118 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAAP 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999988777766655543
No 10
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=98.95 E-value=6.4e-10 Score=82.50 Aligned_cols=56 Identities=32% Similarity=0.335 Sum_probs=52.6
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~ 58 (338)
..+|+.+||++|.+.| .+||.|.+.|..|.++||.++||+++.||.||+.+++.|+
T Consensus 9 ~~WL~~~~l~~y~~~F-~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 9 SEWLKSLGLEQYAENF-EKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp HHHHHHTTGGGGHHHH-HHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH-HcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 4689999999999999 9999999999999999999999999999999999999874
No 11
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=98.86 E-value=1.9e-09 Score=77.95 Aligned_cols=56 Identities=32% Similarity=0.337 Sum_probs=52.8
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~ 58 (338)
..+|..+|+.+|...|..||| |.+.|..|.++||.++||.+|.||+||+.+++.|.
T Consensus 8 ~~wL~~~~~~~y~~~f~~~~i-~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 8 AEWLESLGLGQYADNFRENGI-DGDLLLLLTEEDLKELGITLPGHRKKILKAIQKLK 63 (63)
T ss_pred HHHHHHcChHHHHHHHHHcCC-CHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 468999999999999999999 99999999999999999999999999999998763
No 12
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=98.82 E-value=6e-08 Score=80.21 Aligned_cols=102 Identities=15% Similarity=0.262 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------------CCchhhhhhc-ccccc
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ-----------------------PTTNTYESVG-RMFIK 281 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP-----------------------eDTkVYKSVG-RMFVl 281 (338)
++..++...+++++.+.+++.++...+.+.+.+..+|..++ ++.+||..|| ..||.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve 82 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence 44555555666777777777777777777777777777776 7889999999 99999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.+.++..+-++++++.++.+++.++++...+++++.+++..|+++.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988753
No 13
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=98.71 E-value=1.2e-08 Score=74.24 Aligned_cols=58 Identities=28% Similarity=0.276 Sum_probs=53.6
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.+|+.+|...|..+||+..+.+...+++||.++||.+|.||.||+.+++.|++
T Consensus 10 ~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 10 ADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred HHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999886666999999999999999999999999875
No 14
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=98.61 E-value=1.3e-06 Score=74.74 Aligned_cols=109 Identities=14% Similarity=0.217 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCchhhhhhc---------------------
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ---PTTNTYESVG--------------------- 276 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP---eDTkVYKSVG--------------------- 276 (338)
+..+.+++.++...+++++.+.+++..++..+.+...+.+.|+.|+ ++..+|-++|
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Confidence 4456677777777999999999999999999999999999999987 7889999999
Q ss_pred ccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 277 RMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 277 RMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..||..+.++.++.|+++++.++..+++++++...+.+++++.+..++++...
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999987654
No 15
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=98.03 E-value=9.7e-05 Score=61.90 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--chhhhhhcc-cccc--------------------
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPT--TNTYESVGR-MFIK-------------------- 281 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeD--TkVYKSVGR-MFVl-------------------- 281 (338)
.+++.++...++++..+.+++..+...+.+.+.+.+.|+.+++. ..++=++|. +||.
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 45666777788888888888888999999999999999999754 556667765 4444
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
.+.++.++-|+.+++.++..++.|++....+.+++...+..++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777777777777777777666666666666665544
No 16
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=97.94 E-value=0.00019 Score=60.36 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------------------Cchhhhhhcc-cccc
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQP-----------------------TTNTYESVGR-MFIK 281 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPe-----------------------DTkVYKSVGR-MFVl 281 (338)
+++.++...++++..+.+|+..+...+.+.+.+.+.|+.+++ ..+++=.||- .||.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 445555556666666666777777777777777777777754 2344555555 8999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.+.++.++-++.+++.++..++.++++...+.++++..+..++++.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999888753
No 17
>KOG4098|consensus
Probab=97.87 E-value=0.0003 Score=62.04 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIE 306 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LE 306 (338)
++.++...+++++.+.+.+..++.++++=.+..+-|..++++-++||.||-.+|..++.+++=.|+..++-++.-|+.|.
T Consensus 20 v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~ 99 (140)
T KOG4098|consen 20 VVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLT 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHH
Confidence 45667778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14557 307 SEKAIILVPALKIARY 322 (338)
Q Consensus 307 KQkeyLEKqLeelQ~~ 322 (338)
.+.....+.|.+-+..
T Consensus 100 ~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 100 DQLVQKGKELNKFKKD 115 (140)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888888776554
No 18
>PRK14011 prefoldin subunit alpha; Provisional
Probab=97.87 E-value=0.00045 Score=61.08 Aligned_cols=110 Identities=12% Similarity=0.167 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcc-------------------
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGR------------------- 277 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGR------------------- 277 (338)
++++++.+.+|+. .++|++.+..++.+++..+.+..-+.+-|+.++++..+.=++|-
T Consensus 2 ~~elq~~~~~l~~----~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG 77 (144)
T PRK14011 2 NEELQNQFMALEV----YNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVG 77 (144)
T ss_pred cHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence 5788888888877 99999999999999999999999999999888766666655554
Q ss_pred --cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 278 --MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 278 --MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
.||..+.++.++-++.+++.++...++|....+.+.+.+.+++..|+..++..
T Consensus 78 tGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~ 132 (144)
T PRK14011 78 SDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAI 132 (144)
T ss_pred CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888899999999999999999999999999888888888887777665543
No 19
>KOG1760|consensus
Probab=97.48 E-value=0.0017 Score=56.89 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=83.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki 295 (338)
.|...-+.|..+-.++-+..+.++..+.|++.++-...++.|..++=..+ + | -||.+|+.-+.+.+.+.|++..
T Consensus 17 EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~I----p-~-~vGdvF~~~~~~~~~~~LEe~k 90 (131)
T KOG1760|consen 17 EDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDI----P-F-KVGDVFIHVKLDKLQDQLEEKK 90 (131)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcccccc----c-e-ehhhhheeccHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777666666655443222 2 4 5999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+.++..|..|+.+.+.++.++.++-..|=.-.
T Consensus 91 e~l~k~i~~les~~e~I~~~m~~LK~~LYaKF 122 (131)
T KOG1760|consen 91 ETLEKEIEELESELESISARMDELKKVLYAKF 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998877665433
No 20
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.023 Score=50.68 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCchhhhhhcc---------------------c
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL---QPTTNTYESVGR---------------------M 278 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL---PeDTkVYKSVGR---------------------M 278 (338)
-+.+|-.+++..++++..+.+++..+...+.+.+-+.+-|+.+ ..+..+-=+||. .
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~ 86 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGY 86 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCce
Confidence 3444444444488888888888888777766666666555555 322244444443 4
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 279 FIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 279 FVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
++..+.++.++-|+++++.++..+++++.....|..++...+..++++-
T Consensus 87 ~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 87 YAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred eeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999998888888888888887764
No 21
>KOG0196|consensus
Probab=96.90 E-value=0.00054 Score=74.59 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=55.9
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.|+|..|.+.|..+||.+++...+|.-+||..|||+-+.|-+|||..+|.++.
T Consensus 927 ~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~m~~ 984 (996)
T KOG0196|consen 927 GDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQAMRA 984 (996)
T ss_pred HHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999876
No 22
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=96.60 E-value=0.0087 Score=49.24 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=52.5
Q ss_pred CCchhhhhhcc-cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 267 PTTNTYESVGR-MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 267 eDTkVYKSVGR-MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
+..+|+=+||- .||..+.++.++-++.+++.++..++.++++...++.++..++..|+++..
T Consensus 57 ~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 57 DTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555554 588999999999999999999999999999999999999999999887653
No 23
>PRK01203 prefoldin subunit alpha; Provisional
Probab=96.23 E-value=0.12 Score=45.39 Aligned_cols=95 Identities=11% Similarity=0.254 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCchhhhhhcc---------------------ccccc
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ--PTTNTYESVGR---------------------MFIKT 282 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP--eDTkVYKSVGR---------------------MFVlt 282 (338)
++..++.-.++|+..+.+|+++++..+.+..-+.+-|..++ .+..+.=++|- .||..
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 34455555777888888888888888888888888887763 44444444443 37777
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
+.++-++.|+++++.++.-+....++.+.++..+.++-
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666666666666666666665554
No 24
>PRK11637 AmiB activator; Provisional
Probab=95.49 E-value=0.38 Score=48.33 Aligned_cols=90 Identities=8% Similarity=0.147 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies 297 (338)
.++++.+.+++.++.+.+++++.+..++..++.++...+.-+.++ ..-+..++.+++.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~----------------------~~~i~~~~~~i~~ 100 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA----------------------SRKLRETQNTLNQ 100 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 467777777777777777777777777776666655544443333 3445667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
++.+|+.++++.+.+++++++.++.|.+.++.
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777766643
No 25
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=95.33 E-value=0.1 Score=44.64 Aligned_cols=105 Identities=13% Similarity=0.212 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhh---hcccccccCc-----------hHHH---
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYES---VGRMFIKTPH-----------PEVV--- 288 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKS---VGRMFVltdK-----------deI~--- 288 (338)
+.+.++...+++++.+..+++.+...+........|+...-+.-+..+. -+.+||.-.. +.|+
T Consensus 3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~l 82 (140)
T PRK03947 3 ESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSL 82 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEc
Confidence 4456777799999999999999999999999999999887544444442 2335555443 2222
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 289 -------VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 289 -------eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
..+++-++.++.+++.|+++.+.|++.+.+.++++.++.+..
T Consensus 83 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 83 GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999999988876543
No 26
>PRK09343 prefoldin subunit beta; Provisional
Probab=95.10 E-value=0.23 Score=42.47 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~L 305 (338)
.|+.+++..-.+++.+..+++.+..+++..+....|....-+.-.--.+=.++|-..-+==|..+..+-.+.++++++.+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 57777777888888888888888888888888888877664443333444677877777778888888888888899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 306 ESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 306 EKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+...+.|+++.+.+++.+.++-...
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888765544
No 27
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=95.03 E-value=0.12 Score=42.50 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTL--TEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTl--kELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
.+...|+.||.++....++++.+.+|+...+..+....+.. ..+-.+-.++=|-+++..+ ....++-++.++.+++
T Consensus 3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea--~~~Le~~~e~le~~i~ 80 (105)
T cd00632 3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEA--RTELKERLETIELRIK 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHH--HHHHHHHHHHHHHHHH
Confidence 34556666777666677777666666666666666555542 2222222334444444442 3445555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ 320 (338)
.++..++.++++...+++++.+++
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777766654
No 28
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=94.91 E-value=0.17 Score=42.11 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKA 310 (338)
Q Consensus 231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQke 310 (338)
+++...+++.+..+++.+..++...+....|....-+.-.--.+=+++|...-.-=|....++-+..++.+++.++...+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666655322222223355666666666666666666666777777776666
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy14557 311 IILVPALKIARYLVILIRL 329 (338)
Q Consensus 311 yLEKqLeelQ~~LrElLr~ 329 (338)
.|+++.+.++.++.++-+.
T Consensus 85 ~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 85 TLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777666666666665443
No 29
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=94.84 E-value=0.038 Score=42.33 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=44.7
Q ss_pred hhhhhhhh--hhhhHhhhhhcCccc-HHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMEL--KKEHMSVFVLNGYED-LESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~--L~ey~s~~l~NGydd-Le~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..||..|| +.+|.+.| ++ .+.|-...-..|.++|| .|.+|+-||..++..+.
T Consensus 2 ~tFL~~IGR~~~~~~~kf-----~~~w~~lf~~~s~~LK~~GI-p~r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 2 ETFLKLIGRGCEEHAEKF-----ESDWEKLFTTSSKQLKELGI-PVRQRRYILRWREKYRQ 56 (57)
T ss_pred HHHHHHHcccHHHHHHHH-----HHHHHHHHhcCHHHHHHCCC-CHHHHHHHHHHHHHHhC
Confidence 56899998 99999987 33 67777899999999999 99999999999987653
No 30
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=94.48 E-value=0.14 Score=42.27 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhh-----------------------hhcccccccC-chHHH
Q psy14557 233 DTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYE-----------------------SVGRMFIKTP-HPEVV 288 (338)
Q Consensus 233 eTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYK-----------------------SVGRMFVltd-KdeI~ 288 (338)
+...+++.+..++..+.+.+....-...|+..+-+.-..+. ..++++|.-- ---+.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve 82 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence 35556666666777777777777777777776655555554 2233333333 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..+++-.+.++.+++.|+++.+.|++.+.++++++.++...
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777777766665543
No 31
>KOG0507|consensus
Probab=94.29 E-value=0.0098 Score=64.57 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=58.4
Q ss_pred hhhhhhhhhhhHhhhhhcCcccH-HHhh--cCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCccc
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDL-ESFC--EIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDE 67 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddL-e~~~--~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~ 67 (338)
+.++++|+.+|...+..|||+.+ .+++ +|.++++..+||.+|-||+|++.|...++......-+.
T Consensus 302 q~sd~~~~~~~q~~~~~n~~~gy~~sl~sn~i~~qpps~~g~~~~l~~~ks~~a~ss~p~eg~~l~~g 369 (854)
T KOG0507|consen 302 QWSDSIGLPQYQPKLSQNGFDGYPHSLGSNVIEYQPPSIIGILRSLHRQKSLQALSSLPKEGPYLTDG 369 (854)
T ss_pred cCcccccccccccccccccccccCccccccchhhCCHHHhccCCCCCcchhhhhhhcccccccccccC
Confidence 56789999999999999999999 6666 99999999999999999999999999999876655433
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.95 E-value=0.91 Score=49.36 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCchhhhhhcccccccCchHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL---------QPTTNTYESVGRMFIKTPHPEVVVNLEKK 294 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL---------PeDTkVYKSVGRMFVltdKdeI~eeLeEk 294 (338)
-.+||.|+..+.++.+.=++.++++|+.+++-+....+|++- .+....-+++... ...+.+--+.++.+
T Consensus 469 ne~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~--~~~r~e~~e~~r~r 546 (697)
T PF09726_consen 469 NEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQA--QATRQECAESCRQR 546 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccc--hhccchhHHHHHHH
Confidence 345566666666666666666677777766655554444432 3333444444432 44566777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
...+|.+++.|+...+-.|.++..++.+++++-.
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888888865543
No 33
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=93.68 E-value=0.55 Score=39.36 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchH--H-----H----------------
Q psy14557 232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPE--V-----V---------------- 288 (338)
Q Consensus 232 ieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKde--I-----~---------------- 288 (338)
.+.+++++.+..+++.+...+.....+..|+...-+--...+.-....+..|... . .
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 3578889999999999999999999999999887533333322111222222211 1 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
..+++-++.++.+++.|+++.+.|++.+.+.++++..+..
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999998887654
No 34
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=93.39 E-value=0.31 Score=38.90 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
++...|.+++.++....+++..+..++...+..+.+......+-.-.-.=.++|=..-+--+.....+-++.++++++.+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888777772211111244555566667777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLee 318 (338)
+..++.++++.+.+++.+.+
T Consensus 82 ~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764
No 35
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.14 Score=45.76 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhc---ccccccCchH-----------------
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVG---RMFIKTPHPE----------------- 286 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVG---RMFVltdKde----------------- 286 (338)
.+..+.++..+++.+..|++.+.+++-....+..|+...-+.-..-++.| .++|-..-..
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG 83 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG 83 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence 35667789999999999999999999999999999999988889999999 5776544322
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 ----VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 287 ----I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+..+.++-++.++.+++.|++..+.++..+.++-..+..+
T Consensus 84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l 127 (145)
T COG1730 84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQL 127 (145)
T ss_pred CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223444444555555555554444444444444444443
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.87 E-value=3.1 Score=40.07 Aligned_cols=103 Identities=12% Similarity=0.213 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcc-cccccCc----hHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGR-MFIKTPH----PEVVVNLEK 293 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGR-MFVltdK----deI~eeLeE 293 (338)
.+.+.+.+++..+-+...|+......++.....+..++..+ ... .+.+-|+..++ +-+...+ .+-+.+|.+
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---~~v-~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---SAV-KDERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666555555555444 333 46677887776 3333322 122223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+.+.++..+..+..+...+++.+.+.+..+.+
T Consensus 118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 118 EIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.83 E-value=2.8 Score=39.19 Aligned_cols=83 Identities=8% Similarity=0.085 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
.|.++-.+-++|+++.++++++..++.+..+...+++.. ..+ .+..+.+|+++.+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~---~~~----------------------~~~~~~~L~~~n~ 142 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK---VAQ----------------------SDSVINGLKEENQ 142 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH----------------------HHHHHHHHHHHHH
Confidence 356667777777777777777777776655444333221 111 2233566888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
.+.+++..++++...++.++..+++.++
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887777654
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=92.80 E-value=2.4 Score=45.62 Aligned_cols=97 Identities=15% Similarity=0.268 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYE 299 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslE 299 (338)
+...+.+++.+....+.++..+...+..++..+...+-..++|....+ +.-.||+=....-+.++++++..+++.++
T Consensus 389 l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~---~Cp~c~~~L~~~~~~el~~~~~~ei~~l~ 465 (880)
T PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG---KCPVCGRELTEEHRKELLEEYTAELKRIE 465 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCcCCchhHHHHHHHHHHHHHHHH
Confidence 344444555555555666666666666666666676666666665433 44448888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14557 300 EKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeel 319 (338)
.++..|+++.+.+++.++..
T Consensus 466 ~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 466 KELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888777777666555543
No 39
>PRK11637 AmiB activator; Provisional
Probab=92.66 E-value=2.7 Score=42.30 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
...+++++.+..+.++...+.|+.++..++..+.+++.+..++.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~ 211 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLE 211 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777777777766666655555555443
No 40
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=92.37 E-value=0.86 Score=38.34 Aligned_cols=97 Identities=15% Similarity=0.274 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhh----------hcc-cccccCchH-------------HH
Q psy14557 233 DTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYES----------VGR-MFIKTPHPE-------------VV 288 (338)
Q Consensus 233 eTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKS----------VGR-MFVltdKde-------------I~ 288 (338)
..+.+++.+..+++.+..++...+....|+..+-+.-..+.. +|. +|+.....+ +.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 467788888889999999999999999999888666666654 222 444443221 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..+.+-++.++.+++.|+++.+.|++.+.++++++..+...
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 123 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAE 123 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999988877654
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.16 E-value=1.8 Score=44.02 Aligned_cols=36 Identities=8% Similarity=0.336 Sum_probs=22.9
Q ss_pred hhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 273 ESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKA 310 (338)
Q Consensus 273 KSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQke 310 (338)
..||+.|--. +.....|++.++.++.+++.++....
T Consensus 288 p~C~~~~~~~--~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 288 PTCTQQISEG--PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred CCCCCcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467766544 66666666666666666666666665
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.59 E-value=5 Score=37.68 Aligned_cols=100 Identities=10% Similarity=0.170 Sum_probs=73.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHH
Q psy14557 214 DTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEK 293 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeE 293 (338)
....+.+++...+....-..+|+++.....|++.+..+++....-.+-|+. | ..-.+..++.+++
T Consensus 20 a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-------~--------~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 20 AATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV-------Y--------NEQLERQVASQEQ 84 (251)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--------HHHHHHHHHHHHH
Confidence 345567888888888888889999999999999988888777655555543 2 1234567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
+++.++.+|+.+++.+..|.--+.+..+.|++.+.
T Consensus 85 el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 85 ELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888888887777777777777777776554
No 43
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=90.99 E-value=11 Score=34.97 Aligned_cols=46 Identities=2% Similarity=0.057 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
-+...+.||+..+.+.++.+..+.++...+++++..++-...+++.
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999888877766655543
No 44
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.87 E-value=7.7 Score=35.38 Aligned_cols=47 Identities=6% Similarity=0.133 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
.-|.+.+.+++..+..+++.+..+.+....+++.+..++-...++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999999999888887766666554
No 45
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=2 Score=37.47 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccc------ccccCchHHHHHHHHHHHHHHHHHH
Q psy14557 230 KMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRM------FIKTPHPEVVVNLEKKVKSYEEKIK 303 (338)
Q Consensus 230 KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRM------FVltdKdeI~eeLeEkieslEerIK 303 (338)
.++..-.+++.+..|++.+-.+++-++.-++|+.+. -.-+.+. |-..---=|....++-++.+++++.
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~a------l~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E 80 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKA------LEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKE 80 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHH
Confidence 344455566666677777777777777776665543 2223332 2222222234455666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 304 DIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 304 ~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
.|+.+.+.|+++-+.+++.|.++-..
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777665443
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.17 E-value=3.9 Score=39.42 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 234 TKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 234 TQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
....+..+...+..++.+....+....++
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.71 E-value=3.5 Score=41.97 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
-..+..+..+..+.+.+++.++.++..++..+++..-..+++..+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el 342 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLEL 342 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666665555554444444444443
No 48
>PRK01156 chromosome segregation protein; Provisional
Probab=89.52 E-value=8.6 Score=42.02 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEK 301 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEer 301 (338)
+.+.+++.++.+++..+..+.+++..++..+.....+..+|+ .- ++=-.||+-.=..-+.++++++.++++.++.+
T Consensus 409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~~---~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~ 484 (895)
T PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQ---SVCPVCGTTLGEEKSNHIINHYNEKKSRLEEK 484 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC---CCCCCCCCcCChhhHHHHHHHHHHHHHHHHHH
Confidence 344666666777777777777777777777777776666666 21 23333454433444667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 302 IKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
++.|+++...+.+.++.+...+..
T Consensus 485 i~~l~~~~~~l~~~~~~~~~~~~~ 508 (895)
T PRK01156 485 IREIEIEVKDIDEKIVDLKKRKEY 508 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666666655444443
No 49
>KOG0996|consensus
Probab=89.51 E-value=5 Score=46.24 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTT 269 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDT 269 (338)
.+++.|+++..+-...+++++.+.+++..++.++..+.....|+.+.|++.
T Consensus 388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 566777788888888889999999999999999999999999999998754
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=89.51 E-value=5.2 Score=43.13 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQ 244 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~Q 244 (338)
.++.+.+.+++.++..+.+++..+..+
T Consensus 203 ~~l~~ei~~l~~e~~~l~~~~~~~~~~ 229 (880)
T PRK03918 203 EEVLREINEISSELPELREELEKLEKE 229 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444433
No 51
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.04 E-value=4.9 Score=41.47 Aligned_cols=46 Identities=7% Similarity=-0.071 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..++..-+.++...+..++..++.+.+.+++++++++++|..+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3455566677778888888888888888888888888888877653
No 52
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.96 E-value=2 Score=33.00 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
+++|+.++..++..+.+++++-+.|.+.++++.+.++.+|.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999885
No 53
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.92 E-value=11 Score=40.56 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhhhhhcccc-cccCchHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL-QPTTNTYESVGRMF-IKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL-PeDTkVYKSVGRMF-VltdKdeI~eeLeEkies 297 (338)
-++.+.+||.++.++..++..+..++..+...++.+.-...+...- ..-..-|+--.|++ ++.+.+.-+..|+.-++.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3455555555555555555555555444444443332222222111 11123455555543 566778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
...++..|..|=+.....+.+.-+.|++...
T Consensus 406 s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRAPLIEEYRRLKEKAS 436 (594)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999888877777666666665443
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.76 E-value=10 Score=37.22 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=5.5
Q ss_pred eecCccccccc
Q psy14557 194 VSNNSSLINHK 204 (338)
Q Consensus 194 ~s~~~~~~~~~ 204 (338)
..+||.|++-+
T Consensus 99 ~~~nPpLf~EY 109 (325)
T PF08317_consen 99 YESNPPLFREY 109 (325)
T ss_pred hhcCCHHHHHH
Confidence 44555555443
No 55
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.76 E-value=9.3 Score=33.91 Aligned_cols=38 Identities=11% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ 256 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ae 256 (338)
+.++.+.+++.++.+.++.+.....+...++.......
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444445555555544444444444444444443333
No 56
>PRK09039 hypothetical protein; Validated
Probab=88.40 E-value=11 Score=37.51 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
.+.+.+.+....+.+.+.++..+.+||++++.++..++-.+.+++
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777778888888888777554444444443
No 57
>PRK10698 phage shock protein PspA; Provisional
Probab=87.84 E-value=22 Score=33.36 Aligned_cols=46 Identities=4% Similarity=0.055 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
-+...++||+..+.++.+.+..+.++...+++++..++-...+...
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999888888877766655543
No 58
>PRK02224 chromosome segregation protein; Provisional
Probab=87.28 E-value=13 Score=40.35 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=9.0
Q ss_pred CChHHHHHHHHHHhh
Q psy14557 42 LNPEHRAKILAAVQV 56 (338)
Q Consensus 42 ~dp~hR~rlL~Av~~ 56 (338)
.|-.=+.=||.|+-.
T Consensus 31 ~Ng~GKStil~ai~~ 45 (880)
T PRK02224 31 VNGSGKSSLLEACFF 45 (880)
T ss_pred CCCCCHHHHHHHHHH
Confidence 344556667777665
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.06 E-value=14 Score=36.22 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyL 312 (338)
|++.++++.+.++..-..++++.+.|
T Consensus 149 ile~qk~dk~~Le~kq~~l~~~~e~l 174 (265)
T COG3883 149 ILEQQKEDKKSLEEKQAALEDKLETL 174 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 60
>PRK02224 chromosome segregation protein; Provisional
Probab=86.97 E-value=8.2 Score=41.87 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAI 311 (338)
Q Consensus 232 ieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkey 311 (338)
.+++.++..+...+..++..++..+..++++..+=.+..+ --||+-|=..+..++++++.+.++.+..+++.|+.+.+.
T Consensus 415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~C-p~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 493 (880)
T PRK02224 415 EELREERDELREREAELEATLRTARERVEEAEALLEAGKC-PECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555555532123333 348887777777777777777777777777777766666
Q ss_pred HHHHHHH
Q psy14557 312 ILVPALK 318 (338)
Q Consensus 312 LEKqLee 318 (338)
+++.++.
T Consensus 494 ~~~~~e~ 500 (880)
T PRK02224 494 VEERLER 500 (880)
T ss_pred HHHHHHH
Confidence 5555543
No 61
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.39 E-value=28 Score=33.15 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
-|.+.+.+++..+.+..+.+..+.....++++++..++.-.+++..
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999999999999999999888877776654
No 62
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=86.26 E-value=15 Score=29.25 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies 297 (338)
++|.+.+.++..+.......+..+...+..++.+...+. .++.. .|. -=+.|+..-+..++.+|++..+.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~I~~------~f~-~l~~~L~~~e~~ll~~l~~~~~~ 72 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVE---AQIKA------AFD-ELRNALNKRKKQLLEDLEEQKEN 72 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777666666654433322 22211 111 11345666777777777765543
Q ss_pred H
Q psy14557 298 Y 298 (338)
Q Consensus 298 l 298 (338)
.
T Consensus 73 ~ 73 (127)
T smart00502 73 K 73 (127)
T ss_pred H
Confidence 3
No 63
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.85 E-value=15 Score=40.21 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.7
Q ss_pred hHHHHHH
Q psy14557 44 PEHRAKI 50 (338)
Q Consensus 44 p~hR~rl 50 (338)
|....-|
T Consensus 535 ~~y~~Ai 541 (1164)
T TIGR02169 535 ERYATAI 541 (1164)
T ss_pred HHHHHHH
Confidence 4443333
No 64
>KOG0804|consensus
Probab=85.62 E-value=15 Score=38.81 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=7.7
Q ss_pred CCCCCCCCCCccc
Q psy14557 76 SSFSGKHARNNLD 88 (338)
Q Consensus 76 ~~~~~~~~~~~~~ 88 (338)
..|+|| +=|.|+
T Consensus 133 ~efNGk-~Fn~le 144 (493)
T KOG0804|consen 133 EEFNGK-QFNSLE 144 (493)
T ss_pred HHcCCC-cCCCCC
Confidence 567888 566653
No 65
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=84.92 E-value=21 Score=39.26 Aligned_cols=32 Identities=6% Similarity=0.167 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKN 251 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlEre 251 (338)
+.+.+.+++.++...+.++..+..++..++.+
T Consensus 796 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~ 827 (1164)
T TIGR02169 796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544444444444444443333
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.83 E-value=22 Score=31.30 Aligned_cols=39 Identities=8% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
++...+..++.+++.+..++..++..+..+.-.+.+-.+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444455555555555555555555555555554444
No 67
>KOG4374|consensus
Probab=84.56 E-value=0.65 Score=44.12 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=48.1
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
.++|..+||.+|...|.+.= .|.+.+..|.|+||-.+||+--.-|.||+.|...+++.
