Query psy14557
Match_columns 338
No_of_seqs 177 out of 377
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 22:55:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zqm_A Prefoldin beta subunit 99.8 3E-18 1E-22 139.3 14.7 108 223-330 7-114 (117)
2 1fxk_A Prefoldin; archaeal pro 99.8 1.2E-18 4E-23 140.0 11.2 104 224-327 3-106 (107)
3 1v38_A SAM-domain protein sams 99.6 1.2E-15 4.1E-20 119.0 4.0 61 2-62 16-76 (78)
4 2dl0_A SAM and SH3 domain-cont 99.4 8.5E-14 2.9E-18 113.1 2.9 60 2-61 27-86 (97)
5 2k4p_A Phosphatidylinositol-3, 99.4 1.8E-13 6.2E-18 109.2 4.1 57 2-58 30-86 (86)
6 3hil_A Ephrin type-A receptor 99.4 2.3E-13 7.7E-18 107.6 3.2 56 2-57 27-82 (82)
7 3kka_C Ephrin type-A receptor 99.4 2.4E-13 8.2E-18 108.3 3.4 58 2-59 25-82 (86)
8 1ucv_A Ephrin type-A receptor 99.3 4E-13 1.4E-17 104.9 3.8 60 2-61 11-70 (81)
9 3h8m_A Ephrin type-A receptor 99.3 4E-13 1.4E-17 107.8 3.6 58 2-59 29-86 (90)
10 1b4f_A EPHB2; SAM domain, EPH 99.3 5.6E-13 1.9E-17 103.8 3.6 59 2-60 15-73 (82)
11 1x40_A ARAP2; ASAP-related pro 99.3 5E-13 1.7E-17 106.8 3.2 60 2-61 19-78 (91)
12 2e8n_A Ephrin type-A receptor 99.3 6.7E-13 2.3E-17 105.1 3.8 60 2-61 16-75 (88)
13 2kso_A Ephrin type-A receptor 99.3 3.9E-13 1.3E-17 105.7 2.3 60 2-61 20-79 (82)
14 1b0x_A Protein (EPHA4 receptor 99.3 6.7E-13 2.3E-17 106.4 3.4 59 2-60 30-88 (94)
15 2eam_A Putative 47 kDa protein 99.3 7.3E-13 2.5E-17 102.9 3.3 59 2-60 16-76 (80)
16 2kg5_A ARF-GAP, RHO-GAP domain 99.3 1.5E-12 5E-17 106.3 5.1 64 2-65 30-93 (100)
17 2lmr_A ODIN, ankyrin repeat an 99.3 1.1E-12 3.7E-17 107.6 3.4 61 2-62 33-95 (101)
18 2qkq_A Ephrin type-B receptor 99.3 1.1E-12 3.9E-17 102.5 3.1 60 2-61 19-78 (83)
19 2eao_A Ephrin type-B receptor 99.2 2.1E-12 7.3E-17 104.3 3.3 60 2-61 26-85 (99)
20 2ke7_A Ankyrin repeat and ster 99.2 5.8E-12 2E-16 102.6 3.3 58 2-59 26-85 (103)
21 3sei_A Caskin-1; SAM domain, p 99.2 5.4E-12 1.9E-16 108.7 3.2 59 2-60 83-141 (149)
22 3sei_A Caskin-1; SAM domain, p 99.1 2.5E-11 8.5E-16 104.6 3.5 59 2-61 14-72 (149)
23 2kiv_A Ankyrin repeat and ster 99.1 1.7E-11 5.9E-16 105.0 1.5 59 2-60 18-78 (148)
24 3k1r_B Usher syndrome type-1G 99.0 2.2E-10 7.5E-15 88.7 3.4 56 2-59 6-61 (74)
25 1ow5_A Serine/threonine-protei 98.9 3.6E-10 1.2E-14 90.8 3.3 61 2-62 19-79 (85)
26 2kiv_A Ankyrin repeat and ster 98.9 3.3E-10 1.1E-14 97.0 2.7 54 2-55 92-146 (148)
27 3bq7_A Diacylglycerol kinase d 98.8 2.1E-09 7.3E-14 83.5 3.4 58 2-60 16-73 (81)
28 2f3n_A SH3 and multiple ankyri 98.8 2.8E-09 9.7E-14 81.9 3.5 59 2-61 11-69 (76)
29 3bs5_B Connector enhancer of k 98.7 5.4E-09 1.9E-13 80.3 3.8 64 2-66 13-78 (80)
30 2gle_A Neurabin-1; SAM domain, 98.7 8.5E-09 2.9E-13 78.2 4.0 57 2-59 13-69 (74)
31 1fxk_C Protein (prefoldin); ar 98.7 2.5E-07 8.5E-12 77.1 12.7 106 224-329 3-131 (133)
32 2zdi_C Prefoldin subunit alpha 98.7 8.1E-08 2.8E-12 82.2 9.6 112 221-332 8-144 (151)
33 2ean_A Connector enhancer of k 98.6 2E-08 6.8E-13 77.9 2.8 59 2-61 17-77 (83)
34 2y9u_A Tumor protein 63; apopt 98.6 2.5E-08 8.4E-13 76.9 2.9 57 2-59 8-64 (69)
35 3bs7_A Protein aveugle; sterIl 98.5 1E-07 3.5E-12 72.9 4.2 57 2-59 12-70 (78)
36 2y9t_A Tumor protein 63; apopt 98.5 5.2E-08 1.8E-12 77.5 2.4 58 2-60 10-67 (82)
37 2d3d_A VTS1 protein; RNA bindi 98.4 1.1E-07 3.8E-12 76.8 4.0 55 3-60 23-77 (88)
38 3bs5_A Protein aveugle; sterIl 98.3 2.6E-07 9E-12 75.7 4.2 57 2-59 32-90 (106)
39 3tad_C Liprin-beta-1; protein 98.3 3.2E-07 1.1E-11 86.5 4.1 59 3-62 97-155 (265)
40 2es6_A VTS1P; SAM domain, prot 98.3 2.9E-07 1E-11 76.0 2.9 55 3-60 36-90 (101)
41 1wwv_A Connector enhancer of k 98.3 7.1E-07 2.4E-11 71.7 4.6 64 3-69 21-86 (91)
42 1v85_A Similar to ring finger 98.2 1.2E-06 4.1E-11 69.5 4.2 59 2-61 26-88 (91)
43 2e8o_A SAM domain and HD domai 98.1 9.3E-07 3.2E-11 71.6 2.5 58 2-60 36-95 (103)
44 2b6g_A VTS1P; alpha-helix, pen 98.1 1.4E-06 4.8E-11 73.7 3.7 55 3-60 54-108 (119)
45 3tad_C Liprin-beta-1; protein 98.0 2.4E-06 8.1E-11 80.6 3.4 57 3-60 25-82 (265)
46 3tac_B Liprin-alpha-2; transfe 98.0 4.1E-06 1.4E-10 81.3 4.8 60 3-63 168-228 (334)
47 1oxj_A RNA-binding protein sma 98.0 2.8E-06 9.4E-11 76.0 3.2 55 3-61 12-66 (173)
48 2d8c_A Phosphatidylcholine:cer 97.5 3.5E-05 1.2E-09 62.5 2.4 58 2-62 26-85 (97)
49 1kw4_A Polyhomeotic; SAM domai 97.1 0.00032 1.1E-08 55.7 4.0 56 2-59 23-80 (89)
50 3tac_B Liprin-alpha-2; transfe 97.0 0.00053 1.8E-08 66.6 4.5 61 4-65 47-110 (334)
51 3aei_A Prefoldin beta subunit 95.8 0.093 3.2E-06 42.2 10.4 88 233-320 8-95 (99)
52 1l8d_A DNA double-strand break 95.3 0.29 9.9E-06 39.0 11.9 105 222-329 3-107 (112)
53 2zqm_A Prefoldin beta subunit 94.5 0.038 1.3E-06 44.2 4.5 100 219-320 10-111 (117)
54 1pk1_B Sex COMB on midleg CG94 94.3 0.041 1.4E-06 43.7 4.2 59 2-62 23-84 (89)
55 2l5y_A Stromal interaction mol 94.0 0.021 7.2E-07 49.9 2.1 52 3-55 88-145 (150)
56 1fxk_A Prefoldin; archaeal pro 93.3 0.21 7.2E-06 39.3 6.7 98 219-318 5-104 (107)
57 3mq9_A Bone marrow stromal ant 93.2 1 3.5E-05 43.4 12.7 42 286-327 429-470 (471)
58 2dfs_A Myosin-5A; myosin-V, in 92.6 0.43 1.5E-05 52.3 10.0 42 286-327 984-1025(1080)
59 2dkz_A Hypothetical protein LO 92.0 0.095 3.2E-06 42.0 3.0 53 1-55 23-77 (84)
60 2dfs_A Myosin-5A; myosin-V, in 90.9 2.3 7.9E-05 46.6 13.4 37 285-321 1015-1051(1080)
61 3na7_A HP0958; flagellar bioge 90.6 6.2 0.00021 35.8 14.0 55 222-277 32-97 (256)
62 3na7_A HP0958; flagellar bioge 90.3 3.6 0.00012 37.4 12.2 42 220-261 23-64 (256)
63 3ghg_A Fibrinogen alpha chain; 90.3 1.6 5.6E-05 44.9 10.8 90 219-326 61-150 (562)
64 1dxs_A P53-like transcription 90.2 0.12 4E-06 41.2 1.9 57 2-59 10-66 (80)
65 3oja_B Anopheles plasmodium-re 90.2 1.6 5.4E-05 43.0 10.3 27 220-246 454-480 (597)
66 2pnv_A Small conductance calci 88.8 0.91 3.1E-05 32.1 5.5 34 284-317 7-40 (43)
67 2k60_A Protein (stromal intera 88.3 0.15 5.3E-06 44.5 1.4 53 3-56 88-146 (150)
68 1ic2_A Tropomyosin alpha chain 88.1 7.4 0.00025 29.9 12.6 45 289-333 37-81 (81)
69 3oja_A Leucine-rich immune mol 84.9 12 0.0004 36.2 12.8 100 227-326 358-468 (487)
70 1i84_S Smooth muscle myosin he 84.4 6.9 0.00024 42.9 12.1 22 120-141 676-697 (1184)
71 3o0z_A RHO-associated protein 84.2 22 0.00075 31.5 13.5 38 286-323 90-127 (168)
72 3vkg_A Dynein heavy chain, cyt 82.5 12 0.00042 45.7 13.9 47 282-328 2010-2056(3245)
73 1l8d_A DNA double-strand break 82.4 8.9 0.0003 30.3 9.1 96 218-317 6-102 (112)
74 1m1j_C Fibrinogen gamma chain; 81.6 26 0.00091 34.7 13.9 108 219-328 24-133 (409)
75 3oja_B Anopheles plasmodium-re 81.5 11 0.00039 36.8 11.3 31 227-257 454-484 (597)
76 1m1j_B Fibrinogen beta chain; 81.0 35 0.0012 34.5 14.7 44 220-263 98-148 (464)
77 1fxk_C Protein (prefoldin); ar 78.5 3.4 0.00012 33.8 5.5 98 232-329 4-124 (133)
78 3lss_A Seryl-tRNA synthetase; 77.3 14 0.00047 37.4 10.6 30 302-331 113-142 (484)
79 1i84_S Smooth muscle myosin he 76.2 9.8 0.00034 41.7 9.8 38 219-256 861-898 (1184)
80 3hnw_A Uncharacterized protein 75.3 33 0.0011 29.1 10.9 103 215-326 25-129 (138)
81 1m1j_B Fibrinogen beta chain; 73.3 33 0.0011 34.7 12.0 26 301-326 169-194 (464)
82 3ghg_A Fibrinogen alpha chain; 72.3 30 0.001 35.8 11.5 46 218-263 67-112 (562)
83 2v71_A Nuclear distribution pr 72.1 56 0.0019 29.4 12.4 39 289-327 105-143 (189)
84 1deq_A Fibrinogen (alpha chain 71.9 36 0.0012 33.8 11.6 90 219-326 64-153 (390)
85 3oja_A Leucine-rich immune mol 71.9 12 0.0004 36.1 8.2 52 284-335 433-484 (487)
86 2fxo_A Myosin heavy chain, car 71.4 42 0.0014 27.7 14.6 44 283-326 80-123 (129)
87 3qne_A Seryl-tRNA synthetase, 70.1 69 0.0023 32.4 13.6 30 302-331 80-109 (485)
88 3etw_A Adhesin A; antiparallel 69.5 50 0.0017 27.7 12.3 35 279-313 68-102 (119)
89 2l5g_B Putative uncharacterize 69.2 7.9 0.00027 27.4 4.6 34 289-322 5-38 (42)
90 2dq0_A Seryl-tRNA synthetase; 68.2 47 0.0016 32.9 11.8 30 302-331 78-107 (455)
91 2v4h_A NF-kappa-B essential mo 67.7 53 0.0018 27.4 12.8 39 223-261 25-63 (110)
92 3u0c_A Invasin IPAB, 62 kDa an 65.7 41 0.0014 30.3 9.7 58 221-278 99-156 (201)
93 3ghg_C Fibrinogen gamma chain; 65.2 1.1E+02 0.0037 30.5 13.6 109 219-329 24-134 (411)
94 3swy_A Cyclic nucleotide-gated 64.9 21 0.0007 25.5 6.2 38 290-327 2-39 (46)
95 3he5_A Synzip1; heterodimeric 64.7 18 0.00062 25.7 5.8 39 286-324 3-48 (49)
96 3vkg_A Dynein heavy chain, cyt 64.1 32 0.0011 42.3 11.2 46 285-330 2034-2079(3245)
97 3tnu_B Keratin, type II cytosk 62.8 62 0.0021 26.5 10.0 32 223-254 37-68 (129)
98 3o0z_A RHO-associated protein 62.2 84 0.0029 27.8 13.7 35 293-327 118-156 (168)
99 4dk0_A Putative MACA; alpha-ha 61.1 38 0.0013 31.0 9.0 41 214-254 62-102 (369)
100 1wle_A Seryl-tRNA synthetase; 61.0 69 0.0024 32.3 11.6 34 298-331 121-154 (501)
101 1x79_B RAB GTPase binding effe 60.8 72 0.0025 26.5 11.4 43 285-327 37-79 (112)
102 3rrk_A V-type ATPase 116 kDa s 60.3 75 0.0025 29.4 11.0 73 244-327 61-136 (357)
103 3mq9_A Bone marrow stromal ant 59.9 76 0.0026 30.3 11.2 29 291-319 441-469 (471)
104 3tnu_A Keratin, type I cytoske 59.8 58 0.002 26.8 9.1 31 224-254 40-70 (131)
105 2oqq_A Transcription factor HY 59.4 40 0.0014 23.8 6.7 31 286-316 3-33 (42)
106 2no2_A HIP-I, huntingtin-inter 59.4 71 0.0024 26.0 11.4 37 227-263 6-42 (107)
107 1uqv_A STE50 protein; SAM, ste 59.1 3.6 0.00012 33.0 1.5 31 29-59 48-78 (85)
108 1wle_A Seryl-tRNA synthetase; 59.0 49 0.0017 33.4 10.1 34 287-320 117-150 (501)
109 1m1j_C Fibrinogen gamma chain; 59.0 56 0.0019 32.3 10.3 36 291-326 89-124 (409)
110 3l4q_C Phosphatidylinositol 3- 58.5 98 0.0034 27.3 10.8 107 216-325 11-128 (170)
111 2oqq_A Transcription factor HY 58.2 17 0.00059 25.7 4.7 34 283-316 7-40 (42)
112 3fpp_A Macrolide-specific effl 58.2 36 0.0012 30.8 8.3 41 215-255 62-102 (341)
113 2ocy_A RAB guanine nucleotide 56.4 1E+02 0.0035 26.9 11.5 67 257-334 83-149 (154)
114 1m1j_A Fibrinogen alpha subuni 56.1 1.4E+02 0.0047 30.5 12.6 89 219-325 62-150 (491)
115 1gd2_E Transcription factor PA 56.0 20 0.0007 27.4 5.2 43 283-325 26-68 (70)
116 2xdj_A Uncharacterized protein 55.8 41 0.0014 26.3 7.1 41 222-262 20-60 (83)
117 1ic2_A Tropomyosin alpha chain 55.4 41 0.0014 25.7 6.9 31 227-257 4-34 (81)
118 2aze_B Transcription factor E2 55.2 18 0.0006 29.5 5.1 38 291-328 4-41 (106)
119 3uul_A Utrophin; spectrin repe 55.1 63 0.0022 24.3 8.1 24 288-311 80-103 (118)
120 3ol1_A Vimentin; structural ge 54.9 86 0.0029 25.6 10.2 22 297-318 87-108 (119)
121 3bas_A Myosin heavy chain, str 53.5 77 0.0026 24.6 11.8 29 295-323 58-86 (89)
122 1t2k_D Cyclic-AMP-dependent tr 53.2 45 0.0015 24.1 6.5 36 285-320 21-56 (61)
123 1ses_A Seryl-tRNA synthetase; 52.5 1.1E+02 0.0038 29.9 11.2 35 297-331 68-102 (421)
124 3swf_A CGMP-gated cation chann 52.3 27 0.00092 27.3 5.4 37 289-325 3-39 (74)
125 2yy0_A C-MYC-binding protein; 52.2 9.8 0.00034 27.6 2.8 30 218-247 22-51 (53)
126 2w83_C C-JUN-amino-terminal ki 51.3 17 0.00059 28.6 4.2 38 288-325 39-76 (77)
127 1go4_E MAD1 (mitotic arrest de 50.6 41 0.0014 27.5 6.6 42 266-312 53-94 (100)
128 3nmd_A CGMP dependent protein 50.1 34 0.0012 26.6 5.6 31 295-325 35-65 (72)
129 3efg_A Protein SLYX homolog; x 48.7 64 0.0022 24.9 7.1 46 285-330 13-58 (78)
130 3q0x_A Centriole protein; cent 47.4 55 0.0019 30.1 7.6 56 208-263 153-212 (228)
131 3q8t_A Beclin-1; autophagy, AT 47.1 1.1E+02 0.0036 24.4 12.3 89 218-321 7-95 (96)
132 3ibp_A Chromosome partition pr 46.8 2E+02 0.0067 27.7 11.5 92 219-318 7-101 (302)
133 2wt7_A Proto-oncogene protein 46.2 76 0.0026 23.1 6.9 37 285-321 22-58 (63)
134 2dq3_A Seryl-tRNA synthetase; 46.0 41 0.0014 32.9 6.9 30 302-331 77-106 (425)
135 1urf_A Protein kinase C-like 1 45.7 37 0.0012 27.0 5.3 28 221-248 42-69 (81)