T Consensus 155 l~~L~~lglg~y~~~f~~~e-vd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~~ 212 (216)
T KOG4374|consen 155 LMELGILGLGAYWKMFEAIE-VDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRRS 212 (216)
T ss_pred HHHHHHHhHHHHHHHHHHHH-HHHHHHHhcccchhhhhcccccCcchhhhhhhhccccc
Confidence 46788899999998887764 35566778999999999999999999999999888764
No 68
>KOG0995|consensus
Probab=83.35 E-value=9.2 Score=41.11 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccc--cccCchHHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMF--IKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMF--VltdKdeI~eeLeEkiesl 298 (338)
.+.|.-+-.++...+.+...+..|++.++..-.+.+.+.+.-..|.+|...|++.=.-+ .....+..++.|++.++.-
T Consensus 227 ~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 227 EKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444455567778888888889999888888899999999999999999998754432 2334667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLe 317 (338)
++++++|+++...|.++++
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777665
No 69
>KOG0250|consensus
Probab=83.34 E-value=26 Score=40.28 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCCCCCCCCCcceeEeeccccccccccCCCCCcccceeec
Q psy14557 110 NSSLPYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQ 149 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.|++|+.-|.+.-.=.|. ||.|.+.---.|.--.-|||-
T Consensus 554 vs~~~~~~y~~~~~p~~~-~pTil~~le~ddp~V~N~LID 592 (1074)
T KOG0250|consen 554 VSSFTPFDYSVGRNPGYE-FPTILDALEFDDPEVLNVLID 592 (1074)
T ss_pred EecCCccccccccCCCCC-CCceeeeeecCChHHHHHhhh
Confidence 688888888877766676 888877765555544455553
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.25 E-value=14 Score=34.74 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQV 245 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~Qi 245 (338)
|++++.+.+++.++.++.++.+...+++
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l 123 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEM 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5666666666666666666655433333
No 71
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.57 E-value=16 Score=35.11 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhh-------h---hhcccccc------cCchHHH
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTY-------E---SVGRMFIK------TPHPEVV 288 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVY-------K---SVGRMFVl------tdKdeI~ 288 (338)
.++|.++..+.+++.....-++.||.++-.++-....-...+++..+- . ..|+.==. .+-..|+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 567777777777777777777788888777775533333333322221 1 11221111 3566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.=+..+.+.+..|...||.+......++..++.++..+-
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777666543
No 72
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.25 E-value=14 Score=42.68 Aligned_cols=38 Identities=5% Similarity=0.078 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHT 255 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~a 255 (338)
|++++.+.++..++.+...++..+...+..+..++..+
T Consensus 747 p~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 747 PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56677777777766666666666666666555555444
No 73
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.00 E-value=22 Score=37.88 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=57.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki 295 (338)
...++.+.+.+++.++.+.+.++..+..++..++.++..++-.+.++.. -++.-|..+... .++|+.++
T Consensus 203 ~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~------~~~~~GG~~~~~-----r~~Le~ei 271 (650)
T TIGR03185 203 LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK------KFRSEGGDLFEE-----REQLERQL 271 (650)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchHHHH-----HHHHHHHH
Confidence 4457888889999999999999999999999999998888877777765 355556543322 34555555
Q ss_pred HHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEK 309 (338)
Q Consensus 296 eslEerIK~LEKQk 309 (338)
+.++.+.+..+++.
T Consensus 272 ~~le~e~~e~~~~l 285 (650)
T TIGR03185 272 KEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444444
No 74
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=81.91 E-value=17 Score=32.68 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
.+-.+.++++++.++.++++.++..+.|.+|.+.+++
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555555555555554
No 75
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.91 E-value=42 Score=33.00 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+.-++..+.+-+.|+.++..++++++++.....+
T Consensus 147 k~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e 180 (265)
T COG3883 147 KKILEQQKEDKKSLEEKQAALEDKLETLVALQNE 180 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666555443
No 76
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.89 E-value=44 Score=30.39 Aligned_cols=94 Identities=12% Similarity=0.229 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHH------HHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVV------VNL 291 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~------eeL 291 (338)
+..++.+..++..+.++..++..+..+...++..-+.+..-+.|++.= |-.=+.++|+ .++
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~-------------f~~ysE~dik~AYe~A~~l 89 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN-------------FDRYSEEDIKEAYEEAHEL 89 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hcccCHHHHHHHHHHHHHH
Confidence 577888899999999999999999999999999999998888777642 2222222322 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
.-+...+.++.+.|..++..|+.++..+..-|.
T Consensus 90 Q~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 90 QVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666665555444
No 77
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.77 E-value=37 Score=34.51 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
.+|..+...++.+++.++.+.+.|++++++.+..+.
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555544444433
No 78
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.37 E-value=22 Score=33.94 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKI 302 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerI 302 (338)
++.++..|..+...-...+......++.+-+.++=..+|.+.|-.+ ||+ ..+.+..+..++..+|.-|
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~E--------r~~----h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQE--------RMA----HVEELRQINQDINTLENII 69 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH----HHHHHHHHHHHHHHHHHHH
Confidence 3567777777777788888888888888888888888888888533 221 2233344467777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 303 KDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 303 K~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
+.++..++..++.+..+.+++..+..
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666665555555554443
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.35 E-value=45 Score=31.23 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+=+..|..+.+.++.+....+++-..|++++..++..|.
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555554
No 80
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.02 E-value=34 Score=30.20 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 238 LKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIES 307 (338)
Q Consensus 238 Lq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEK 307 (338)
+..+..|+..++.+.+..+-.+..|.+.|.+. .....+.+|+++++.++.++..|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-------------el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNE-------------ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555566665666677766432 2334455666666666666666654
No 81
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=79.79 E-value=34 Score=34.52 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCchhhhhhcccccccCchHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL------QPTTNTYESVGRMFIKTPHPEVVV 289 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL------PeDTkVYKSVGRMFVltdKdeI~e 289 (338)
++.++++-+.|++.-..+++-++..+..+|...++++...+.+..+-..- -=+.+.||+-... -++....
T Consensus 245 vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vEl----crD~~q~ 320 (384)
T PF03148_consen 245 VNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVEL----CRDPPQY 320 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHH----HHhhHHH
Confidence 34466666666666666666666666666666666666666665554421 0134556654443 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKq 315 (338)
.|-+++..+..-+..|..+....+..
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 82
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.63 E-value=53 Score=30.54 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTL 259 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTl 259 (338)
+.+|+.++.+++.++..+......+++.-++-..++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL 49 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKAL 49 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444444333
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.80 E-value=39 Score=40.25 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=17.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 214 DTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENF 248 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~KlieTQQQLq~V~~Qiqql 248 (338)
+.-.+.|++.+.+++.....+..+++....|.+++
T Consensus 984 ~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~ 1018 (1486)
T PRK04863 984 SDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQY 1018 (1486)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666665555554444444444444444333
No 84
>KOG0250|consensus
Probab=78.62 E-value=36 Score=39.22 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
..+.+++.+.++.++++++.+...|...+++..
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433333
No 85
>KOG0976|consensus
Probab=78.59 E-value=26 Score=39.72 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCCCchhhhhhcccccccCchHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK--------RLQPTTNTYESVGRMFIKTPHPEVVVN 290 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe--------kLPeDTkVYKSVGRMFVltdKdeI~ee 290 (338)
+++.++.+||.+.....-+.+.+..-++.++.++|+++.-++++. .|..-+.---.+|.. +.++.+++.+
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~--L~nk~~~lt~ 180 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGED--LHDKNEELNE 180 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH--HhhhhhHHhH
Confidence 566677777777777777777777777777777777665444332 222223333345554 4688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
++.+..+.-+++..+.++.+|+-+++++.
T Consensus 181 ~~~q~~tkl~e~~~en~~le~k~~k~~e~ 209 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKALEEKLEKFKED 209 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887777654
No 86
>KOG4286|consensus
Probab=77.10 E-value=13 Score=41.48 Aligned_cols=67 Identities=12% Similarity=0.273 Sum_probs=59.3
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccccc
Q psy14557 213 SDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKT 282 (338)
Q Consensus 213 ~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVlt 282 (338)
+.+..+++++...+|-....+-++++.....+++.+++.+.++.+++++-+.+ ..+|++||+.||-.
T Consensus 197 ~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~---~~~w~pvgdl~ids 263 (966)
T KOG4286|consen 197 LRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVI---KGSWQPVGDLLIDS 263 (966)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh---hhccccHHHHHHhH
Confidence 34455799999999999999999999999999999999999999999998877 47899999999854
No 87
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.98 E-value=52 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.+.+.++-+++.|+.+...++++++++..++++
T Consensus 108 ~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 108 VKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555444443
No 88
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.94 E-value=53 Score=29.11 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHT 255 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~a 255 (338)
.+.+.++++..+++++......+..++..+...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 89
>PRK09039 hypothetical protein; Validated
Probab=76.57 E-value=74 Score=31.79 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.|+++...++..|..++.+....+.++++++..|+.++
T Consensus 148 aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 148 ALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555555555554
No 90
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=76.26 E-value=63 Score=29.66 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~L 305 (338)
|++.+-.+..++++. |+..++-+-|+..-...||+.+. .|+- .-+..+.++++..+-+++.|
T Consensus 42 eIErkKmeVrekVq~---~LgrveEetkrLa~ireeLE~l~--dP~R-------------kEv~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 42 EIERKKMEVREKVQA---QLGRVEEETKRLAEIREELEVLA--DPMR-------------KEVEMVRKKIDSVNRELKPL 103 (159)
T ss_pred HHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHhhc--cchH-------------HHHHHHHHHHHHHHHHhhHH
Confidence 566666666665554 77778888888888889999774 2343 34456677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14557 306 ESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 306 EKQkeyLEKqLeelQ~~LrE 325 (338)
-+.-..-++.+++.++...|
T Consensus 104 ~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 104 GQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666655544
No 91
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=76.12 E-value=29 Score=28.30 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
+|.++.+.+..+++.++ .++.+++.++..++..
T Consensus 71 ~l~~e~~~lk~~i~~le-------~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELE-------EQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHc
Confidence 34444444555555554 4445555555555443
No 92
>KOG1170|consensus
Probab=76.06 E-value=1.8 Score=48.23 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=48.8
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~ 58 (338)
..||+++|.||.+.|.-|--.--|. -.|+-.||..|||+--.|=+|||.|+.-|+
T Consensus 1005 awLe~~~LsEy~d~f~kndirGseL-l~L~rrDLkdlgvtkVGhvkril~aIkdl~ 1059 (1099)
T KOG1170|consen 1005 AWLESIGLSEYKDTFRKNDIRGSEL-LHLERRDLKDLGVTKVGHVKRILSAIKDLR 1059 (1099)
T ss_pred HHHhccccchhhhhhhccCccccee-eecCcccccccchhhhHHHHHHHHHHHHHH
Confidence 3689999999999999997766444 499999999999999999999999998884
No 93
>PF13514 AAA_27: AAA domain
Probab=75.81 E-value=56 Score=37.16 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=58.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCch------hhhhhcccccccCchHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR-LQPTTN------TYESVGRMFIKTPHPEVV 288 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek-LPeDTk------VYKSVGRMFVltdKdeI~ 288 (338)
.+.++...|..+.. +....+++.....+++.++.++..-.-....|-. +.++.. .+..+-. +=.-.
T Consensus 724 ~~~~~~~~l~~l~~-l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~------~l~~a 796 (1111)
T PF13514_consen 724 SPEEALEALELLEE-LREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRA------RLEEA 796 (1111)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHH------HHHHH
Confidence 55666666655554 6666667777777777777766666655555532 222111 1111111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
.+..++.+.+..+++.++.+...+++.++..+.++.+++.
T Consensus 797 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 836 (1111)
T PF13514_consen 797 REAQEERERLQEQLEELEEELEQAEEELEELEAELAELLE 836 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344555666667777777777777777777777665
No 94
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=75.56 E-value=81 Score=30.55 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKH 253 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR 253 (338)
++.+....++++.....++.+++.++.
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~ 168 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQ 168 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333
No 95
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.56 E-value=3.6 Score=33.85 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=46.4
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCccccccc----CCC-ChHHHHHHHHHHh
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYL----KIL-NPEHRAKILAAVQ 55 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~el----gI~-dp~hR~rlL~Av~ 55 (338)
..|.+-+|-+|-..|+..|=||++.+...+|++..|| |+. -|=|=+|+-.|.+
T Consensus 14 ~vLqrAnLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ 71 (82)
T PF04904_consen 14 RVLQRANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQ 71 (82)
T ss_pred HHHHHhhHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHH
Confidence 4678889999999999999999999999999998875 664 5889999988865
No 96
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.96 E-value=47 Score=39.56 Aligned_cols=51 Identities=6% Similarity=0.137 Sum_probs=39.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
..-...+.+..++++..+.++..++.+...++..++..+.+...+++..+.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445667777788888888888888888888888888888887777665554
No 97
>KOG1029|consensus
Probab=74.53 E-value=24 Score=39.81 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLT 258 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLT 258 (338)
+.+||+++.+.|+++..+...++.++.+++..+-+
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a 522 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSA 522 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 34667777777777777766666666666655544
No 98
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.53 E-value=40 Score=36.35 Aligned_cols=19 Identities=0% Similarity=0.109 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 302 IKDIESEKAIILVPALKIA 320 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ 320 (338)
+..+..+++.|+.++++++
T Consensus 347 ~~~a~~~~~~L~~~l~~~~ 365 (754)
T TIGR01005 347 ADAAQARESQLVSDVNQLK 365 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 99
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.52 E-value=71 Score=33.76 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=31.8
Q ss_pred chhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 269 TNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 269 TkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
...|..|=..+- ...+-++++++....+...+..|.+.+....+++++.+..|+++-
T Consensus 375 ~~~ysel~e~le--el~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 375 EIAYSELQEELE--EILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred CCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555544321 223334455556666666666666666666666666666666544
No 100
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.06 E-value=53 Score=35.37 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHH---HHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEV---VVNLEKKV 295 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI---~eeLeEki 295 (338)
+.+|...+|+.....+.++...+..++..++.+++..+-...+|..--. .+-.....+ ..-++.+ ..++.+++
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k--el~~~~e~l--~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK--ELTESSEEL--KEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666767777777777777776666666655322 111222211 1222222 23344555
Q ss_pred HHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEK 309 (338)
Q Consensus 296 eslEerIK~LEKQk 309 (338)
..++++|+.+..+.
T Consensus 223 ~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 223 RELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665554
No 101
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.26 E-value=84 Score=30.88 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
.|..-+..|+.....+...+..+...+..+.............|..+
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544444444444444444444444444
No 102
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.23 E-value=69 Score=28.65 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEK 301 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEer 301 (338)
+.|-.+-.++..++..-..+...+..++|++..++--...+.. ++...+.+=. ...+-+..+......++.+
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~---daEn~k~eie-----~L~~el~~lt~el~~L~~E 74 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL---DAENSKAEIE-----TLEEELEELTSELNQLELE 74 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4455666677778888888888888888887766644443332 3333333211 1234445555666667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 302 IKDIESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
+..+.+.++.|.+.+++.++.+.++=..+..
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888888888888888888887776554443
No 103
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.07 E-value=30 Score=40.02 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
-.++++.+..++.++..+...+..+..+...++.+++..+-...++...- .++=..+ =.+..-..-+++|.+.++
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~k--lkl~~~l---~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK--LQIGTNL---QRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 36788888888888888877777777777777777777755555544331 1111111 134445555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.+..+|+.++.+..-+...+..++..+.++.
T Consensus 899 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666665555554443
No 104
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=73.00 E-value=25 Score=34.10 Aligned_cols=83 Identities=13% Similarity=0.232 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~L 305 (338)
..+.++..++++.+.+...++.++..+...+--++-+..-..+...|. +.+ ..-.......++.++.=+++|..|
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~--~~~---~~~~~~~~~~de~I~rEeeEIreL 251 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD--EES---EESSEDSVDTDEDIRREEEEIREL 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--ccc---ccccccchhHHHHHHHHHHHHHHH
Confidence 344555556666666666666666665555554444444333322232 223 222333334455555566777777
Q ss_pred HHHHHHHH
Q psy14557 306 ESEKAIIL 313 (338)
Q Consensus 306 EKQkeyLE 313 (338)
|.++..||
T Consensus 252 E~k~~~Lq 259 (259)
T PF08657_consen 252 ERKKRELQ 259 (259)
T ss_pred HHHHHhcC
Confidence 77776553
No 105
>KOG0804|consensus
Probab=72.94 E-value=36 Score=36.02 Aligned_cols=23 Identities=9% Similarity=-0.126 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 305 IESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 305 LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+++.....++++.++|++||.+|
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Confidence 33333344555555555555554
No 106
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=72.90 E-value=82 Score=30.85 Aligned_cols=91 Identities=7% Similarity=0.068 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKK 294 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEk 294 (338)
+.+++++..+.+++.++.+.+.++....++.+..+++.++.+- | |+. |- .++.++ ++.+.+
T Consensus 92 ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~----L---------~~~-g~----is~~~~-~~~~~~ 152 (370)
T PRK11578 92 IDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQR----L---------AKT-QA----VSQQDL-DTAATE 152 (370)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------HHc-CC----CCHHHH-HHHHHH
Confidence 3567888888888777777777776666666655555444321 1 111 10 122222 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
.+..+.++..++.+.+.++.+++.++..+.
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 182 (370)
T PRK11578 153 LAVKQAQIGTIDAQIKRNQASLDTAKTNLD 182 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666666665543
No 107
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.55 E-value=16 Score=28.37 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
=+.+++.+.+..+.++..||+.....+++++++.+.|.++
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667777777777666666666666654
No 108
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.23 E-value=96 Score=30.91 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAI---ILVPALKIARYLV 324 (338)
Q Consensus 295 ieslEerIK~LEKQkey---LEKqLeelQ~~Lr 324 (338)
.+.+.++++.++.++.+ |..++..++++|+
T Consensus 132 ~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 132 QREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555 5555666666655
No 109
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=72.03 E-value=87 Score=29.32 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
+++..+.+...++.++.+++..+...+...+.-...++-...+|
T Consensus 103 ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eL 146 (237)
T PF00261_consen 103 EAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKEL 146 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Confidence 34445555555666666666655555544444433333333333
No 110
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.95 E-value=98 Score=32.56 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPT 268 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeD 268 (338)
.++++.+.++..++...+++++....+....++++..++.-.+||+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 157 NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 468888888888888899999999999999999999999999999999655
No 111
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=71.60 E-value=39 Score=34.24 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=54.5
Q ss_pred EeecCcccccccCCCceeeccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhh
Q psy14557 193 IVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTY 272 (338)
Q Consensus 193 ~~s~~~~~~~~~~~~~s~~~~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVY 272 (338)
.|.||-. =.+|.+++ .+.|...+-++.+.+.++.....++..+++|+.+.+..+..++-. +|.....+..-|
T Consensus 68 ~V~dnq~--Vk~Gd~L~----~iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~--~l~~a~~~~~R~ 139 (352)
T COG1566 68 NVKDNQL--VKKGDVLF----RIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQ--DLDQAQNELERR 139 (352)
T ss_pred EecCCCE--ecCCCeEE----EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3444432 24565543 456778999999999999999999999998888887666655554 344444567778
Q ss_pred hhhccc
Q psy14557 273 ESVGRM 278 (338)
Q Consensus 273 KSVGRM 278 (338)
..+++.
T Consensus 140 ~~L~~~ 145 (352)
T COG1566 140 AELAQR 145 (352)
T ss_pred HHHHhc
Confidence 777743
No 112
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.55 E-value=15 Score=27.82 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCCchhhh
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENF-KKNKHHTQLTLTEIKRLQPTTNTYE 273 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~Qiqql-ErelR~aeLTlkELekLPeDTkVYK 273 (338)
.+++.+.+++.++.+++++...+..+++.+ ...-..-+.+.+++.=..|+-.+|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~ 76 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFK 76 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEe
Confidence 455555666666666666666666666666 3333333444445555555666654
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=71.33 E-value=29 Score=31.56 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.++.+.+...-++.+..++.+|.-+-..+++++..++.+=+++|
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555544444
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.09 E-value=86 Score=31.18 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
++++...++.+|+....++..++.++.+++.
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444333333
No 115
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.97 E-value=91 Score=29.44 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 214 DTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
..+++.+++++.|.+.-+.+++.. .+..|.+..+.+++.|+..+..+.+.
T Consensus 119 ~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 119 QLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778999999999988888877 38889999999999999887777764
No 116
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.83 E-value=1e+02 Score=34.04 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
|..+.+.||.....|+..++..++.++.+-.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555443
No 117
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.49 E-value=27 Score=28.47 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 234 TKQKLKIQDIQVENFKKNKHHT------QLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIES 307 (338)
Q Consensus 234 TQQQLq~V~~QiqqlErelR~a------eLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEK 307 (338)
.+..+..+..++..++..+|.. .++.+||..|. ..+-.+++++--+ |.+.+...|..|++
T Consensus 17 ~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE--~~Le~aL~~VR~r------------K~~~l~~~i~~l~~ 82 (100)
T PF01486_consen 17 LQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLE--QQLESALKRVRSR------------KDQLLMEQIEELKK 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHH--HhhhhhHHHHHHH------------HHHHHHHHHHHHHH
Confidence 4444445555555555555544 48888888884 5677777776322 23344445555555
Q ss_pred HHHHHHHHHHHHHHH
Q psy14557 308 EKAIILVPALKIARY 322 (338)
Q Consensus 308 QkeyLEKqLeelQ~~ 322 (338)
+..-++..-..+..+
T Consensus 83 ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 83 KERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHH
Confidence 544444444444433
No 118
>PLN02678 seryl-tRNA synthetase
Probab=70.26 E-value=39 Score=35.25 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
+|.++.+.+.++|+.| +.++++++++|.+++..+.
T Consensus 75 ~l~~~~~~Lk~ei~~l-------e~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 75 ELIAETKELKKEITEK-------EAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCC
Confidence 3444444555555544 4555555555555555443
No 119
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.16 E-value=48 Score=33.97 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 301 KIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 301 rIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+.+.|.++.+.++++++++++++.+++..+
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 74 EVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444555555555555666555444
No 120
>PRK11519 tyrosine kinase; Provisional
Probab=69.81 E-value=1.2e+02 Score=33.08 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 234 TKQKLKIQDIQVENFKKNKHHTQLTLTE 261 (338)
Q Consensus 234 TQQQLq~V~~QiqqlErelR~aeLTlkE 261 (338)
+++.+.-++.|+..++.++..++..+++
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 121
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=69.50 E-value=1.2e+02 Score=31.68 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQL 257 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeL 257 (338)
|.+.++|.++....+.+.....+.++++.+++..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~ 73 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLET 73 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555443
No 122
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.08 E-value=56 Score=33.88 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
.++..+...++.+++.++++...|++++..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444445555555555555555555555443
No 123
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=68.40 E-value=41 Score=34.34 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 215 TVV-TCGDKAFAELQIKMMDTKQKLKIQDIQ 244 (338)
Q Consensus 215 ~~d-eELqKaf~ELQ~KlieTQQQLq~V~~Q 244 (338)
..+ +++++.+.+|..++.+.+.++..++..
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 888888888877666666555554444
No 124
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.75 E-value=1.2e+02 Score=31.91 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
..++.+.++..++...+++.+.+..++..++.++..++-.+.+... =.++++.+++.+
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~----------------------~l~~~~~~I~~~ 99 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD----------------------DLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------HHHHHHhhHHHH
Confidence 3555566666666666666666666666555555554433333221 133455555556
Q ss_pred HHHHHHHHHHH
Q psy14557 299 EEKIKDIESEK 309 (338)
Q Consensus 299 EerIK~LEKQk 309 (338)
+.+++.|+.|+
T Consensus 100 ~~~l~~l~~q~ 110 (420)
T COG4942 100 NARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.74 E-value=1.2e+02 Score=30.13 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
.|...+..|+.-...+.++++.++.=+..+.........-...|..++++...| -++..+.++++++..
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~-----------d~~eL~~lk~~l~~~ 216 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC-----------DPTELDRAKEKLKKL 216 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC-----------CHHHHHHHHHHHHHH
Confidence 444445555554444444444444433334333344444444444443321111 133444444555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
..+|....++..-++.+++++...|.
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 126
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=67.19 E-value=1.4e+02 Score=30.25 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcc---CCCchhhhhhcccccc--cCchHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ----LTLTEIKRL---QPTTNTYESVGRMFIK--TPHPEVV 288 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ae----LTlkELekL---PeDTkVYKSVGRMFVl--tdKdeI~ 288 (338)
.|.+.+..+|+.++..+.+++..+...+..++..++... ++..-|+.= |.---+.-.++..++. ....+.+
T Consensus 254 ~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i 333 (384)
T PF03148_consen 254 HETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESI 333 (384)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHH
Confidence 477788888888888888888888888887777766543 333334332 3222222233333322 1223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLee 318 (338)
..|.++...++..+..|.+.+..|++.+.-
T Consensus 334 ~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 334 EALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 127
>KOG2273|consensus
Probab=67.14 E-value=66 Score=33.10 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHH-HHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVV-NLEKKVKSYE 299 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~e-eLeEkieslE 299 (338)
.+.|.+++.++....+++..+..+++.+-...+.......| +|+||..=...+... +|......+.
T Consensus 273 ~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~-------------~g~~~~~l~~~~~~~~~l~~~~~~~~ 339 (503)
T KOG2273|consen 273 DKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAE-------------LGKALAQLSALEGETDELSEALSGLA 339 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 35566777777777777777777776654444444444444 555544433333333 4444444444
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Q psy14557 300 EKIKDIESEKAI--ILVPALKIARYLVILIRL 329 (338)
Q Consensus 300 erIK~LEKQkey--LEKqLeelQ~~LrElLr~ 329 (338)
.-+..+.+-.+. .++........+++.++.
T Consensus 340 ~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~~ 371 (503)
T KOG2273|consen 340 KVIESLSKLLEKLTAEKDSKKLAEQLREYIRY 371 (503)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHH
Confidence 444333333322 244444445555555443
No 128
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=67.04 E-value=59 Score=25.38 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
....+..|...+..+...+..++++.+.....+.+.....+
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666655555444
No 129
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.99 E-value=61 Score=33.17 Aligned_cols=30 Identities=10% Similarity=0.250 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLee 318 (338)
++|.++.+.+.++|+.|+++.+.++.++.+
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655555555444444
No 130
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=66.83 E-value=53 Score=37.85 Aligned_cols=33 Identities=3% Similarity=0.039 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENF 248 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~Qiqql 248 (338)
.+++|+..+.++..++...+...+.+..++.+.
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~ 633 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQI 633 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666655555555555444444444433
No 131
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.81 E-value=96 Score=27.76 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
+.+.+.+.+.-..+.....++..+..++..++.++..+.-+++.|.+
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777778888999999999999999999999999887
No 132
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.58 E-value=69 Score=31.67 Aligned_cols=42 Identities=10% Similarity=0.195 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+.-+.++.+++..+..++..|+-+...|.+++.-+..+++..
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666666666666666666666555555443
No 133
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=66.52 E-value=22 Score=31.71 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
..++..++..++.++.+++.|...++.++++.+.+...|...|...