136 3hhm_B NISH2 P85alpha; PI3KCA, 45.5 2.2E+02 0.0075 27.6 13.9 45 281-325 193-237 (373)
137 3uun_A Dystrophin; triple heli 45.5 93 0.0032 23.3 8.9 39 273-311 63-103 (119)
138 3idw_A Actin cytoskeleton-regu 45.3 20 0.00067 27.9 3.6 46 10-57 19-64 (72)
139 3u59_A Tropomyosin beta chain; 45.0 68 0.0023 25.3 6.9 41 288-328 32-72 (101)
140 1u6h_B Talin; protein-protein 44.6 4.9 0.00017 26.6 0.1 17 43-59 1-17 (31)
141 3hnw_A Uncharacterized protein 44.4 1.4E+02 0.0049 25.1 11.2 34 291-324 101-134 (138)
142 4e61_A Protein BIM1; EB1-like 44.0 83 0.0029 26.0 7.4 36 218-253 7-42 (106)
143 3qne_A Seryl-tRNA synthetase, 42.5 69 0.0024 32.3 8.1 32 289-320 74-105 (485)
144 2y3a_B Phosphatidylinositol 3- 42.1 42 0.0014 31.8 6.2 49 278-326 82-130 (302)
145 2jee_A YIIU; FTSZ, septum, coi 42.0 1.3E+02 0.0043 23.8 11.6 28 223-250 7-34 (81)
146 3gp4_A Transcriptional regulat 41.9 58 0.002 27.0 6.4 42 283-324 78-119 (142)
147 3lss_A Seryl-tRNA synthetase; 41.0 2E+02 0.007 28.9 11.2 94 222-320 37-138 (484)
148 3htk_A Structural maintenance 40.7 85 0.0029 22.1 6.3 45 286-330 5-49 (60)
149 3q8t_A Beclin-1; autophagy, AT 40.5 80 0.0027 25.1 6.7 38 288-325 13-50 (96)
150 1lrz_A FEMA, factor essential 40.3 55 0.0019 31.3 6.8 45 282-326 243-300 (426)
151 1nkp_A C-MYC, MYC proto-oncoge 40.2 60 0.0021 25.2 5.8 43 283-325 42-84 (88)
152 2ocy_A RAB guanine nucleotide 40.1 1.9E+02 0.0064 25.2 10.9 29 226-254 17-45 (154)
153 1nlw_A MAD protein, MAX dimeri 40.0 63 0.0021 24.8 5.8 40 278-317 39-78 (80)
154 2wt7_A Proto-oncogene protein 39.8 76 0.0026 23.1 6.0 35 292-326 22-56 (63)
155 1t2k_D Cyclic-AMP-dependent tr 39.5 79 0.0027 22.7 6.0 35 292-326 21-55 (61)
156 3mq7_A Bone marrow stromal ant 39.4 1.7E+02 0.006 24.7 13.4 37 287-323 72-108 (121)
157 1ci6_A Transcription factor AT 39.4 77 0.0026 23.2 6.0 29 295-323 25-53 (63)
158 1ci6_A Transcription factor AT 39.1 88 0.003 22.9 6.3 41 285-325 22-62 (63)
159 1nkp_B MAX protein, MYC proto- 39.0 21 0.00071 27.2 2.9 62 256-325 18-79 (83)
160 1gmj_A ATPase inhibitor; coile 38.7 79 0.0027 25.2 6.2 27 293-319 51-77 (84)
161 4dk0_A Putative MACA; alpha-ha 38.2 1.3E+02 0.0045 27.3 8.7 85 226-322 67-151 (369)
162 1lwu_C Fibrinogen gamma chain; 38.1 67 0.0023 30.8 6.9 38 291-328 17-54 (323)
163 1y1u_A Signal transducer and a 37.5 3.7E+02 0.013 27.9 13.3 53 213-265 10-62 (585)
164 2dq0_A Seryl-tRNA synthetase; 37.4 1.1E+02 0.0036 30.4 8.4 33 289-321 72-104 (455)
165 3nmd_A CGMP dependent protein 37.3 1.4E+02 0.0049 23.0 7.5 42 218-259 22-63 (72)
166 3qwe_A GMIP, GEM-interacting p 37.1 1.5E+02 0.005 27.9 9.0 73 259-331 146-226 (279)
167 1nkp_B MAX protein, MYC proto- 37.0 1.3E+02 0.0045 22.6 9.1 64 253-320 18-81 (83)
168 3he5_B Synzip2; heterodimeric 36.6 1.1E+02 0.0039 21.8 6.2 36 291-326 8-43 (52)
169 4dzo_A Mitotic spindle assembl 36.2 55 0.0019 27.2 5.3 38 293-330 4-41 (123)
170 2fxo_A Myosin heavy chain, car 36.1 1.8E+02 0.0061 23.8 13.5 38 290-327 80-117 (129)
171 1kd8_A GABH AIV, GCN4 acid bas 35.9 75 0.0026 21.7 4.9 28 289-316 4-31 (36)
172 3gpv_A Transcriptional regulat 35.5 51 0.0018 27.4 5.1 43 283-325 92-134 (148)
173 1b22_A DNA repair protein RAD5 35.2 24 0.00081 29.0 2.9 47 11-58 35-82 (114)
174 1nlw_A MAD protein, MAX dimeri 35.1 1.1E+02 0.0037 23.5 6.4 44 282-325 36-79 (80)
175 2zdi_C Prefoldin subunit alpha 35.0 92 0.0032 25.9 6.6 61 199-265 81-141 (151)
176 3ghg_B Fibrinogen beta chain; 34.9 3.6E+02 0.012 27.3 11.8 106 219-327 81-190 (461)
177 1jnm_A Proto-oncogene C-JUN; B 34.5 68 0.0023 23.2 5.0 29 295-323 24-52 (62)
178 2b9c_A Striated-muscle alpha t 34.5 2.1E+02 0.0073 24.3 13.7 92 219-325 28-119 (147)
179 4abm_A Charged multivesicular 34.3 66 0.0023 24.8 5.1 38 293-330 6-43 (79)
180 1jnm_A Proto-oncogene C-JUN; B 34.3 50 0.0017 24.0 4.2 39 284-322 20-58 (62)
181 3ljm_A Coil Ser L9C; de novo d 34.3 68 0.0023 20.9 4.3 21 291-311 6-26 (31)
182 2w6a_A ARF GTPase-activating p 34.2 1.2E+02 0.0039 23.0 6.2 41 290-330 17-57 (63)
183 1kd8_B GABH BLL, GCN4 acid bas 33.3 1.1E+02 0.0037 21.0 5.3 25 289-313 4-28 (36)
184 1q08_A Zn(II)-responsive regul 33.1 92 0.0031 23.4 5.8 59 252-317 12-70 (99)
185 2f1m_A Acriflavine resistance 33.0 1.2E+02 0.004 26.6 7.2 24 215-238 53-76 (277)
186 3p8c_E Probable protein brick1 32.7 53 0.0018 25.7 4.3 28 290-317 42-69 (75)
187 2pnv_A Small conductance calci 32.6 1.1E+02 0.0037 21.5 5.5 31 295-325 11-41 (43)
188 1zxa_A CGMP-dependent protein 32.6 81 0.0028 24.0 5.2 42 284-325 9-50 (67)
189 4fla_A Regulation of nuclear P 32.6 39 0.0013 29.1 3.9 14 216-229 23-36 (152)
190 1hjb_A Ccaat/enhancer binding 32.2 1.4E+02 0.0047 23.6 6.7 53 221-278 35-87 (87)
191 1t3j_A Mitofusin 1; coiled coi 32.2 1.5E+02 0.0052 24.0 7.1 27 284-310 45-71 (96)
192 3pp5_A BRK1, protein brick1; t 32.1 46 0.0016 25.9 3.9 27 291-317 43-69 (73)
193 2l5g_B Putative uncharacterize 31.8 1E+02 0.0034 21.8 5.1 28 289-316 12-39 (42)
194 3fse_A Two-domain protein cont 31.5 96 0.0033 29.9 6.9 16 214-229 235-250 (365)
195 1gmj_A ATPase inhibitor; coile 31.5 1.4E+02 0.0049 23.7 6.7 29 299-327 50-78 (84)
196 4dyl_A Tyrosine-protein kinase 30.2 3.7E+02 0.013 25.6 11.4 86 218-317 305-390 (406)
197 3iv1_A Tumor susceptibility ge 30.2 1.5E+02 0.0051 23.2 6.5 55 245-314 20-74 (78)
198 2lw1_A ABC transporter ATP-bin 30.0 1.7E+02 0.0057 22.4 6.9 21 289-309 25-45 (89)
199 1q08_A Zn(II)-responsive regul 29.9 48 0.0016 25.0 3.7 29 298-326 37-65 (99)
200 4doh_A Interleukin-20; IL10 fa 29.8 49 0.0017 28.4 4.1 66 213-278 75-142 (153)
201 3gwk_C SAG1039, putative uncha 29.7 1.7E+02 0.0058 21.6 11.2 90 215-328 8-97 (98)
202 3ghg_B Fibrinogen beta chain; 29.6 4.6E+02 0.016 26.5 12.3 102 218-322 91-192 (461)
203 2akf_A Coronin-1A; coiled coil 29.5 1.2E+02 0.0039 20.1 4.8 27 290-316 3-29 (32)
204 3viq_B Mating-type switching p 29.2 39 0.0013 26.9 3.1 23 290-312 5-27 (85)
205 2v66_B Nuclear distribution pr 29.0 2E+02 0.0069 23.7 7.5 34 231-264 37-70 (111)
206 2ke4_A CDC42-interacting prote 28.7 2.2E+02 0.0077 22.7 9.8 26 226-251 19-44 (98)
207 1kd8_B GABH BLL, GCN4 acid bas 28.6 1.1E+02 0.0037 20.9 4.7 29 293-321 1-29 (36)
208 2v71_A Nuclear distribution pr 28.6 3.2E+02 0.011 24.4 13.0 23 302-324 90-112 (189)
209 3tnu_B Keratin, type II cytosk 28.5 2.4E+02 0.0081 22.9 12.8 31 232-262 39-69 (129)
210 4afl_A P29ING4, inhibitor of g 28.3 2.1E+02 0.0072 22.2 8.1 32 217-248 17-48 (104)
211 1wcn_A Transcription elongatio 28.3 53 0.0018 24.5 3.6 43 13-56 19-62 (70)
212 3swk_A Vimentin; cytoskeleton, 28.3 2.1E+02 0.0071 22.2 7.1 31 233-263 4-34 (86)
213 1jcd_A Major outer membrane li 27.9 1.6E+02 0.0056 21.2 6.0 38 288-325 6-43 (52)
214 1kd8_A GABH AIV, GCN4 acid bas 27.5 81 0.0028 21.6 3.9 30 294-323 2-31 (36)
215 2oxj_A Hybrid alpha/beta pepti 27.4 1E+02 0.0036 20.8 4.4 25 294-318 2-26 (34)
216 1nkp_A C-MYC, MYC proto-oncoge 27.2 2.2E+02 0.0074 22.0 10.8 47 274-320 40-86 (88)
217 2wq1_A General control protein 27.2 1.4E+02 0.0048 20.1 5.0 23 289-311 3-25 (33)
218 2p22_A Suppressor protein STP2 27.0 3.3E+02 0.011 24.0 10.8 43 287-329 50-95 (174)
219 3ljm_A Coil Ser L9C; de novo d 26.8 1.1E+02 0.0037 19.9 4.3 23 297-319 5-27 (31)
220 1r8d_A Transcription activator 26.7 78 0.0027 24.6 4.5 30 287-316 76-105 (109)
221 3he4_A Synzip6; heterodimeric 26.6 1.4E+02 0.005 21.6 5.4 30 285-314 23-52 (56)
222 1d7m_A Cortexillin I; coiled-c 26.5 1.5E+02 0.0051 24.2 6.0 41 290-330 22-62 (101)
223 3fpp_A Macrolide-specific effl 26.5 2.2E+02 0.0075 25.6 8.1 40 226-265 66-105 (341)
224 2jee_A YIIU; FTSZ, septum, coi 26.1 2.2E+02 0.0075 22.4 6.8 44 288-331 29-79 (81)
225 1u89_A Talin 1, talin; 4-helix 25.8 34 0.0012 29.4 2.3 22 38-59 94-115 (139)
226 2yy0_A C-MYC-binding protein; 25.7 1.4E+02 0.0049 21.4 5.3 29 295-323 21-49 (53)
227 1dh3_A Transcription factor CR 25.6 50 0.0017 23.8 2.9 25 286-310 22-46 (55)
228 3cve_A Homer protein homolog 1 25.6 2.2E+02 0.0074 21.9 6.6 26 291-316 19-44 (72)
229 3u06_A Protein claret segregat 25.6 1.7E+02 0.006 28.5 7.6 45 219-263 14-58 (412)
230 1r8e_A Multidrug-efflux transp 25.2 1.5E+02 0.0051 25.9 6.5 37 285-321 78-114 (278)
231 4etp_A Kinesin-like protein KA 24.8 1.1E+02 0.0037 29.8 6.0 38 287-324 11-48 (403)
232 1deq_A Fibrinogen (alpha chain 24.7 5.2E+02 0.018 25.6 12.4 29 218-246 70-98 (390)
233 2e7s_A RAB guanine nucleotide 24.5 1.2E+02 0.0042 25.9 5.5 20 306-325 95-114 (135)
234 3rrk_A V-type ATPase 116 kDa s 24.5 4.1E+02 0.014 24.3 11.8 34 218-251 95-128 (357)
235 3haj_A Human pacsin2 F-BAR; pa 24.4 5E+02 0.017 25.3 12.9 31 296-326 206-236 (486)
236 3err_A Fusion protein of micro 24.4 5.6E+02 0.019 25.9 13.6 36 297-332 177-212 (536)
237 3l4f_A RHO guanine nucleotide 24.0 2.3E+02 0.0079 21.3 6.3 49 286-334 7-55 (61)
238 2lpe_A Kinase suppressor of RA 23.9 59 0.002 28.4 3.5 55 3-60 88-147 (149)
239 3w03_C DNA repair protein XRCC 23.8 1.4E+02 0.0049 26.6 6.1 39 286-324 145-183 (184)
240 1go4_E MAD1 (mitotic arrest de 23.6 1.4E+02 0.0048 24.3 5.5 31 294-324 13-43 (100)
241 2ve7_A Kinetochore protein HEC 23.4 71 0.0024 30.1 4.3 31 285-315 184-214 (315)
242 2dq3_A Seryl-tRNA synthetase; 23.2 1.2E+02 0.004 29.7 5.9 32 290-321 72-103 (425)
243 2dgc_A Protein (GCN4); basic d 23.2 1.2E+02 0.004 22.4 4.5 27 295-321 32-58 (63)
244 2wuj_A Septum site-determining 23.1 84 0.0029 22.6 3.7 38 278-315 19-56 (57)
245 2yo3_A General control protein 23.0 1.4E+02 0.0049 28.2 6.2 34 298-331 214-247 (268)
246 1u9l_A Transcription elongatio 23.0 95 0.0033 23.3 4.1 54 4-57 8-62 (70)
247 3qh9_A Liprin-beta-2; coiled-c 23.0 2.4E+02 0.0083 22.3 6.5 37 289-325 22-58 (81)
248 2x3v_A Syndapin I, protein kin 23.0 4.2E+02 0.014 23.9 12.0 26 299-324 207-232 (337)
249 3m9b_A Proteasome-associated A 22.8 1.1E+02 0.0036 28.8 5.2 40 288-327 56-95 (251)
250 1am9_A Srebp-1A, protein (ster 22.6 2.2E+02 0.0076 21.5 6.2 39 281-319 38-76 (82)
251 3cvf_A Homer-3, homer protein 22.3 73 0.0025 25.0 3.4 17 299-315 19-35 (79)
252 3viq_B Mating-type switching p 22.2 92 0.0031 24.8 4.0 27 295-321 3-29 (85)
253 1ykh_B RNA polymerase II holoe 21.9 2.6E+02 0.0089 23.2 7.0 44 288-331 87-130 (132)
254 2cme_A ORF-9B, ORF13, hypothet 21.8 41 0.0014 26.0 1.8 29 150-178 18-46 (78)
255 1zxa_A CGMP-dependent protein 21.3 1.3E+02 0.0045 22.9 4.6 47 213-259 9-55 (67)
256 1a93_B MAX protein, coiled coi 21.3 1.5E+02 0.005 20.0 4.2 28 221-248 6-33 (34)
257 3twe_A Alpha4H; unknown functi 21.1 1.3E+02 0.0046 19.0 3.8 22 218-239 4-25 (27)
258 1t3j_A Mitofusin 1; coiled coi 20.9 3.3E+02 0.011 22.0 7.8 44 219-265 33-76 (96)
259 3viq_A SWI5-dependent recombin 20.8 2.6E+02 0.009 23.2 6.8 49 227-278 5-54 (122)
260 1ez3_A Syntaxin-1A; three heli 20.6 3E+02 0.01 21.4 12.9 30 280-309 48-77 (127)
261 3cve_A Homer protein homolog 1 20.6 2.4E+02 0.0083 21.6 6.0 31 290-320 4-34 (72)
262 3mq7_A Bone marrow stromal ant 20.5 3.9E+02 0.013 22.5 13.5 42 287-328 58-99 (121)
No 1
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.78 E-value=3e-18 Score=139.32 Aligned_cols=108 Identities=17% Similarity=0.276 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKI 302 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerI 302 (338)
.++++..++..++++++.+.+|+..++++++++++|.+||+.||+|++||++||+|||..|+++++..|+++++.++.+|
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i 86 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 34455556666999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 303 KDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 303 K~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+.|+++.+++++++++++.+|++++++.
T Consensus 87 ~~le~~~~~l~~~l~~lk~~l~~~~~~~ 114 (117)
T 2zqm_A 87 NALERQEKKLNEKLKELTAQIQSALRPP 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999764
No 2
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.78 E-value=1.2e-18 Score=140.01 Aligned_cols=104 Identities=16% Similarity=0.273 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIK 303 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK 303 (338)
++++..++..++++++.+.+|++.++++++++++|.+||+.||+|++||++||+|||..|+++++..|+++++.++.+|+
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34455555569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 304 DIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 304 ~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+|+++.+++++++++++.+|++++
T Consensus 83 ~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999865
No 3
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=99.56 E-value=1.2e-15 Score=118.95 Aligned_cols=61 Identities=34% Similarity=0.489 Sum_probs=58.2
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~ 62 (338)
..+|+.|+|++|.+.|+.|||+++++|++|.++||.+|||++|+||+|||.|++.|++.++
T Consensus 16 ~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~~~ 76 (78)
T 1v38_A 16 QEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS 76 (78)
T ss_dssp HHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999999999999999999998665
No 4
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=8.5e-14 Score=113.09 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=57.1
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||+++++|..|.++||.+|||+++.||+|||.|++.|+...
T Consensus 27 ~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~~ 86 (97)
T 2dl0_A 27 SDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPP 86 (97)
T ss_dssp HHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHccc
Confidence 468999999999999999999999999999999999999999999999999999998754
No 5
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=99.38 E-value=1.8e-13 Score=109.20 Aligned_cols=57 Identities=28% Similarity=0.381 Sum_probs=54.7
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~ 58 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+
T Consensus 30 ~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 30 SAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp HHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 568999999999999999999999999999999999999999999999999999874
No 6
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=99.36 E-value=2.3e-13 Score=107.57 Aligned_cols=56 Identities=27% Similarity=0.374 Sum_probs=53.7
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L 57 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.|.||+|||.|++.|
T Consensus 27 ~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~l 82 (82)
T 3hil_A 27 SEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82 (82)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999864
No 7
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=99.36 E-value=2.4e-13 Score=108.28 Aligned_cols=58 Identities=16% Similarity=0.336 Sum_probs=55.1
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.|.||+|||.|++.|+.
T Consensus 25 ~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr~ 82 (86)
T 3kka_C 25 SEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 82 (86)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999865
No 8
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.34 E-value=4e-13 Score=104.92 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=57.2
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus 11 ~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~~~ 70 (81)
T 1ucv_A 11 GDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQL 70 (81)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999754
No 9
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=99.34 E-value=4e-13 Score=107.81 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=55.7
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.|.||+|||.|++.|+.
T Consensus 29 ~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr~ 86 (90)
T 3h8m_A 29 GEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRA 86 (90)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999875
No 10
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=99.32 E-value=5.6e-13 Score=103.85 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=56.3
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+..
T Consensus 15 ~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 15 DEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999863
No 11
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.32 E-value=5e-13 Score=106.82 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=57.1
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus 19 ~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~ 78 (91)
T 1x40_A 19 KDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM 78 (91)
T ss_dssp HHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhc
Confidence 358999999999999999999999999999999999999999999999999999999754
No 12
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.7e-13 Score=105.09 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=56.9
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus 16 ~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~~~ 75 (88)
T 2e8n_A 16 SEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQV 75 (88)
T ss_dssp HHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHhh
Confidence 458999999999999999999999999999999999999999999999999999999643
No 13
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=99.31 E-value=3.9e-13 Score=105.72 Aligned_cols=60 Identities=15% Similarity=0.305 Sum_probs=56.8
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+..-
T Consensus 20 ~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~~~ 79 (82)
T 2kso_A 20 SEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQV 79 (82)
T ss_dssp HHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999998643
No 14
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=99.31 E-value=6.7e-13 Score=106.36 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=56.3
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+..
T Consensus 30 ~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~~ 88 (94)
T 1b0x_A 30 GDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQ 88 (94)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998853
No 15
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.3e-13 Score=102.90 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHh--hcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESF--CEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~--~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.|||++|.+.|..|||+++++| ..|.++||.+|||+.+.||+|||.|++.|+..
T Consensus 16 ~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~~ 76 (80)
T 2eam_A 16 GQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSG 76 (80)
T ss_dssp HHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999 89999999999999999999999999999864
No 16
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=106.32 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=59.3
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDE 65 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~ 65 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+.......
T Consensus 30 ~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~~~~p 93 (100)
T 2kg5_A 30 AVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDP 93 (100)
T ss_dssp HHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCCCSCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcccCCC
Confidence 4689999999999999999999999999999999999999999999999999999997655444
No 17
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=107.58 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=57.1
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhh--cCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFC--EIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~--~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~ 62 (338)
..+|+.|||++|.+.|..|||++++++. .|.++||.+|||+.+.||+|||.|++.|+....
T Consensus 33 ~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~~~~ 95 (101)
T 2lmr_A 33 GEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKVKA 95 (101)
T ss_dssp HHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999987 999999999999999999999999999987543
No 18
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=102.46 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=54.5
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||.|++.|..|.++||.+|||+.+.||+|||.|++.|+..-
T Consensus 19 ~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~ 78 (83)
T 2qkq_A 19 GEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQA 78 (83)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC----
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999988643
No 19
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=104.33 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=57.3
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus 26 ~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~ 85 (99)
T 2eao_A 26 DDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQI 85 (99)
T ss_dssp HHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999999754
No 20
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=99.20 E-value=5.8e-12 Score=102.58 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=55.7
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHh--hcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESF--CEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~--~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.|||++|.+.|..|||++++++ ..|.++||.+|||+.+.||+|||.|++.|++
T Consensus 26 ~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~ 85 (103)
T 2ke7_A 26 GQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK 85 (103)
T ss_dssp THHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999 7999999999999999999999999999985
No 21
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.19 E-value=5.4e-12 Score=108.75 Aligned_cols=59 Identities=29% Similarity=0.369 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.|||++|.+.|..|||++++.+..|.++||.+|||+.+.||+|||.|++.|++.
T Consensus 83 ~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 83 AVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999875
No 22
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.11 E-value=2.5e-11 Score=104.63 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.|||++|.+.|..|||+ ++.|..|.++||.+|||++|.||+|||.|++.|+..+
T Consensus 14 ~~WL~~lgL~~Y~~~F~~~g~d-~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~~~ 72 (149)
T 3sei_A 14 SQWLTAFQLQLYAPNFISAGYD-LPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSIPD 72 (149)
T ss_dssp HHHHHTTTCGGGHHHHHHTTCC-HHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHCCcHHHHHHHHHcCCC-HHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Confidence 3579999999999999999999 9999999999999999999999999999999988753
No 23
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=99.09 E-value=1.7e-11 Score=104.96 Aligned_cols=59 Identities=22% Similarity=0.402 Sum_probs=56.3
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhh--cCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFC--EIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~--~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.|||++|.+.|..|||+++++|. .|.++||.+|||++|.||+||+.|++.|+..
T Consensus 18 ~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L~~~ 78 (148)
T 2kiv_A 18 GQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM 78 (148)
T ss_dssp HHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHCSCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999998 9999999999999999999999999999875
No 24
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=88.66 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=53.0
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..||+.|||.+|.+.|..||| |++.+..|.++||.+|||+ +.||+|||.|++.++.
T Consensus 6 ~~wL~~lgL~~Y~~~F~~~~i-d~e~l~~lt~~DL~~lGI~-~G~RkkIl~ai~~~~~ 61 (74)
T 3k1r_B 6 ETFLASLHMEDFAALLRQEKI-DLEALMLCSDLDLRSISVP-LGPREKILGAVRRRRQ 61 (74)
T ss_dssp HHHHHTTTCGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCc-CHHHHhHCCHHHHHHcCCC-cchHHHHHHHHHHHHH
Confidence 468999999999999999999 5999999999999999999 9999999999998775
No 25
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=98.93 E-value=3.6e-10 Score=90.82 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=55.4
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~ 62 (338)
..||.+|++++|.+.|+.|||..+|.|.+|..++|.||||+...||.|||.||..|+....
T Consensus 19 ~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~~~ 79 (85)
T 1ow5_A 19 QLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR 79 (85)
T ss_dssp HHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999999999999999999999999999987443
No 26
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.91 E-value=3.3e-10 Score=96.99 Aligned_cols=54 Identities=31% Similarity=0.439 Sum_probs=51.7
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQ 55 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~ 55 (338)
..+|+.|||++|.+.|..|||++++.|..|.++|| .++||+.+.||+|||.|++
T Consensus 92 ~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~ 146 (148)
T 2kiv_A 92 AEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG 146 (148)
T ss_dssp HHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHh
Confidence 46899999999999999999999999999999997 8999999999999999986
No 27
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=98.80 E-value=2.1e-09 Score=83.50 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=53.4
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.+||++|.+.|..|||+... |..|.++||.+|||+.+.||.||+.|++.|+..
T Consensus 16 ~~WL~~lgl~~Y~~~F~~~~idg~~-Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~ 73 (81)
T 3bq7_A 16 AAWLEHLSLCEYKDIFTRHDIRGSG-LLHLERRDLKDLGVTKVGHMKRILCGIKELSRS 73 (81)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCHHH-HTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCCHHHHHHHHHcCCCHHH-HCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998877 679999999999999999999999999998764
No 28
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=98.78 E-value=2.8e-09 Score=81.89 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=52.1
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.+||.+|.+.|..||++-. .|..|.++||.+|||+.+.||.||+.|++.|+...
T Consensus 11 ~~WL~~lgl~~Y~~~F~~~~idg~-~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~~~ 69 (76)
T 2f3n_A 11 GDWLESIHLGEHRDRFEDHEIEGA-HLPALTKEDFVELGVTRVGHRENIERALRQLDGSR 69 (76)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCGG-GGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC----
T ss_pred HHHHHHCCCHHHHHHHHHcCCCHH-HHccCCHHHHHHcCCCChhHHHHHHHHHHHHHHHH
Confidence 468999999999999999999887 78899999999999999999999999999988643
No 29
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=98.73 E-value=5.4e-09 Score=80.34 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCcc
Q psy14557 2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDED 66 (338)
Q Consensus 2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~ 66 (338)
..+|+.+ ||++|.+.|..|+++ -+.|-.|.++||.+|||+.+.||.||+.|++.|+....+.+.
T Consensus 13 ~~WL~~l~~gl~~Y~~~F~~~~i~-G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~~l~~ 78 (80)
T 3bs5_B 13 VDWMKGLDDCLQQYIKNFEREKIS-GDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGLET 78 (80)
T ss_dssp HHHHHTSCGGGGGGHHHHHHHTCC-HHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhhhHHHHHHHHHHcCCC-HHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccc
Confidence 3578888 699999999999996 788889999999999999999999999999999876555443
No 30
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=98.70 E-value=8.5e-09 Score=78.15 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=52.9
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.+||.+|.+.|..|+++- +.|-.|.++||.+|||+.+.||.||+.|++.|+.
T Consensus 13 ~~WL~~~gl~~y~~~F~~~~i~g-~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~ 69 (74)
T 2gle_A 13 SHWLVGLSLDQYVSEFSAQNISG-EQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKM 69 (74)
T ss_dssp HHHHHHTTTHHHHHHHTTTTCCH-HHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCH-HHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999977 7777999999999999999999999999999874
No 31
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=98.69 E-value=2.5e-07 Score=77.09 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCch--------------------hhhhhcc-ccc
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ--PTTN--------------------TYESVGR-MFI 280 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP--eDTk--------------------VYKSVGR-MFV 280 (338)
+.+|+..+...+++++.+.+++++++..+.+.+.+.+.|+.|+ ++.. ||-.||- .||
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v 82 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence 3556666666899999999999999999999999999999987 5555 6667994 999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 281 KTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 281 ltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..+.++.++-|+++++.++..++.++++...+..++..++..|+++++.