T Consensus 46 ~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 46 AKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888888888888888888888888888888888877654
No 134
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.36 E-value=84 Score=30.83 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccccc---CchHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKT---PHPEVVVNLEKKVKS 297 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVlt---dKdeI~eeLeEkies 297 (338)
++.+.|+......++..-..+..-|+..+..- +..+.+=|.. -.+|.++=.++=.. .......+|.+-.+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st--~~~Vr~lLqq----y~~~~~~i~~le~~~~~~l~~ak~eLqe~eek 78 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDST--ALKVRKLLQQ----YDIYRTAIDILEYSNHKQLQQAKAELQEWEEK 78 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhH--HHHHHHHHHH----HHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 45666666665555555555555555544332 2222222332 24566665554333 366888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+.++..|+.+.++|+.++.+++++|.-+..=.|
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD 112 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD 112 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999986654333
No 135
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=65.84 E-value=36 Score=34.11 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
+--+.|..|+.++.+..+.|..++.+...+..+++..+-++..++.-
T Consensus 319 ~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 319 ERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888899999999999999999998888888888887763
No 136
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=65.77 E-value=9.3 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.290 Sum_probs=32.0
Q ss_pred hHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHh
Q psy14557 13 HMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55 (338)
Q Consensus 13 y~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~ 55 (338)
-...|..+||.+++++.+....+|.++-=.+++.=.+|..+++
T Consensus 5 ~~~~L~~~G~~s~e~la~~~~~eL~~i~g~~~e~a~~ii~~a~ 47 (50)
T TIGR01954 5 IAQLLVEEGFTTVEDLAYVPIDELLSIEGFDEETAKELINRAR 47 (50)
T ss_pred HHHHHHHcCCCCHHHHHccCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998873234555555555554
No 137
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.74 E-value=1.3e+02 Score=31.78 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
.++++++.+.+..+++.+++++..+.+.+..+....
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E 413 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE 413 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666555544443
No 138
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=65.68 E-value=74 Score=32.24 Aligned_cols=50 Identities=24% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCC
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVE----NFKKNKHHTQLTLTEIKRLQP 267 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~Qiq----qlErelR~aeLTlkELekLPe 267 (338)
++|++.|.+||..-..-.+++..+..-.. .+.+++++..--.+.|.++.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46777788887776666666655544332 455555556555666666643
No 139
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.60 E-value=1.2e+02 Score=32.46 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhh
Q psy14557 45 EHRAKILAAVQV 56 (338)
Q Consensus 45 ~hR~rlL~Av~~ 56 (338)
.=+.-||.|+..
T Consensus 39 ~GKttll~ai~~ 50 (650)
T TIGR03185 39 AGKTTLLDAIQL 50 (650)
T ss_pred CCHHHHHHHHHH
Confidence 334445555444
No 140
>PRK14011 prefoldin subunit alpha; Provisional
Probab=65.48 E-value=37 Score=30.30 Aligned_cols=94 Identities=7% Similarity=0.155 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccccc-----------CchH----------HHHHHH
Q psy14557 234 TKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKT-----------PHPE----------VVVNLE 292 (338)
Q Consensus 234 TQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVlt-----------dKde----------I~eeLe 292 (338)
..-.|+.+.+|++.+...+.....+..++..--+.-.....=..++|-= +.+. |...++
T Consensus 8 ~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~ 87 (144)
T PRK14011 8 QFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVS 87 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHH
Confidence 5555667777777777777777777666544321111111112244421 1222 224566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+-++.++.+++.|++..+.|.+.+++..+.++++-
T Consensus 88 eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 88 EVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777777776666666666666554
No 141
>KOG1899|consensus
Probab=65.25 E-value=71 Score=35.44 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCchhhhhhc-ccccccCchHHHHHH
Q psy14557 214 DTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK-RLQPTTNTYESVG-RMFIKTPHPEVVVNL 291 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe-kLPeDTkVYKSVG-RMFVltdKdeI~eeL 291 (338)
....|++|.-+..|+.--..++=|++++.-|.+.-.-.||..+.-++|=. +|- .+=+.+- .+.-.+..+.-+=+|
T Consensus 103 ~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLn---atEEmLQqellsrtsLETqKlDL 179 (861)
T KOG1899|consen 103 CPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLN---ATEEMLQQELLSRTSLETQKLDL 179 (861)
T ss_pred CCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhc---hHHHHHHHHHHhhhhHHHHHhHH
Confidence 34668999999999988888888888888888877777777665554432 121 1111111 123335666677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
-..+..++.+...|||.+...|+++...|..++++-+.
T Consensus 180 maevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~ 217 (861)
T KOG1899|consen 180 MAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQS 217 (861)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Confidence 88899999999999999999999999888888876544
No 142
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=65.20 E-value=1.2e+02 Score=32.87 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQ 244 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~Q 244 (338)
.+++.+.+|+..+...++....+..+
T Consensus 168 ~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 168 QLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444444333
No 143
>KOG0933|consensus
Probab=64.79 E-value=82 Score=36.57 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCchhhhhhccc--ccccCchHHHHHHH--
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ--PTTNTYESVGRM--FIKTPHPEVVVNLE-- 292 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP--eDTkVYKSVGRM--FVltdKdeI~eeLe-- 292 (338)
++++.|+..|..+..+..+|+.+..|.+....-.+..++...+|.-+- -+..-|.-++.- =++.+..+...+++
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~ 760 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEK 760 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666655555566666666665431 123334444432 12233333333333
Q ss_pred -HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccC
Q psy14557 293 -KKVKSYEEKIKDIESEKAI----ILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 293 -EkieslEerIK~LEKQkey----LEKqLeelQ~~LrElLr~~~ 331 (338)
...+.+++.|++||+..+- =++++++++.+|+.+.+..+
T Consensus 761 ~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 761 ERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 3345666777777776543 45677777777776665444
No 144
>KOG3678|consensus
Probab=64.71 E-value=5.5 Score=42.69 Aligned_cols=51 Identities=22% Similarity=0.081 Sum_probs=39.2
Q ss_pred hhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 10 KKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 10 L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
|..|+=-++-||-+.-=.-..-++.-+++-||++|-||.||++|.+...-.
T Consensus 551 ls~YTY~mlt~GvnRSLLssltde~m~naCGI~~~iHR~kl~qA~eta~H~ 601 (832)
T KOG3678|consen 551 LSVYTYQMLTNGVNRSLLSSLTDEMMQNACGITNPIHRLKLTQAFETAKHP 601 (832)
T ss_pred HHHHhHHHhhccccHHHHHHhhHHHHHHhcCccchHHHHHHHHHHHhhcCC
Confidence 567888899999875433334445567889999999999999999986543
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.60 E-value=92 Score=33.65 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQK-------LKIQDIQVENFKKNK 252 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQ-------Lq~V~~QiqqlErel 252 (338)
++..+.+++.++.+...+ +..++.|++.++.++
T Consensus 293 L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 293 LRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 344455555554444442 445555665555554
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.10 E-value=18 Score=35.68 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
-++.|+++.+.+..+++.|+++.+.+.+++.+++.++.++
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666555543
No 147
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.39 E-value=53 Score=30.86 Aligned_cols=63 Identities=10% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcc--cccccCchHHHHHHHHHH
Q psy14557 228 QIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGR--MFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 228 Q~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGR--MFVltdKdeI~eeLeEki 295 (338)
+......+.++.....++..+++++..++-|..+|..+ +|+.+.. -||..|.+-..++=.+++
T Consensus 69 ~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~-----m~~m~~~L~~~v~~d~Pf~~~eR~~Rl 133 (251)
T PF11932_consen 69 EVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL-----MEQMIDELEQFVELDLPFLLEERQERL 133 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 33333334444444444445555555555555555433 4444444 356666555554333333
No 148
>PF15294 Leu_zip: Leucine zipper
Probab=63.14 E-value=1.7e+02 Score=29.19 Aligned_cols=52 Identities=21% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ 266 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP 266 (338)
+..+-+.+.+..||..-..++.+++.+..+....-++...++-.+++|..+.
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~ 176 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQ 176 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999853
No 149
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.89 E-value=77 Score=25.26 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKN 251 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlEre 251 (338)
.|.+|+.|+..+-..+..+...++.++..
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665555555555555555444443
No 150
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=62.84 E-value=65 Score=34.41 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+.+++..+.++..+.+.+++..+.++.+.|+.+++++++++.++
T Consensus 83 ~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777888888888888888888888777777654
No 151
>PF13514 AAA_27: AAA domain
Probab=62.78 E-value=91 Score=35.56 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
-...+..+...+..++..++.+...++.++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 272 (1111)
T PF13514_consen 243 RLEQLEEELAEAQAQLERLQEELAQLEEEL 272 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 152
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=62.78 E-value=2.1 Score=36.16 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCC---chhhhhhccccccc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR-----LQPT---TNTYESVGRMFIKT 282 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek-----LPeD---TkVYKSVGRMFVlt 282 (338)
.+.|++.+|+..+..++.++..+..+.+.++.+... .++... .|.. .++||++| +-+..
T Consensus 10 ~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~----~~~~~~~~~~~~d~~vlklkLYrsLG-I~~e~ 76 (118)
T PF08286_consen 10 RLAKELSDLESELESLQSELEELKEELEELEEQEVE----GEEVDEDTTEEIDSNVLKLKLYRSLG-IELEY 76 (118)
T ss_dssp ---------------------------------HT----------CCCCCHHCCCHHHHHHHHHCC-EEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcccccccCcccchHHHHHHHHHhCc-EEEEe
Confidence 445556666666666666666666666655555544 111111 1111 37899999 54433
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=62.45 E-value=1.5e+02 Score=28.37 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
++...|.++|.++..+++.|.....-+..|+-.++.++-...+|..-
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777766666666666666666666666555543
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=62.21 E-value=1.3e+02 Score=27.83 Aligned_cols=108 Identities=12% Similarity=0.074 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccc--cccCchHHHHHHHH---
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMF--IKTPHPEVVVNLEK--- 293 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMF--VltdKdeI~eeLeE--- 293 (338)
.+..-+..++....++++++.....-+.++...+.+..-+.++|..|--+.. ...--| |...++++....+.
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e---vL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHE---VLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666667777777777777777777777777777777743222 222211 22335555444333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 294 -KVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 294 -kieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
-...+..+.--|+++...|...++..+.+|.+++.+
T Consensus 136 evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 136 EVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677888888888888888888888764
No 155
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=62.11 E-value=1.7e+02 Score=29.10 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhc-cCCCchhhhh
Q psy14557 247 NFKKNKHHTQLTLTEIKR-LQPTTNTYES 274 (338)
Q Consensus 247 qlErelR~aeLTlkELek-LPeDTkVYKS 274 (338)
.+..++...+.-+.+|.. +.++.+..+.
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~ 286 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKR 286 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 344444444444444432 3555555554
No 156
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=61.66 E-value=16 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKq 315 (338)
-+.++.+++.++.+|+.|+++++.|-.+
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788888888888888888777543
No 157
>KOG0161|consensus
Probab=61.39 E-value=1.1e+02 Score=37.56 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHH
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL-QPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIK 303 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL-PeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK 303 (338)
.+++..+.++..++.....+...++++++.++-...+|.+. .+....+.-+- .=+...+.=++.|++++..+++.+.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~--~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLE--LEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666666666666666666655333333221 11111111111 1112233445666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 304 DIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 304 ~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+|.+.++.++..+.+++..|..
T Consensus 982 kL~kekk~lEe~~~~l~~~l~~ 1003 (1930)
T KOG0161|consen 982 KLSKEKKELEERIRELQDDLQA 1003 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766666653
No 158
>KOG0971|consensus
Probab=61.35 E-value=1.2e+02 Score=35.20 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=57.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQK------------------------LKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNT 271 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQ------------------------Lq~V~~QiqqlErelR~aeLTlkELekLPeDTkV 271 (338)
...+|+.++.+|..|+..++.+ -..++.|+..++++++++....+|+....+.
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~--- 301 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKER--- 301 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3456777777777666555443 2345667778899999999888888766422
Q ss_pred hhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 272 YESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 272 YKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
|+ --..|-.+-++=+.=+++.+|+|-++|+...+.+.+++++++-.|
T Consensus 302 ~k-----~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 302 YK-----EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112233333333333444555555555555555555555554444
No 159
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=61.24 E-value=1.2e+02 Score=34.77 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIK 303 (338)
Q Consensus 285 deI~eeLeEkieslEerIK 303 (338)
++....++++...+...+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~ 393 (1163)
T COG1196 375 EELFEALREELAELEAELA 393 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 160
>PF15456 Uds1: Up-regulated During Septation
Probab=61.09 E-value=1.1e+02 Score=26.62 Aligned_cols=88 Identities=10% Similarity=0.136 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies 297 (338)
++|+|.+.-|..++..++ ..+. +++.+|.+...+.-+..-+... .-| ..+-..+-++....
T Consensus 25 e~LKkEl~~L~~R~~~lr-------~kl~-le~k~RdAa~sl~~l~~~~~~~-------~~~----~~~~~~~~eeel~~ 85 (124)
T PF15456_consen 25 EELKKELRSLDSRLEYLR-------RKLA-LESKIRDAAHSLSRLYSSSSRR-------ARF----SRESSLKAEEELAE 85 (124)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHhcCCCccc-------cCC----CcchHHHHHHHHHH
Confidence 355555554444444444 3444 5667777766666555433221 122 22333344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
++.+++.+..+...++.++.+.+..|=
T Consensus 86 ~~rk~ee~~~eL~~le~R~~~~~~rLL 112 (124)
T PF15456_consen 86 SDRKCEELAQELWKLENRLAEVRQRLL 112 (124)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666655443
No 161
>PLN02939 transferase, transferring glycosyl groups
Probab=60.65 E-value=42 Score=38.44 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=38.5
Q ss_pred ccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 277 RMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 277 RMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.|.++.|...++.+|.+- +..++++-.|+|.+.-|+..+.+++..+-.
T Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (977)
T PLN02939 235 NMLLKDDIQFLKAELIEV-AETEERVFKLEKERSLLDASLRELESKFIV 282 (977)
T ss_pred hHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888887664 456889999999999999999998887743
No 162
>KOG4403|consensus
Probab=60.33 E-value=91 Score=33.24 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH------
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV------ 295 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki------ 295 (338)
+.|++||..+...+..-..|...+..+++.+++|. +++|| -+++.+-.+- + ..+.+...|++-.
T Consensus 259 qsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~-rl~el---reg~e~e~~r-k-----elE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 259 QSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAP-RLSEL---REGVENETSR-K-----ELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhh-hhhhh---hcchhHHHHH-H-----HHHHHHHHHHHHHHHHHhc
Confidence 34666777777777777777777778888777543 23333 2333332222 1 1122222232222
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 --------------KSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 296 --------------eslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
-++|.+++-+++|++.-+|+++.+.+...+
T Consensus 329 S~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~ek 372 (575)
T KOG4403|consen 329 SSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEK 372 (575)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 245556666777777777777655544433
No 163
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.29 E-value=1.4e+02 Score=27.66 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQD 242 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~ 242 (338)
|.+++..+.+++.....+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~ 40 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELR 40 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 164
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.12 E-value=1.2e+02 Score=35.26 Aligned_cols=108 Identities=8% Similarity=0.139 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHHHHHhcc-CCCchhhhhhcccccccC
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVEN----F-------KKNKHHTQLTLTEIKRL-QPTTNTYESVGRMFIKTP 283 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~Qiqq----l-------ErelR~aeLTlkELekL-PeDTkVYKSVGRMFVltd 283 (338)
+.++|.+.+.+.+.++.+.+.+++....+... + ....++.+-....|... +++++ -..-.++....-
T Consensus 103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~-l~~a~~~~lqae 181 (1109)
T PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTP-LAQAQLTALQAE 181 (1109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCc-ccHHHHHHHHHH
Confidence 44788888888888888888888877666622 1 22223333333345553 33333 222222322221
Q ss_pred chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPE---VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 284 Kde---I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
... -.+.++........+++-+..|.+++.++++.++.+++
T Consensus 182 ~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~ 225 (1109)
T PRK10929 182 SAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQ 225 (1109)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12333334444455555555555555555554444443
No 165
>KOG0018|consensus
Probab=59.75 E-value=95 Score=36.13 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCCchhhhhhc-----c-----------cccc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQL-TLTEIKRLQPTTNTYESVG-----R-----------MFIK 281 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeL-TlkELekLPeDTkVYKSVG-----R-----------MFVl 281 (338)
..++.+..+...+...+.++..+..-.+..+.+++...- ..++|.=.++...-|...= . |+..
T Consensus 314 ~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~ 393 (1141)
T KOG0018|consen 314 TAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSD 393 (1141)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666554433 5556665555555554321 1 1111
Q ss_pred cC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TP----HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 282 td----KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
++ --....+|+++++.++..+..+.+++..|...+.+.++.+.++
T Consensus 394 ~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~ 442 (1141)
T KOG0018|consen 394 QDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEEL 442 (1141)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0122444555555555555555555555555555555444443
No 166
>KOG0996|consensus
Probab=59.64 E-value=1.3e+02 Score=35.39 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQL 257 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeL 257 (338)
..+.+++..++.++.+.+.++-.+..+...+.+.++..+.
T Consensus 781 ~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~ 820 (1293)
T KOG0996|consen 781 EKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELEN 820 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3556666666666666666655444454444444444443
No 167
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.62 E-value=83 Score=28.96 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHT 255 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~a 255 (338)
.++.++..+++++..+...+..++..+..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555544443
No 168
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=59.50 E-value=41 Score=31.63 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
+-+++.++...+.+|+.++.++.+|+.+..
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777888888888888888877653
No 169
>KOG3478|consensus
Probab=59.15 E-value=1.3e+02 Score=26.58 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFK--KNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKD 304 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlE--relR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~ 304 (338)
+|.+|.+.-.+++.+.-.+...- |++-+++|+...+- -++-..-.+=.++|=+.---=|+.+|++-......|++=
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V--~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlef 80 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIV--LEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEF 80 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHH
Confidence 56677766666666655444333 33334444443332 123333444445565555556778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14557 305 IESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 305 LEKQkeyLEKqLeelQ~~LrE 325 (338)
+.+..++++.++...++++.+
T Consensus 81 I~~Eikr~e~~i~d~q~e~~k 101 (120)
T KOG3478|consen 81 ISKEIKRLENQIRDSQEEFEK 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887753
No 170
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=58.51 E-value=51 Score=24.75 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
+...+++|+.++..++.+...|......|...+..+..+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666666666666666666555543
No 171
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.44 E-value=2.3e+02 Score=30.89 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
+..|...+++.+.-++.|+..++.++..++..+.+.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555554444443
No 172
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=58.01 E-value=64 Score=27.04 Aligned_cols=42 Identities=5% Similarity=0.178 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCASL 336 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a~~ 336 (338)
.......-+....+++..++.+.++.++.|+.+++... ||.-
T Consensus 54 ~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~-Ca~~ 95 (110)
T PF10828_consen 54 QLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDP-CANT 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-cccC
Confidence 33344455666777778888999999999999998876 8753
No 173
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.92 E-value=1.7e+02 Score=27.75 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=9.5
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMD 233 (338)
Q Consensus 215 ~~deELqKaf~ELQ~Klie 233 (338)
...++|.+++.++..++..
T Consensus 162 ~~~~dL~~~L~eiR~~ye~ 180 (312)
T PF00038_consen 162 FRSSDLSAALREIRAQYEE 180 (312)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHH
Confidence 3445677777777666543
No 174
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=57.81 E-value=63 Score=29.97 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=17.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDI 243 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~ 243 (338)
.+++++..+.+++.++..++.++.....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (322)
T TIGR01730 58 DDDDYQLALQAALAQLAAAEAQLELAQR 85 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578887777777766666655544333
No 175
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=57.70 E-value=52 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 251 NKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 251 elR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
++|++.--.+||..+.+ .|+.+.++|+...+.+|.+|..|+++-+-|-+.-+.++-+-|
T Consensus 6 dk~ri~~li~~la~~~~---------------~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyr 64 (328)
T PF15369_consen 6 DKRRIANLIKELARVSE---------------EKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYR 64 (328)
T ss_pred HHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556666788887754 688999999999999999999999998887777776665554
No 176
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.56 E-value=2.6e+02 Score=29.74 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
..++...+++..+..++++..|+..++.|..+++++...|
T Consensus 83 ~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 83 LREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888999999999999999999988877654
No 177
>KOG1916|consensus
Probab=57.37 E-value=1.1e+02 Score=35.43 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 229 IKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR-LQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIES 307 (338)
Q Consensus 229 ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek-LPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEK 307 (338)
.+..+.++|+-..-.|-...+-.-+.-.--.+||.+ +++ .|-++|--| +.+-..+++.+|-......++-|..|.|
T Consensus 946 ~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~El~~tv~P--~v~rs~~p~-~~q~~~s~itkl~~~eg~~kenI~ql~K 1022 (1283)
T KOG1916|consen 946 KALRDLQQQITQQLTQFLSKELNAMFEKTIKKELAKTVGP--CVARSVEPV-IEQTVSSAITKLFQREGIGKENINQLLK 1022 (1283)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhhhhhHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 333444444444444444444444444445678888 654 455555444 4455778899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14557 308 EKAIILVPALKI 319 (338)
Q Consensus 308 QkeyLEKqLeel 319 (338)
.++.+..-.+..
T Consensus 1023 Sknl~dtvar~i 1034 (1283)
T KOG1916|consen 1023 SKNLEDTVARQI 1034 (1283)
T ss_pred hccHHHHHHHHH
Confidence 998554443333
No 178
>KOG0977|consensus
Probab=57.15 E-value=1.5e+02 Score=32.06 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
.+++.+.+........+..+..+..++..+.... ..+.+++...+++...|.. .+...+.-..-++-+++.+
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~---~~~~k~~~~~re~~~~~~~-----~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKL---EKAEKERRGAREKLDDYLS-----RLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHhhhHHHHHHHhh-----hhhhhhhHHHHHHHHHHHH
Confidence 5566677777777777777777776666665443 3444566666666666643 2334444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
+++++.|.++-..|..++..+..+
T Consensus 168 e~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 168 EDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555555555555555555544443
No 179
>PRK01156 chromosome segregation protein; Provisional
Probab=57.03 E-value=2.4e+02 Score=31.14 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=11.9
Q ss_pred cccCCCChHHHHHHHHHHhh
Q psy14557 37 NYLKILNPEHRAKILAAVQV 56 (338)
Q Consensus 37 ~elgI~dp~hR~rlL~Av~~ 56 (338)
.-|-=.|-.=+.=||.|+..
T Consensus 26 ~~I~G~NGsGKSsileAI~~ 45 (895)
T PRK01156 26 NIITGKNGAGKSSIVDAIRF 45 (895)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 33333455666777777775
No 180
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=57.03 E-value=43 Score=34.72 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
.+++.+.+.+..++..|+.+.+.|+.-++.+......--.
T Consensus 196 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ 235 (475)
T PF10359_consen 196 PELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQ 235 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 4566788888888888998888888888887775544333
No 181
>PLN02678 seryl-tRNA synthetase
Probab=57.00 E-value=1.4e+02 Score=31.33 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyL 312 (338)
..+|+++++.++.+++.++.+...+
T Consensus 80 ~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 80 TKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999988888777654
No 182
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=56.81 E-value=1.7e+02 Score=31.90 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
.++..-.-+|+++.++..++..+...+....+.+...+-.+.+|
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444566666666666555555444444444444444444
No 183
>PRK11281 hypothetical protein; Provisional
Probab=56.77 E-value=1.2e+02 Score=35.28 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKK 250 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlEr 250 (338)
.+-.++.+.+.++++++.+.|.++.....|+...+.
T Consensus 121 ~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT 156 (1113)
T PRK11281 121 LSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQT 156 (1113)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344679999999999999999999988777765544
No 184
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.32 E-value=39 Score=34.06 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.=++++++++..++.++..++...+.++++++.+...|+++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666654
No 185
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=56.19 E-value=2e+02 Score=27.90 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQL 257 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeL 257 (338)
+++.+..++.++...+.++.....++...+.+++.++.
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544443
No 186
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=56.08 E-value=1.2e+02 Score=29.87 Aligned_cols=108 Identities=9% Similarity=0.111 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL----QPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL----PeDTkVYKSVGRMFVltdKdeI~eeLeEki 295 (338)
+++.+..+-.|+..++.++..+..++...+.++++-...++++-.- =..-..|=.+|+.....=...+...+.++.
T Consensus 82 ~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~ 161 (333)
T PF05816_consen 82 AKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADA 161 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcc
Confidence 3456667777777799999888888888888887777776666542 123345566666655544444444444444
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 K---SYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 296 e---slEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+ ....++..++....+|++++.+++-.+.-.+
T Consensus 162 ~~d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~ 196 (333)
T PF05816_consen 162 EGDQMDAQELADLEQALFRLEQRIQDLQLSRQVAI 196 (333)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2235666777777888888887776655443
No 187
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=55.94 E-value=2.2e+02 Score=28.62 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCC---chhhhhhcccc-cccCchHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTK-QKLKIQDIQVENFKKNKHHTQLTLTEI-KRLQPT---TNTYESVGRMF-IKTPHPEVVVN 290 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQ-QQLq~V~~QiqqlErelR~aeLTlkEL-ekLPeD---TkVYKSVGRMF-VltdKdeI~ee 290 (338)
...|..++.+|+.|+.-++ .+|..+...+..+..++..+....++. ...+.+ ...|.-+.+.= +..-.+.|++.
T Consensus 241 ~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~R 320 (388)
T PF04912_consen 241 SSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVER 320 (388)
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4456666777777666553 255666666665555555444444443 111222 23566666541 12224444444
Q ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LE------KKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 291 Le------EkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
|+ +....+-..+..|+.+...|+..+++.+.-|.
T Consensus 321 L~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~ 360 (388)
T PF04912_consen 321 LKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLN 360 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33444444445555555444444444443333
No 188
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=55.92 E-value=2.8e+02 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
+..++.+.+++|+.|+.+..|..+++.++.-..-..++|..
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~ 179 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQA 179 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777788888888888888888888777777777763
No 189
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.59 E-value=1.6e+02 Score=34.20 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNK 252 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErel 252 (338)
+|+.++..+..+++......+.++..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l 630 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQL 630 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 190
>KOG0161|consensus
Probab=55.13 E-value=1.5e+02 Score=36.70 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEK 301 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEer 301 (338)
+++.|.-.+...+++.+........+++.+++....+.+|+.. ....-+..++ .....+.+|...+..+..+
T Consensus 1442 k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e---~~e~l~renk-----~l~~ei~dl~~~~~e~~k~ 1513 (1930)
T KOG0161|consen 1442 KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE---QLEELRRENK-----NLSQEIEDLEEQKDEGGKR 1513 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666666666666655 1122222222 2345566777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 302 IKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
+..|++-+..++.+..++|..|.|+-.
T Consensus 1514 v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1514 VHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666666666666543
No 191
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.69 E-value=1.1e+02 Score=28.30 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
|++..+.+..+++.|+++.+.|++++...++.-+.++
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 192
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=54.55 E-value=74 Score=29.68 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCCchhhhhhcccc
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLT-LTEIKRLQPTTNTYESVGRMF 279 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLT-lkELekLPeDTkVYKSVGRMF 279 (338)
..|......+++.++.++.+++.+.+.+|..+.. ..+|..|. .+-...||+.+
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le--~~W~~~v~kn~ 192 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLE--QRWKELVSKNL 192 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHH
Confidence 3455555556666777777777777777776654 45677773 56667777753
No 193
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=54.47 E-value=99 Score=30.60 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHH
Q psy14557 219 CGDKAFAELQIKMMDT--------KQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVN 290 (338)
Q Consensus 219 ELqKaf~ELQ~KlieT--------QQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~ee 290 (338)
++-|.+.+.|.++.-. ..|+..+.+|...+..++..-+...-|| +|.+..|--.+||--+.+.+.++..-
T Consensus 27 e~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~pei--i~~n~~VL~~lgkeelqkl~~eLe~v 104 (268)
T PF11802_consen 27 ELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEI--IPLNPEVLLTLGKEELQKLISELEMV 104 (268)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCc--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566655433 4556666666666666666666555554 35566777788887666555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyL 312 (338)
|.......+.--+.|++.+++|
T Consensus 105 Ls~~q~KnekLke~LerEq~wL 126 (268)
T PF11802_consen 105 LSTVQSKNEKLKEDLEREQQWL 126 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333333333444444443
No 194
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.30 E-value=63 Score=24.32 Aligned_cols=42 Identities=12% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcc
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKI---ARYLVILIRLN 330 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeel---Q~~LrElLr~~ 330 (338)
..++.++..++.+++.++++.+.|+++++.+ .+.|.++-|..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3555666666666666666666666666655 44555554433
No 195
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.17 E-value=80 Score=24.51 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
=+.+|+.++.-.+..|..|......-++++..++++|+.+...