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999864
No 32
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=98.67 E-value=8.1e-08 Score=82.17 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccC-CCchhhhhhc--------------------
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENF---KKNKHHTQLTLTEIKRLQ-PTTNTYESVG-------------------- 276 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~Qiqql---ErelR~aeLTlkELekLP-eDTkVYKSVG-------------------- 276 (338)
.+.+.+++..+...+++++.+.++++++ ...+.++..++++|+.++ ++..+|.++|
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG 87 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVG 87 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeC
Confidence 3445555555666999999999999999 999999999999999999 8999999977
Q ss_pred -ccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 277 -RMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 277 -RMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
..||..+.++.++-|+++++.++..++.+++..+.++.++...+..|+++++....
T Consensus 88 ~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 88 SGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999976544
No 33
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2e-08 Score=77.92 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=53.7
Q ss_pred hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.+ ||++|.+.|..|+++ -+.|-.|.++||.+|||+.+.||.+|+.|++.|+...
T Consensus 17 ~~WL~~l~~gl~~Y~~~F~~~~I~-G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~ 77 (83)
T 2ean_A 17 VDWMKGLDDCLQQYIKNFEREKIS-GDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALN 77 (83)
T ss_dssp HHHHTTSCGGGTTTHHHHHHHTCC-HHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHCCCC-HHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 3578888 699999999999996 7888899999999999999999999999999998643
No 34
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=98.56 E-value=2.5e-08 Score=76.93 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=54.6
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.|++.+|.+.|...||.+++...+|.-+||..+||+. +||+|||.+++.|+.
T Consensus 8 ~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~-ghqkkIl~siq~lr~ 64 (69)
T 2y9u_A 8 VSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQ 64 (69)
T ss_dssp HHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCCh-hhHHHHHHhHHHHHh
Confidence 468999999999999999999999999999999999999998 999999999999874
No 35
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=98.47 E-value=1e-07 Score=72.85 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=52.8
Q ss_pred hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.+ |+.+|.+.|..|+++- +.|-.|.++||.+|||+.+.||.+|+.|++.|+.
T Consensus 12 ~~WL~~~~~gl~~y~~~F~~~~I~G-~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~ 70 (78)
T 3bs7_A 12 LKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRL 70 (78)
T ss_dssp HHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHCCCCH-HHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHh
Confidence 3578886 9999999999999987 8888999999999999999999999999999875
No 36
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=98.46 E-value=5.2e-08 Score=77.46 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=55.3
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.|++.+|.+.|...||.+++...+|.-+||..+||+. +||+|||.+++.|+..
T Consensus 10 ~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~-gHqkkIl~siq~lr~~ 67 (82)
T 2y9t_A 10 VSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQL 67 (82)
T ss_dssp HHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCCh-hhHHHHHhhHHHHHHH
Confidence 468999999999999999999999999999999999999998 9999999999998863
No 37
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=98.44 E-value=1.1e-07 Score=76.78 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=50.1
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
.+|+.|+|.+|++.|..++| +.|..|.|+||.++||+...||+|||.|++.|++.
T Consensus 23 ~WL~sLrLhKY~~~F~~~~~---~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 23 MWLKSLRLHKYSDALSGTPW---IELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp HHHHHTTCGGGHHHHTTSCH---HHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchhHHHHhcCCH---HHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHHH
Confidence 57899999999999998755 55779999999999999999999999999999863
No 38
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=98.35 E-value=2.6e-07 Score=75.67 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=53.8
Q ss_pred hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|+.+ |+.+|.+.|..|+++- +.+-.|.++||.+|||+.+.||.+|+.+++.|+.
T Consensus 32 ~~WL~~~~~gl~~Y~~~F~~~~I~G-~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~ 90 (106)
T 3bs5_A 32 LKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRL 90 (106)
T ss_dssp HHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHHcCccH-HHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 3688999 9999999999999998 8888999999999999999999999999999985
No 39
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=98.30 E-value=3.2e-07 Score=86.50 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=55.4
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~ 62 (338)
.+|+.|||.+|.+.|..||+| -+.+..|.++||.+|||+++.||.+|+.|++.|++...
T Consensus 97 ~WL~~IGL~QY~~~F~~~~iD-g~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~L~~~~~ 155 (265)
T 3tad_C 97 RWLDDIGLPQYKTQFDEGRVD-GRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNF 155 (265)
T ss_dssp HHHHHHTCGGGHHHHHHHTCC-HHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCcHHHHHHHHHcCCC-HHHhcccCHHHHHHcCCCcHHhHHHHHHHHHHHhhcCC
Confidence 579999999999999999999 58999999999999999999999999999999998644
No 40
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=98.28 E-value=2.9e-07 Score=76.05 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=50.2
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
.+|+.|+|.+|++.|..++| +.|-.|.|+||.++||+...+|+|||.|++.|++.
T Consensus 36 ~WLksLrLhKY~~~F~~~~~---~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~~ 90 (101)
T 2es6_A 36 MWLKSLRLHKYSDALSGTPW---IELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY 90 (101)
T ss_dssp HHHHTTTCCCTHHHHTTSCH---HHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCcchHHHHccCCH---HHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHHH
Confidence 57899999999999999866 55679999999999999999999999999999874
No 41
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.26 E-value=7.1e-07 Score=71.66 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=56.1
Q ss_pred hhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCcccCC
Q psy14557 3 KAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEES 69 (338)
Q Consensus 3 ~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~~~ 69 (338)
.+|+.| ++.+| .|..|++. -+.+-.|.++||.+|||+...||.+||.||+.|+..-.+.+.|+.
T Consensus 21 ~WL~~l~~~l~~Y--~F~~~~I~-G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~~~l~~e~l 86 (91)
T 1wwv_A 21 TWLRGLDDSLQDY--PFEDWQLP-GKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQTENS 86 (91)
T ss_dssp HHHHHHCHHHHTS--CHHHHCCC-HHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSCSSTTTC
T ss_pred HHHHhcCCccccc--cHHhcCcc-HHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHhhccchhcc
Confidence 578866 89999 79999995 888899999999999999999999999999999987666665553
No 42
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=98.17 E-value=1.2e-06 Score=69.51 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=54.3
Q ss_pred hhhhhhhhh--hhhHhhhhhcCcccHHHhhcCCcccccc--cCCCChHHHHHHHHHHhhhhhcC
Q psy14557 2 SKAVDMELK--KEHMSVFVLNGYEDLESFCEIKEEDLNY--LKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 2 ~~~~e~i~L--~ey~s~~l~NGyddLe~~~~i~e~dL~e--lgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
..+|+.||+ .+|.+.|..| .-|-+.|-.|.++||.+ |||+...||+||+.|++.|+..-
T Consensus 26 ~~WL~~~gl~~~~Y~~~F~~~-~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~ 88 (91)
T 1v85_A 26 VLWLEQLGPWASLYRDRFLSE-RVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGP 88 (91)
T ss_dssp HHHHHHHCGGGHHHHHHHHHT-TCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHh-CCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 467999999 9999999998 78899999999999998 99999999999999999998643
No 43
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=9.3e-07 Score=71.59 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=53.2
Q ss_pred hhhhhhhhhhh--hHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 2 SKAVDMELKKE--HMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 2 ~~~~e~i~L~e--y~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..+|+.+||.+ |.+.|..|+.+-- .|-.|.++||.+|||....||.||+.|++.|+..
T Consensus 36 ~~WL~~lgl~~~~y~~~F~~~~I~G~-~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~ 95 (103)
T 2e8o_A 36 CSFLRRGGFEEPVLLKNIRENEITGA-LLPCLDESRFENLGVSSLGERKKLLSYIQRLVQI 95 (103)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTCCTT-TTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChHHHHHHHHHcCCCHH-HHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 46899999999 9999999999775 7779999999999999999999999999999864
No 44
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.4e-06 Score=73.75 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=50.0
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
.+|+.++|.+|.+.|...+| +.|..|.|+||.++||+...||+|||.|++.|++.
T Consensus 54 ~WL~sLrL~KY~~~F~~~~~---d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 54 MWLKSLRLHKYSDALSGTPW---IELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHHHTCHHHHHHHTTSCH---HHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHccCCH---HHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHhh
Confidence 57899999999999988755 56789999999999999999999999999998874
No 45
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=98.01 E-value=2.4e-06 Score=80.60 Aligned_cols=57 Identities=18% Similarity=0.045 Sum_probs=52.6
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCccccc-ccCCCChHHHHHHHHHHhhhhhc
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLN-YLKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~-elgI~dp~hR~rlL~Av~~L~~~ 60 (338)
..|+.+||.+|...|..|+++.-..+ .|.++||. +|||++|-||+||+.|++.|...
T Consensus 25 ~WLe~~GL~~Y~~~f~~n~~dG~~Ll-~lt~~dLe~eLGI~nplHRkKL~laI~el~~~ 82 (265)
T 3tad_C 25 SWLAEQGLGSYLSSGKHWIISGQTLL-QASQQDLEKELGIKHSLHRKKLQLALQALGSE 82 (265)
T ss_dssp HHHHHTTCCTTHHHHTTTCSCSHHHH-HSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCHHHHHHHHHHhCCchHHHH-hCCHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 46889999999999999999998855 99999995 99999999999999999999874
No 46
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=97.99 E-value=4.1e-06 Score=81.30 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHhhhhhcCCC
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQVMHEYESP 63 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~~L~~~~~~ 63 (338)
..|+.|||.||.+.|..|++ |-+.+-.+...|| ..|||+++-||++|+.|+++|+....+
T Consensus 168 ~WL~dIGLpQY~~~F~~~~V-DgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~~~d 228 (334)
T 3tac_B 168 EWLPSLGLPQYRSYFMECLV-DARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYD 228 (334)
T ss_dssp THHHHTTCGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred hhccccChHHhHHHHHhcCc-chhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhcCCC
Confidence 57899999999999999999 6699999999999 799999999999999999999986554
No 47
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=97.98 E-value=2.8e-06 Score=75.99 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=50.2
Q ss_pred hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61 (338)
Q Consensus 3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~ 61 (338)
.+|+.|+|.+|++.|...||+ .|..|.|+||.++||+ ..||+|||.|++.|++-.
T Consensus 12 ~WLksLrLhKY~~~F~~~~~e---~~~~LTdedL~~~GVT-~GARrKIL~aIq~Lrer~ 66 (173)
T 1oxj_A 12 LWLKSLRLHKYIELFKNMTYE---EMLLITEDFLQSVGVT-KGASHKLALCIDKLKERA 66 (173)
T ss_dssp HHHHHTTCGGGGGGGTTCCHH---HHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchhHHHHccCCHH---HHHhcCHHHHHHCCCc-hHHHHHHHHHHHHHHHHh
Confidence 578999999999999999887 5689999999999999 599999999999999744
No 48
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=97.50 E-value=3.5e-05 Score=62.50 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=51.9
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccc--cCCCChHHHHHHHHHHhhhhhcCC
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNY--LKILNPEHRAKILAAVQVMHEYES 62 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~e--lgI~dp~hR~rlL~Av~~L~~~~~ 62 (338)
..+|+.+|+.+|.+.| .| -|=+.|-.|.++||.+ |||....||+||+.|++.|+..-.
T Consensus 26 ~~WL~~~Gl~~Y~~~F-~~--IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~ 85 (97)
T 2d8c_A 26 ADWLLENAMPEYCEPL-EH--FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHH 85 (97)
T ss_dssp HHHHHHTTCTTTTTTT-TT--CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHH-Hc--CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhH
Confidence 3678999999999999 67 7778888999999999 999999999999999999986443
No 49
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=97.13 E-value=0.00032 Score=55.71 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=49.0
Q ss_pred hhhhhhh-hhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDME-LKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i-~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..+|..+ |+.+|...|..|.-+ -+.|-.|.++|| .+||| .-.+|.||+.|++.|+.
T Consensus 23 ~~wL~~l~gl~~y~~~F~~~~Id-G~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~ 80 (89)
T 1kw4_A 23 SNFIRELPGCQDYVDDFIQQEID-GQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKE 80 (89)
T ss_dssp HHHHHTSTTCGGGHHHHHHTTCC-HHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCcChHHHHHHHHHhCcc-HHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 3688899 999999999999864 566668999999 89999 69999999999999875
No 50
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=96.96 E-value=0.00053 Score=66.64 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=53.7
Q ss_pred hhhh-hhhhh-hHhhhhhcCcccHHHhhcCCccccc-ccCCCChHHHHHHHHHHhhhhhcCCCCc
Q psy14557 4 AVDM-ELKKE-HMSVFVLNGYEDLESFCEIKEEDLN-YLKILNPEHRAKILAAVQVMHEYESPDE 65 (338)
Q Consensus 4 ~~e~-i~L~e-y~s~~l~NGyddLe~~~~i~e~dL~-elgI~dp~hR~rlL~Av~~L~~~~~~~~ 65 (338)
.|+. +||++ |...|..|..+- ..+..+.++||. +|||.+|-||+||+-|++.+....+++.
T Consensus 47 WLe~~iGmp~~Yv~~~r~nvkSG-~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~~sp~~ 110 (334)
T 3tac_B 47 WLELWLGMPAWYVAACRANVKSG-AIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSA 110 (334)
T ss_dssp HHHHTTCCCHHHHHHHHHHCCSH-HHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhcChHHHHHHHHHHccch-HHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCC
Confidence 4677 89987 999999999998 567789999995 9999999999999999999988766554
No 51
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=95.84 E-value=0.093 Score=42.24 Aligned_cols=88 Identities=11% Similarity=0.233 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 233 DTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 233 eTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyL 312 (338)
+++-.+++++.-.++++-..++.+.+.-=+..+..+.++|++....+|...|++.++.++--.=..+-+|.+|.++++.+
T Consensus 8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekei 87 (99)
T 3aei_A 8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEI 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666777778888888888899999999999999999999999999999888888888999999988888
Q ss_pred HHHHHHHH
Q psy14557 313 LVPALKIA 320 (338)
Q Consensus 313 EKqLeelQ 320 (338)
.+++..+.
T Consensus 88 me~ls~l~ 95 (99)
T 3aei_A 88 MEELSKLR 95 (99)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhc
Confidence 77776543
No 52
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=95.34 E-value=0.29 Score=39.05 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEK 301 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEer 301 (338)
|.+.++..+..+...++..+...+..++.++...+..+.++.... + +==-||.-.=......++++.+.+++.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g-~--~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~ 79 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAK-G--KCPVCGRELTDEHREELLSKYHLDLNNSKNT 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-E--ECTTTCCEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C--CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666666666666666667776521 1 1111233222223457888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 302 IKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
+..|+.+...+++.++.+...++++++.
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 107 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEIKRLTPL 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888855543
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=94.46 E-value=0.038 Score=44.16 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE--IKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE--LekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
++...|..+|+++..+.++++.+..++...+..+.+..+...+ +-.+=. +||=..-.--+....++-++.+++.++
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG--~vfv~~~~~ea~~~L~~~~e~ie~~i~ 87 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVG--TLIVKTTKDKAVAELKEKIETLEVRLN 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEET--TEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhh--HHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777777777777777777666666655432 111112 222222233345555666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ 320 (338)
.++.+++.++++.+.+++.+.+..
T Consensus 88 ~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 88 ALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766543
No 54
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=94.29 E-value=0.041 Score=43.72 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=47.0
Q ss_pred hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557 2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQVMHEYES 62 (338)
Q Consensus 2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~~L~~~~~ 62 (338)
.+||+.+ |+.+|.+.|..|.-|= +.|-.|.+.|| .++||. -.+|.||..+++.|+..+.
T Consensus 23 ~~wl~~~~~g~~~y~~~F~~~eIDG-~aLL~Lt~~dl~~~mgik-lGpalKi~~~I~~lk~~~~ 84 (89)
T 1pk1_B 23 IQYIESNDNSLAVHGDLFRKHEIDG-KALLRLNSERMMKYMGLK-LGPALKICNLVNKVNGRDH 84 (89)
T ss_dssp HHHHHHHCGGGGGGHHHHHHTTCCH-HHHHTCCHHHHHHHSCCC-HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHccchHHHHHHHHHcCcCh-HHHhcCCHHHHHHccCCC-ccHHHHHHHHHHHHHcccc
Confidence 4688888 8999999999887654 44559999998 579996 8999999999999987654
No 55
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=93.98 E-value=0.021 Score=49.91 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=39.6
Q ss_pred hhhhh-hhhhhhHhhhhhcCcccHHHhhcCCccc----ccccCCCChHHHHHHH-HHHh
Q psy14557 3 KAVDM-ELKKEHMSVFVLNGYEDLESFCEIKEED----LNYLKILNPEHRAKIL-AAVQ 55 (338)
Q Consensus 3 ~~~e~-i~L~ey~s~~l~NGyddLe~~~~i~e~d----L~elgI~dp~hR~rlL-~Av~ 55 (338)
+.|.. ++|++|.+.|..|.-+=-... .|...+ +..|||.+|.||+||. .|..
T Consensus 88 ~WL~~~v~LpqY~~~Fr~~~IdG~~Lp-rL~~~~~~~L~~~LGI~~~~hR~Kl~lkald 145 (150)
T 2l5y_A 88 QWLIEFVELPQYEKNFRDNNVKGTTLP-RIAVHEPSFMISQLKISDRSHRQKLQLKALD 145 (150)
T ss_dssp HHHHHHTCCTTSHHHHHHHHCSSSTTT-TCCSSSCCSTTTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHcCCCHHHhh-hhhhcchHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45655 589999999999877755444 555544 5699999999999996 5544
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=93.29 E-value=0.21 Score=39.28 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE--IKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE--LekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
++.+.|..+|+++..+.++++.+..++...+..+.+..+...+ +-.+=.+.=|-+++ --+....+.-++.++++++
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~--~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAK--DELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccH--HHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888777777777665443 22222233333333 3345566667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLee 318 (338)
.++.+++.++++.+.+++.+.+
T Consensus 83 ~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777776653
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=93.21 E-value=1 Score=43.36 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.+.+.|++++...+.+|+.||.+.+.|+.+++++..+++++-
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577889999999999999999999999999999999998753
No 58
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.55 E-value=0.43 Score=52.27 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
.-+.+|+++++.+++++.++.+.++.++++.+++++.|++.+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv 1025 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666555555555433
No 59
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.98 E-value=0.095 Score=42.04 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=45.5
Q ss_pred Chhhhhhhhhhhh-HhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHh
Q psy14557 1 MSKAVDMELKKEH-MSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQ 55 (338)
Q Consensus 1 ~~~~~e~i~L~ey-~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~ 55 (338)
++++|..|||.+| .+.|..|+-|---. -+|.+++| +++|+ .+-|++||+..+.
T Consensus 23 Vs~~Lr~igL~e~vv~~F~~e~IDG~lL-~~L~ee~L~edf~l-s~Lq~kKi~~fI~ 77 (84)
T 2dkz_A 23 VSKSLRFIGLSEDVISFFVTEKIDGNLL-VQLTEEILSEDFKL-SKLQVKKIMQFIN 77 (84)
T ss_dssp HHHHGGGTCCCHHHHHHHHTTTCCHHHH-HHCCHHHHHHTSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHccchHHH-HhCCHHHHHhhcCC-CHHHHHHHHHHHh
Confidence 4689999999985 79999999876544 49999999 56999 8999999999874
No 60
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.94 E-value=2.3 Score=46.65 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
..+.++|++++..++++...|+.|...|+..+.+.++
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666666666666666654444444
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.56 E-value=6.2 Score=35.84 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhccCCCchhhhhhcc
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE-----------IKRLQPTTNTYESVGR 277 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE-----------LekLPeDTkVYKSVGR 277 (338)
+.+.+++.++..++.++..+..++..++++++..+.-..+ |..+ .+.+-|.++.+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-~~~kE~~aL~k 97 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-KSERELRSLNI 97 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHH
Confidence 3344444444444444444444444444444433333332 3333 25566666654
No 62
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.31 E-value=3.6 Score=37.40 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE 261 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE 261 (338)
+++...++...+.++..++..+..++..++..+..++...+.
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~ 64 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK 64 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555444433
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.30 E-value=1.6 Score=44.91 Aligned_cols=90 Identities=9% Similarity=0.013 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
.+.+.+.+|..++.+.++.-+.+.+....+.-.+|..+-...+++. + +.+|-++|+.++..+
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN------t------------ynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN------T------------YNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH------H------------HHHTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch------h------------HHHHHHHHHHHHHHH
Confidence 5566666666666666555555555555555444443333333322 2 345556777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+++|..--.+..-|+..++++..+|+.+
T Consensus 123 KekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 123 KRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666677777766666666654
No 64
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=90.23 E-value=0.12 Score=41.18 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=50.7
Q ss_pred hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
..||.++|+..|.+-|--.|++++--+-.+.=+||-++.|. -+||.||-.++..+++
T Consensus 10 ~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIp-e~~R~kIWk~l~e~~q 66 (80)
T 1dxs_A 10 VSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDLKQ 66 (80)
T ss_dssp HHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC-TTTHHHHHHHHHHC--
T ss_pred HHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHHhCCCC-HHHHHHHHhhHHHhcc
Confidence 46899999999999999999999999999999999999998 5689999988877654
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.16 E-value=1.6 Score=42.97 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 220 GDKAFAELQIKMMDTKQKLKIQDIQVE 246 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQQQLq~V~~Qiq 246 (338)
++..+.+++.++..+++.+......++
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333333
No 66
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=88.85 E-value=0.91 Score=32.14 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
.-+++.+|.++.+.+|+||.+||.|.+.|...++
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999998888877765
No 67
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=88.27 E-value=0.15 Score=44.48 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=40.1
Q ss_pred hhh-hhhhhhhhHhhhhhcCcccHHHhhcCCccc--c--cccCCCChHHHHHHH-HHHhh
Q psy14557 3 KAV-DMELKKEHMSVFVLNGYEDLESFCEIKEED--L--NYLKILNPEHRAKIL-AAVQV 56 (338)
Q Consensus 3 ~~~-e~i~L~ey~s~~l~NGyddLe~~~~i~e~d--L--~elgI~dp~hR~rlL-~Av~~ 56 (338)
+.| ..++|++|.+.|-.|.-+=..... |...+ + ..|||.++.||+||- .|...
T Consensus 88 ~WL~~~v~LpqY~~~Fr~~~I~G~~Lpr-La~~~~~~L~~~LgI~~~~hRqKl~lkald~ 146 (150)
T 2k60_A 88 QWLITYVELPQYEETFRKLQLSGHAMPR-LAVTNTTMTGTVLKMTDRSHRQKLQLKALDT 146 (150)
T ss_dssp HHHHHHHCCTTHHHHHHHHCCSTTHHHH-HSSCHHHHCSSCSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHcCCCHHHHHh-hccccHHHHHHhcCCCCHHHHHHHHHHHHhH
Confidence 345 445899999999999888766664 44443 3 899999999999994 66654
No 68
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.15 E-value=7.4 Score=29.87 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHC 333 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~ 333 (338)
..+++.+..+..+|..|+...+..+.++..++..|.+.-+..+.|
T Consensus 37 ~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~~~ 81 (81)
T 1ic2_A 37 KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDC 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC--
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456677777777777777778888888888888887766555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.92 E-value=12 Score=36.17 Aligned_cols=100 Identities=19% Similarity=0.069 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---chhh-------hhhccc-ccccCchHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPT---TNTY-------ESVGRM-FIKTPHPEVVVNLEKKV 295 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeD---TkVY-------KSVGRM-FVltdKdeI~eeLeEki 295 (338)
+|..-+..+++-+...++.....+.....+-+..+...--+. +..= +.+.++ =+.+..+...++++...
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW 437 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 344444455555555555555555555555555544332221 0000 001100 01223444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+...++|+.++++.+++++.+.+....+.++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 6666666666666666666666665555543
No 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=84.35 E-value=6.9 Score=42.86 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=14.7
Q ss_pred cceeEeeccccccccccCCCCC
Q psy14557 120 PNFHFVFDIFPGICRTSNQNDG 141 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~ 141 (338)
-+-|||.-|-|.--..++.-|.
T Consensus 676 t~phfvRCIkPN~~k~p~~fd~ 697 (1184)
T 1i84_S 676 TNPNFVRCIIPNHEKRAGKLDA 697 (1184)
T ss_dssp SEEEECCEECCCSSCCSSCCCH
T ss_pred cCCCceeeeCCCCcCCCCcccH
Confidence 3568988888876655555443
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.19 E-value=22 Score=31.54 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
+++.+|+.++..+..+++.+......++.....+++.|
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444444444444333
No 72
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.49 E-value=12 Score=45.73 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=35.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
.|+.+-+.+++++.+.++.+++..+.+.+.+++++++++++..++++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ 2056 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR 2056 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888777777777777777777777777766554
No 73
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=82.45 E-value=8.9 Score=30.26 Aligned_cols=96 Identities=8% Similarity=-0.002 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL-QPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL-PeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
..+.+.+.++..++..+++....+..++..++..+...... ... |-=......-++.-+......-+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~----g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~ 81 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA----KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLA 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888888888888877776442 222 2110111111112233345566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLe 317 (338)
.+..++..+++..+.|+.++.
T Consensus 82 ~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 82 KLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877776
No 74
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=81.57 E-value=26 Score=34.66 Aligned_cols=108 Identities=10% Similarity=0.025 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL--QPTTNTYESVGRMFIKTPHPEVVVNLEKKVK 296 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL--PeDTkVYKSVGRMFVltdKdeI~eeLeEkie 296 (338)
.|+..|...|..+...=+.|..+..+++.+..+......+.+..-.- ++....+..+.+ .. +..-+-+..|+..+.
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq-~s-kkml~~~~~~e~~~~ 101 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQ-KS-KKIIEEIIRYENTIL 101 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHH-HH-HHHHHHHHHTHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHH-HH-HHHHHHHHHHHHHhc
Confidence 67788888877776666777777777777777777666666666331 111122222211 00 001111222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
..+..|..|+.+.+.++.++++++..|.+++.
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 102 AHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555543
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.47 E-value=11 Score=36.83 Aligned_cols=31 Identities=3% Similarity=-0.005 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQL 257 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeL 257 (338)
++..+.+....++.+...+.+.++.++..+-
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~ 484 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHA 484 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555444444444443333
No 76
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.01 E-value=35 Score=34.49 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 220 GDKAFAELQIKMMDTK-------QKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 220 LqKaf~ELQ~KlieTQ-------QQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
+++.+.+|..++.++. +-++.+.......+.++.....+.++..
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~ 148 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 4444444444444443 3344455555555555555444444433
No 77
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=78.48 E-value=3.4 Score=33.79 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhh-hc-cc--------ccccC----------chH---HH
Q psy14557 232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYES-VG-RM--------FIKTP----------HPE---VV 288 (338)
Q Consensus 232 ieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKS-VG-RM--------FVltd----------Kde---I~ 288 (338)
.+.+.+++.+..+++.+..++...+-...|+.+.-+.-...+. -| .+ ||... ... +.
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE 83 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK 83 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence 3356666666667777777776666666666665433333321 11 11 11111 111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..+++-++-++.+++.|+++.+.+++.++...++++.+...
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777777777777666666665543
No 78
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=77.34 E-value=14 Score=37.36 Aligned_cols=30 Identities=17% Similarity=0.008 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 302 IKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+.|..+.+.|++++.+++++|.+++..+.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 142 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVG 142 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 555556666666666777777777776654
No 79
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.16 E-value=9.8 Score=41.70 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ 256 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ae 256 (338)
++++.+.+++.++...++.+..+..++..++.++..++
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444444
No 80
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.28 E-value=33 Score=29.06 Aligned_cols=103 Identities=8% Similarity=0.024 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQK--LKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLE 292 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQ--Lq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLe 292 (338)
.+.+.|+++...+-.++.++.+. ...+......+=..+..+ .|+-++... |...-.- ...+..-+.+|+
T Consensus 25 e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNia----dEl~k~~~~---~~~L~~~--l~~~~kE~~~lK 95 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIA----DDYFKAKKM---ADSLSLD--IENKDKEIYDLK 95 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHH--HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHH--HHHHHHHHHHHH
Confidence 45678999999999999988855 444433333322222211 111111100 0000000 001144455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.+...+..++..++++.+.|++++.++++++.++
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666554
No 81
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.33 E-value=33 Score=34.67 Aligned_cols=26 Identities=4% Similarity=0.027 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 301 KIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 301 rIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.|..|+...+.+..++.+++..+...
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555443
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.33 E-value=30 Score=35.77 Aligned_cols=46 Identities=9% Similarity=-0.068 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
.+|++.+.++|+...++.+.++.+..+++....+....+-+..|+.
T Consensus 67 NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S 112 (562)
T 3ghg_A 67 NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS 112 (562)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 4677777777777777777666666655554444445555555555
No 83
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.08 E-value=56 Score=29.36 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
..|..++-.++..-..|+++.-.....++..+..+..+|
T Consensus 105 ~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 105 EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444433
No 84
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.86 E-value=36 Score=33.80 Aligned_cols=90 Identities=9% Similarity=0.096 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
.+++.+.+|...+.+.++.-+.+.+-+..+...+|.. +....++..+|- ++.++|+.++..+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~------~~q~~dndn~~~------------e~s~eLe~~i~~l 125 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD------FAKANNNDNTFK------------QINEDLRSRIEIL 125 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHhhccchHHHH------------HHHHHHHHHHHHH
Confidence 5555555665555555555444444333333222222 222233344443 4555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+++|..---....|+..++++..+|+.|
T Consensus 126 k~~V~~q~~~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 126 RRKVIEQVQRINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6655544334444555544444444443
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.85 E-value=12 Score=36.13 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCAS 335 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a~ 335 (338)
.....+...++++.++++...+++-...+.++++++.+.++.++...+..|+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 3444666677888888888888888888888888888888888876655443
No 86
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=71.40 E-value=42 Score=27.66 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
..+..+.++.++.+..+.....|...+..++..+.++...|.++
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777788888888888888777777664
No 87
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=70.08 E-value=69 Score=32.38 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 302 IKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+.|..+.+.|++++.+++++|.+++.++.
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444555555666666666665543
No 88
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=69.49 E-value=50 Score=27.75 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.3
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 279 FIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIIL 313 (338)
Q Consensus 279 FVltdKdeI~eeLeEkieslEerIK~LEKQkeyLE 313 (338)
|.......+++++++-.+.++.+|+..++...+-+
T Consensus 68 ~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 68 FYKSQYQELASKYEDALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446777778888888888888887777776653
No 89
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=69.18 E-value=7.9 Score=27.39 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
++|-.+++..+.+|.+-+++...|+++++++++.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888888888888888877763
No 90
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=68.19 E-value=47 Score=32.92 Aligned_cols=30 Identities=3% Similarity=-0.042 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 302 IKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+.|..+.+.+++++.+++++|.+++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 78 SREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444555556666666666665554
No 91
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=67.65 E-value=53 Score=27.38 Aligned_cols=39 Identities=8% Similarity=0.315 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE 261 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE 261 (338)
.+..|+.++..+.+.|..-..++..+++++....-.++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~ 63 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777778888888777777777766664444333
No 92
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=65.74 E-value=41 Score=30.32 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccc
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRM 278 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRM 278 (338)
+-+|.|-|.-.....++++....=...+..--+.+.-...+|+.|.|+.+-|+-|.|-
T Consensus 99 qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~~~~ 156 (201)
T 3u0c_A 99 NTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSRE 156 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccHH
Confidence 4444444444444444454444444445555566667788999999999999999874
No 93
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=65.17 E-value=1.1e+02 Score=30.53 Aligned_cols=109 Identities=11% Similarity=-0.020 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHH--HHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVN--LEKKVK 296 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~ee--LeEkie 296 (338)
+|+..|...|..+...-+.|+....++.+...+....-..++..- .+..+.-......+.+.++..+.+. ++.-+.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~--~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTY--NPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776666666666666666666666666555555543 3455666666666666665333222 445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILIRL 329 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr~ 329 (338)
..+..|..|+...+....++.++...+.++...