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666555555555565555555433
No 196
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=53.13 E-value=2.1e+02 Score=27.17 Aligned_cols=87 Identities=23% Similarity=0.279 Sum_probs=45.8
Q ss_pred ceeeccCCCCcceeecccCCCccccccccCCCC-CC-CCcCcccccceEEEeecCcc-------cccccCCCc---eeec
Q psy14557 145 GVLIQHPLPLYPITLACDSSFSGKHARNNLDSE-HS-TDDTRSTNTTSTTIVSNNSS-------LINHKGDLI---STEV 212 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~s~~~~s~~~~-------~~~~~~~~~---s~~~ 212 (338)
|+-|-+-+|- +--.+|+..+..-+|++. -+ +-...++.|++ +.+.. -|.+.|... .+-|
T Consensus 18 G~rIPr~vPa-----sLrasf~k~~i~Ydl~~~~~s~~~~~~~~~t~t----~~k~~f~~~yl~rlG~~~~s~~~~gTdf 88 (195)
T PF12761_consen 18 GYRIPREVPA-----SLRASFEKEQIDYDLNSSPQSRWKPSSSTSTST----GRKAKFGDSYLSRLGRGGKSYKEKGTDF 88 (195)
T ss_pred CCcCCccCCH-----HHHHHHhcCCcCccccchhhcccccCCCCCCcc----hhhhhhhHHHHHHhccccCCCCCCCCCC
Confidence 7777776663 334678888877778741 11 11111111111 11111 122333211 1333
Q ss_pred cCC---CcHH--HHHHHHHHHHHHHHHHHHHHH
Q psy14557 213 SDT---VVTC--GDKAFAELQIKMMDTKQKLKI 240 (338)
Q Consensus 213 ~~~---~deE--LqKaf~ELQ~KlieTQQQLq~ 240 (338)
+++ .-|+ |++.|.+|..++..+++....
T Consensus 89 S~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 89 SATEGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 2244 899999999998888887765
No 197
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.08 E-value=53 Score=26.16 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 300 EKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
.....|+..-+.|....+..++.|+.+|+.
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444555555555543
No 198
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=53.07 E-value=1.7e+02 Score=31.70 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCCchhhhhhcccccc--cCchHHHHHHHHHHHHHHHHHHHH
Q psy14557 235 KQKLKIQDIQVENFKKNKHHTQLTLTEIK-------RLQPTTNTYESVGRMFIK--TPHPEVVVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 235 QQQLq~V~~QiqqlErelR~aeLTlkELe-------kLPeDTkVYKSVGRMFVl--tdKdeI~eeLeEkieslEerIK~L 305 (338)
..++.....|...+.-.+++|..-..-+. .|..|-..|.+--+.+=. +...-.++.|+..++.-|++|+.|
T Consensus 270 ~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L 349 (622)
T COG5185 270 NTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKAL 349 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333222 344566666654333222 345567889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14557 306 ESEKAIILVPALK 318 (338)
Q Consensus 306 EKQkeyLEKqLee 318 (338)
+.++.-|.+++.+
T Consensus 350 ~~~~d~L~~q~~k 362 (622)
T COG5185 350 QSNIDELHKQLRK 362 (622)
T ss_pred HhhHHHHHHHHHh
Confidence 9999998887764
No 199
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.96 E-value=58 Score=26.60 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccC
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILV-------PALKIARYLVILIRLNT 331 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEK-------qLeelQ~~LrElLr~~~ 331 (338)
+++|+++..++..+...+..+++.|+. +-..-|+.||.+|+..+
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555555555555544444444444 44444666777776543
No 200
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=52.90 E-value=1.9e+02 Score=29.11 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14557 234 TKQKLKIQDIQVENFK 249 (338)
Q Consensus 234 TQQQLq~V~~QiqqlE 249 (338)
+++++..+..|+.++.
T Consensus 58 ~~~~~~~L~~ql~~~~ 73 (372)
T PF04375_consen 58 LQQQLQALQQQLQQLQ 73 (372)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 201
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=52.90 E-value=1.7e+02 Score=33.81 Aligned_cols=7 Identities=43% Similarity=0.970 Sum_probs=2.8
Q ss_pred cceeEee
Q psy14557 120 PNFHFVF 126 (338)
Q Consensus 120 ~~~~~~~ 126 (338)
+-|.|||
T Consensus 607 ~~~~~~l 613 (1163)
T COG1196 607 PAVRFVL 613 (1163)
T ss_pred HHHHHHh
Confidence 3344443
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.84 E-value=42 Score=32.16 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE 261 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE 261 (338)
.+.|||.++.++|+.+..++.|++.+..+++.+.-=.++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455788888888888888888888777777665543333
No 203
>PHA02047 phage lambda Rz1-like protein
Probab=52.71 E-value=83 Score=27.01 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCA 334 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a 334 (338)
.+-.++|..+.+.++.++..++++-+.|+.+.+....+|+..|..+.--|
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~Wa 82 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWA 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45678999999999999999999999999999999999999998776544
No 204
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=52.66 E-value=72 Score=26.20 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccC
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIAR-YLVILIRLNT 331 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~-~LrElLr~~~ 331 (338)
+.+...+++..++|..++.+.+-|+.+..+++. +|-.++|+-.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~ 47 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMK 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456667777777777777777777777766653 3445555443
No 205
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=52.65 E-value=82 Score=26.89 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 242 DIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 242 ~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
.-++....++..-.-++.+|+..+=.+ +-.|..+++.|++-|.-++.-...-|++|+|+...-|.++
T Consensus 32 ~e~l~~i~r~f~g~lv~~kEi~~ilG~--------~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 32 REDLLRIRRDFGGSLVTEKEIKEILGE--------GQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL 98 (99)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhCC--------CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555555555666777777776322 1256778888888888888888888888887777666554
No 206
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=52.44 E-value=1.2e+02 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHT 255 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~a 255 (338)
+++.++...+.++.....++...++++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 90 (322)
T TIGR01730 61 DYQLALQAALAQLAAAEAQLELAQRSFERA 90 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666655555555544443
No 207
>KOG4643|consensus
Probab=52.33 E-value=1.4e+02 Score=34.91 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
+++.+.-|+++|.+-..++..++..++.++.++.....-..|.-..
T Consensus 182 le~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666667776666665555544444433
No 208
>KOG4360|consensus
Probab=51.58 E-value=3.1e+02 Score=29.87 Aligned_cols=105 Identities=10% Similarity=0.147 Sum_probs=59.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHH
Q psy14557 218 TCGDKAFA-ELQIKMMDTKQKLKIQDIQVE----NFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLE 292 (338)
Q Consensus 218 eELqKaf~-ELQ~KlieTQQQLq~V~~Qiq----qlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLe 292 (338)
|+-.+.+. -.-.++.+++-|+..+.-.++ .+.+..-+.-.-+.+|..+.... -|-.+-+ .-.+.++...+
T Consensus 193 ~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~-k~~~~Ek----eel~~~Lq~~~ 267 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI-KYLRHEK----EELDEHLQAYK 267 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHH----HHHHHHHHHHH
Confidence 34343333 555555666666655533333 23333333333444444443222 1222211 12445556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+....+..+.+.++-|..-....+.++|++|+.+-
T Consensus 268 da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 268 DAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888888898888888899999999998753
No 209
>KOG0239|consensus
Probab=51.53 E-value=2.2e+02 Score=31.46 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKI 302 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerI 302 (338)
.-.++-...-...+++..+...+.....++..++.+...|..... .-......-++...+..-.++++..+..++
T Consensus 176 ~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 176 ESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-----NYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333444445555666777777777777777776666666665432 111223333444555555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 303 KDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 303 K~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
..|++....+..+...+++.+++.++.+
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTREVQEALKES 278 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665555443
No 210
>PF13166 AAA_13: AAA domain
Probab=51.26 E-value=2.7e+02 Score=29.62 Aligned_cols=41 Identities=29% Similarity=0.233 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPAL---KIARYLVILIRLN 330 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLe---elQ~~LrElLr~~ 330 (338)
.++++++.++..++.++++...|+.++. ...+.|.+.|+..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 428 SLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3333444444444444444444444322 2333444444444
No 211
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.08 E-value=1.6e+02 Score=25.26 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 247 NFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 247 qlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.+++++..-.-+.++|..+-....-++ .....+..+.+.-...++..-.+.+.++..|++.+.+++..+.++
T Consensus 46 ~YE~El~~Ha~~~~~L~~lr~e~~~~~--------~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 46 KYERELVKHAEDIKELQQLREELQELQ--------QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555543322222 122333333333333333333444445555555555555555544
Q ss_pred Hh
Q psy14557 327 IR 328 (338)
Q Consensus 327 Lr 328 (338)
-.
T Consensus 118 ~~ 119 (132)
T PF07926_consen 118 NE 119 (132)
T ss_pred HH
Confidence 43
No 212
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=51.06 E-value=3.8e+02 Score=31.74 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYE 299 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslE 299 (338)
-+..+.||+.++.++..++..+..++..++..++.. ..|...+|.+...-.+. ..+..-....+...
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L---~~e~~~~Ps~~dL~~A~----------~~l~~A~~~~~~a~ 806 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRAL---ADELAGAPSDRSLRAAH----------RRAAEAERQAESAE 806 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCCchHHHHHH----------HHHHHHHHHHHHHH
Confidence 355677888888888888888888888886655444 57789999887665552 22333345555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 300 EKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
.++...+.+.....+.+++....+++.-..
T Consensus 807 ~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~ 836 (1353)
T TIGR02680 807 RELARAARKAAAAAAAWKQARRELERDAAD 836 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666666666666666666655443
No 213
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=50.83 E-value=1.3e+02 Score=30.65 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
+.+....+.+....+..+++.|+.+...|+.+++..
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555544443
No 214
>PLN02320 seryl-tRNA synthetase
Probab=50.78 E-value=1.6e+02 Score=31.47 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 301 KIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 301 rIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+.+.|.++...|++++.+++++|.+++..+
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444455555555555666666655544
No 215
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.76 E-value=2.5e+02 Score=27.49 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCchhhh
Q psy14557 245 VENFKKNKHHTQLTLTEIKRL-QPTTNTYE 273 (338)
Q Consensus 245 iqqlErelR~aeLTlkELekL-PeDTkVYK 273 (338)
+..++.++..++.-+.++... +++.+.++
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~ 245 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPEQNPQVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Confidence 333444444444444444332 33344443
No 216
>KOG0709|consensus
Probab=50.66 E-value=2.9e+02 Score=29.50 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
.|.++++.|+.++..+..+-+.|.+|-+.|+.+-..+..+|+++-..
T Consensus 269 kKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 269 KKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred hHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 57788999999999988888888888888888877777777765433
No 217
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.55 E-value=1.9e+02 Score=31.43 Aligned_cols=46 Identities=9% Similarity=0.203 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
.+|++.+.++..++......++.+...+.++..+..+.+....+|+
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666655555555544
No 218
>KOG2189|consensus
Probab=50.17 E-value=66 Score=36.20 Aligned_cols=41 Identities=15% Similarity=0.442 Sum_probs=36.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
.+-+.-+.+|+++.+++|.++..+.+..+.|++++.++.+-
T Consensus 88 ~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~ 128 (829)
T KOG2189|consen 88 APPPREIIDLEEQLEKLESELRELNANKEALKANYNELLEL 128 (829)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999888763
No 219
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.04 E-value=2e+02 Score=30.61 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=46.0
Q ss_pred CCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 266 QPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 266 PeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..+..+|-.+...+- .-.+-++.++++.+.+.+.+..|.+.+....+++.+.+..|+++-|.
T Consensus 368 ~~~~~~yS~i~~~l~--~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~ 429 (560)
T PF06160_consen 368 EEQQVPYSEIQEELE--EIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRR 429 (560)
T ss_pred HcCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777766543 33445667777888888888888888888888888888888877654
No 220
>KOG1003|consensus
Probab=49.75 E-value=1.5e+02 Score=28.40 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccc---------cCchHHHHHHHHHHHHHH
Q psy14557 229 IKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK---------TPHPEVVVNLEKKVKSYE 299 (338)
Q Consensus 229 ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVl---------tdKdeI~eeLeEkieslE 299 (338)
.|+-+.-.+|.++.. .+++...++++....+..|.++.++-.+=-+.|-. ...+..++.|.++.+.++
T Consensus 81 rK~eEVarkL~iiE~---dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 81 RKYEEVARKLVIIEG---ELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 344444555555444 45666677777776666665555443322222211 113344555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 300 EKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~L 323 (338)
.+-+-.++...+|+++...+++.+
T Consensus 158 ~rAE~aERsVakLeke~DdlE~kl 181 (205)
T KOG1003|consen 158 TRAEFAERRVAKLEKERDDLEEKL 181 (205)
T ss_pred hhHHHHHHHHHHHcccHHHHHHhh
Confidence 554444444444444444444443
No 221
>smart00338 BRLZ basic region leucin zipper.
Probab=49.75 E-value=61 Score=24.32 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
...+.+|+.++..++.....|..+...|+..+..+...
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666555555443
No 222
>PF14282 FlxA: FlxA-like protein
Probab=49.66 E-value=76 Score=26.58 Aligned_cols=44 Identities=11% Similarity=0.300 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIES-----------EKAIILVPALKIARYLVILI 327 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEK-----------QkeyLEKqLeelQ~~LrElL 327 (338)
.+..++.|+++++.+.++|+.|.. +.+-|+.++..++.+|..+.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888887766 23346666666666666554
No 223
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.30 E-value=1.1e+02 Score=27.56 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
..++-+++|+++.++.+.+++.|++|-+-+++++
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566778889999999999999999999998875
No 224
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=49.20 E-value=59 Score=32.86 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=37.3
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy14557 278 MFIKTPHPEVVVNLEKKVKSYEEKIKDIESE----------KAIILVPALKIARYLVILI 327 (338)
Q Consensus 278 MFVltdKdeI~eeLeEkieslEerIK~LEKQ----------keyLEKqLeelQ~~LrElL 327 (338)
|+..-+-++.++.|+++++.++.+|++|+.+ .+-++++++..++.+.++-
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999999999999888774 4456666666666655544
No 225
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.18 E-value=3.5e+02 Score=28.71 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVP 315 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKq 315 (338)
++.+-+.|+.+++.|+++
T Consensus 99 Lekre~~Le~ke~~L~~r 116 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNK 116 (514)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 226
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=49.12 E-value=49 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+++.+..+|.+.+++..-++.++++++.+.++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTE 33 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555553
No 227
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=49.06 E-value=60 Score=25.21 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
+++++++..+|.+...++++.+.+.+++++....++=+++
T Consensus 16 ~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 16 DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666777777777777777777777776665444
No 228
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.95 E-value=71 Score=25.33 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
..+++.|..+.+.++..+..|.++.+.++..+..++..+.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777777777887888877777777777777776554
No 229
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.76 E-value=2.8e+02 Score=27.45 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
.++.+.+.+++..-.++.++|..+..+.+.+.++++..+.-.++|...
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777788888888888888888877777766666643
No 230
>KOG0980|consensus
Probab=48.74 E-value=2.5e+02 Score=32.39 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
..+..+.|+.+...+..+++.|+.....+.....+.-.+|...+
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l 535 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLL 535 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554443333333333333333
No 231
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=47.70 E-value=40 Score=26.02 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
++|.|+..||++.+..+++++..+.+++.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777777665
No 232
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=47.51 E-value=1.5e+02 Score=25.38 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=42.5
Q ss_pred HHHHHhccCCCchhhhhhccc-ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 258 TLTEIKRLQPTTNTYESVGRM-FIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 258 TlkELekLPeDTkVYKSVGRM-FVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..+-|-.|..+..-+|.++|. |-+=.-.+ .=..+..+.+|..|+.+..+....++.+.+.|...++-
T Consensus 21 mAEvLinlks~~~esrklaky~~sKLNlte-----sitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkv 88 (99)
T PF11083_consen 21 MAEVLINLKSDDPESRKLAKYDFSKLNLTE-----SITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKV 88 (99)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHcCCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777777764 21111111 12356677788888888888888888888888776653
No 233
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.45 E-value=4.4e+02 Score=29.33 Aligned_cols=6 Identities=33% Similarity=0.373 Sum_probs=3.6
Q ss_pred cccccC
Q psy14557 132 ICRTSN 137 (338)
Q Consensus 132 ~~~~~~ 137 (338)
+|.|++
T Consensus 457 l~lts~ 462 (717)
T PF10168_consen 457 LALTSS 462 (717)
T ss_pred EEEccC
Confidence 566655
No 234
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.30 E-value=71 Score=26.86 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCchhhhhh
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKN-KHHTQLTLTEIKRLQPTTNTYESV 275 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlEre-lR~aeLTlkELekLPeDTkVYKSV 275 (338)
++++.+.+++++....+++-+.+..++..++.. --.-+++.++|.=+-+|-.+|.-+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~~ 88 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRIV 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEeC
Confidence 566666666666666677767777777766663 233346777777776676776433
No 235
>PRK14127 cell division protein GpsB; Provisional
Probab=47.16 E-value=50 Score=28.43 Aligned_cols=56 Identities=9% Similarity=0.230 Sum_probs=47.4
Q ss_pred hhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 271 TYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 271 VYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.|+..-|=|=...+++.++++-+..+.+..++..|+.+...|++++.+.+.++...
T Consensus 15 eF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 15 EFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444466778889999999999999999999999999999999999999988754
No 236
>KOG2483|consensus
Probab=47.14 E-value=85 Score=30.27 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 251 NKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 251 elR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
.+|.+-=+++++--+-++.+.+- +.-|+...-+.+..|+.+..+....|+.|+++...|++++++++.
T Consensus 73 hlk~~~~~Lk~~vP~~~~~~~~t---~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~ 140 (232)
T KOG2483|consen 73 HLKDCFESLKDSVPLLNGETRST---TLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSL 140 (232)
T ss_pred HHHHHHHHHHHhCCCCCCcchhh---hhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34666667777777766777765 788888889999999999999999999999999999999998773
No 237
>KOG1937|consensus
Probab=46.90 E-value=2.8e+02 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDI 243 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~ 243 (338)
.|+..+.+++.++.+..||...++.
T Consensus 297 KL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 297 KLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777888888888777555443
No 238
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=46.69 E-value=2.6e+02 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccc
Q psy14557 241 QDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFI 280 (338)
Q Consensus 241 V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFV 280 (338)
+..|+..+......+..-.+||+.|-...+--+..++-..
T Consensus 48 L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 48 LRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555556666666443333344444333
No 239
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=46.52 E-value=1.9e+02 Score=27.02 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccc--cc-CchHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 239 KIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFI--KT-PHPEV---VVNLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 239 q~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFV--lt-dKdeI---~eeLeEkieslEerIK~LEKQkeyL 312 (338)
+.+...|..+|.++..|+-..+-| ..+|.-|+.|=.--. .. ...++ ..+|..+...++.|-.-||||.+|+
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~L---S~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyM 83 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQL---SRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYM 83 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446666777777766655444 445677776643111 11 12222 4588899999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy14557 313 LVPALKIARYLVILI 327 (338)
Q Consensus 313 EKqLeelQ~~LrElL 327 (338)
.+-+..++.+=..++
T Consensus 84 Rkmv~~ae~er~~~l 98 (178)
T PF14073_consen 84 RKMVESAEKERNAVL 98 (178)
T ss_pred HHHHHHHHHhhhHHH
Confidence 988887765444433
No 240
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=46.29 E-value=63 Score=28.68 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=45.2
Q ss_pred hhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 274 SVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 274 SVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.++-|||-+.-..|+.-.++-+..-++-|..|+..-.+|...+-.+|+-..+
T Consensus 59 ~~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~e 110 (126)
T PF13118_consen 59 ALDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEE 110 (126)
T ss_pred ccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999999999999999999999999988888887776644
No 241
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=46.06 E-value=1.2e+02 Score=22.51 Aligned_cols=19 Identities=5% Similarity=0.256 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIES 307 (338)
Q Consensus 289 eeLeEkieslEerIK~LEK 307 (338)
..+.++...+..+-..|..
T Consensus 76 ~~i~~~~~~l~~~w~~l~~ 94 (105)
T PF00435_consen 76 DEIQEKLEELNQRWEALCE 94 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 242
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=45.95 E-value=4e+02 Score=31.60 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=12.2
Q ss_pred ChHHHHHHHHH-Hhhhhhc
Q psy14557 43 NPEHRAKILAA-VQVMHEY 60 (338)
Q Consensus 43 dp~hR~rlL~A-v~~L~~~ 60 (338)
|-.=+..+|.| ...|.+-
T Consensus 33 NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 33 NGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CCCcHHHHHHHHHHHHhcC
Confidence 44567888888 6676654
No 243
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.93 E-value=83 Score=28.58 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccC
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTL----TEIKRLQ 266 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTl----kELekLP 266 (338)
|.+|.+.+.+++. -++.+++|..++.++..++..++.+...+ ++|..++
T Consensus 11 d~~L~~~L~~l~~-hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 11 DDELSSALEELQE-HQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677787777754 55567777777777776666666555544 3444444
No 244
>PRK14629 hypothetical protein; Provisional
Probab=45.85 E-value=30 Score=29.18 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 214 DTVVTCGDKAFAELQIKMMDTKQKLKI 240 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~KlieTQQQLq~ 240 (338)
.+.|-.+.|..+++|.++.++|++|..
T Consensus 2 ~~~~~~~mkqaq~mQ~km~~~Q~eL~~ 28 (99)
T PRK14629 2 AVNPLDFLKNMSSFKDNIDNIKKEISQ 28 (99)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778899999999988888877655
No 245
>PRK11281 hypothetical protein; Provisional
Probab=45.74 E-value=2.7e+02 Score=32.58 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
....+++....+.+++...++++.+.--++++.+
T Consensus 75 i~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3334444455555555555555555555555544
No 246
>PRK00736 hypothetical protein; Provisional
Probab=45.62 E-value=1.3e+02 Score=23.43 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+=+.+|+.++.-.+.-|..|.+....-++++..++++|+.+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667766666666666666666555555555555555443
No 247
>PRK01203 prefoldin subunit alpha; Provisional
Probab=45.56 E-value=2.2e+02 Score=25.29 Aligned_cols=93 Identities=10% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhh-----cccccc-----------cCchH---------
Q psy14557 232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESV-----GRMFIK-----------TPHPE--------- 286 (338)
Q Consensus 232 ieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSV-----GRMFVl-----------tdKde--------- 286 (338)
.+.-.+++.+.+|++.+..++...+.+..++..- ....+.. ..++|. .+.+.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~---ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy 79 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQT---ISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV 79 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence 3567899999999999999999999999998652 2233222 224553 22333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 -VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 287 -I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+.+..+++++.++++++.|++-.....+.++.+++.+.++.
T Consensus 80 ~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 80 YIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566778888888888888877777777777777777664
No 248
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=45.24 E-value=3.3e+02 Score=27.29 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ 256 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ae 256 (338)
.++|+-...++..-+.+.++.+.....++..++..++.-+
T Consensus 69 ~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 69 STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666666666666665555433
No 249
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=45.12 E-value=1.9e+02 Score=25.87 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=41.9
Q ss_pred hhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 273 ESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 273 KSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
|..|=+++-...+.-.+-++++++.+.++.++++++.++|..-+......
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788888899999999999999999999999998887766554
No 250
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.99 E-value=2.6e+02 Score=25.96 Aligned_cols=102 Identities=10% Similarity=0.129 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccc-----ccCchHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFI-----KTPHPEVVVNLEK 293 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFV-----ltdKdeI~eeLeE 293 (338)
.|+..+.+|..+.....+.+..+.++...+.--++.++.-..||.. ...-|..-=..+. ......-+.+|+-
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k---~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK---QLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666666665555555555554443 2334433111000 0112333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
..+.++.+..+++..++-|..++..+...+
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555444444443333
No 251
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=44.83 E-value=2.5e+02 Score=25.64 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=42.8
Q ss_pred eeeccCCCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 209 STEVSDTVVTCGDKAFA---ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 209 s~~~~~~~deELqKaf~---ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
|-.|..-+.+++++|+. ++|.++.-.+++-+.++.....+++.++...-|.+--+.|
T Consensus 68 S~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 68 SRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456678999987 6778888888888888888888888888877777665555
No 252
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=44.70 E-value=13 Score=39.26 Aligned_cols=37 Identities=38% Similarity=0.631 Sum_probs=28.5
Q ss_pred ecccccccc---ccCCCCCcccceeeccCCCCcceeecccC
Q psy14557 126 FDIFPGICR---TSNQNDGHKAGVLIQHPLPLYPITLACDS 163 (338)
Q Consensus 126 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (338)
|+||||-.- .+| .+|.+--|---||+|.|||.-+.|+
T Consensus 251 yS~FpGQIVavKGkN-~~G~~ftv~~ilpiP~~p~~p~s~~ 290 (581)
T COG5214 251 YSVFPGQIVAVKGKN-TDGGKFTVEAILPIPVVPINPASDG 290 (581)
T ss_pred cccccccEEEEeccc-CCCCeEEeeeeeccCCcCCCcCcch
Confidence 899999543 333 4677888888899999999877664
No 253
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=44.62 E-value=2.7e+02 Score=29.46 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
+.+..-+.+.+.||.+..|||....+++..-+...+..+.
T Consensus 252 e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q 291 (499)
T COG4372 252 EQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ 291 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445566667777777777777777766655554443
No 254
>KOG1029|consensus
Probab=44.43 E-value=3e+02 Score=31.68 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQK 237 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQ 237 (338)
-.+.+|..|+++++-.
T Consensus 451 ~k~qqls~kl~Dvr~~ 466 (1118)
T KOG1029|consen 451 FKLQQLSGKLQDVRVD 466 (1118)
T ss_pred HHHHHHhhhhhhheec
Confidence 3467777777765433
No 255
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=44.19 E-value=1.9e+02 Score=26.22 Aligned_cols=8 Identities=0% Similarity=0.135 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy14557 318 KIARYLVI 325 (338)
Q Consensus 318 elQ~~LrE 325 (338)
+++.+|.+
T Consensus 167 ~L~~~I~~ 174 (184)
T PF05791_consen 167 QLQKQIEN 174 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 256
>PRK04325 hypothetical protein; Provisional
Probab=44.19 E-value=1.2e+02 Score=24.15 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+.+|+.++.-.+.-|..|.+....-++++..++++|+-+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554555555444433
No 257
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.99 E-value=3.6e+02 Score=27.27 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccC-CCchhhhhh
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFK----KNKHHTQLTLTEIKRLQ-PTTNTYESV 275 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlE----relR~aeLTlkELekLP-eDTkVYKSV 275 (338)
-+.+.||..++..+...-+.-.-|++.++ .+++..+....|...|. ++..+-+.+
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c 76 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC 76 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 34456666666655554444444555444 44455555555555553 333333333
No 258
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.97 E-value=2.5e+02 Score=25.48 Aligned_cols=46 Identities=4% Similarity=0.013 Sum_probs=36.8
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 280 IKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 280 VltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
....+....+.|.+....+......++.+...|++.-.++.+.+-+
T Consensus 138 ~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 138 ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888999999999999999999998888887765543
No 259
>KOG2577|consensus
Probab=43.93 E-value=62 Score=33.14 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHhcc------CCCchhhhhhcccccccCchHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLK--IQD--IQVENFKKNKHHTQLTLTEIKRL------QPTTNTYESVGRMFIKTPHPEVVV 289 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq--~V~--~QiqqlErelR~aeLTlkELekL------PeDTkVYKSVGRMFVltdKdeI~e 289 (338)
-.+.|.=|-+|++++-|+-. +++ .=-..|+.++||+.=-..-|+.+ ..+-.-|+++|-+- ..
T Consensus 69 ~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L~VqKRRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~--------~~ 140 (354)
T KOG2577|consen 69 SDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVLNVQKRRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNS--------TG 140 (354)
T ss_pred chhhHHHHHHHHHHHHHhCCCceeeHHHHHHHhccccceeeehhhhhhcccceeeccccceeeecCCCcc--------cc
Confidence 34555555666666655533 111 12234445566665444445444 45666777777664 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
+..++.+.++.++..|+.+++.|++.+...+.+|+.+...
T Consensus 141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted 180 (354)
T KOG2577|consen 141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTED 180 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5567778888899999999999999999999999887643
No 260
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=43.55 E-value=2.3e+02 Score=24.95 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIE 306 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LE 306 (338)
...++++.++-.+.++.+|+.-+
T Consensus 91 Yk~llk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 91 YKELLKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 261
>KOG0980|consensus
Probab=43.50 E-value=3.1e+02 Score=31.62 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhhh
Q psy14557 45 EHRAKILAAVQVMHE 59 (338)
Q Consensus 45 ~hR~rlL~Av~~L~~ 59 (338)
.||.|--.--..|++
T Consensus 223 ghRdRf~~qf~rLk~ 237 (980)
T KOG0980|consen 223 GHRDRFHTQFERLKQ 237 (980)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455555444444443
No 262
>KOG2180|consensus
Probab=43.45 E-value=2.1e+02 Score=32.19 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccCCCchhhhhhcccccccCchHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI-------KRLQPTTNTYESVGRMFIKTPHPEVVVNL 291 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL-------ekLPeDTkVYKSVGRMFVltdKdeI~eeL 291 (338)
+++.++.||-+++++++......+..++..-|+++....+.+-| ..|-==+.-|++++.|-=+.+-.++..-|
T Consensus 76 da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~l 155 (793)
T KOG2180|consen 76 DAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPL 155 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHH
Confidence 55666666666666666666666666655555555555444433 22322256799999999999999999988
Q ss_pred HHHHHHHH
Q psy14557 292 EKKVKSYE 299 (338)
Q Consensus 292 eEkieslE 299 (338)
+.-..-++
T Consensus 156 qai~~ll~ 163 (793)
T KOG2180|consen 156 QAILQLLN 163 (793)
T ss_pred HHHHHHHH
Confidence 88777666
No 263
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.38 E-value=4.8e+02 Score=29.17 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
++-+..|-.-+...-.+..+-+..+..+...++..+++++....|++.+
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~ 549 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKL 549 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344333334344444444445555555555555555555555444
No 264
>PRK04406 hypothetical protein; Provisional
Probab=43.34 E-value=1.1e+02 Score=24.38 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+.+|+.++.-.+.-|..|.+....-++++..++++|+.+
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444445544444
No 265
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=43.23 E-value=1.5e+02 Score=22.83 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=39.6
Q ss_pred hhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy14557 274 SVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAI-ILVPALKIARYLVILI 327 (338)
Q Consensus 274 SVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkey-LEKqLeelQ~~LrElL 327 (338)
.+|-+|-..+-.++.++|.+..+.+...++.+-.+-.. +..++++..+++++-+
T Consensus 14 ~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~ 68 (74)
T PF12732_consen 14 AAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADEAKEKA 68 (74)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788899999999999888888777766444 6777777666555543
No 266
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=43.19 E-value=2.4e+02 Score=30.73 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
...++..++..++.++....++...|++.++++
T Consensus 379 ~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555655555555555555555433
No 267
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.13 E-value=1.3e+02 Score=23.98 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
+.+.+|.+||..+-.++++...+..|...+.+...+..-+++-|
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677778888888888888888888888887777665554443
No 268
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=43.07 E-value=1.2e+02 Score=23.47 Aligned_cols=48 Identities=6% Similarity=0.179 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ 266 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP 266 (338)
.+.+.+..++++..+++.+-..+..++..+...-+.-+++.++|.=.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~lgM~~ 75 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQLGMKL 75 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCC
Confidence 455666677777777777777788888888887788888888865333
No 269
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=42.93 E-value=97 Score=25.29 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=36.2
Q ss_pred ccccccCCCceeeccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 199 SLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 199 ~~~~~~~~~~s~~~~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
..+=+.|.+.+... .+.+|..=++.+...++.++..+..++..++..++..+-+..++
T Consensus 60 ~vlV~lG~~~~vE~------s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 60 KVLVSLGAGYYVEM------SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EEEEEEETTEEEEE------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEEeeCCeEEEe------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677766666 44556666666666666666666666666666666666665554
No 270
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=42.65 E-value=1.4e+02 Score=33.85 Aligned_cols=55 Identities=7% Similarity=0.098 Sum_probs=35.0
Q ss_pred ccCCCcHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 212 VSDTVVTCGDKAFAELQIKMM-------------DTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ 266 (338)
Q Consensus 212 ~~~~~deELqKaf~ELQ~Kli-------------eTQQQLq~V~~QiqqlErelR~aeLTlkELekLP 266 (338)
+++..|.|++..+.|+..=+- +..=.++-++....+|-|.+|...--++|=++.+
T Consensus 350 Vaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~ 417 (861)
T PF15254_consen 350 VAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAE 417 (861)
T ss_pred HhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 356678899998888876331 1111244455566677777777777777766654
No 271
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.61 E-value=4.5e+02 Score=28.10 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
.+.|+-..-++.+ ++++++.+..|-+.+..+-.+.+.....+. ..|-..+.....
T Consensus 58 ~DTlrTlva~~k~----~r~~~~~l~~~N~~l~~eN~~L~~r~~~id---------------------~~i~~av~~~~~ 112 (472)
T TIGR03752 58 ADTLRTLVAEVKE----LRKRLAKLISENEALKAENERLQKREQSID---------------------QQIQQAVQSETQ 112 (472)
T ss_pred cchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---------------------HHHHHHHHhhhH
Confidence 3455544444444 666666666666666555554432222221 123333444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.+..+...|+.++..++..+.+++++|..+.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555666666666667777777777665543
No 272
>KOG4673|consensus
Probab=42.55 E-value=3.3e+02 Score=30.87 Aligned_cols=89 Identities=12% Similarity=0.211 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccC----chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 234 TKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTP----HPEVVVNLEKKVKSYEEKIKDIESEK 309 (338)
Q Consensus 234 TQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltd----KdeI~eeLeEkieslEerIK~LEKQk 309 (338)
+.++++.+..-++..+.++.-.+....+|.. ..-..|-+||+... ...+.++--.++..++.++..+-|.+
T Consensus 351 ~~~~i~~Ln~~leaReaqll~~e~~ka~lee-----~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kER 425 (961)
T KOG4673|consen 351 TKKEIKMLNNALEAREAQLLADEIAKAMLEE-----EQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKER 425 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444444333333333333333332 12234555666543 45667777788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14557 310 AIILVPALKIARYLVILI 327 (338)
Q Consensus 310 eyLEKqLeelQ~~LrElL 327 (338)
..|.++.+.+.++|...|
T Consensus 426 Dalr~e~kslk~ela~~l 443 (961)
T KOG4673|consen 426 DALRREQKSLKKELAAAL 443 (961)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999988888777776544
No 273
>PRK00295 hypothetical protein; Provisional
Probab=42.40 E-value=1.5e+02 Score=23.11 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
=+.+|+.++.-.+.-|..|.+....-++++..++++|+.+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665555555555555555544
No 274
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=42.37 E-value=3.6e+02 Score=26.88 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQK-------LKIQDIQVENFKKNKH 253 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQ-------Lq~V~~QiqqlErelR 253 (338)
.++..+.+++.++.+..+. +..++.|++.++..++
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556666666666666553 5566667777766654
No 275
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.36 E-value=2.1e+02 Score=28.62 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.-+++.++++|...++.|..++.++..+|.+.
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999988888888888654
No 276
>PLN02320 seryl-tRNA synthetase
Probab=42.21 E-value=1.6e+02 Score=31.53 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
.++|.++.+.+.++++.|+.+...++.++.++.-.|
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 366777888899999999999999988888765543
No 277
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=42.12 E-value=3.7e+02 Score=28.36 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccc-----------ccCchHHHHHH---HHHH
Q psy14557 230 KMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFI-----------KTPHPEVVVNL---EKKV 295 (338)
Q Consensus 230 KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFV-----------ltdKdeI~eeL---eEki 295 (338)
.+.+....+..+..++...+.-.....-|..+|..|...-..|+. +++=- ......+..+| +..+
T Consensus 219 ~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~-~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L 297 (522)
T PF05701_consen 219 ELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE-SKLEEEAEAKEKSSELQSSLASAKKELEEAKKEL 297 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333344455666666555555554 33211 11133333333 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
.....++..|...-..|...++.....|..+-.
T Consensus 298 ~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 298 EKAKEEASSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777777777766666665443
No 278
>KOG0964|consensus
Probab=41.97 E-value=4.5e+02 Score=30.93 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLT 260 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlk 260 (338)
+.+..|.+||..+.+....+.-++++|.++..+++.++.-..
T Consensus 675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~ 716 (1200)
T KOG0964|consen 675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRN 716 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 566777888888888888888888888888777777765443
No 279
>PF14992 TMCO5: TMCO5 family
Probab=41.82 E-value=1.7e+02 Score=29.20 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYE 299 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslE 299 (338)
+.+-.++|-.+-+..=++++.....++.+++++-...=.+++- .+.+.+..+-+.....++
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~-------------------e~e~~~~~~~e~~l~~le 69 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS-------------------EEEDIISEERETDLQELE 69 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch-------------------hHHhhhhhchHHHHHHHH
Confidence 3444455555445555555555555555555543322111111 233444455555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 300 EKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.+..+||+.-+++-+.+.++|+++.+
T Consensus 70 ~e~~~LE~~ne~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 70 LETAKLEKENEHLSKSVQELQRKQDE 95 (280)
T ss_pred hhhHHHhhhhHhhhhhhhhhhhhhcc
Confidence 77777777777777777777776653
No 280
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.53 E-value=2.4e+02 Score=24.55 Aligned_cols=45 Identities=7% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
+.++..+..+...+..++.++..+..++..+..++-..---.+++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777777777777766665544444443
No 281
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.50 E-value=2.8e+02 Score=25.28 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~L 305 (338)
-|.+-+.++...+..+...+.......+..+.-..++... ..-|..=-+.-+....+++....-.++..++..+..|
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~---~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEE---AEKWEKQAELALAAGREDLAREALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666555555555555555555554443 3334444444455556555544444444444444444
Q ss_pred HHHHHHHHHHHHH
Q psy14557 306 ESEKAIILVPALK 318 (338)
Q Consensus 306 EKQkeyLEKqLee 318 (338)
+.+...+..++.+
T Consensus 104 ~~~~~~~~~~~~~ 116 (221)
T PF04012_consen 104 EQQLDQAEAQVEK 116 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 4444443333333
No 282
>PRK04406 hypothetical protein; Provisional
Probab=41.48 E-value=1.4e+02 Score=23.83 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.+++++..+|.++.=.+...+.|.+.+-+.|..|..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L 44 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKM 44 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444333
No 283
>PF14282 FlxA: FlxA-like protein
Probab=41.15 E-value=84 Score=26.32 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 238 LKIQDIQVENFKKNKHHTQ 256 (338)
Q Consensus 238 Lq~V~~QiqqlErelR~ae 256 (338)
++.+..||+.++.++...+
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 284
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=41.09 E-value=3.3e+02 Score=27.72 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
+|-+.+.+++.+..++++-++.+-.-|.+|...+|....|..-|..|-==+..|..+..+.-.....++..-|..-.+.+
T Consensus 68 ~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 68 ELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL 147 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45555667777777777778888888888887777777777777666444566777777777777777766665554444
Q ss_pred H--------HHHHHHHHHHHHHHHHHH
Q psy14557 299 E--------EKIKDIESEKAIILVPAL 317 (338)
Q Consensus 299 E--------erIK~LEKQkeyLEKqLe 317 (338)
+ .+|..|-++...|+..+.
T Consensus 148 ~~F~~yksi~~I~~L~~~i~~l~~~L~ 174 (383)
T PF04100_consen 148 EHFKPYKSIPQIAELSKRIDQLQNELK 174 (383)
T ss_pred HHHHcccCcHHHHHHHHHHHHHHHHHH
Confidence 2 255555555555555544
No 285
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=41.08 E-value=22 Score=31.41 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=45.7
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccc----cCCCChHHHHHHHHHHhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNY----LKILNPEHRAKILAAVQVMH 58 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~e----lgI~dp~hR~rlL~Av~~L~ 58 (338)
..+|..+||..-.=.-+.+..-+||.+.+|.|..|.+ .|.. .|.++||.+|...|+
T Consensus 70 ~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~-~EE~rRL~~Al~~LR 129 (129)
T PF13543_consen 70 RQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAR-EEECRRLCRALSNLR 129 (129)
T ss_pred HHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCC-HHHHHHHHHHHHhcC
Confidence 3577888887766666677899999999999998765 5766 899999999998875
No 286
>KOG0995|consensus
Probab=41.07 E-value=2.8e+02 Score=30.38 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHH-HHHHhc--cCCCchhhhhhc-ccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 246 ENFKKNKHHTQLT-LTEIKR--LQPTTNTYESVG-RMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 246 qqlErelR~aeLT-lkELek--LPeDTkVYKSVG-RMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
..+...++++.+- ..-... +.+...-|.+|+ +..|...-.++..+..+...+.+.+..+|+....-+.-.+++...
T Consensus 381 ~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~ 460 (581)
T KOG0995|consen 381 IDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQ 460 (581)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544 222222 334555666665 356666666666666666666666666666665555555554444
Q ss_pred HHH
Q psy14557 322 YLV 324 (338)
Q Consensus 322 ~Lr 324 (338)
.++
T Consensus 461 ~l~ 463 (581)
T KOG0995|consen 461 ILG 463 (581)
T ss_pred HHH
Confidence 443
No 287
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.93 E-value=1.4e+02 Score=23.54 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
=+.+|+.++.-.+.-|..|.+....-++++..++++|+.+
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555444
No 288
>KOG0971|consensus
Probab=40.93 E-value=2.5e+02 Score=32.74 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKA 310 (338)
Q Consensus 232 ieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQke 310 (338)
......+..+..+++.+.|++-.++-+..+|..= |=-++|--=|.+-..+-.=+|+++++.+++.|..||.-++
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ-----VDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee 479 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQ-----VDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEE 479 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 3355566677777777777777777777777642 2234554222223333344567777777777777665443
No 289
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=40.82 E-value=90 Score=33.37 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=28.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
.+.+.-.+++.+++..+.+++++|+.+.+.++++++.++
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666677777777888888888888877777777654
No 290
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.43 E-value=3.8e+02 Score=26.51 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFK----KNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKK 294 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlE----relR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEk 294 (338)
.++.++..++.++.++++++..+..--..++ +.+.+.+.+.+-|.+|.. | ++..+++.++-
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~-------v--------RPAfmdEyEkl 230 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS-------V--------RPAFMDEYEKL 230 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c--------ChHHHHHHHHH
Confidence 6777778888888888888877666555433 223344445555555531 1 33334443333
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDI---ESEKAIILVPALKIARYL 323 (338)
Q Consensus 295 ieslEerIK~L---EKQkeyLEKqLeelQ~~L 323 (338)
.+.+..--..+ =+...||+.++++..+.=
T Consensus 231 E~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~e 262 (267)
T PF10234_consen 231 EEELQKLYEIYVEKFRNLDYLEHQLEEYNRRE 262 (267)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33332222222 245678888887766543
No 291
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=40.20 E-value=3.9e+02 Score=26.59 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=39.9
Q ss_pred EEeecCcccccccCCCceeec-----c-CCCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 192 TIVSNNSSLINHKGDLISTEV-----S-DTVVTCGDKAFAELQIKMMD----TKQKLKIQDIQVENFKKNKHHTQLT 258 (338)
Q Consensus 192 ~~~s~~~~~~~~~~~~~s~~~-----~-~~~deELqKaf~ELQ~Klie----TQQQLq~V~~QiqqlErelR~aeLT 258 (338)
+.|-+.++-=+-+|-+++|.- . +.-.-||||.+.+.+.-..+ ..+|+..+.+|.+.+.-++|+.+|.
T Consensus 132 l~vleR~~~G~~yG~ll~~~~ngq~l~Gd~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~ 208 (289)
T COG4985 132 LAVLERSRGGQLYGKLLRFDSNGQELDGDPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLN 208 (289)
T ss_pred heeeeeccCcchhhheeeeccCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555666666522 1 11223888888877653222 2356777777777777777777764
No 292
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=40.18 E-value=66 Score=26.45 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.-+++|+.+..-+-..++.+++-+.....++..+++.++.+
T Consensus 7 k~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999988743
No 293
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.15 E-value=62 Score=34.34 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=35.0
Q ss_pred hcccccccCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 275 VGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIE-------SEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 275 VGRMFVltdKdeI~eeLeEkieslEerIK~LE-------KQkeyLEKqLeelQ~~LrElLr~ 329 (338)
|-.-|-...-..-+.+-+.+.+.+|.+++.|+ ++++.++.++++++.+++.+-..
T Consensus 58 V~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 58 VDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44556666656666666666666666666665 45556777777777777766544
No 294
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.11 E-value=3.7e+02 Score=31.55 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
++-.+|-++......++..+..+....+..+...
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~ 298 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQV 298 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777766666655554433
No 295
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=39.95 E-value=2.8e+02 Score=24.96 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------chhhhhhcccccccCchH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPT---------TNTYESVGRMFIKTPHPE 286 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeD---------TkVYKSVGRMFVltdKde 286 (338)
.+......+.+|+.+-..++++|..-..++..+ =+++++||-. ||++ .++=|-||..|-..+..-
T Consensus 26 ~~~~~~e~~~~Lk~rk~~Lee~L~~kl~ELk~l--ClrEAELTG~----LP~E~PL~pGEk~P~iRRRvGtafkl~~~~~ 99 (138)
T PF11819_consen 26 EEAAKKERLRALKKRKQALEERLAQKLEELKKL--CLREAELTGE----LPPEYPLEPGEKPPKIRRRVGTAFKLDEQNI 99 (138)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcc----CCCccCCCCCCCCCccccccCccccCchhhc
Confidence 334566667778887777777777655444333 3567777743 3333 356788999998877544
Q ss_pred H
Q psy14557 287 V 287 (338)
Q Consensus 287 I 287 (338)
+
T Consensus 100 l 100 (138)
T PF11819_consen 100 L 100 (138)
T ss_pred c
Confidence 3
No 296
>KOG4374|consensus
Probab=39.90 E-value=14 Score=35.35 Aligned_cols=61 Identities=23% Similarity=0.146 Sum_probs=52.3
Q ss_pred hhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCccc
Q psy14557 6 DMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDE 67 (338)
Q Consensus 6 e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~ 67 (338)
++.+|+.|...|.++ ++++++|..+.++.|.+|||.-=+-|.+.|.|.+.+-+......++
T Consensus 126 ~~~~l~s~~~~~~~~-~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~ 186 (216)
T KOG4374|consen 126 SRLGLESYIKEFNLQ-EIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEE 186 (216)
T ss_pred Hhhcccccchhhhcc-hHhhhhcccccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 468999999999985 8899999999999999999999999999999999876644444433
No 297
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.76 E-value=2e+02 Score=23.28 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyL 312 (338)
..+++++++.++.+++.++.+...+
T Consensus 76 ~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 76 VKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888776654
No 298
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=39.68 E-value=4.5e+02 Score=27.77 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYE 299 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslE 299 (338)
+...+..|...+....+.-..+..|+..+++.++-++-+.+-..+ ++.+| -..+..+-..+...+-
T Consensus 283 veelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~K--------EAqar------eaklqaec~rQ~qlaL 348 (442)
T PF06637_consen 283 VEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGK--------EAQAR------EAKLQAECARQTQLAL 348 (442)
T ss_pred HHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH------HHHHHHHHHHHHHHHH
Confidence 334444555555555555555555666666654443322221111 11111 1134444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 300 EKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
++..+|.|.++.|.|++++-++++..+.
T Consensus 349 EEKaaLrkerd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 349 EEKAALRKERDSLAKELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888777776654
No 299
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.65 E-value=4.2e+02 Score=29.43 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=9.2
Q ss_pred cCCCChHHHHHHHHHHh
Q psy14557 39 LKILNPEHRAKILAAVQ 55 (338)
Q Consensus 39 lgI~dp~hR~rlL~Av~ 55 (338)
.|...-.-|+++..||.
T Consensus 151 GGwSq~RY~R~vh~av~ 167 (652)
T COG2433 151 GGWSQNRYRRRVHGAVK 167 (652)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 34444455566666654
No 300
>COG5293 Predicted ATPase [General function prediction only]
Probab=39.55 E-value=2.8e+02 Score=29.98 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc--CCC-chhhhhhcccc---cccCchHH
Q psy14557 230 KMMDTKQKLKIQDIQVEN-------FKKNKHHTQLTLTEIKRL--QPT-TNTYESVGRMF---IKTPHPEV 287 (338)
Q Consensus 230 KlieTQQQLq~V~~Qiqq-------lErelR~aeLTlkELekL--PeD-TkVYKSVGRMF---VltdKdeI 287 (338)
++.++...++.++.||.. .+...++.++.+++ ..+ |++ ...|+-||-.| |+++-+.|
T Consensus 256 ~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~-~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v 325 (591)
T COG5293 256 DYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKE-QILFCPDEIQVLYEEVGVLFPGQVKKDFEHV 325 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchh-hccCChHHHHHHHHHhhhcChHHHHHhHHHH
Confidence 344555556666666655 44556667777777 555 333 57899999886 44444443
No 301
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=39.53 E-value=2.1e+02 Score=23.34 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=27.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLee 318 (338)
...+.=.++|-+.+..+|.+|..||.+...|..++-+
T Consensus 50 ~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 50 SSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566777788888899988888888887776643
No 302
>KOG2129|consensus
Probab=39.41 E-value=4.8e+02 Score=28.00 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=31.5
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 279 FIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 279 FVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
|++..+.-+...|..-.+...++...+-..+..++...+.+|+.|+.-|.
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~e 306 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELE 306 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444555555565566666666666666666777777777777765443
No 303
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=39.12 E-value=62 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
-|....+.++++++.+..+.+.+++.+++..++++.+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555544
No 304
>PHA01750 hypothetical protein
Probab=39.03 E-value=1.2e+02 Score=24.56 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
|++|.+=.+.+...+..+|..+.++...|++++++..+++
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4444444455555566666666666666666666655544
No 305
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.03 E-value=2.9e+02 Score=30.69 Aligned_cols=12 Identities=8% Similarity=0.107 Sum_probs=5.9
Q ss_pred eeEeeccccccc
Q psy14557 122 FHFVFDIFPGIC 133 (338)
Q Consensus 122 ~~~~~~~~~~~~ 133 (338)
.++|+.-.|.-+
T Consensus 425 Ve~llcT~~~~~ 436 (717)
T PF10168_consen 425 VEYLLCTKPLSS 436 (717)
T ss_pred eEEEeccCCCCC
Confidence 455555555433
No 306
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=38.75 E-value=37 Score=28.05 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
.++...-|+++.+.++.+|+.|+.....|+..+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 77 IPERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777666554
No 307
>PRK02119 hypothetical protein; Provisional
Probab=38.71 E-value=1.6e+02 Score=23.35 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+.+|+.++.-.+.-|..|......-++++..++++|+.+
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555444444444444444444443
No 308
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=38.54 E-value=1.5e+02 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 289 VNLEKKVKSYEEKIKD-------IESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 289 eeLeEkieslEerIK~-------LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
++|+++...+..++.. |+.+-+.|......=|+.|+.+|+..
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555444 33333334444444455566666544
No 309
>PRK12705 hypothetical protein; Provisional
Probab=38.40 E-value=5.3e+02 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+.+.++.+-+.|..+++.+++..++....|.
T Consensus 103 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le 133 (508)
T PRK12705 103 LENQLEEREKALSARELELEELEKQLDNELY 133 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444333333333
No 310
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.99 E-value=1.3e+02 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
+..+.+...+..=+..|...+.+++.++++...++.-+++-
T Consensus 273 ~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 273 EETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 44455566666667778888888888888888888777653
No 311
>KOG1924|consensus
Probab=37.93 E-value=2e+02 Score=33.08 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=52.4
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccC----CCchhhhhhcccccccCc
Q psy14557 213 SDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQV----ENFKKNKHHTQLTLTEIKRLQ----PTTNTYESVGRMFIKTPH 284 (338)
Q Consensus 213 ~~~~deELqKaf~ELQ~KlieTQQQLq~V~~Qi----qqlErelR~aeLTlkELekLP----eDTkVYKSVGRMFVltdK 284 (338)
+.++-.+++|.++.+..++..+..-++....+- .-.+....-.+.+.++.++|. .=-+.|+++|.-|+-.++
T Consensus 892 Srvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~k 971 (1102)
T KOG1924|consen 892 SRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPK 971 (1102)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcc
Confidence 455677888988888887777777666655443 123344445566667766662 224789999999998887
Q ss_pred hHHHHH
Q psy14557 285 PEVVVN 290 (338)
Q Consensus 285 deI~ee 290 (338)
.--+++
T Consensus 972 kysmEE 977 (1102)
T KOG1924|consen 972 KYSMEE 977 (1102)
T ss_pred cCcHHH
Confidence 644444
No 312
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.83 E-value=1.3e+02 Score=22.59 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
..=+..++.++.++..|+..-..|.+++..+...+..+..
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677888888888888888888888888888877654
No 313
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=37.81 E-value=4.4e+02 Score=26.54 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ 256 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ae 256 (338)
..+....|-.+++..+.=||+.+.-++..++++++.+.
T Consensus 16 ~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~ 53 (355)
T PF09766_consen 16 KAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCL 53 (355)
T ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 44555666666677777778888888888888888664
No 314
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=37.65 E-value=41 Score=24.84 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=35.1
Q ss_pred hhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHh
Q psy14557 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55 (338)
Q Consensus 12 ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~ 55 (338)
.-...|..+||.+++++......+|.++-=..|..-.+|..+++
T Consensus 16 ~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 16 KRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 35678889999999999999999999983347777777777664
No 315
>KOG3215|consensus
Probab=37.65 E-value=3.9e+02 Score=25.90 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKK---NKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlEr---elR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
+.-.|+..+++..+..+..+.-|+...++ ++.++.-..+-++.-|+-..+-+-+|-. .+.+++|.+..+..
T Consensus 96 q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el------~keleel~~~~~s~ 169 (222)
T KOG3215|consen 96 QKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNEL------KKELEELDDLNNST 169 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHH------HHHHHHHHHHhhhh
Confidence 33445555555566666666666555444 4445555566666666655554444321 23445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ 320 (338)
+....--.++-+|+--...++|
T Consensus 170 ~~klelrRkqf~~lm~~~~elQ 191 (222)
T KOG3215|consen 170 ETKLELRRKQFKYLMVSTEELQ 191 (222)
T ss_pred HHHHHHHhhcchHHHhhHHHHH
Confidence 5555555556666655555555
No 316
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=37.61 E-value=3.8e+02 Score=27.36 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 237 KLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 237 QLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
+++.=...-+++++.+.+.+--..-|+.|-.+...++. ++--...--.+=+--|..++..+++++..++++.+-+++.|
T Consensus 127 ~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~-~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L 205 (323)
T PF08537_consen 127 LLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRH-NRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEITKKDL 205 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCc-ccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556678888888888888888888777666666 22222222224444455666666666666666666666666
Q ss_pred HHHHHH
Q psy14557 317 LKIARY 322 (338)
Q Consensus 317 eelQ~~ 322 (338)
+=+++.