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777666666776666666666544
No 94
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=64.92 E-value=21 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+++++++.++..++.|+.+-.+|-.+++..|.+|+.=+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999899999998887643
No 95
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.72 E-value=18 Score=25.70 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEK-------AIILVPALKIARYLV 324 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQk-------eyLEKqLeelQ~~Lr 324 (338)
.++..|+.++.+++.+-++|+|+- .||++.+.++..+|.
T Consensus 3 nlvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888887763 567777777766553
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.06 E-value=32 Score=42.27 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
.+-+++++++++.++.+.+...++++.|+.+++..+..|..+-+.+
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555566666666666666666554443
No 97
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.81 E-value=62 Score=26.49 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHH 254 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~ 254 (338)
.+.|+...++.++-++..+..|+..++..+..
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 98
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.22 E-value=84 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIIL----VPALKIARYLVILI 327 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLE----KqLeelQ~~LrElL 327 (338)
.....+.++|..|||.+..++ =.|+.+|..+..-+
T Consensus 118 ~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666655 44556665555433
No 99
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=61.07 E-value=38 Score=31.02 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 214 DTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHH 254 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ 254 (338)
.+.+++++..+.+.+.++..++.++....++....+++..+
T Consensus 62 ~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 102 (369)
T 4dk0_A 62 EIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQR 102 (369)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788777777777777776666655555554444443
No 100
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.02 E-value=69 Score=32.31 Aligned_cols=34 Identities=3% Similarity=0.072 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
+.++.+.|..+.+.|++++.+++++|.+++..+.
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444445555555556666666666766666554
No 101
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.79 E-value=72 Score=26.53 Aligned_cols=43 Identities=5% Similarity=-0.073 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
..-.++-+.++..+..++..-|.....|++.+..++..+++-|
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666777777777777777776666655443
No 102
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=60.35 E-value=75 Score=29.41 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy14557 244 QVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARY- 322 (338)
Q Consensus 244 QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~- 322 (338)
+...++..++++.-....|...++... +.++. + .+++++....+..++..+++++..|+.++.+++..
T Consensus 61 ~~~~~~~~~~k~~~~~~~L~~~~~~~~-----~~~~~--~----~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~ 129 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVVGLATVPSS-----KPFTG--S----LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFG 129 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCS-----SCCCS--C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcccccccc-----cCCcc--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445566666777777777776643321 11221 1 56677778888888888888888888888888877
Q ss_pred --HHHHH
Q psy14557 323 --LVILI 327 (338)
Q Consensus 323 --LrElL 327 (338)
+.++.
T Consensus 130 ~~l~~L~ 136 (357)
T 3rrk_A 130 KAAEKLA 136 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 66553
No 103
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.92 E-value=76 Score=30.30 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
-.++++.+|.+|++|+.+.+.++.+++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777777666654
No 104
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.83 E-value=58 Score=26.79 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHH 254 (338)
Q Consensus 224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~ 254 (338)
+.|+..+++.++-++..+..|+..++..++.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 105
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.44 E-value=40 Score=23.81 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
.++.+|+.+.+.++.+...|+.+...|+..-
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3566777777777777777776666665443
No 106
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=59.36 E-value=71 Score=25.98 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
|=.|..+++.||....+....+++.++..+....++.
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556777777777777777777777766666665
No 107
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=59.07 E-value=3.6 Score=33.02 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=27.8
Q ss_pred hcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557 29 CEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 29 ~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~ 59 (338)
-.|.-+||.||+|.+-.+|.||-..++.|++
T Consensus 48 ~eL~leDlKEL~i~s~~~r~~lk~~In~Lr~ 78 (85)
T 1uqv_A 48 PELCLQDCQDLCDGDLNKAIKFKILINKMRD 78 (85)
T ss_dssp HHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999999974
No 108
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=59.03 E-value=49 Score=33.41 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
-.++|.++.+.+.++|+.|+++...+++++.+..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999887654
No 109
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.01 E-value=56 Score=32.32 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+.+++..++..+...+.+...|+..++.++.+|+++
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444444446666666666666555544
No 110
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=58.47 E-value=98 Score=27.34 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhh-----------cccccccCc
Q psy14557 216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESV-----------GRMFIKTPH 284 (338)
Q Consensus 216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSV-----------GRMFVltdK 284 (338)
+.+.+-+.|.++..++++..++...+-..-.....+++.-.-+.+. ..+..++|+-= =..|-...-
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieA---F~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~ 87 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEA---FNETIKIFEEQGQTQEKSSKEYLERFRREGN 87 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSSSTTGGGSSSSSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHhhcC
Confidence 4567788888888888877777666544433333333332222222 22223344332 223444555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+.-+..|.+..+.+..+++.|...+..|++.++......++
T Consensus 88 ~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~re 128 (170)
T 3l4q_C 88 EKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNRE 128 (170)
T ss_dssp SSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54555666777777777777777777777777655555443
No 111
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=58.24 E-value=17 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
+.+.=.++|+.+...++++|..|++.-..|.+-+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3445556677777777777777776666665433
No 112
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=58.22 E-value=36 Score=30.84 Aligned_cols=41 Identities=5% Similarity=0.114 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHT 255 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~a 255 (338)
+.+++++..+.+++.++..++.++.....+....+++..+.
T Consensus 62 ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 62 IDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888877777777776666665555554443
No 113
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.41 E-value=1e+02 Score=26.87 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=46.8
Q ss_pred HHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q psy14557 257 LTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCA 334 (338)
Q Consensus 257 LTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a 334 (338)
-+..||+.|. +..|.-.-+|.. +-......++.+...|+++..--+..++.+|.+|.++-....+|-
T Consensus 83 ~ie~ElEeLT--asLFeEAN~MVa---------~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 83 KLNKEVEDLT--ASLFDEANNMVA---------DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777773 677777666643 235556677778888888888888888888888888776666554
No 114
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.11 E-value=1.4e+02 Score=30.49 Aligned_cols=89 Identities=7% Similarity=0.089 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
.+++.+.+|.+.+.+.++.-+.+.+-...+..-+|.-+....+.+ .+| .++.++|+.++..+
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dnd------n~~------------~e~S~eLe~ri~yI 123 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLD------ENY------------GHVSTELRRRIVTL 123 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH------HHH------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccch------hHH------------HHHHHHHHHHHHHH
Confidence 455556666666666655555544444444444433333333222 233 35566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+++|..--.+..-|+..++++..+|+.
T Consensus 124 K~kVd~qi~~IrvLq~~l~~q~skIQR 150 (491)
T 1m1j_A 124 KQRVATQVNRIKALQNSIQEQVVEMKR 150 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655445555555555555554443
No 115
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.03 E-value=20 Score=27.36 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
=|...+.+|+.++..++.....|...-..|..++..++.++.+
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777777777777654
No 116
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.79 E-value=41 Score=26.35 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
+.+.+||.++.++++.+..++.|++....++..+.--.+++
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999998888887776655543
No 117
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=55.43 E-value=41 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQL 257 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeL 257 (338)
++.||+.++........+..+++..++.++.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666664
No 118
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=55.23 E-value=18 Score=29.53 Aligned_cols=38 Identities=5% Similarity=0.118 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
...+...++.++..|+.+++.|.+.+...+.+|+.+..
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777788888888888888888888888887653
No 119
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=55.11 E-value=63 Score=24.33 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAI 311 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkey 311 (338)
...+++++..+..+-..|...-..
T Consensus 80 ~~~i~~~l~~l~~rw~~L~~~~~~ 103 (118)
T 3uul_A 80 EFEIQEQMTLLNARWEALRVESME 103 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666665555555444333
No 120
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.93 E-value=86 Score=25.59 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLee 318 (338)
.++.++.+|.....+|.+-.++
T Consensus 87 dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666555543
No 121
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=53.48 E-value=77 Score=24.63 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
...++++...|.+++.-|+.++.+++..|
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788888888888888888887765
No 122
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.21 E-value=45 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
.....+|+.+++.++.+...|..+...|+.++..+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555555554443
No 123
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=52.47 E-value=1.1e+02 Score=29.87 Aligned_cols=35 Identities=11% Similarity=-0.035 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+..+.+.|..+.+.+++++.+++++|.+++..+.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444555555555666666677777777766554
No 124
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=52.34 E-value=27 Score=27.29 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
++++++++.++..++.|+.+-.+|-.+++..|.+|+.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKq 39 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQ 39 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777776666666666666654
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.16 E-value=9.8 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVEN 247 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~Qiqq 247 (338)
+.|++...+|+.|+..++++++....++.+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678888888888888888888877776543
No 126
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.33 E-value=17 Score=28.60 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+++|..+.+.+..++.++..-+.+++.++.+++++|+.
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888889999999999999999999999988875
No 127
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.63 E-value=41 Score=27.46 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=29.1
Q ss_pred CCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 266 QPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 266 PeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyL 312 (338)
|.+|+|+. |...|-....+..++.++.+..+++.|..+...|
T Consensus 53 ~~~TKVlH-----~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 53 QSRTKVLH-----MSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp TTTEEEEE-----ESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccCeeee-----ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677765 6777777777777777777777777776554443
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.11 E-value=34 Score=26.56 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+..-++.|+.|+++....+..+.+++.+|-+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666566666655555543
No 129
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.71 E-value=64 Score=24.87 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
++=+.+|+.++.-.+.-|..|......-++++..++++|+.+....
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777777777777777777666544
No 130
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=47.43 E-value=55 Score=30.13 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=38.2
Q ss_pred ceeeccCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 208 ISTEVSDTVVTCGDKAF----AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 208 ~s~~~~~~~deELqKaf----~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
+|+.|...+|+.+++-+ .++..++..++++|+...++..+....+..+...+.|+-
T Consensus 153 LSL~f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 153 ITLAFRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788776653 467777777777777777777777777666666666553
No 131
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.14 E-value=1.1e+02 Score=24.35 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies 297 (338)
+++++.+..+...=..+-++|..+..+...+..++...+.-...|..- ....|+- .+.+.-+.-.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e--E~~~w~e-------------yn~~~~ql~e 71 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE--EAQYQRE-------------YSEFKRQQLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH--HHHHHHH-------------HHHHHHHHHH
Confidence 578888888888888888889998888888888888888777766653 3455554 4556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+..+..+++.|-.|-+.++..+++
T Consensus 72 ~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 72 LDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 778888888888888888877654
No 132
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=46.81 E-value=2e+02 Score=27.73 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHH---H
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKK---V 295 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEk---i 295 (338)
++...+.++..+-.+++++.+.+.+++++++...-.=..+..-|+.| ++-+|--|= +..+|...+... .
T Consensus 7 ~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL------~eq~g~~~~--ds~~v~~~mq~~Le~E 78 (302)
T 3ibp_A 7 SLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQL------SEQCGEEFT--SSQDVTEYLQQLLERE 78 (302)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCCCS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH------HHHhCCcCC--CHHHHHHHHHHHHHHH
Confidence 44555566666666777777777778877777665555555555544 344555543 454554444222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLee 318 (338)
..++.....+..+++.|+++++.
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ier 101 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIER 101 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555544
No 133
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.21 E-value=76 Score=23.13 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
-+...+|+.+++.++.+-..|..+...|+.++..+..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555555555555555544444433
No 134
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.05 E-value=41 Score=32.93 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 302 IKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+.|..+.+.+++++.+++++|.+++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444555556666666666665554
No 135
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=45.73 E-value=37 Score=26.97 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENF 248 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~Qiqql 248 (338)
+|.+.|-|+.+.+...++..+++||...
T Consensus 42 rKlLaeAQqmL~DSk~KIe~lRmqI~k~ 69 (81)
T 1urf_A 42 RKLLLTAQQMLQDSKTKIDIIRMQLRRA 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999654
No 136
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=45.52 E-value=2.2e+02 Score=27.56 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=33.5
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 281 KTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 281 ltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
....+.-+..+.+..+.+..+++.+...++.|+..++......++
T Consensus 193 ~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (373)
T 3hhm_B 193 REGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYRE 237 (373)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555677888888888999998888888888888765555443
No 137
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=45.49 E-value=93 Score=23.26 Aligned_cols=39 Identities=8% Similarity=0.126 Sum_probs=18.8
Q ss_pred hhhcccccccC--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 273 ESVGRMFIKTP--HPEVVVNLEKKVKSYEEKIKDIESEKAI 311 (338)
Q Consensus 273 KSVGRMFVltd--KdeI~eeLeEkieslEerIK~LEKQkey 311 (338)
...|+.||... -++-...+++++..+..+-..|...-..
T Consensus 63 ~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~ 103 (119)
T 3uun_A 63 LQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASME 103 (119)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555432 2333445555555555555555444333
No 138
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=45.27 E-value=20 Score=27.93 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=39.6
Q ss_pred hhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhh
Q psy14557 10 KKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57 (338)
Q Consensus 10 L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L 57 (338)
-+.|+..|..|-.+. +.+.+|..+-|++|||+ ..+--||+..+...
T Consensus 19 c~rYA~~F~~~ri~e-~mL~Dl~~~~Lr~LGi~-eGDIIrVmk~l~~k 64 (72)
T 3idw_A 19 CQRYTINFDREQLTE-DMMPDINNSMLRTLGLR-EGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHHHHHHTTCCG-GGGGGCCHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCH-HHHhhCCHHHHHHcCCc-hhhHHHHHHHHHHH
Confidence 367999999988765 78889999999999998 79999999888763
No 139
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=45.02 E-value=68 Score=25.33 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
++.++.+...++.+|..|.++..-++..+..++..|..+..
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 140
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=44.56 E-value=4.9 Score=26.57 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHhhhhh
Q psy14557 43 NPEHRAKILAAVQVMHE 59 (338)
Q Consensus 43 dp~hR~rlL~Av~~L~~ 59 (338)
||++|.|||+|++.|-+
T Consensus 1 D~~~q~rLl~aak~vae 17 (31)
T 1u6h_B 1 DLENSRKLLSAAKILAD 17 (31)
T ss_dssp ----CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 68999999999888754
No 141
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.41 E-value=1.4e+02 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+..+.+.+..++..|.++...|++++.+++.++.
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555554
No 142
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.98 E-value=83 Score=25.97 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKH 253 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR 253 (338)
..+++.+.+.+.++.+++++++.+..+++.+++++-
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888888887643
No 143
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.46 E-value=69 Score=32.35 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
++|.++.+.+.++|+.|+.+...++.++.+..
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788889999999999999988887654
No 144
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=42.06 E-value=42 Score=31.77 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=37.0
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 278 MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 278 MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
.|....-+.-+..|.+..+.+..++.+|-..+..++..|.-....+.++
T Consensus 82 ~~~~~~~~~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~i 130 (302)
T 2y3a_B 82 RFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREI 130 (302)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhH
Confidence 4666666788888899999999999999888888888888777777766
No 145
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.95 E-value=1.3e+02 Score=23.78 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 223 AFAELQIKMMDTKQKLKIQDIQVENFKK 250 (338)
Q Consensus 223 af~ELQ~KlieTQQQLq~V~~QiqqlEr 250 (338)
.|.+|..|++++-..+..+...+..++.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKe 34 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666665555554444
No 146
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=41.87 E-value=58 Score=27.01 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+.+++.+-|.++.+.++.+|+.|+..++.|+..+...++.+.
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888888888887777666554
No 147
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=41.05 E-value=2e+02 Score=28.92 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCCCchhhhhhcccccccCchHHHHHH----HHH
Q psy14557 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQL---TLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNL----EKK 294 (338)
Q Consensus 222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeL---TlkELekLPeDTkVYKSVGRMFVltdKdeI~eeL----eEk 294 (338)
..+.+|-.+...++.++..+++++..+.+++..... ...+.+.+|++... +-+...-..+-.++| .++
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~ 111 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKE-----AYENGTLKGEQVEQLCVLQLKQ 111 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc-----cccccccchhhHHHhhHHHHHH
Confidence 344555555555666666655555555555543322 12334445544220 001001011223455 556
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 -VKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 295 -ieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
.+.+.++|+.|+++...++.++.+.-
T Consensus 112 ~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 112 LSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887654
No 148
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.71 E-value=85 Score=22.11 Aligned_cols=45 Identities=18% Similarity=-0.012 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
.-+..++...+.++.++..+....+.+...+.++.+.|..+...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555444444333
No 149
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.54 E-value=80 Score=25.06 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+..|+.....+-.+++.|++.+..+...++.++.+.+.