T Consensus 206 ~faqek 211 (323)
T PF08537_consen 206 KFAQEK 211 (323)
T ss_pred HHHHHH
Confidence 555543
No 317
>KOG0946|consensus
Probab=37.56 E-value=4.5e+02 Score=30.32 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 309 KAIILVPALKIARYLVILI 327 (338)
Q Consensus 309 keyLEKqLeelQ~~LrElL 327 (338)
..-++.++...+.+++.++
T Consensus 808 l~~~q~e~~~~keq~~t~~ 826 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLL 826 (970)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 318
>KOG0994|consensus
Probab=37.31 E-value=1.7e+02 Score=34.97 Aligned_cols=6 Identities=67% Similarity=0.938 Sum_probs=3.1
Q ss_pred cCCccc
Q psy14557 30 EIKEED 35 (338)
Q Consensus 30 ~i~e~d 35 (338)
.|+++|
T Consensus 1292 ~ik~sd 1297 (1758)
T KOG0994|consen 1292 KIKESD 1297 (1758)
T ss_pred HhhccC
Confidence 455554
No 319
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=37.30 E-value=81 Score=25.98 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 252 KHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 252 lR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
+|..-++++|+..+-.... .+++..-++.+.+.++.+++.|+..++.|+..++
T Consensus 54 lr~~G~sl~~i~~l~~~~~-------------~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 54 LRDLGFPLEEIKEILDADN-------------DDELRKLLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHcCCCHHHHHHHHhcCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666643211 0667777777777777777777777776665543
No 320
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.00 E-value=1.2e+02 Score=27.95 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
..+|.++.+.++.++..|+++...+++.++.+-.
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554444
No 321
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.90 E-value=3.6e+02 Score=28.78 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=29.8
Q ss_pred chhhhhhcccccccCch---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 269 TNTYESVGRMFIKTPHP---EVVVNLEKKVKSYEEKIKDIESEKA 310 (338)
Q Consensus 269 TkVYKSVGRMFVltdKd---eI~eeLeEkieslEerIK~LEKQke 310 (338)
.++++.=++-|....+. .+++=|+++++..+.++..+++++.
T Consensus 120 ~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~ 164 (475)
T PRK10361 120 NRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEA 164 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777776654 4677788888888888888776643
No 322
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.77 E-value=2.8e+02 Score=27.52 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
++|.|.+.|||. +.+...+..+.-...++.+|+|+.-.+-+
T Consensus 126 eeLlkV~~ELqt----~mktYh~y~~e~~~ae~Klk~aE~q~ek~ 166 (263)
T cd07682 126 EDLMKVLNELYT----VMKTYHMYNADSISAQSKLKEAEKQEEKQ 166 (263)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666 66666777777778888888888665443
No 323
>KOG0243|consensus
Probab=36.68 E-value=4.1e+02 Score=31.09 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=6.4
Q ss_pred ccccceEEEeecC
Q psy14557 185 STNTTSTTIVSNN 197 (338)
Q Consensus 185 ~~~~~s~~~~s~~ 197 (338)
.|-|+=+..+|-.
T Consensus 358 kTKT~iIATiSPa 370 (1041)
T KOG0243|consen 358 KTKTCIIATISPA 370 (1041)
T ss_pred CceeEEEEEeCCC
Confidence 3455555555543
No 324
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.65 E-value=3.5e+02 Score=25.14 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKH 253 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR 253 (338)
++-+.+..+...+..++.+++....+...+++.++
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555554444444444444
No 325
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=36.61 E-value=2.4e+02 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=23.8
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 212 VSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 212 ~~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
+..+..|..+..+. .+.+++++.++.++++++-+.+++ .+|..+-
T Consensus 9 VK~ivTe~~K~~l~------~~l~~~i~~~d~el~QLefq~kr~---~~e~~~~ 53 (131)
T PF11068_consen 9 VKAIVTEKWKEELL------QELQEQIQQLDQELQQLEFQGKRM---IKEIKKQ 53 (131)
T ss_dssp EEEE--HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTT
T ss_pred EEEEECHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhc
Confidence 34444555554432 134456666777777777776654 3444443
No 326
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.49 E-value=3.9e+02 Score=25.57 Aligned_cols=25 Identities=4% Similarity=0.178 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 237 KLKIQDIQVENFKKNKHHTQLTLTE 261 (338)
Q Consensus 237 QLq~V~~QiqqlErelR~aeLTlkE 261 (338)
+++....++..++.++..++-....
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~ 160 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDR 160 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444433
No 327
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.34 E-value=12 Score=40.47 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhh
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYE 273 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYK 273 (338)
.++..+.+|+.++.....++.-....++.++.++...+-...||......+..||
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~Lr 297 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALR 297 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555444455555555666666666666666655544444443
No 328
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.33 E-value=95 Score=25.78 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 230 KMMDTKQKLKIQDIQVENFKKNKHHTQLTLT 260 (338)
Q Consensus 230 KlieTQQQLq~V~~QiqqlErelR~aeLTlk 260 (338)
++..+.+.+..+.-+++.+++.++..+|+.+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e 36 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPE 36 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChH
Confidence 3444667777777777777777777665543
No 329
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.31 E-value=82 Score=27.79 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhccCCCchhhhhhccc--c-cccCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 251 NKHHTQLTLTEIKRLQPTTNTYESVGRM--F-IKTPH-----PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 251 elR~aeLTlkELekLPeDTkVYKSVGRM--F-VltdK-----deI~eeLeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
.+..++.+++.|.. .+.-+.|..||. | +.++. ++-+.+|+.++..+.+++..|++....|+.++..+
T Consensus 31 ~K~~v~k~Ld~L~~--~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 31 GKTAVQKALDSLVE--EGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred cHHHHHHHHHHHHh--CCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777664 467778888885 2 22222 33455666666666666666666665555554433
No 330
>KOG0199|consensus
Probab=36.15 E-value=32 Score=38.83 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhHhhhhh-cCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 3 KAVDMELKKEHMSVFVL-NGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~-NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
|.|..+-|.+|.+-|+. ----....|..++++||.+||+.-|++|+. -.|+..+..
T Consensus 14 eLLr~aqL~qf~s~lr~~lnvrr~~hf~yVk~eDLl~IGMgRp~qRRL-rea~kkm~~ 70 (1039)
T KOG0199|consen 14 ELLRKAQLDQFISQLRFLLNVRRFDHFSYVKDEDLLEIGMGRPQQRRL-REAIKKMSR 70 (1039)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhhhcchhhhhhhccCcHHHHHH-HHHHHHhhh
Confidence 67788889999887653 123445566789999999999999999864 455555443
No 331
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=4.8e+02 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.+.+|..|+++...=.+..+++.+.|.++
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444334444444444433
No 332
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=36.14 E-value=76 Score=23.24 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 251 NKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIIL 313 (338)
Q Consensus 251 elR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLE 313 (338)
..|.+-+|++|+..+= .+|.. |. .+.+++..-+.++.+.++.+|+.|++-+..|+
T Consensus 9 ~~r~lGfsL~eI~~~l---~l~~~-~~----~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 9 RLRELGFSLEEIRELL---ELYDQ-GD----PPCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHTT--HHHHHHHH---HHCCS-HC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH---hccCC-CC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777776652 22222 21 24556666677777777777777766665554
No 333
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.02 E-value=31 Score=36.57 Aligned_cols=28 Identities=7% Similarity=0.293 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+++.|+.++++|++|.+.+++++++.++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 7777777777777777777777766655
No 334
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.65 E-value=3.6e+02 Score=24.92 Aligned_cols=7 Identities=0% Similarity=0.017 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy14557 312 ILVPALK 318 (338)
Q Consensus 312 LEKqLee 318 (338)
++..+..
T Consensus 138 l~~~l~~ 144 (302)
T PF10186_consen 138 LQSQLAR 144 (302)
T ss_pred HHHHHHH
Confidence 3333333
No 335
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=35.36 E-value=4.8e+02 Score=27.00 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
|.......+..+..++.+..-+++++.+++..+.++-
T Consensus 90 l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 90 LEGILKQQAKALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555555555555555555543
No 336
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.30 E-value=5.6e+02 Score=28.98 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
+++..|..+......+.-.+..+..|++.+..++++++..+.+|..
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~ 638 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQS 638 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555666777777777777777666654
No 337
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.21 E-value=1.7e+02 Score=24.64 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
--...+..|+++.+.+..+++.+++.......+++.+.++++
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345568888999999999999999999988888888877653
No 338
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=35.17 E-value=3.1e+02 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIE 306 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LE 306 (338)
..+++.++|+++++.-+..|..++
T Consensus 97 ~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 97 KYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 339
>KOG1937|consensus
Probab=35.08 E-value=6.1e+02 Score=27.38 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVEN 247 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~Qiqq 247 (338)
..|+.++..+++++-...+|.+-
T Consensus 296 aKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 296 AKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777763
No 340
>PRK04325 hypothetical protein; Provisional
Probab=34.87 E-value=1.7e+02 Score=23.17 Aligned_cols=37 Identities=3% Similarity=-0.026 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
-++.-++.+..-+-...++...|+++++.+.++|+++
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444555555554444443
No 341
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.86 E-value=1.7e+02 Score=25.33 Aligned_cols=19 Identities=5% Similarity=0.265 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 244 QVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 244 QiqqlErelR~aeLTlkEL 262 (338)
+...+++.+--......||
T Consensus 17 ~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 5555555555555566666
No 342
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.73 E-value=2.9e+02 Score=23.62 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+.....|.......+.+-+.|++...-++++++++..
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 343
>PRK02119 hypothetical protein; Provisional
Probab=34.65 E-value=2e+02 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
++++..+|.++.=.+...+.|.+.+-+.+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq 36 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQ 36 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 344
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=34.54 E-value=3.5e+02 Score=26.70 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE 261 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE 261 (338)
++|.|.+.|||. +.....+.-.+-...+..++.++.-.+-
T Consensus 127 eeLlkV~~EL~t----~mKtY~~y~~e~~~ae~Klk~ae~q~ek 166 (253)
T cd07683 127 EDLMKVLNELYT----VMKTYHMYHTESISAESKLKEAEKQEEK 166 (253)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666 4444444445666666666766654433
No 345
>PRK00106 hypothetical protein; Provisional
Probab=34.38 E-value=6.2e+02 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILV 314 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEK 314 (338)
|+++.+.++.+.+.|+.+++.|++
T Consensus 120 LekrE~eLe~kekeLe~reeeLee 143 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDE 143 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 346
>PHA02414 hypothetical protein
Probab=34.32 E-value=1.7e+02 Score=25.27 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 236 QKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 236 QQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKq 315 (338)
.+++.+..|++.++..+++-++|.+- ++ .+....+.+|.+-+-+++.++.--+.+..++-=|
T Consensus 4 ~~in~Lv~~v~~ledKiQ~Gelt~kg-----dn-------------~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQ 65 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQEGELTDKG-----DN-------------KELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQ 65 (111)
T ss_pred hHHHHHHHHHHHHHHHHhcCccccCC-----ch-------------HHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHH
Confidence 35677778888888888888887642 11 1233445666677777777666666666666666
Q ss_pred HHHHHHHHHHHHhcc
Q psy14557 316 ALKIARYLVILIRLN 330 (338)
Q Consensus 316 LeelQ~~LrElLr~~ 330 (338)
+..+++.|.++-.++
T Consensus 66 i~~Lee~i~aL~~~n 80 (111)
T PHA02414 66 IERLEEKISALAESN 80 (111)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666666666555444
No 347
>smart00338 BRLZ basic region leucin zipper.
Probab=34.29 E-value=1.6e+02 Score=22.10 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+..+..++.++..|+.+-..|..++..++.++..+-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888888888887777776553
No 348
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=34.17 E-value=4.2e+02 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHH 254 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~ 254 (338)
.+.++..++..+...-..+..++..+..++..
T Consensus 55 el~~lr~~id~~~~eka~l~~e~~~l~~e~~~ 86 (312)
T PF00038_consen 55 ELRELRRQIDDLSKEKARLELEIDNLKEELED 86 (312)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHH
Confidence 33344444444444444444444444433333
No 349
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.15 E-value=94 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+.+.+..=|.++.+.++++++.|+....+|+..+..++.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 76 PWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446667778888999999999999988888877766654
No 350
>KOG3501|consensus
Probab=33.93 E-value=3.3e+02 Score=23.90 Aligned_cols=105 Identities=7% Similarity=-0.015 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
+||-...+-|+++...--|+..+.-++...+-..++..-..+|=.-...=.++|----+.-|..-.++-++.++++++.+
T Consensus 7 ~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaL 86 (114)
T KOG3501|consen 7 QLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEAL 86 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHH
Confidence 67777788888888888888888888888888888888888777555444567766667777778888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
+....=||++-.-.|..+.++-...
T Consensus 87 qkkK~YlEk~v~eaE~nLrellqs~ 111 (114)
T KOG3501|consen 87 QKKKTYLEKTVSEAEQNLRELLQSR 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999888887777765543
No 351
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.92 E-value=93 Score=30.54 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=35.7
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 278 MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 278 MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+|+..+..-.+.+|++++..++.+|..|+. .+.++.+.+.....+++.
T Consensus 48 ~~~~~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~ 95 (262)
T COG1729 48 ERVQNAHSYRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEEN 95 (262)
T ss_pred ccccchhhhccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 377777778899999999999999999996 555555554444444444
No 352
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=33.92 E-value=38 Score=26.19 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=29.0
Q ss_pred ccccCCCceeeccCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy14557 201 INHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKL 238 (338)
Q Consensus 201 ~~~~~~~~s~~~~~~~deELqKaf~ELQ~KlieTQQQL 238 (338)
+++.|...+|...+...+.++++...+..++.+...+.
T Consensus 4 v~I~G~~y~i~~~~~~ee~l~~~a~~i~~~i~~~~~~~ 41 (89)
T PF05164_consen 4 VTILGREYRIKCPDEDEEYLRKAAELINEKINEIKKKY 41 (89)
T ss_dssp EEETTEEEEECETGCGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred EEECCEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666677677788899999999999888877653
No 353
>PTZ00464 SNF-7-like protein; Provisional
Probab=33.48 E-value=4.2e+02 Score=25.05 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=41.7
Q ss_pred HhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q psy14557 262 IKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIES--------EKAIILVPALKIARYL 323 (338)
Q Consensus 262 LekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEK--------QkeyLEKqLeelQ~~L 323 (338)
+..|-..+++-|.+-+-+=..+++.+++++.+..+..++=-..|.. -+.-|+..|++++.++
T Consensus 104 v~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 104 VDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3344445555666666666777888888888888877776666654 3456777777777654
No 354
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.23 E-value=1.9e+02 Score=29.77 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
++|.++.+.+.++++.++++.+.++.++.+..-.|
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45777888899999999999999998888765543
No 355
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=33.20 E-value=2.6e+02 Score=26.29 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIE 306 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LE 306 (338)
++.++..+..++-.+.+|+..++... .+..-+..|-.+.++-|.+-+.+=..+++.+++++.+.++..++=-..|.
T Consensus 79 ~E~ql~q~~~ql~nLEq~~~~iE~a~----~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs 154 (191)
T PTZ00446 79 YEQEIENILNNRLTLEDNMINLENMH----LHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALS 154 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred H------HHHHHHHHHHHHHHH
Q psy14557 307 S------EKAIILVPALKIARY 322 (338)
Q Consensus 307 K------QkeyLEKqLeelQ~~ 322 (338)
. -+.-|+..|++++.+
T Consensus 155 ~~~~~~~DEdELe~ELe~Le~e 176 (191)
T PTZ00446 155 FNLLNNVDDDEIDKELDLLKEQ 176 (191)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
No 356
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.08 E-value=2.5e+02 Score=30.26 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
++..+++..+.+.++..+....++-. +.++...+-..++|..
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHh
Confidence 45555555555555555544333331 4444555555555554
No 357
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.98 E-value=4.3e+02 Score=29.48 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
...++-+.+.+|+.+-.+.++....+...++.+++.+++.+.-.++|+.
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777788888777777777777777777777777776666666654
No 358
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=32.94 E-value=3.7e+02 Score=24.24 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
...++++++..+.+++.++++.+.|+++.++.+.+-...+.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~ 108 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALH 108 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 56677777777777777777777777777777665554443
No 359
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=32.87 E-value=4.1e+02 Score=24.71 Aligned_cols=49 Identities=4% Similarity=-0.000 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQP 267 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPe 267 (338)
+.+.-+.+|..++..+.+++..+..+...+-...-..-.+...|.+...
T Consensus 16 ~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~ 64 (224)
T cd07623 16 EKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEE 64 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5666677777877778888777777777777777777777778887653
No 360
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.82 E-value=84 Score=31.72 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
..|..++..++++|..++.....++..++..+..+..+.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~ 178 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLE 178 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677777777777777777777766666666655443
No 361
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=32.69 E-value=2.3e+02 Score=30.87 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
.+.+.+....++.++..|+.+....+.+...+|..++++-+++
T Consensus 373 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r 415 (656)
T PRK06975 373 TEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR 415 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 4456666677777777777777777777777777776665443
No 362
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=32.65 E-value=3.7e+02 Score=27.60 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCchhhhhh-----cccccccCchHHHHHHHHHHHHHH
Q psy14557 231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL------QPTTNTYESV-----GRMFIKTPHPEVVVNLEKKVKSYE 299 (338)
Q Consensus 231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELekL------PeDTkVYKSV-----GRMFVltdKdeI~eeLeEkieslE 299 (338)
+.+.|+|++.+.-.+..|+|++.++..+..-+..+ +++.+| .+| -|-|++ .-+..|.++....|
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkv-MPVKqWLEERR~lQ----gEmQ~LrDKLAiaE 135 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKV-MPVKQWLEERRFLQ----GEMQQLRDKLAIAE 135 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCcc-ccHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34567777777788889999999999998888776 222232 233 233433 33556666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 300 EKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
---+.=---++.|+.+|+-+++.|+.
T Consensus 136 RtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 136 RTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 43333333356678888888887764
No 363
>KOG0999|consensus
Probab=32.61 E-value=6.3e+02 Score=28.14 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----------------------HHHHhccCCCchhh
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKH----HTQLT----------------------LTEIKRLQPTTNTY 272 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR----~aeLT----------------------lkELekLPeDTkVY 272 (338)
.+.|.-.+|+.++..+..-|..-+-||..+..-++ -|+.+ ..||..|.+|+.+|
T Consensus 595 ~~dk~~e~l~~~ilklksllstkreqi~tlrtvlkankqtaevaltnlksKYEnEK~mvtetm~KlRnELk~Lkedaatf 674 (772)
T KOG0999|consen 595 AADKDKEALMEQILKLKSLLSTKREQITTLRTVLKANKQTAEVALTNLKSKYENEKAMVTETMDKLRNELKALKEDAATF 674 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555556655666655443333 33333 34788888999999
Q ss_pred hhhcccccccC--chHHHHHHHHHHHHHHHHHHHHH
Q psy14557 273 ESVGRMFIKTP--HPEVVVNLEKKVKSYEEKIKDIE 306 (338)
Q Consensus 273 KSVGRMFVltd--KdeI~eeLeEkieslEerIK~LE 306 (338)
-+.--||-..- .-.-++++..+...++++.|+|.
T Consensus 675 sslramf~~R~ee~~tq~de~~~ql~aaedekKtln 710 (772)
T KOG0999|consen 675 SSLRAMFAARCEEYVTQLDELQRQLAAAEDEKKTLN 710 (772)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99988886532 22234555556666666666554
No 364
>KOG0963|consensus
Probab=32.36 E-value=4.6e+02 Score=29.07 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=29.2
Q ss_pred ccccCchHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 279 FIKTPHPEVVVNLEKKVKS-----------YEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 279 FVltdKdeI~eeLeEkies-----------lEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
|++..++.++..|...++. ....|.+|+++.+.....++++.++|+
T Consensus 285 ~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 285 SVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455577777666655544 445667777777776666766666665
No 365
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=32.27 E-value=1.7e+02 Score=30.67 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc------hhhhhhcccccccC-------chHHHHHHHHHHHH
Q psy14557 231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTT------NTYESVGRMFIKTP-------HPEVVVNLEKKVKS 297 (338)
Q Consensus 231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDT------kVYKSVGRMFVltd-------KdeI~eeLeEkies 297 (338)
+.+=|+.|+.-.--+.-++..++.+.=|..-++.+-... .-.+.+.+.++..+ ++.|+.+...-.=.
T Consensus 287 V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL~PD 366 (424)
T PF03915_consen 287 VCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEARDQVLGEVRALQPD 366 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhHHHHHHHHHHhcCCC
Confidence 555666677666667777888888888777777663222 22233333444444 56777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLe 317 (338)
-+.|++++++.++--+|+++
T Consensus 367 HE~RLeAIerAEKlRqkele 386 (424)
T PF03915_consen 367 HESRLEAIERAEKLRQKELE 386 (424)
T ss_dssp --------------------
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988887777
No 366
>KOG0240|consensus
Probab=32.25 E-value=7.3e+02 Score=27.43 Aligned_cols=124 Identities=11% Similarity=0.005 Sum_probs=58.9
Q ss_pred ccccceEEEeecCcccccccCCCceeec----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 185 STNTTSTTIVSNNSSLINHKGDLISTEV----SDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLT 260 (338)
Q Consensus 185 ~~~~~s~~~~s~~~~~~~~~~~~~s~~~----~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlk 260 (338)
..|.-+++|+++.|.-.|+.-..-...| +.+.+..-.+.-..... ..+ ....++..+.+.+-+.+.-..
T Consensus 297 GGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~----~~r---~~e~~kd~~~~~~~~~~~~~~ 369 (607)
T KOG0240|consen 297 GGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEE----WKR---KLEKKKDKNVALKEELEKLRN 369 (607)
T ss_pred CCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHH----HHH---HHHHHHhHHHHHHHHHHHHHH
Confidence 3466677777888888888766555444 44444443333222222 222 222345555555555555555
Q ss_pred HHhcc------CCCchhhhhhcc-ccc-ccCchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 261 EIKRL------QPTTNTYESVGR-MFI-KTPHPEVVVNLE----KKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 261 ELekL------PeDTkVYKSVGR-MFV-ltdKdeI~eeLe----EkieslEerIK~LEKQkeyLEKq 315 (338)
+|... +.+-.+.-..+. |-+ +...+..++.+. +..+.+++++..|..|..-...+
T Consensus 370 sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~ 436 (607)
T KOG0240|consen 370 SLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQ 436 (607)
T ss_pred HHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 222222212221 111 112333333333 56666666666666655544333
No 367
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.20 E-value=4.7e+02 Score=27.58 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 300 EKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 300 erIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.+++.|+++.+.+++++.+.-..|.+
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666555554443
No 368
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.08 E-value=1.4e+02 Score=25.04 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR---YLVILIRL 329 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~---~LrElLr~ 329 (338)
..+++.+++.++.++++++.+.+.|+.+++.++. -|.++-|.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4566777777777777777777777777776654 34444443
No 369
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.96 E-value=1e+02 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEK 309 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQk 309 (338)
.+..+..|..+++.++..|..++++.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665543
No 370
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.93 E-value=1.4e+02 Score=31.76 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQD 242 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~ 242 (338)
+.++.|.|.+..+++++|..++
T Consensus 68 qSALteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 371
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=31.81 E-value=1.6e+02 Score=28.39 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
|.|...+..|+..+..++.+.+....|++.+++++..+....+||..
T Consensus 204 P~L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~ 250 (254)
T PF15458_consen 204 PSLSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQE 250 (254)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666667777777777777777777777777777654
No 372
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=31.79 E-value=1.4e+02 Score=25.77 Aligned_cols=61 Identities=28% Similarity=0.373 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 252 KHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 252 lR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+|..-.+++|+..+-... . + ..+.+++..-|+++++.++.+|+.|+..+..|+..+...+.
T Consensus 53 lr~~GfsL~eI~~ll~~~---~--~----~~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~ 113 (131)
T cd04786 53 AQQAGFSLDEIRQLLPAD---A--S----NWQHDELLAALERKVADIEALEARLAQNKAQLLVLIDLIES 113 (131)
T ss_pred HHHcCCCHHHHHHHHhcc---c--C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666653210 0 1 12346788889999999999999999998888777766553
No 373
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.70 E-value=2e+02 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=10.1
Q ss_pred cCchHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEK 301 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEer 301 (338)
..|++.+..|.+.-+.+...
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKK 27 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 34555665555544444433
No 374
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.69 E-value=2e+02 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=16.9
Q ss_pred EeeccccccccccCCCCCcccceeeccCCC
Q psy14557 124 FVFDIFPGICRTSNQNDGHKAGVLIQHPLP 153 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
.|++|||.-|.+. ..+.++|+|-+
T Consensus 4 il~~i~ppr~~~~------~~~~~~q~vS~ 27 (189)
T PF10211_consen 4 ILNSILPPREWEE------DGQLWIQFVSS 27 (189)
T ss_pred hHHhhCCchhhhc------CCeeeEeeeCC
Confidence 4788999988762 24567888754
No 375
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=31.62 E-value=3.7e+02 Score=23.88 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
.+--+|.||-..+..+..+......-.+.++..+....=+.+|+..+... +-.++.+..++|.+..+..
T Consensus 10 alG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e-----------ld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 10 ALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE-----------LDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh-----------cCCchhHHHHHHHHHHHHH
Confidence 45678889999899999998888888899999999999899998887421 2234467788888888887
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q psy14557 299 EEKIKDIESE-------KAIILVPALKIARYLVILIR 328 (338)
Q Consensus 299 EerIK~LEKQ-------keyLEKqLeelQ~~LrElLr 328 (338)
++=+.+.-+- +-++.++++++++.|+..++
T Consensus 79 ~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 79 KELVEKCSKVRRWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHhccccHHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 7777666552 23367888888888876654
No 376
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.57 E-value=6.5e+02 Score=29.04 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=35.6
Q ss_pred eeccCCCcHHHHHHHHHHHHHHHHHH----------HHHH-------HHHHH-------HHHHHHHHHHHHHHHHHHhcc
Q psy14557 210 TEVSDTVVTCGDKAFAELQIKMMDTK----------QKLK-------IQDIQ-------VENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 210 ~~~~~~~deELqKaf~ELQ~KlieTQ----------QQLq-------~V~~Q-------iqqlErelR~aeLTlkELekL 265 (338)
+.|.+|.-|-++.++.|+|..+.+++ +++. .++-| ...++.++++++.-.+-+.++
T Consensus 662 ~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si 741 (1104)
T COG4913 662 LNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSI 741 (1104)
T ss_pred cchhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56778877877777777776544322 1221 11111 124555677888888888888
Q ss_pred CCCc
Q psy14557 266 QPTT 269 (338)
Q Consensus 266 PeDT 269 (338)
|.+.
T Consensus 742 ~~~~ 745 (1104)
T COG4913 742 AKQG 745 (1104)
T ss_pred hhhh
Confidence 7553
No 377
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=31.45 E-value=1.3e+02 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKq 315 (338)
++...-|.++...++.+++.|++...+|++.
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 102 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIKTIDRT 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777777777777777654
No 378
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=31.00 E-value=1.1e+02 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
..++.+++.++++.+.++++++..++.+
T Consensus 196 ~~l~~~~~~~~~~i~~~~~rl~~~~~~l 223 (239)
T PF07195_consen 196 DSLNSQIKSLDKQIEDLEERLESKEERL 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 379
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=30.69 E-value=2.5e+02 Score=28.38 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=14.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKLK 239 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQLq 239 (338)
+.+.+++-.+.+.|.++...+.++.
T Consensus 118 ld~~~~~~~l~qaqa~l~~a~a~l~ 142 (415)
T PRK11556 118 IDPRPFKVALAQAQGQLAKDQATLA 142 (415)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665554444433
No 380
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=30.65 E-value=3.7e+02 Score=28.02 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhhhcCC
Q psy14557 47 RAKILAAVQVMHEYES 62 (338)
Q Consensus 47 R~rlL~Av~~L~~~~~ 62 (338)
|.|-|++|=.|.|...
T Consensus 112 r~rqlAvav~LID~~a 127 (391)
T smart00435 112 KVRQRATALYLIDKLA 127 (391)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 7777887777776444
No 381
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=30.46 E-value=4.8e+02 Score=25.46 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE 261 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE 261 (338)
||+.+-.=+-.-+..+..+....+++.+.+..+++|
T Consensus 47 eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 47 ELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433334444555666666666666666664444
No 382
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=30.35 E-value=8.7e+02 Score=28.31 Aligned_cols=105 Identities=9% Similarity=0.135 Sum_probs=56.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhcc--CCCchhhhhhccccc--
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQL-----------TLTEIKRL--QPTTNTYESVGRMFI-- 280 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeL-----------TlkELekL--PeDTkVYKSVGRMFV-- 280 (338)
-++.|+..+.+++.+--....|++...+|..++.+-+-..+- -..||..+ +.|... ..|+-+
T Consensus 985 LnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gA---eeRA~~RR 1061 (1480)
T COG3096 985 LNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGA---EERARIRR 1061 (1480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcch---HHHHHHHH
Confidence 456788888888887777777888877777776665433221 22334433 111111 111111
Q ss_pred ------ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 281 ------KTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 281 ------ltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
+.+--.-...+++....++.+.+.|.++...+++-+.+..+.+
T Consensus 1062 DELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~V 1110 (1480)
T COG3096 1062 DELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQV 1110 (1480)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111122334555566666666666666666666666555443
No 383
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=30.34 E-value=1e+02 Score=24.82 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNK 252 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErel 252 (338)
++.|.++.++-..+..+|..++.||-.+|..-
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~Y 32 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEKQIYDKETSY 32 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888777654
No 384
>KOG0992|consensus
Probab=30.33 E-value=4.7e+02 Score=28.61 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCA 334 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a 334 (338)
...|-+++..+...+..=.++.++|+..+..+.+.+++-.+.++|.+
T Consensus 476 ka~lierivrLQ~a~arknekiefLe~h~~qlveevQKktKiiQhy~ 522 (613)
T KOG0992|consen 476 KADLIERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKKTKIIQHYT 522 (613)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777888888888888888888888877754
No 385
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.27 E-value=3.9e+02 Score=23.70 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=15.3
Q ss_pred CchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKV---KSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 283 dKdeI~eeLeEki---eslEerIK~LEKQkeyLEKq 315 (338)
..++++.+....+ +.+...|+.++.+-+-++.+
T Consensus 139 ~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 139 GVPALLRDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466765554433 33344444444444444433
No 386
>PF13864 Enkurin: Calmodulin-binding
Probab=30.27 E-value=2.3e+02 Score=23.12 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKD---------IESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~---------LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.+..+++.|+.+-..+..+... ..+++..||++|.++++.|+.+
T Consensus 41 ER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 41 ERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888765 5677888999999888887754
No 387
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.16 E-value=2e+02 Score=25.01 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
+-..+++.|...+..++.++..++.+...|+.+-+++.++|-.++..++.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777777777766666666666655543
No 388
>KOG3684|consensus
Probab=30.06 E-value=2e+02 Score=30.73 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=43.3
Q ss_pred HHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 260 TEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 260 kELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
-|.-+|-++....=-++|++ .+.-+++.+|..+.+.++.+|..|+.+.+.|+..+..+-.=|+
T Consensus 410 ~~qRkl~e~~nsl~d~aK~~--~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~~~~ 472 (489)
T KOG3684|consen 410 WEQRKLSEQANSLVDLAKTQ--NDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLPGLLA 472 (489)
T ss_pred HHHHHHHhhcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhc
Confidence 34444445555555666664 4667888888888888888888888888887777765544333
No 389
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.05 E-value=1.5e+02 Score=24.61 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.+...+..|..-...||++-..+..+|+++|
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333333333333334444444444444444
No 390
>KOG1899|consensus
Probab=29.84 E-value=33 Score=37.88 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=50.2
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~ 62 (338)
.+|+-|||+||-..|-.|--| =.-+--|.-.||-+|-|...-|-.-|-.|++.|+..+-
T Consensus 630 RWLDDIGLPQYKdqF~E~rVD-grmL~ylTvnDll~lkVvs~lHhaSlkraIqvLr~n~f 688 (861)
T KOG1899|consen 630 RWLDDIGLPQYKDQFAENRVD-GRMLHYLTVNDLLELKVVSALHHASLKRAIQVLRKNDF 688 (861)
T ss_pred HHHHhcCChhhHHHHhhhccc-hhhHhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 478999999999999776544 45566888899999999999999999999999997544
No 391
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.80 E-value=1.7e+02 Score=27.59 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
..++.++.+.++.++..|+.+...++ .+++.-++|++++....+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~-~l~~en~~L~~lL~~~~~ 114 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELE-QLEAENARLRELLNLKES 114 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCccc
Confidence 45677888888888888888888775 555555778888876543
No 392
>KOG4687|consensus
Probab=29.76 E-value=6.2e+02 Score=25.85 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCCchhhhhhcc-cccc--cCchHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE----IKRLQPTTNTYESVGR-MFIK--TPHPEVVVNL 291 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE----LekLPeDTkVYKSVGR-MFVl--tdKdeI~eeL 291 (338)
+++|.|.-+|+|...-...+..+.+.+++.+.++.-..+..+- ++.+..+....-.+|- |.+. +.+.++...+
T Consensus 13 e~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i 92 (389)
T KOG4687|consen 13 ELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADI 92 (389)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHH
Confidence 8999999999999998888999888888888877655444333 3333333444444443 3322 2234444333
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 E---KKVKSYEEKIKDIESEKAIILV 314 (338)
Q Consensus 292 e---EkieslEerIK~LEKQkeyLEK 314 (338)
+ ++--.+..+...|--|+.-|-+
T Consensus 93 ~etkeeNlkLrTd~eaL~dq~adLhg 118 (389)
T KOG4687|consen 93 EETKEENLKLRTDREALLDQKADLHG 118 (389)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHhc
Confidence 3 3333444555555555555543
No 393
>PF15556 Zwint: ZW10 interactor
Probab=29.72 E-value=5.4e+02 Score=25.13 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
..++..+++++......++..|......|+.+...-+++|+
T Consensus 139 Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQ 179 (252)
T PF15556_consen 139 LAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQ 179 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666655556555555555554
No 394
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=29.66 E-value=3.9e+02 Score=26.18 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVEN 247 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~Qiqq 247 (338)
+..+.+++.++...+.+++....+.+.
T Consensus 105 ~a~l~~~~~~l~~a~~~l~~a~~~~~r 131 (370)
T PRK11578 105 EATLMELRAQRQQAEAELKLARVTLSR 131 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555444433
No 395
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=29.65 E-value=2.2e+02 Score=28.78 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=25.0
Q ss_pred ccccCchHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 279 FIKTPHPEVVVNL--------EKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 279 FVltdKdeI~eeL--------eEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
-++..-++++++. ..++..+-.+|..|+++...|++++.++++
T Consensus 267 ~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 267 RLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444455555544 345566666666666666666666665544
No 396
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=29.58 E-value=3.8e+02 Score=23.27 Aligned_cols=97 Identities=5% Similarity=0.015 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------chhhhhhcccccccCch
Q psy14557 214 DTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPT--------TNTYESVGRMFIKTPHP 285 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeD--------TkVYKSVGRMFVltdKd 285 (338)
.+.+|.++..|.+++.+-...-..|+ --..++..-|++ .++|-.|-.+|--.+..
T Consensus 25 ~v~~~~lk~~f~~~~~~~~~~~~eL~-----------------~~v~~lGg~p~~~gs~~g~lhr~w~~lks~~~~~~d~ 87 (139)
T TIGR02284 25 EVKDPELATLFRRIAGEKSAIVSELQ-----------------QVVASLGGKPEDHGSMVGSLHQFWGKIRATLTPNDDY 87 (139)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHcCCChH
Confidence 44678888888877763222222222 223445555655 34555555667667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEK-------AIILVPALKIARYLVILI 327 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQk-------eyLEKqLeelQ~~LrElL 327 (338)
.|+++++.-.+.+-+..+..=+.. .-|++++...+..+-.+-
T Consensus 88 aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~ 136 (139)
T TIGR02284 88 VVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIR 136 (139)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877766666655544433 557777777776665543
No 397
>KOG0239|consensus
Probab=29.50 E-value=3.3e+02 Score=30.14 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 233 DTKQKLKIQDIQVENFKKNKHHTQLTL 259 (338)
Q Consensus 233 eTQQQLq~V~~QiqqlErelR~aeLTl 259 (338)
...++++.+.++++.++...+.+.-..
T Consensus 238 ~~~~~i~~l~~~l~~l~~~~~~l~~~~ 264 (670)
T KOG0239|consen 238 TIKKKIQALQQELEELKAELKELNDQV 264 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333333
No 398
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=29.43 E-value=4.8e+02 Score=24.45 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=39.7
Q ss_pred hcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 275 VGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 275 VGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.|-.|-+.|-..+-..+..++..+..-+......-..+.+.++.....|+-+
T Consensus 66 ~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L 117 (296)
T PF13949_consen 66 YGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELL 117 (296)
T ss_dssp STTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3666777788888888888888888888888887778888888877776543
No 399
>KOG0962|consensus
Probab=29.31 E-value=5.8e+02 Score=30.64 Aligned_cols=115 Identities=10% Similarity=0.176 Sum_probs=80.2
Q ss_pred cccCCCceeeccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-cCCCchhhhhhcccc
Q psy14557 202 NHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLT-EIKR-LQPTTNTYESVGRMF 279 (338)
Q Consensus 202 ~~~~~~~s~~~~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlk-ELek-LPeDTkVYKSVGRMF 279 (338)
+++|..++|+... +..+++.|.-++.....+++.+.++....+.+++.+..+....+ .... +..-+...+++-.-|
T Consensus 556 ~~~~~~~~~~~~~--~~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~ 633 (1294)
T KOG0962|consen 556 DEKGRAIEFPLTN--DRSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTI 633 (1294)
T ss_pred hhhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccch
Confidence 4556666664421 26899999999999999999999999999999998888777666 2221 111233333332222
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 280 IKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 280 VltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
.+..+.++.|+.+++........|.......++-++...
T Consensus 634 --~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~ 672 (1294)
T KOG0962|consen 634 --DEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIAC 672 (1294)
T ss_pred --hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 367788888888888888888888888887777666543
No 400
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.29 E-value=2.9e+02 Score=27.00 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=58.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki 295 (338)
+-+.++..+..|+.++.+.+..+..+.+++..-+.++.........-..-+ ... .... =.....++.+..=++++
T Consensus 174 P~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~--~~~-~~~~--~~~~~~de~I~rEeeEI 248 (259)
T PF08657_consen 174 PLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD--EES-EESS--EDSVDTDEDIRREEEEI 248 (259)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--ccc-cccc--ccchhHHHHHHHHHHHH
Confidence 456889999999999999999999888888888888877766555443321 001 0000 01224566777777788
Q ss_pred HHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIE 306 (338)
Q Consensus 296 eslEerIK~LE 306 (338)
..+|.++..|+
T Consensus 249 reLE~k~~~Lq 259 (259)
T PF08657_consen 249 RELERKKRELQ 259 (259)
T ss_pred HHHHHHHHhcC
Confidence 88888887764
No 401
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.18 E-value=2.2e+02 Score=25.85 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
...++..++..+..+++.|+.+...+.++|.+.+..|..++
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888888888888888888888777
No 402
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.16 E-value=2.5e+02 Score=21.74 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
-+++.++.+..-+-...++...|+++++.+.+.|+++
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444555555555555555554443
No 403
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=28.98 E-value=1.2e+02 Score=22.66 Aligned_cols=33 Identities=6% Similarity=-0.149 Sum_probs=28.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 213 SDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQV 245 (338)
Q Consensus 213 ~~~~deELqKaf~ELQ~KlieTQQQLq~V~~Qi 245 (338)
.-.++|+|++.|..+..+.++.+.++-....|+
T Consensus 25 ~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 25 LECANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445889999999999999999999998887765
No 404
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=28.53 E-value=1.9e+02 Score=26.98 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
....+.|+.+++.++.+|+.++.+.+..+.++...=..+..+|
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i 234 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLI 234 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777666665555555544444444
No 405
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.43 E-value=8.1e+02 Score=26.80 Aligned_cols=32 Identities=9% Similarity=0.268 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKK 250 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlEr 250 (338)
+..++..-|+.++.++++++..++.+++.+++
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554443
No 406
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=28.37 E-value=4.4e+02 Score=23.70 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLee 318 (338)
..+.+.|..+++.|+-.++.
T Consensus 133 ~~~Lk~L~~kKerL~y~ver 152 (153)
T PF08287_consen 133 LERLKALRQKKERLKYSVER 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888777653
No 407
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.35 E-value=4.8e+02 Score=24.14 Aligned_cols=12 Identities=0% Similarity=0.075 Sum_probs=4.8
Q ss_pred cccCchHHHHHH
Q psy14557 280 IKTPHPEVVVNL 291 (338)
Q Consensus 280 VltdKdeI~eeL 291 (338)
+....+++-.+.
T Consensus 79 l~~G~EdLAr~A 90 (219)
T TIGR02977 79 LSKGREDLARAA 90 (219)
T ss_pred HHCCCHHHHHHH
Confidence 333344444433
No 408
>KOG0979|consensus
Probab=28.24 E-value=5.5e+02 Score=30.14 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------c------CCCchhhhhhcccccccCchHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR------L------QPTTNTYESVGRMFIKTPHPEVVV 289 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek------L------PeDTkVYKSVGRMFVltdKdeI~e 289 (338)
+.-.|+|.+.......+..+....+.++..++.+....++..+ + +.....|++.-.|++..+.+.-++
T Consensus 759 ~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~ 838 (1072)
T KOG0979|consen 759 KNNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMD 838 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHH
Confidence 3334566666666666666666777777777766666655543 1 234456666556666665555555
Q ss_pred HHHHHH
Q psy14557 290 NLEKKV 295 (338)
Q Consensus 290 eLeEki 295 (338)
+|+..+
T Consensus 839 eld~~I 844 (1072)
T KOG0979|consen 839 ELDQAI 844 (1072)
T ss_pred HHHHHH
Confidence 544433
No 409
>PF15456 Uds1: Up-regulated During Septation
Probab=27.93 E-value=1.5e+02 Score=25.95 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
-+++|+++...++.+++.+.++-. |+.++.++-..|-.+.
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~ 62 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLY 62 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 356777777777777777777776 6677666666655554
No 410
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=27.78 E-value=3.5e+02 Score=22.37 Aligned_cols=34 Identities=6% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTL 259 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTl 259 (338)
+....+...++.+.....++.++...+....-..
T Consensus 17 ~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~ 50 (141)
T TIGR02473 17 QAKLELAKAQAEFERLETQLQQLIKYREEYEQQA 50 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555544333
No 411
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.56 E-value=3.1e+02 Score=21.66 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKI 302 (338)
Q Consensus 286 eI~eeLeEkieslEerI 302 (338)
.++.-|+++.+.+-.++
T Consensus 50 ~l~~~L~~~e~~ll~~l 66 (127)
T smart00502 50 ELRNALNKRKKQLLEDL 66 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333443333333333
No 412
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=27.55 E-value=4.2e+02 Score=23.16 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
++-.++++.++++.+..++++...-++.+++-+.|+++++.+
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777777777777777777777777777665
No 413
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=27.49 E-value=71 Score=26.47 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=20.8
Q ss_pred hhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 274 SVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 274 SVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
++|+.|+..+......... ....+.++..|++-.+...++++.+.+.++
T Consensus 11 a~G~~~~~~~~~~~~~~~~--~~~~~~E~~rl~~Al~~~~~eL~~l~~~~~ 59 (123)
T PF05524_consen 11 AIGPAFVLRPPEPEIPERH--IDDIEAEIERLEQALEKAREELEQLAERAE 59 (123)
T ss_dssp EEEEEEE---------TTB---SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecccCcccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888876552222111 144455555555555555555555555444
No 414
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.32 E-value=7e+02 Score=28.62 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHH 254 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ 254 (338)
.-|+-=|++.|+..-.+++++|+++.+|+...++..|.
T Consensus 382 q~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~ 419 (861)
T PF15254_consen 382 QVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKT 419 (861)
T ss_pred hhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 34677788899998888999999988888777766643
No 415
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.28 E-value=2.1e+02 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
..+|+.+|..++-+.+.++.-++.|-+.++-++-.|+.
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776666666666666666666653
No 416
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.27 E-value=2.5e+02 Score=24.48 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
...+.++++.++.+++.|+.+...|++-.+.+....+..|
T Consensus 76 ~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~ 115 (134)
T cd04779 76 QREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKM 115 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777777777766555544
No 417
>KOG0612|consensus
Probab=27.22 E-value=1.2e+03 Score=28.25 Aligned_cols=148 Identities=18% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCcceeecccCCCccc-cccccCCCCCCCCcCcccccceEEEeecCcccccccCCCceeeccCCCcHHHHHHHHHHHHH
Q psy14557 152 LPLYPITLACDSSFSGK-HARNNLDSEHSTDDTRSTNTTSTTIVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQIK 230 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~s~~~~~~~deELqKaf~ELQ~K 230 (338)
||..-.|..|-+.|+.. -..+-..+.-...+.-| +-....+..+.-.-..-..-.+++.+--+-
T Consensus 395 LPFIGfTy~~~~~~ss~~~~~~~~~~~~~~~~~~~---------------~e~~~~~~~le~~l~~~~~~~~~~~~~~~~ 459 (1317)
T KOG0612|consen 395 LPFIGFTYTHESLLSSSTPLKNEKEANAERSDVDS---------------QEIHKTLQILEQSLVNEMQEKEKLDEKCQA 459 (1317)
T ss_pred CCeeeeeeccchhhccCCcccchhhccccccchhh---------------hccccchhhcccchhhHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKA 310 (338)
Q Consensus 231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQke 310 (338)
..+..+..+.++..+..++.+..+++. ++..-+....+.| .+.+.+.+++.+.++.++..++.+.+
T Consensus 460 ~~~~~~~~keL~e~i~~lk~~~~el~~--~q~~l~q~~~ke~------------~ek~~~~~~~~~~l~~~~~~~~eele 525 (1317)
T KOG0612|consen 460 VAELEEMDKELEETIEKLKSEESELQR--EQKALLQHEQKEV------------EEKLSEEEAKKRKLEALVRQLEEELE 525 (1317)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14557 311 IILVPALKIARYLVILIR 328 (338)
Q Consensus 311 yLEKqLeelQ~~LrElLr 328 (338)
-+++.....+.+.+++..
T Consensus 526 ~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 526 DAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHhhHHH
No 418
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=27.20 E-value=2.4e+02 Score=23.77 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 252 KHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 252 lR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
++.+-++++|+..+=+ .|.. .+.+.+..-|+++.+.++.+|+.|+..+..|+..+.
T Consensus 52 l~~~G~sl~eI~~~l~---~~~~-------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 52 AQELGFSLEEIGGLLG---LVDG-------THCREMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred HHHCCCCHHHHHHHHh---cccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777766521 1111 334667778888888888888888877777765544
No 419
>KOG1003|consensus
Probab=27.13 E-value=5.7e+02 Score=24.58 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=29.0
Q ss_pred chhhhhhccccccc--Cch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 269 TNTYESVGRMFIKT--PHP----------EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 269 TkVYKSVGRMFVlt--dKd----------eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.+-|.-|-|.++.. +.+ .-..+|.+.........+.|+++.+.+..+.......|+.
T Consensus 80 drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ 148 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKE 148 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34788888854432 211 1224455555555555555555555555544444444443
No 420
>KOG4603|consensus
Probab=27.07 E-value=5.5e+02 Score=24.41 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=17.6
Q ss_pred CCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 215 TVVTCGDKAFA---ELQIKMMDTKQKLKIQDIQVENFK 249 (338)
Q Consensus 215 ~~deELqKaf~---ELQ~KlieTQQQLq~V~~QiqqlE 249 (338)
++|+++++.=. .|+.|++.+++...-+++.|..+.
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677776544 344444444444444444444433
No 421
>KOG4302|consensus
Probab=27.06 E-value=6.1e+02 Score=28.28 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCceeeccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCchhhhhhccccccc
Q psy14557 206 DLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL---QPTTNTYESVGRMFIKT 282 (338)
Q Consensus 206 ~~~s~~~~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL---PeDTkVYKSVGRMFVlt 282 (338)
+.++|+..|-.|.-+ .++.+.+.+|+.+..++...-.......-+.+.|-++ +....+ ..|-+-.+..
T Consensus 145 ~~~~~~~~D~~dlsl--------~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~v-t~~~~sL~~~ 215 (660)
T KOG4302|consen 145 DLPSFLIADESDLSL--------EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTV-TDVEPSLVDH 215 (660)
T ss_pred cCCcccccCcccccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhhhhhc
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+-..-..=..+.++.+..-+++|+.++.....+++.+..++.++
T Consensus 216 ~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~L 259 (660)
T KOG4302|consen 216 DGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLEL 259 (660)
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 422
>PRK06798 fliD flagellar capping protein; Validated
Probab=27.05 E-value=93 Score=32.19 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
.+.+.++.+|+.++++.+.++.+++..++.++
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~ 410 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNKQKQDNIV 410 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777666666666666555544
No 423
>KOG2896|consensus
Probab=27.02 E-value=7.4e+02 Score=25.86 Aligned_cols=53 Identities=8% Similarity=0.112 Sum_probs=34.2
Q ss_pred hhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 270 NTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 270 kVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
++=+++|++ ....+.++..|+++-..++....++.++++.|.+-..++.....
T Consensus 124 ~~~Ealsk~--~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re 176 (377)
T KOG2896|consen 124 RQIEALSKK--RAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRE 176 (377)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344556665 44566667777777777777777777777766665555554444
No 424
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=26.96 E-value=1.1e+02 Score=31.56 Aligned_cols=31 Identities=3% Similarity=-0.027 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+.+.++.+|+.|+++.+.++.+++..++.++
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777777777777777665
No 425
>KOG3678|consensus
Probab=26.90 E-value=49 Score=35.87 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=45.1
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCccccc-ccCCCChHHHHHHHHHHhhhhh
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLN-YLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~-elgI~dp~hR~rlL~Av~~L~~ 59 (338)
-+|..||.++|.++|--.--| =+.+-++.|.||. ++|+..--||+|.|.-.+.|.-
T Consensus 472 ~WvkkIGFeeY~EkFakQ~VD-GDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv 528 (832)
T KOG3678|consen 472 YWVKKIGFEEYVEKFAKQMVD-GDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKV 528 (832)
T ss_pred HHHHHhCHHHHHHHHHHHhcc-chHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 367889999999999765433 3445589999985 7999999999999998888764
No 426
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.85 E-value=2.9e+02 Score=21.77 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
++-++.+.+-+-...++...|+++++.+.++|++
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444444
No 427
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=26.81 E-value=5.5e+02 Score=24.32 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki 295 (338)
+.+.|+|...++..++...+|+++.+..-.. ...+.+-+||..+ ......+.
T Consensus 112 NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe------ekL~~ANeei~~v----------------------~~~~~~e~ 163 (207)
T PF05010_consen 112 NEETLKKCIEEYEERLKKEEQRYQALKAHAE------EKLEKANEEIAQV----------------------RSKHQAEL 163 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----------------------HHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
..+...+++.+-+...|+++++.-..+..++.+
T Consensus 164 ~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 164 LALQASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>PRK00846 hypothetical protein; Provisional
Probab=26.81 E-value=3.2e+02 Score=22.25 Aligned_cols=15 Identities=7% Similarity=-0.241 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy14557 312 ILVPALKIARYLVIL 326 (338)
Q Consensus 312 LEKqLeelQ~~LrEl 326 (338)
|+++++-+.++|+++
T Consensus 46 L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 46 NAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 429
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.80 E-value=3e+02 Score=28.96 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 244 QVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 244 QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
.+-.+..+.|......++|... --++=+.||+...+..+ ....+..+++.+..+.+.++.++.+.+.++
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~--rn~~sk~ig~~~~~~~~---------~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l 98 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAE--RNELSKEIGRALKRGED---------DAEELIAEVKELKEKLKELEAALDELEAEL 98 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccch---------hHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444444444444444444433 12334455543333222 233444455555555566666666666666
Q ss_pred HHHHhccC
Q psy14557 324 VILIRLNT 331 (338)
Q Consensus 324 rElLr~~~ 331 (338)
.+++-++.
T Consensus 99 ~~~ll~ip 106 (429)
T COG0172 99 DTLLLTIP 106 (429)
T ss_pred HHHHHhCC
Confidence 66665544
No 430
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.68 E-value=6.9e+02 Score=25.42 Aligned_cols=74 Identities=7% Similarity=0.096 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 235 KQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILV 314 (338)
Q Consensus 235 QQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEK 314 (338)
.....-+..|+..++.++..++-.+.+...=. .++-+-+. ....+-+.+++++...++.++..++.+...|++
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~---~~~~~~~~----~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN---GGILPDQE----GDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cccCccch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777776666666665553211 11100000 011233456666666666666666666665554
Q ss_pred H
Q psy14557 315 P 315 (338)
Q Consensus 315 q 315 (338)
+
T Consensus 233 ~ 233 (498)
T TIGR03007 233 Q 233 (498)
T ss_pred H
Confidence 3
No 431
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=26.65 E-value=5.2e+02 Score=23.96 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----------HhccCCCchhhhhhcccccccC
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKN----KHHTQLTLTE----------IKRLQPTTNTYESVGRMFIKTP 283 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlEre----lR~aeLTlkE----------LekLPeDTkVYKSVGRMFVltd 283 (338)
++.++...+|..+.......+..+...+..+... .+.+.-++.+ ...-|+...+-+.|..+|.+..
T Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~p~y~~Mi~~L~~qvk 121 (177)
T PF03234_consen 42 EERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEADKQEVMESLNEPFDKKEKPGVENKDPEQPTYDEMIEDLLDQVK 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhcccccccccccccCCCCCCCHHHHHHHHHHHHh
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 -------HPEVVVNLEKKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 284 -------KdeI~eeLeEkieslEerIK~LEKQkeyLEKq 315 (338)
...+++.|....+.+....+.++++.+.|+++
T Consensus 122 ~~~de~~~~~~~~~l~~H~~kl~~~~ke~~~kLeeLekE 160 (177)
T PF03234_consen 122 KEPDEKSGKAELEELQEHRAKLEKEQKELKKKLEELEKE 160 (177)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>KOG0933|consensus
Probab=26.61 E-value=7.6e+02 Score=29.22 Aligned_cols=27 Identities=33% Similarity=0.189 Sum_probs=14.2
Q ss_pred CcccceeeccCCCC-------cceeecccCCCcc
Q psy14557 141 GHKAGVLIQHPLPL-------YPITLACDSSFSG 167 (338)
Q Consensus 141 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 167 (338)
++.|=-||-.|=-+ |--||.||+-=..
T Consensus 601 v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~A 634 (1174)
T KOG0933|consen 601 VELALSLIGYDDELKKAMEFVFGSTLVCDSLDVA 634 (1174)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHH
Confidence 44554555554332 3357788875433
No 433
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.43 E-value=2.6e+02 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEK 309 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQk 309 (338)
++....+|+++++.++.+|..||+-.
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~le~~~ 143 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRLEEIQ 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766666666665543
No 434
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.06 E-value=5.4e+02 Score=23.96 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=29.5
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 212 VSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKK 250 (338)
Q Consensus 212 ~~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlEr 250 (338)
+...+-++|.+.+.+.+.++.+.+.+++....++.....
T Consensus 75 ~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~ 113 (240)
T PF12795_consen 75 LANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQT 113 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566889999988888888888888887777764443
No 435
>PRK00295 hypothetical protein; Provisional
Probab=26.03 E-value=2.9e+02 Score=21.56 Aligned_cols=38 Identities=0% Similarity=0.031 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.-+++-++.+..-+-...++...|+++++.+.++|+++
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555666555555554
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.03 E-value=9.6e+02 Score=26.84 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 234 TKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 234 TQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
...-+..+..++..++..+.+++...+|++.+
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~ 544 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKL 544 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 437
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.02 E-value=3.3e+02 Score=29.59 Aligned_cols=48 Identities=25% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhccC
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVEN-----------FKKNKHHTQLTLTEIKRLQ 266 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~Qiqq-----------lErelR~aeLTlkELekLP 266 (338)
++-.+..+|..|...++.-..+..+-..+ +++-.-++++-.+||..|.