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~ 50 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAER 50 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777777777777666666554
No 150
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=40.33 E-value=55 Score=31.27 Aligned_cols=45 Identities=4% Similarity=-0.030 Sum_probs=35.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIE-------------SEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LE-------------KQkeyLEKqLeelQ~~LrEl 326 (338)
-+-++.+++|+++++.++.++.+++ +|.+-++++++..++.|.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 243 INFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999984 45566777777777777765
No 151
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.20 E-value=60 Score=25.24 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+|..|+..--+=+..+..+...+...++.|+.+-..+...|++
T Consensus 42 sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 42 PKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444444444444444444444444444444
No 152
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.05 E-value=1.9e+02 Score=25.19 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHH 254 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~ 254 (338)
.|...+..+++++......+.+++....+
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~ 45 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKED 45 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777776666666666654443
No 153
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.02 E-value=63 Score=24.82 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=21.3
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 278 MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 278 MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
.=|+..--+++..|.++...+..++..|.++.+.|.++++
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555555555555555555555543
No 154
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.84 E-value=76 Score=23.13 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
++.+..++.+++.|+.....|..++..++.++..+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888888888877776654
No 155
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.47 E-value=79 Score=22.73 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
++.+..++.+++.|+..-..|..++..++.++..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888877654
No 156
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.40 E-value=1.7e+02 Score=24.65 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
-+++|+.+++++..++.......+.|.+..+.+...|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 3556666666666665555555555555555444433
No 157
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.40 E-value=77 Score=23.23 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
...++.+++.|+..-..|+.+++.++.++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 158
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.12 E-value=88 Score=22.92 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
-.-..+|+.+.+.++.+...|+.+...|+..+..+-.-|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34466778888888888888888888887777666554443
No 159
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.98 E-value=21 Score=27.17 Aligned_cols=62 Identities=5% Similarity=0.083 Sum_probs=38.0
Q ss_pred HHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 256 QLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 256 eLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.-...+|..+-|..+ + + +.+|.+|+..--+=++.+..++..|+.+.+.|.++...++.+|..
T Consensus 18 n~~f~~Lr~lvP~~~---~-~----k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 18 KDSFHSLRDSVPSLQ---G-E----KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHTTSGGGT---T-S----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCC---C-C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777643322 1 2 347777777766666666666666666666666666666666543
No 160
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=38.71 E-value=79 Score=25.18 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeel 319 (338)
++++.-..+|+.|+++.+.+.+.++++
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444443
No 161
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.17 E-value=1.3e+02 Score=27.35 Aligned_cols=85 Identities=6% Similarity=-0.024 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDI 305 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~L 305 (338)
+++.++...+.++....+++.+.+.++..++...+-+..|-..- ++ ++.+ .++.+.....++.+++.+
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~---------~~--s~~~-~~~a~~~~~~a~a~~~~~ 134 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQK---------AT--SLDT-LNTAKATLNNAKAEMDVV 134 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSS---------CS--CGGG-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------Cc--CHHH-HHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777666666665555555554442111 01 1111 233344444555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14557 306 ESEKAIILVPALKIARY 322 (338)
Q Consensus 306 EKQkeyLEKqLeelQ~~ 322 (338)
+.+.+.++.+++.++..
T Consensus 135 ~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 135 QENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444443
No 162
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.12 E-value=67 Score=30.83 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
|+..+...+.+|..|+.+.+.++.++.+++.+|.++..
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666666667766666665553
No 163
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=37.50 E-value=3.7e+02 Score=27.86 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=38.6
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 213 SDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 213 ~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
|...-.++.+.+.+|...++++.+.++.+.+..+..--..+.......++..+
T Consensus 10 ~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~~~~~~~~~~~~~ 62 (585)
T 1y1u_A 10 MSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQL 62 (585)
T ss_dssp -CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHhhh
Confidence 44566789999999999999999999998888887666655555433344433
No 164
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.38 E-value=1.1e+02 Score=30.39 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
++|.++.+.+.++|+.|+++...++.++.+..-
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999999999999999988876543
No 165
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.28 E-value=1.4e+02 Score=23.04 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTL 259 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTl 259 (338)
++|+.++.+--.++..-...++..+.+++.++.+++..+--+
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655555555566666667777777777666554433
No 166
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=37.08 E-value=1.5e+02 Score=27.93 Aligned_cols=73 Identities=7% Similarity=0.040 Sum_probs=41.4
Q ss_pred HHHHhccCCCchhhhh--hccccccc--CchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 259 LTEIKRLQPTTNTYES--VGRMFIKT--PHPEVVVNLEKKVKSYEEK----IKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 259 lkELekLPeDTkVYKS--VGRMFVlt--dKdeI~eeLeEkieslEer----IK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
-+|++++..+++-=+. .|+..-++ .+....+++..|++.++.+ +...++++..|+..--+...+|+++|...
T Consensus 146 ~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~ 225 (279)
T 3qwe_A 146 SEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQG 225 (279)
T ss_dssp HHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4577776443321111 24433222 2444555666666666554 55677888888888888899999998755
Q ss_pred C
Q psy14557 331 T 331 (338)
Q Consensus 331 ~ 331 (338)
|
T Consensus 226 D 226 (279)
T 3qwe_A 226 D 226 (279)
T ss_dssp H
T ss_pred H
Confidence 4
No 167
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=37.03 E-value=1.3e+02 Score=22.57 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 253 HHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 253 R~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
+.+-..+..+-.-.++.++= |+=|+..--+++..|.++...++.++..|..+...|+.++..++
T Consensus 18 n~~f~~Lr~lvP~~~~~k~s----K~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 18 KDSFHSLRDSVPSLQGEKAS----RAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHTTSGGGTTSCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444332234432 33466666788999999999999999999999999998887543
No 168
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.56 E-value=1.1e+02 Score=21.82 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
|.+++..++.+--.|++.++.|+|-+.++.++|..+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888887776543
No 169
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=36.17 E-value=55 Score=27.23 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
.+++.++.+|++++|+..+|.+-+.+.-.++|+++-+.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999988643
No 170
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.09 E-value=1.8e+02 Score=23.80 Aligned_cols=38 Identities=26% Similarity=0.255 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
+|+.++..+..++...+.+...|...-++++.++.++-
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444555444443
No 171
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.91 E-value=75 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
+.|+++++.+-.+...|+.+-.+|++-+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4455555555555555555555554443
No 172
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.54 E-value=51 Score=27.40 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=30.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+.+++.+-|+++.+.++.+|+.|++..+.|+..+...++.++.
T Consensus 92 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 92 TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777888888999999999998888888888777665443
No 173
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=35.23 E-value=24 Score=29.02 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=39.3
Q ss_pred hhhHhhhhhcCcccHHHhhcCCcccccc-cCCCChHHHHHHHHHHhhhh
Q psy14557 11 KEHMSVFVLNGYEDLESFCEIKEEDLNY-LKILNPEHRAKILAAVQVMH 58 (338)
Q Consensus 11 ~ey~s~~l~NGyddLe~~~~i~e~dL~e-lgI~dp~hR~rlL~Av~~L~ 58 (338)
......|..+||.+++.+......+|-+ -||. +..-.||+.|++.+-
T Consensus 35 ~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIs-e~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 35 ANDVKKLEEAGFHTVEAVAYAPKKELINIKGIS-EAKADKILAEAAKLV 82 (114)
T ss_dssp HHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCS-TTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCC-HHHHHHHHHHHHHHc
Confidence 4778999999999999999999999987 4665 566778999888764
No 174
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.06 E-value=1.1e+02 Score=23.47 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=37.5
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
.++-.|+..-.+=+..+..+...+....+.|.++.+.+...|..
T Consensus 36 ~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 36 HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48889999999889999999999999888888888888877753
No 175
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=35.01 E-value=92 Score=25.85 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=46.8
Q ss_pred ccccccCCCceeeccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 199 SLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 199 ~~~~~~~~~~s~~~~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
..+=+.|.++.+.. .+..|..-+..++..+..++..+..++..+...+...+-.+.++...
T Consensus 81 ~V~v~lG~g~~vE~------~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 81 NAIVSVGSGYAVER------SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EEEEEEETTEEEEE------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred EEEEEeCCCeEEEe------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777766 56777778888888888888888888888888888888888887654
No 176
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=34.87 E-value=3.6e+02 Score=27.26 Aligned_cols=106 Identities=7% Similarity=-0.006 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH---
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV--- 295 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki--- 295 (338)
+|+..|...|..+...-+.|+....|+.+...+....-..++..-. +..+.-... ...+++.+..|.+.+.-..
T Consensus 81 glad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~--~~q~~~~~n-~~~~~~s~~mle~~~~~~~~~~ 157 (461)
T 3ghg_B 81 QLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQ--KRQKQVKDN-ENVVNEYSSELEKHQLYIDETV 157 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--HHHHHHHHH-HHTTSCHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccCCCCcc-hhHHHHHHHHHHHHHHHHHhhh
Confidence 5555555555554444444444444444444444444444433321 223444444 4445555554444333322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 -KSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 296 -eslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
-..+..|..|....+.+..++++++..+..+.
T Consensus 158 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 158 NSNIPTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 24566777777777777777777777666543
No 177
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.48 E-value=68 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
+..++.++..|+.+...|..++..++.++
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 178
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=34.45 E-value=2.1e+02 Score=24.26 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY 298 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl 298 (338)
++.|+.-|-+.....+..+-..-.-.+..++.+++.+....++-. .-|.-|.|-++. ++...+.+
T Consensus 28 eaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeead------rKyeE~~RKl~~---------~E~dLera 92 (147)
T 2b9c_A 28 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD------RKYEEVARKLVI---------IESDLERA 92 (147)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHH---------HHHHHHHH
Confidence 344444454444444555555556678888888888888887654 457777774332 23333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+++....+.+..-|+..+..+-.+|+.
T Consensus 93 eeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 93 EERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444443
No 179
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=34.30 E-value=66 Score=24.84 Aligned_cols=38 Identities=3% Similarity=-0.084 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+-+-.+.+.+..|++++++|++++++....-++.++.+
T Consensus 6 ~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~kn 43 (79)
T 4abm_A 6 EAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKN 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34456677777788888888888877666666655433
No 180
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.28 E-value=50 Score=23.97 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
+-+.+.+|+.+++.++.+...|..+...|+.++..+...
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888888888888888888877665443
No 181
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.26 E-value=68 Score=20.89 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAI 311 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkey 311 (338)
|+++-..++.++..|+|+.+.
T Consensus 6 lekkcaalesklqalekklea 26 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 182
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.24 E-value=1.2e+02 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+++.-....|.+|..|-|-...|..++.-+|.+|+++..-|
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 46677788899999999999999999999999998877543
No 183
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.26 E-value=1.1e+02 Score=20.96 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIIL 313 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLE 313 (338)
+.|+++++.+-.+...|+.+-.+|.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444444444444443
No 184
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.14 E-value=92 Score=23.41 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 252 KHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 252 lR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
+|.+-++++|+..+= ..|.. |.. .+.+++..-|+++.+.++.+|..|+..+..|+..+.
T Consensus 12 lr~lGfsL~eIk~~l---~~~~~-~~~---~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 12 ARQLGFSLESIRELL---SIRID-PEH---HTCQESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHTTCCHHHHHHHH---HHHHC-GGG---CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHH---HHHhC-CCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666651 11211 110 134567777788888888888877777777766554
No 185
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=33.02 E-value=1.2e+02 Score=26.64 Aligned_cols=24 Identities=0% Similarity=-0.051 Sum_probs=13.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKL 238 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQL 238 (338)
+.+++++..+.+.+.++..++.++
T Consensus 53 ld~~~~~~~l~~a~a~l~~a~a~l 76 (277)
T 2f1m_A 53 IDPATYQATYDSAKGDLAKAQAAA 76 (277)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHH
Confidence 345677666666666544444333
No 186
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=32.68 E-value=53 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
.-+.+...+++++.+||.+..+||.++.
T Consensus 42 sce~KLa~ln~KL~~LEr~L~iLEAkls 69 (75)
T 3p8c_E 42 SCRSRLATLNEKLTALERRIEYIEARVT 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777777777776653
No 187
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=32.65 E-value=1.1e+02 Score=21.46 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+..+..+-..||++...|++++..+++.|+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456677778888888888888888877653
No 188
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.64 E-value=81 Score=24.05 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
...+.+++.+.+..=+++|..|+.....-+..+.+++.+|.+
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666555545555555444443
No 189
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.63 E-value=39 Score=29.10 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=9.7
Q ss_pred CcHHHHHHHHHHHH
Q psy14557 216 VVTCGDKAFAELQI 229 (338)
Q Consensus 216 ~deELqKaf~ELQ~ 229 (338)
.+++|-|++++||.
T Consensus 23 ~~~elik~L~~le~ 36 (152)
T 4fla_A 23 LTEELIKALQDLEN 36 (152)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhc
Confidence 34577777777766
No 190
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.23 E-value=1.4e+02 Score=23.63 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccc
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRM 278 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRM 278 (338)
+.--.+++.++..+.+.-..+..++++++.++.... .-|..+|+. +.+++|.+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr---~ll~~~p~~--~~~~~~~~ 87 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR---NLFKQLPEP--LLASSGHC 87 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCcHH--HhccccCC
No 191
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.16 E-value=1.5e+02 Score=23.96 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 284 HPEVVVNLEKKVKSYEEKIKDIESEKA 310 (338)
Q Consensus 284 KdeI~eeLeEkieslEerIK~LEKQke 310 (338)
++.+..+|+++++.++.+|..||.-..
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655433
No 192
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=32.12 E-value=46 Score=25.86 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqLe 317 (338)
-++|...+++++.+||.+..+||.++.
T Consensus 43 ce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 43 TRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666654
No 193
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.79 E-value=1e+02 Score=21.76 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
+.+..+++..+.+|..|+++.+-|++..
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556778888888888888888887654
No 194
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=31.54 E-value=96 Score=29.87 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=11.4
Q ss_pred CCCcHHHHHHHHHHHH
Q psy14557 214 DTVVTCGDKAFAELQI 229 (338)
Q Consensus 214 ~~~deELqKaf~ELQ~ 229 (338)
.+.||.+|+.|++++.
T Consensus 235 ~~~d~~~~~~~~~i~~ 250 (365)
T 3fse_A 235 KESDVEAKALFQEMIT 250 (365)
T ss_dssp HCCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3567777777777776
No 195
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.52 E-value=1.4e+02 Score=23.66 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
..+|+.-.++.+.|++.++.....|+++-
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666667777766666666653
No 196
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=30.22 E-value=3.7e+02 Score=25.64 Aligned_cols=86 Identities=3% Similarity=0.015 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies 297 (338)
.-||..|..++.++.++++.+..-...+..+++.+...+.+.. + ... ||. .. .-..+.++...+..
T Consensus 305 ~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~-----~-~~~----~~~---~~-~~~~~~e~~~~~~~ 370 (406)
T 4dyl_A 305 ESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTH-----P-RER----VQL---LG-KRQVLQEALQGLQV 370 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-----T-TCG----GGG---HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----c-chH----HHH---Hh-HHhhHHHHHHHHHH
Confidence 3688888888888888888888877777888877777754421 1 111 222 22 22233444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPAL 317 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLe 317 (338)
+.-.-.+|++|++-|+..+.
T Consensus 371 ~~~~~~~~~~q~~~~~~~~~ 390 (406)
T 4dyl_A 371 ALCSQAKLQAQQELLQTKLE 390 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 197
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.17 E-value=1.5e+02 Score=23.20 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 245 VENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILV 314 (338)
Q Consensus 245 iqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEK 314 (338)
+.+...++.-...|..||..= + +..++++++|+.+...++..|..|+.+.+-|++
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G-----------~----~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKG-----------H----QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHhh-----------h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566666642 1 133556666666666666666666666555543
No 198
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.95 E-value=1.7e+02 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEK 309 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQk 309 (338)
+.|..+++.++.+|..|+.+.