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666554443332222 3333445666777777663
No 438
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.93 E-value=1.8e+02 Score=28.59 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
-.+++..|.+||.++.+++. ++.+..|.++......+.+...+.++.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~ 104 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLES 104 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 45888999999999888887 777777776655555565555555543
No 439
>KOG0979|consensus
Probab=25.82 E-value=4.9e+02 Score=30.51 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 238 LKIQDIQVENFKKNKHHTQLTLTEIKRL-QPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 238 Lq~V~~QiqqlErelR~aeLTlkELekL-PeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
...++.++..++.+.+-+.-..+||++. .+...-|..+-+.|-... .=..+.-++.+..+.++..+.++.+++.++.
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~--~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEAL--AKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555556666666664 223334444443332211 1122233344445555555555555655555
Q ss_pred HHHHHHHHHHH
Q psy14557 317 LKIARYLVILI 327 (338)
Q Consensus 317 eelQ~~LrElL 327 (338)
+..|..|....
T Consensus 335 ~~rq~~i~~~~ 345 (1072)
T KOG0979|consen 335 EKRQKRIEKAK 345 (1072)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 440
>KOG4571|consensus
Probab=25.77 E-value=1.9e+02 Score=29.15 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=25.6
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHh-h-cCCcccccccC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESF-C-EIKEEDLNYLK 40 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~-~-~i~e~dL~elg 40 (338)
-+-++++||....+..++-||.-|=+- + .=++.+|.-.+
T Consensus 2 m~~~~~~~l~~~~sl~l~~~~~~v~~~~k~~~~~~~~~k~~ 42 (294)
T KOG4571|consen 2 MSPFDALGLELEESLGLLSDYGEVVKHFKPHGEPCDLAKAA 42 (294)
T ss_pred CCchhhhhHHHHHhcccccccchhhhcccCCCCCCCccccc
Confidence 345688899999999998888766433 3 33344454443
No 441
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=25.56 E-value=23 Score=37.09 Aligned_cols=61 Identities=18% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCC----chhhhhhccc--ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 251 NKHHTQLTLTEIKRLQPT----TNTYESVGRM--FIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAI 311 (338)
Q Consensus 251 elR~aeLTlkELekLPeD----TkVYKSVGRM--FVltdKdeI~eeLeEkieslEerIK~LEKQkey 311 (338)
..+..+++.+||++|-.. ++..-++||+ ||+.|.+.+..+|.-=......-...|...+..
T Consensus 426 ~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~ 492 (539)
T PF10243_consen 426 SKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSI 492 (539)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777777433 6677789996 899999999988876555555555555544443
No 442
>KOG0993|consensus
Probab=25.10 E-value=8.8e+02 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 306 ESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 306 EKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
+|+.+.|.+++.+.++.|.|+-+..-|
T Consensus 161 ekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 161 EKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 444444444444444444444433333
No 443
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=25.06 E-value=3.1e+02 Score=24.67 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLee 318 (338)
.+..-|.++.+.++.+|+.|+..+..|...+..
T Consensus 74 ~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~ 106 (172)
T cd04790 74 DATDVLRRRLAELNREIQRLRQQQRAIATLLKQ 106 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999998887754
No 444
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=25.02 E-value=8e+02 Score=26.79 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki 295 (338)
.+|+....+.+|++++--....++.+..-++.+.+. ++ +.-++-| ..++++....+++.+
T Consensus 404 ~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~---------~i----------~~~~~~l-~~dk~~~~~~vnn~k 463 (543)
T COG1315 404 MDPEIVERLKELTEEISLHEERLKKLTKLLVALVKV---------KI----------ESKKNIL-PPDKESLLTAVNNTK 463 (543)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH----------HhhcCCC-CCCcHHHHHhhhhhh
Confidence 688888888888886666666655554444444332 11 1112222 235667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeel 319 (338)
-+++..|++.+.+++.|+..++..
T Consensus 464 i~l~~~ieki~~~l~~lqe~le~~ 487 (543)
T COG1315 464 ITLRNSIEKIKAELEGLQEELEVV 487 (543)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777777777776666543
No 445
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.96 E-value=1.9e+02 Score=23.37 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
...-+.+|+++++.++.++..++.+.+-++.+++
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666665555544
No 446
>KOG0978|consensus
Probab=24.92 E-value=8.6e+02 Score=27.34 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=36.2
Q ss_pred hhhcccccccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 273 ESVGRMFIKTPH-PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 273 KSVGRMFVltdK-deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+++-..++..++ ...++++..........++.+..+..+|+..++.+-+.|..+
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444443 345677777777777777777778788888888777777654
No 447
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.82 E-value=4.5e+02 Score=26.97 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+.+.++++.|.++.+.++++++++++++.+++..+.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5677888899999999999999999999998886654
No 448
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.81 E-value=8e+02 Score=26.34 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
.++.++.+.+..++..++.+...|+++|+..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777777777788888888888777543
No 449
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=24.75 E-value=8.7e+02 Score=26.08 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=10.1
Q ss_pred eEEEeecCccccccc
Q psy14557 190 STTIVSNNSSLINHK 204 (338)
Q Consensus 190 s~~~~s~~~~~~~~~ 204 (338)
+.++||-...++...
T Consensus 479 tvi~vSHd~~~~~~~ 493 (638)
T PRK10636 479 ALVVVSHDRHLLRST 493 (638)
T ss_pred eEEEEeCCHHHHHHh
Confidence 677888777666543
No 450
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=24.70 E-value=3.6e+02 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=13.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESE 308 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQ 308 (338)
....+..+.....+.+..+++.|++.
T Consensus 47 ~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 47 KLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555543
No 451
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.57 E-value=3.3e+02 Score=21.05 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
.|++.++-...-.+..++.|.+.+...+...+-+.+.|-.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555666666666666666666666655544
No 452
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.46 E-value=4.7e+02 Score=22.73 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQK 237 (338)
Q Consensus 226 ELQ~KlieTQQQ 237 (338)
+||.++.++.++
T Consensus 62 eLqaki~ea~~~ 73 (107)
T PF09304_consen 62 ELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 453
>PF13166 AAA_13: AAA domain
Probab=24.28 E-value=8.8e+02 Score=25.80 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
.+++..+..++..++.++.....+++++.+++.++.
T Consensus 420 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 420 KELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555544
No 454
>PRK11519 tyrosine kinase; Provisional
Probab=24.22 E-value=9.6e+02 Score=26.22 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENF 248 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~Qiqql 248 (338)
++..=|+.++.+.+++|...+..++.+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444444433
No 455
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=24.11 E-value=1.8e+02 Score=24.17 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKH 253 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR 253 (338)
+.+|++++..+.+++....-++.+++..++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 456
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.09 E-value=7.6e+02 Score=24.98 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhccC-CCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ-------LTLTEIKRLQ-PTTNTYESVGRMFIKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~ae-------LTlkELekLP-eDTkVYKSVGRMFVltdKdeI~eeLeEkies 297 (338)
.|..+...+.+++.....++.++..++..-. -..++-..-. ..+++=. ...+.-..+..-.+.|.+|++.
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~--~~~~~~~~~~~~le~Lq~Klk~ 171 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRR--NESSLSSQKCIQLEALQEKLKS 171 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccc--cccccccccchhHHHHHHHHHH
Confidence 4455555566666666666666655554321 1111111110 1111101 1122233455667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
++++-..|...-..|.+.-...+++=+
T Consensus 172 LEeEN~~LR~Ea~~L~~et~~~EekEq 198 (306)
T PF04849_consen 172 LEEENEQLRSEASQLKTETDTYEEKEQ 198 (306)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccHHHH
Confidence 999999998888888755444444433
No 457
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.06 E-value=3.7e+02 Score=22.26 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
++.+.|+.|+..+=+.|.-|+-..+-|..+-..+..+...
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776666666665555555554444444333
No 458
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=24.06 E-value=2.4e+02 Score=23.45 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILV 314 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEK 314 (338)
+..+++++.++.+++.|+.++++|.+
T Consensus 11 e~~~~kl~q~e~~~k~L~nr~k~l~k 36 (86)
T PF12958_consen 11 EKAEKKLEQAEHKIKQLENRKKKLEK 36 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555543
No 459
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.06 E-value=2.3e+02 Score=22.38 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
++++++.++.++.++..+.++-..+-++.+++.+.++
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333333
No 460
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.86 E-value=1e+02 Score=25.86 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 252 KHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 252 lR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
+|.+-++++|+..+=. .+. -|. .+.+.+..-|+++.+.++.+|..|+..++.|+....
T Consensus 53 lr~~G~sL~eI~~~l~---~~~-~~~----~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T cd04784 53 CRSLDMSLDEIRTLLQ---LQD-DPE----ASCAEVNALIDEHLAHVRARIAELQALEKQLQALRE 110 (127)
T ss_pred HHHcCCCHHHHHHHHH---hhh-cCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777666521 111 111 133456666777777777777777777766654443
No 461
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.78 E-value=2.8e+02 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLee 318 (338)
+-..++-+.+.+..++++|+++...|.+++++
T Consensus 12 ln~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~ 43 (236)
T PF12017_consen 12 LNRTLKIENKKLKKKIRRLEKELKKLKQKLEK 43 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446667777777777777777777777754
No 462
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.78 E-value=7.9e+02 Score=25.06 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLT 258 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLT 258 (338)
|+.+...+|+....++|..-+...+..+++..-.+.+..+
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ss 40 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSS 40 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888777777776666655544
No 463
>PRK00736 hypothetical protein; Provisional
Probab=23.74 E-value=3.4e+02 Score=21.19 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.-++.-++.+..-+....++...|+++++.+.+.|+++
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555553
No 464
>PRK13411 molecular chaperone DnaK; Provisional
Probab=23.74 E-value=9.1e+02 Score=26.14 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKK 294 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEk 294 (338)
.++++++++..++.. +...-+..+....-+.+++.-+-.++-.+.+ .+..+-...++.+.+.|++-
T Consensus 502 ls~~ei~~~~~~~~~-~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~-------------~~~~~~~~er~~i~~~l~~~ 567 (653)
T PRK13411 502 LSSNEIERMRQEAEK-YAEEDRRRKQLIELKNQADSLLYSYESTLKE-------------NGELISEELKQRAEQKVEQL 567 (653)
T ss_pred chHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhccCCHHHHHHHHHHHHHH
Confidence 355677777666654 2222222222222333444444444433322 13444444566666666666
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEE---KIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 295 ieslEe---rIK~LEKQkeyLEKqLeelQ~ 321 (338)
.+-+.. ..+.++++.+.|++.+.....
T Consensus 568 ~~wL~~~~~~~~~~~~~~~el~~~~~~i~~ 597 (653)
T PRK13411 568 EAALTDPNISLEELKQQLEEFQQALLAIGA 597 (653)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 665554 244555555555555444444
No 465
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.74 E-value=2.7e+02 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyL 312 (338)
+=++.|.+++...+.|+..+|.+.+.|
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556555555666666666655554
No 466
>KOG0289|consensus
Probab=23.45 E-value=7.3e+02 Score=26.70 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=54.7
Q ss_pred cCCCcHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCCCchhh-----
Q psy14557 213 SDTVVTCGDKAFA-----------ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQL----TLTEIKRLQPTTNTY----- 272 (338)
Q Consensus 213 ~~~~deELqKaf~-----------ELQ~KlieTQQQLq~V~~QiqqlErelR~aeL----TlkELekLPeDTkVY----- 272 (338)
+..+=|.|-|.|+ +|.++++.++|+|..+.-|..+.-|-+.|... +.+.|.++.+.+..-
T Consensus 65 satSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav 144 (506)
T KOG0289|consen 65 SATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAV 144 (506)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCccccccccccc
Confidence 4445577777776 68889999999999998887766665544332 344566665444333
Q ss_pred ---hhhccccc--cc------CchHHHHHHHHHHHHHHHHHHHH
Q psy14557 273 ---ESVGRMFI--KT------PHPEVVVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 273 ---KSVGRMFV--lt------dKdeI~eeLeEkieslEerIK~L 305 (338)
...-+.|+ -. -.++|+..|+++...+..+.|+-
T Consensus 145 ~~~~~~s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkr 188 (506)
T KOG0289|consen 145 PSLAQSSVVGVAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKR 188 (506)
T ss_pred ccccccchhhhhcCCccccccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 11111221 11 23456666666666666555543
No 467
>PHA02047 phage lambda Rz1-like protein
Probab=23.43 E-value=3e+02 Score=23.70 Aligned_cols=58 Identities=5% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccccc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFI 280 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFV 280 (338)
.+...+..++.++...|++++.+.++-++..++++ .++++=.+- .|.+|=-+|++.|-
T Consensus 38 ~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~---~aL~~n~~W-aD~PVPpaV~~~Lc 95 (101)
T PHA02047 38 RQTARLEALEVRYATLQRHVQAVEARTNTQRQEVD---RALDQNRPW-ADRPVPPAVVDSLC 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-ccCCCChHHHHHHH
Confidence 34555666666777777777777666444444333 222222222 24555556665553
No 468
>PRK10807 paraquat-inducible protein B; Provisional
Probab=23.11 E-value=5.2e+02 Score=27.67 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQ--DIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEK 301 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V--~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEer 301 (338)
|.+|++++..+-.+++.+ +.=...++..++.+.-++++++..-. .+..+........+..+|.+-.+.++.-
T Consensus 415 l~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~------~l~~ll~~~~~~~Lp~~L~~TL~~l~~~ 488 (547)
T PRK10807 415 LAQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLD------SLNKITSSQSMQQLPADMQKTLRELNRS 488 (547)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554443 11222344444444444444443211 1112222233344445555555554443
Q ss_pred HH
Q psy14557 302 IK 303 (338)
Q Consensus 302 IK 303 (338)
++
T Consensus 489 l~ 490 (547)
T PRK10807 489 MQ 490 (547)
T ss_pred Hh
Confidence 33
No 469
>KOG4643|consensus
Probab=23.08 E-value=9.1e+02 Score=28.66 Aligned_cols=86 Identities=19% Similarity=0.285 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCchhhhhhccc-ccccCchHHHHH---HHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ-----PTTNTYESVGRM-FIKTPHPEVVVN---LEKK 294 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP-----eDTkVYKSVGRM-FVltdKdeI~ee---LeEk 294 (338)
+.+|...+.+....+..+++.++..-.+.+++.--..||..+- +|++.-..+|.. |++.-+.+++.+ |-+.
T Consensus 200 ll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLlee 279 (1195)
T KOG4643|consen 200 LLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEE 279 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHH
Confidence 3445555566666677777777777778888888888888773 233333445543 555545555554 4444
Q ss_pred HHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEK 309 (338)
Q Consensus 295 ieslEerIK~LEKQk 309 (338)
.+.+++.+..|+++-
T Consensus 280 keMLeeQLq~lrars 294 (1195)
T KOG4643|consen 280 KEMLEEQLQKLRARS 294 (1195)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555555555555444
No 470
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.03 E-value=2.3e+02 Score=23.31 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 301 KIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 301 rIK~LEKQkeyLEKqLeelQ~~ 322 (338)
.+.-|+.+.+.|+.++++++..
T Consensus 80 ~~~~l~~~~~~l~~~i~~l~~~ 101 (113)
T cd01109 80 RLELLEEHREELEEQIAELQET 101 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 471
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=23.03 E-value=8e+02 Score=27.79 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVEN 247 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~Qiqq 247 (338)
+++.+.++|.++...++.+...+..+..
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~k 160 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEK 160 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555444444444444444433
No 472
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.01 E-value=3e+02 Score=26.39 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
-+++..+.+||+.+..++-++....-|++++...-|....-+.++.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999999888888776666643
No 473
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=22.98 E-value=8.9e+02 Score=25.40 Aligned_cols=41 Identities=7% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+..+|+...+..+.++..++++.+-..+++.++|.+...+=
T Consensus 84 l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 84 LLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 35667777778888888888888888888888888777654
No 474
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.94 E-value=1.1e+03 Score=26.35 Aligned_cols=101 Identities=9% Similarity=0.066 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHH-
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQ-VENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEK- 293 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~Q-iqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeE- 293 (338)
.+..+...+..++.=+.++-+|++.+-.| -..++ +...+.|+..+ .-++..|.... .......++.+.+
T Consensus 174 ~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~------~~v~~~L~~~~--~~lg~~i~~~l-~~~~~~~L~~i~~l 244 (806)
T PF05478_consen 174 TPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELK------DHVSSDLDNIG--SLLGGDIQDQL-GSNVYPALDSILDL 244 (806)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHHHhcc--chhhHHHHHHH-hhhhHHHHHHHHHH
Confidence 34455555666666555555665555554 32222 23445555553 23333333322 1222222233333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 --KVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 294 --kieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.+..+...+..+.+..+.|+....+++..|++
T Consensus 245 ~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~ 278 (806)
T PF05478_consen 245 AQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRG 278 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555554444444444443
No 475
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.93 E-value=2.9e+02 Score=24.55 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+.++...+++.+.-+++|+.+...=+.++..+.++|.++.+.|
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=22.88 E-value=9.2e+02 Score=25.50 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ 256 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ae 256 (338)
|+..+......+..++++.......+..++.++..+.
T Consensus 314 L~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 314 LRSELEKEKEELERLKEREKEASSEVSSLEAELNKTR 350 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 4444444444455555555555555556655555433
No 477
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.86 E-value=2.6e+02 Score=28.49 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
..+++.+...++.+++.++.+.+.+++++++++++|..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777777777777777777777776665
No 478
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.79 E-value=1.2e+02 Score=25.16 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
.+++..-|+++.+.++.+++.|+..+..|+..+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 77 CAEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777776665444
No 479
>PF13864 Enkurin: Calmodulin-binding
Probab=22.77 E-value=4.2e+02 Score=21.57 Aligned_cols=48 Identities=6% Similarity=0.112 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKI---------QDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~---------V~~QiqqlErelR~aeLTlkELe 263 (338)
+++|..+.+..|+.+..++..+++. ....++.+|+++..++-..+-|+
T Consensus 38 ~eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~ls 94 (98)
T PF13864_consen 38 SEEERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLS 94 (98)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678888999999988888888876 45566667777766666555444
No 480
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=22.67 E-value=4e+02 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 218 TCGDKAFAELQIKMMDTKQ-----KLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQ-----QLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
.|+++-|..|+.....-.. -...+..|++++.|++....+-.++...
T Consensus 47 ~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~ 98 (173)
T PF07445_consen 47 QEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQSLRKKESKP 98 (173)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccc
Confidence 4888888888774433221 2346677999999988766644444443
No 481
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.52 E-value=3.1e+02 Score=23.08 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+.+..|.+++..++.+++.|++..+.|+..+....+
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555565655555555555555544433
No 482
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=22.50 E-value=4.3e+02 Score=23.30 Aligned_cols=35 Identities=9% Similarity=0.262 Sum_probs=30.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
.|+++..++.+.+..++.+...|+-+.+.+.+..+
T Consensus 17 ~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 17 WKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999888877766
No 483
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.46 E-value=3e+02 Score=27.03 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKK 250 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlEr 250 (338)
+..|.+.+..+|.+..+++.+++.....+.++.|
T Consensus 52 ~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~ 85 (247)
T COG3879 52 DLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRR 85 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777777777776663
No 484
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=22.41 E-value=1.7e+02 Score=27.10 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14557 312 ILVPALKIARYLVILI 327 (338)
Q Consensus 312 LEKqLeelQ~~LrElL 327 (338)
+++++++.++.|+.++
T Consensus 147 ~de~L~~I~d~iK~Ii 162 (163)
T PF03233_consen 147 FDERLKEIRDKIKKII 162 (163)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4444555555554443
No 485
>KOG3313|consensus
Probab=22.38 E-value=6.8e+02 Score=23.77 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCCchhhhhhcc-cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 266 QPTTNTYESVGR-MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 266 PeDTkVYKSVGR-MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
|+-.+||=-+|- ..+.=+.++..+=|++++.++...++.++.-.+||+.|+-.++-
T Consensus 107 ~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEV 163 (187)
T KOG3313|consen 107 PPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEV 163 (187)
T ss_pred CCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeee
Confidence 555667777786 55666888888889999999999999999999998888765543
No 486
>KOG0994|consensus
Probab=22.38 E-value=1.3e+03 Score=28.15 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy14557 49 KILAAVQ 55 (338)
Q Consensus 49 rlL~Av~ 55 (338)
.|+.+++
T Consensus 1278 ~l~~~~k 1284 (1758)
T KOG0994|consen 1278 GLLTTYK 1284 (1758)
T ss_pred HHHHHHH
Confidence 3333333
No 487
>PRK10698 phage shock protein PspA; Provisional
Probab=22.37 E-value=6.6e+02 Score=23.63 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 288 ~eeLeEkieslEerIK~L 305 (338)
.+.+++++...+.+.+.+
T Consensus 168 f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 168 FESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHhHh
Confidence 344677777666666554
No 488
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=22.33 E-value=69 Score=26.56 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHhhhhh
Q psy14557 42 LNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 42 ~dp~hR~rlL~Av~~L~~ 59 (338)
.|++.|+++|+|+|...|
T Consensus 61 ~D~EqR~~vL~a~Q~alD 78 (87)
T PF09059_consen 61 NDEEQRQNVLDAVQEALD 78 (87)
T ss_dssp S-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 689999999999998665
No 489
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.30 E-value=4.9e+02 Score=22.13 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLK 239 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq 239 (338)
+.+-.+|+.+....+.+++
T Consensus 35 k~~~~~l~~~~~~~~~~l~ 53 (158)
T PF03938_consen 35 KDAQAKLQEKFKALQKELQ 53 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334443333333333
No 490
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.28 E-value=3.9e+02 Score=24.52 Aligned_cols=81 Identities=10% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCchhh---hhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 248 FKKNKHHTQLTLTEIKRLQPTTNTY---ESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 248 lErelR~aeLTlkELekLPeDTkVY---KSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+.+-..+...|......|-+....| +.+-..-.......-+.+|+++.+.++.++..++.+.+.+++..++......
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q psy14557 325 ILIR 328 (338)
Q Consensus 325 ElLr 328 (338)
+..+
T Consensus 166 k~~~ 169 (189)
T PF10211_consen 166 KKHQ 169 (189)
T ss_pred HHHH
No 491
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=22.26 E-value=8.4e+02 Score=24.80 Aligned_cols=107 Identities=14% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL--QPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL--PeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
..+-.|.-|..++..++..|+.-..=++.+.|++..++--.+|++.+ .+..+|=+.+|+ ..+..+=+..|..+--
T Consensus 155 kaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~K---qes~eERL~QlqsEN~ 231 (305)
T PF14915_consen 155 KAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGK---QESLEERLSQLQSENM 231 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
-+...+....++...-++.+-+.|+++..+++
T Consensus 232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~ 263 (305)
T PF14915_consen 232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVK 263 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 492
>KOG4674|consensus
Probab=22.15 E-value=1.3e+03 Score=28.97 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccC-chHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTP-HPEVVVNLEKKVK 296 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltd-KdeI~eeLeEkie 296 (338)
.+|+..+..+...+...+.+++.+.++...+..-+.....++.++..- +.+| +++.-=--+ +..+.+-+++..+
T Consensus 220 ~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t---~~s~--~~kf~~El~~q~kL~eL~ks~~e 294 (1822)
T KOG4674|consen 220 EQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDT---AESS--EEKFEKELSTQKKLNELWKSKLE 294 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.+..+...|......+++-++++...+.+..
T Consensus 295 e~~~~~~el~~~i~~~~klled~~~~~~e~~ 325 (1822)
T KOG4674|consen 295 ELSHEVAELQRAIEELEKLLEDASERNKENT 325 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
No 493
>KOG4552|consensus
Probab=22.11 E-value=2.5e+02 Score=27.43 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 281 KTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 281 ltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+..++..+..|+.+++.-++.|..|+|+.+.-|--+..+-=+-++.|+++
T Consensus 69 q~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi 118 (272)
T KOG4552|consen 69 QQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSI 118 (272)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=21.95 E-value=30 Score=37.62 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKI 302 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerI 302 (338)
.|..+..+....+++...-..+.+.+++.++..+-..+.+....+....+...-..--..+.+.-.++++++....+...
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~ 90 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENL 90 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 303 KDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 303 K~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
++|.++...++++...+++....+
T Consensus 91 e~L~~~~~~L~E~~~~L~~~~~~l 114 (759)
T PF01496_consen 91 EKLEEELNELEEEKNVLEEEIEFL 114 (759)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=21.91 E-value=3.7e+02 Score=21.69 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHHHHHhccC
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEK-------AIILVPAL-------KIARYLVILIRLNT 331 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQk-------eyLEKqLe-------elQ~~LrElLr~~~ 331 (338)
.++|..+.+...+++..+...+ ..++|.+. ++...|-|+|.+.|
T Consensus 12 keeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLAEIMNRKD 69 (69)
T PF08912_consen 12 KEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLAEIMNRKD 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
No 496
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.87 E-value=2.4e+02 Score=23.42 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
.+.+++.+-|+++.+.++.+|+.|+..+.+|+..+
T Consensus 77 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 77 RPCPDLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=21.73 E-value=6.5e+02 Score=23.35 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 241 QDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 241 V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
..+-...+..+++++.-...++.+|-.++.. +.-++-++++..++++.+..... -|++++-++|
T Consensus 16 fvmaCkaYv~eKK~Insl~~~v~~l~nk~d~--------------~~yknyk~ki~eLke~lK~~~NA--Eleekll~lq 79 (160)
T PF03978_consen 16 FVMACKAYVEEKKEINSLIEDVSKLNNKSDA--------------EAYKNYKKKINELKEDLKDVSNA--ELEEKLLKLQ 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccH--------------HHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHH
Q ss_pred HHHHHHH
Q psy14557 321 RYLVILI 327 (338)
Q Consensus 321 ~~LrElL 327 (338)
+.+++.|
T Consensus 80 ~lfq~Kl 86 (160)
T PF03978_consen 80 KLFQDKL 86 (160)
T ss_pred HHHHHHH
No 498
>PHA00727 hypothetical protein
Probab=21.72 E-value=2.4e+02 Score=27.39 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Q psy14557 218 TCGDKA--FAELQIKMMDTKQKLKIQDIQVENFKK-NKHHTQLTLTEIKRL 265 (338)
Q Consensus 218 eELqKa--f~ELQ~KlieTQQQLq~V~~QiqqlEr-elR~aeLTlkELekL 265 (338)
||++|| |.||.+++.+.|.|+.--..++.-++. ++|+-++-..+.+.|
T Consensus 12 eelrkaqsleelkqkyee~qkqi~dgk~lkrlykvyekrefelk~~qf~ql 62 (278)
T PHA00727 12 EELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQL 62 (278)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=21.68 E-value=1.1e+03 Score=25.74 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhccCCCchhhhhhccccccc-CchHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHT--------QLTLTEIKRLQPTTNTYESVGRMFIKT-PHPEVVV 289 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~a--------eLTlkELekLPeDTkVYKSVGRMFVlt-dKdeI~e 289 (338)
++.|.++-||.-+..+|..|+..+..++.+..+++.+ +.=..|+..-....--|--+.|.+=++ --=+-+.
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYE-EKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 290 eLeEkieslE-erIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.|+.+.+.+. ..+.-|++.++..+.++-.+|++++.
T Consensus 467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk 503 (527)
T PF15066_consen 467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQK 503 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG0884|consensus
Probab=21.66 E-value=45 Score=30.05 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=0.0
Q ss_pred HHHHHhccCCCchhhhhhcccccc
Q psy14557 258 TLTEIKRLQPTTNTYESVGRMFIK 281 (338)
Q Consensus 258 TlkELekLPeDTkVYKSVGRMFVl 281 (338)
|++||++||-+.++||++-..-|+
T Consensus 127 tldele~l~v~~ktyrpl~~~~ik 150 (161)
T KOG0884|consen 127 TLDELEKLPVNEKTYRPLNDVHIK 150 (161)
T ss_pred hHHHHhhcccCccccccchheeee
Done!