T Consensus 25 e~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554443
No 199
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=29.90 E-value=48 Score=25.02 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+......|+.+.+.|++++++++..+..+
T Consensus 37 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L 65 (99)
T 1q08_A 37 CQESKGIVQERLQEVEARIAELQSMQRSL 65 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666555555544433
No 200
>4doh_A Interleukin-20; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Probab=29.80 E-value=49 Score=28.42 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=46.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCchhhhhhccc
Q psy14557 213 SDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQV--ENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRM 278 (338)
Q Consensus 213 ~~~~deELqKaf~ELQ~KlieTQQQLq~V~~Qi--qqlErelR~aeLTlkELekLPeDTkVYKSVGRM 278 (338)
....+|..+..+.-|...+..+++.|+....+. .--+...+....-.+...+|++...+||++|.+
T Consensus 75 ~~~~~~~~~~~vsslan~f~~L~~~L~~C~~~~~C~~~~~~~~~~~~ik~~f~kL~~~~g~~KAiGEL 142 (153)
T 4doh_A 75 YQTPDHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVKALGEL 142 (153)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred cccCcchhhhhHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence 444688999999999999999999999876432 112222333444456666787678999999986
No 201
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=29.67 E-value=1.7e+02 Score=21.62 Aligned_cols=90 Identities=7% Similarity=0.021 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHH
Q psy14557 215 TVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKK 294 (338)
Q Consensus 215 ~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEk 294 (338)
+.|++|+.+-.++.....++++.+..+..++..+. ..|++-+.- .-....+++...
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~--------------------~~W~G~a~~----aF~~~~~~~~~~ 63 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVID--------------------ENWDGSTFD----SFEAQFNELSPK 63 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHBCSSTTH----HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------cccCcHHHH----HHHHHHHHHHHH
Confidence 46677777777766655555555544444433332 245444431 223456677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
...+..-+..+.......-..++++..++...++
T Consensus 64 ~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A~~~~ 97 (98)
T 3gwk_C 64 ITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888888888888888887766554
No 202
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=29.59 E-value=4.6e+02 Score=26.55 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS 297 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies 297 (338)
..+++-+++|...+.++.+.=+.+..-+..++...+..+.+...-+.+ ++-|+..=.--.+--++.+.......+..
T Consensus 91 ~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~---~~~s~~mle~~~~~~~~~~~~~~~~~i~~ 167 (461)
T 3ghg_B 91 RPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENV---VNEYSSELEKHQLYIDETVNSNIPTNLRV 167 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHHHHTHHHHHHHTHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhH---HHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 367777777777777776666665555566655555555555443322 22232211111111234455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARY 322 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~ 322 (338)
+..-+..+.++.+.|+..+..+++.
T Consensus 168 l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 168 LRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6666666666666666666655543
No 203
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.48 E-value=1.2e+02 Score=20.11 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
.|+++...+..-+.+|+++..+|+.+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555443
No 204
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.20 E-value=39 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAII 312 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyL 312 (338)
.|+.+++.+++++..|+++...+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 205
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=29.01 E-value=2e+02 Score=23.73 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557 231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR 264 (338)
Q Consensus 231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELek 264 (338)
+..+|..+..+......+..-+|..+..-..|+.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3345555555555556666666666666555554
No 206
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.75 E-value=2.2e+02 Score=22.70 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKN 251 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlEre 251 (338)
.||.|+.++++.+.....+++.+++.
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km 44 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKM 44 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655555554443
No 207
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.58 E-value=1.1e+02 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 293 KKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 293 EkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+++..++.+++.|-.++..|+.+...+++
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35677888888888888888777665554
No 208
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.55 E-value=3.2e+02 Score=24.41 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 302 IKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 302 IK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+..|++....|.+....++..|+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 209
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.51 E-value=2.4e+02 Score=22.93 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEI 262 (338)
Q Consensus 232 ieTQQQLq~V~~QiqqlErelR~aeLTlkEL 262 (338)
.+++.+++.+..+++.++....-.+-++.|+
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344555555555555544444444444443
No 210
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=28.32 E-value=2.1e+02 Score=22.23 Aligned_cols=32 Identities=9% Similarity=-0.076 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENF 248 (338)
Q Consensus 217 deELqKaf~ELQ~KlieTQQQLq~V~~Qiqql 248 (338)
|.|++.-|.+|...=...+.-+..++.+++..
T Consensus 17 P~El~r~~~~irelD~~~~~~~~~i~~~~~~~ 48 (104)
T 4afl_A 17 PFELQRNFQLMRDLDQRTEDLKAEIDKLATEY 48 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55888888887775444444444444444433
No 211
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=28.31 E-value=53 Score=24.51 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=33.0
Q ss_pred hHhhhhhcCcccHHHhhcCCcccccc-cCCCChHHHHHHHHHHhh
Q psy14557 13 HMSVFVLNGYEDLESFCEIKEEDLNY-LKILNPEHRAKILAAVQV 56 (338)
Q Consensus 13 y~s~~l~NGyddLe~~~~i~e~dL~e-lgI~dp~hR~rlL~Av~~ 56 (338)
-...|..+||.++|++....-.+|.+ .||. .+.=.+|..+++.
T Consensus 19 ~~~kL~e~Gi~TvedlA~~~~~eL~~i~gis-e~kA~~ii~aAr~ 62 (70)
T 1wcn_A 19 LAFKLAARGVCTLEDLAEQGIDDLADIEGLT-DEKAGALIMAARN 62 (70)
T ss_dssp HHHHHHTTTCCSHHHHHTSCHHHHHTSSSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHcCCHHHHHHccCCC-HHHHHHHHHHHHH
Confidence 45788999999999999999999987 4554 4555566666664
No 212
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.29 E-value=2.1e+02 Score=22.18 Aligned_cols=31 Identities=0% Similarity=0.123 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 233 DTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 233 eTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
++++|+..+......+..++..++.+...+.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk 34 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665553
No 213
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.89 E-value=1.6e+02 Score=21.24 Aligned_cols=38 Identities=5% Similarity=-0.063 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
+++|..++..+..++..|......+.-.++..+++-..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777666655554433
No 214
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.53 E-value=81 Score=21.56 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
++..++.+++.|...+..|+.+...+++-+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456788888888888888877776655533
No 215
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.43 E-value=1e+02 Score=20.79 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALK 318 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLee 318 (338)
+...++.+++.|-..+..|+.+...
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3445566666666666665555443
No 216
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.22 E-value=2.2e+02 Score=22.03 Aligned_cols=47 Identities=2% Similarity=0.061 Sum_probs=43.1
Q ss_pred hhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 274 SVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 274 SVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
-+-|+=|+..--+++..|.++...+...+..|..+...|..++++++
T Consensus 40 K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 40 KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777899999999999999999999999999999999999998875
No 217
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.21 E-value=1.4e+02 Score=20.05 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAI 311 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkey 311 (338)
+.|++|++.+-.++..|+.+..+
T Consensus 3 nQLEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455554444444444444333
No 218
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.95 E-value=3.3e+02 Score=24.01 Aligned_cols=43 Identities=5% Similarity=-0.110 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR---YLVILIRL 329 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~---~LrElLr~ 329 (338)
-.++|..-...++..+..|++++..|++.+..+++ ++++..+.
T Consensus 50 ~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~ 95 (174)
T 2p22_A 50 FHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666777777777777777777776666 55555544
No 219
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.75 E-value=1.1e+02 Score=19.92 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 297 SYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeel 319 (338)
.++.+-..|+.+.+.|+|+++.+
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666655544
No 220
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.71 E-value=78 Score=24.64 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqL 316 (338)
..+-|+++.+.++.+++.|+...+.|+..+
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777766666666665543
No 221
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.56 E-value=1.4e+02 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILV 314 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEK 314 (338)
+.|+..|+..-..++.+|..|+|....|++
T Consensus 23 enivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665555544
No 222
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.53 E-value=1.5e+02 Score=24.16 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN 330 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~ 330 (338)
+|-++.+.++.-+..|+.+-+.-++.+.++|..|-++++.+
T Consensus 22 eL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l 62 (101)
T 1d7m_A 22 QLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNL 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444555555555555555555566666666666665544
No 223
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.52 E-value=2.2e+02 Score=25.58 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
+++.++.+.+.++....+++.+.+.++..++...+-...|
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L 105 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRL 105 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777766666666665555554444
No 224
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.13 E-value=2.2e+02 Score=22.41 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 288 VVNLEKKVKSYEEKIKD-------IESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 288 ~eeLeEkieslEerIK~-------LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
+++|+++...+..+... |..+-+.|......-++.|+.+++.++
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555554444444 333334444444455555666665544
No 225
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=25.78 E-value=34 Score=29.38 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.4
Q ss_pred ccCCCChHHHHHHHHHHhhhhh
Q psy14557 38 YLKILNPEHRAKILAAVQVMHE 59 (338)
Q Consensus 38 elgI~dp~hR~rlL~Av~~L~~ 59 (338)
+-.=.||++|.|||+|+..|-+
T Consensus 94 Ae~~~D~~~q~rLL~AAk~lAd 115 (139)
T 1u89_A 94 AEGESDLENSRKLLSAAKILAD 115 (139)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHH
Confidence 3455899999999999998865
No 226
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.73 E-value=1.4e+02 Score=21.37 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIARYL 323 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~~L 323 (338)
++.+..+...|+.+-+.|.++++++..+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 227
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.65 E-value=50 Score=23.76 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKA 310 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQke 310 (338)
..+++|+.++..++.+...|..+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444444444444433333
No 228
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.61 E-value=2.2e+02 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 291 LEKKVKSYEEKIKDIESEKAIILVPA 316 (338)
Q Consensus 291 LeEkieslEerIK~LEKQkeyLEKqL 316 (338)
|++++..++.++..-..++..++..+
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333333
No 229
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.58 E-value=1.7e+02 Score=28.52 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK 263 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe 263 (338)
++++...+++.+..+++..++.+..|+.+.+..+|+..-+..||.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555566666666666666666666666666666676666666664
No 230
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.21 E-value=1.5e+02 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+.+.+-|+++.+.++.+|+.|++.++.|+..++..+.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999999888888887766544
No 231
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.77 E-value=1.1e+02 Score=29.76 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
-+++|+++.+.++.+|+.++...+.++.++.+.+..-|
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr 48 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRR 48 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655555444433
No 232
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.72 E-value=5.2e+02 Score=25.63 Aligned_cols=29 Identities=10% Similarity=-0.104 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVE 246 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~Qiq 246 (338)
++|++.+.++++...++.+-+..+..-..
T Consensus 70 e~L~~~L~~~s~s~~~~~~y~~~~~~~lk 98 (390)
T 1deq_A 70 NKLRDSLFNYQKNSKDSNTLTKNIVELMR 98 (390)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45666666666555555554444443333
No 233
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.48 E-value=1.2e+02 Score=25.93 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14557 306 ESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 306 EKQkeyLEKqLeelQ~~LrE 325 (338)
.+....++++.++++++|.+
T Consensus 95 r~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544
No 234
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.47 E-value=4.1e+02 Score=24.33 Aligned_cols=34 Identities=0% Similarity=-0.028 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKN 251 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlEre 251 (338)
+++.+.+.++..++.+..+++..+..++..++..
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566666666666666666666666666666665
No 235
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.43 E-value=5e+02 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 296 KSYEEKIKDIESEKAIILVPALKIARYLVIL 326 (338)
Q Consensus 296 eslEerIK~LEKQkeyLEKqLeelQ~~LrEl 326 (338)
+....-+..+++.+.++++.+..+-+.++++
T Consensus 206 ~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 206 EKYEKSLKELDQGTPQYMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555544433
No 236
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=24.41 E-value=5.6e+02 Score=25.86 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557 297 SYEEKIKDIESEKAIILVPALKIARYLVILIRLNTH 332 (338)
Q Consensus 297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~ 332 (338)
.+-.+++.+..+.+.+++++++++++|++++..+..
T Consensus 177 ~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ipN 212 (536)
T 3err_A 177 DMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPL 212 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 356778888899999999999999999999887654
No 237
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=24.03 E-value=2.3e+02 Score=21.30 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCA 334 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a 334 (338)
+.+=.|+.++..+..+.+.+.+--++.++.=+.++.-++.+++.-..|+
T Consensus 7 DtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~~~ 55 (61)
T 3l4f_A 7 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPA 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 3445677788888888888888888888888888888888887766554
No 238
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=23.91 E-value=59 Score=28.37 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=42.4
Q ss_pred hhhhhhhhhh-hHhhhhhcCcccHHHhhcCCcccccc----cCCCChHHHHHHHHHHhhhhhc
Q psy14557 3 KAVDMELKKE-HMSVFVLNGYEDLESFCEIKEEDLNY----LKILNPEHRAKILAAVQVMHEY 60 (338)
Q Consensus 3 ~~~e~i~L~e-y~s~~l~NGyddLe~~~~i~e~dL~e----lgI~dp~hR~rlL~Av~~L~~~ 60 (338)
.+|+.+||.. ..... +..-+||.+.+|.|..+.+ .| ...|...||.+|...|+.+
T Consensus 88 ~WLrvVgl~~esiq~i--~~~~TLe~LLemsd~evr~~L~~~g-a~eEEcrRL~~Al~nLRk~ 147 (149)
T 2lpe_A 88 DWLYIFNVRPEVVQEI--PQELTLDALLEMDEAKAKEMLRRWG-ASTEECSRLQQALTCLRKV 147 (149)
T ss_dssp TTHHHHTCCHHHHTTS--CTTCSHHHHTTSCHHHHHHHHHTTT-CCTHHHHHHHHHHTTGGGS
T ss_pred HHHHHhccCHHHHHHh--hhhccHHHHHhcCHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHH
Confidence 3566677744 44444 8889999999999999877 45 3367899999999999876
No 239
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.84 E-value=1.4e+02 Score=26.60 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
+++.-+-+.+..+..++..|+++-++|+....+.++++.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777788888888888888888877777777664
No 240
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.56 E-value=1.4e+02 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 294 KVKSYEEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 294 kieslEerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
....+..+|++|+.....|.++.+.++.+|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555543
No 241
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.38 E-value=71 Score=30.08 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 285 deI~eeLeEkieslEerIK~LEKQkeyLEKq 315 (338)
..-++.|+++.+.++++|+.|++.++.+.+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4457777777778888888887777666664
No 242
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.17 E-value=1.2e+02 Score=29.67 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+|.++.+.+.++|+.|+++...+++++.+..-
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888888888777766543
No 243
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.16 E-value=1.2e+02 Score=22.39 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
+..++.+++.|+.....|..++..+..
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444443
No 244
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.12 E-value=84 Score=22.64 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=25.5
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 278 MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVP 315 (338)
Q Consensus 278 MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKq 315 (338)
=|=...+++.++++.+..+.+..++..|+.+.+.|+++
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777888888888777777777777777666654
No 245
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=23.03 E-value=1.4e+02 Score=28.15 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 298 YEEKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
.+.++..|..+...+++++.+.++.+++++++|.
T Consensus 214 Td~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~ 247 (268)
T 2yo3_A 214 TDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIY 247 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 246
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=23.02 E-value=95 Score=23.27 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=42.0
Q ss_pred hhhhhhhh-hhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhh
Q psy14557 4 AVDMELKK-EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57 (338)
Q Consensus 4 ~~e~i~L~-ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L 57 (338)
|++.+|+. .-...|...||.++|.+......+|-+|-=.+.+-=.+|..+++-+
T Consensus 8 f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 44555543 3467899999999999999999999997545787778888777654
No 247
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.97 E-value=2.4e+02 Score=22.28 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325 (338)
Q Consensus 289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE 325 (338)
++|-..+..+..++..++..+--.+++++.+.++|..
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~ 58 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3566777777778888888877777777777665543
No 248
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=22.96 E-value=4.2e+02 Score=23.92 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVPALKIARYLV 324 (338)
Q Consensus 299 EerIK~LEKQkeyLEKqLeelQ~~Lr 324 (338)
...+..+.+.+.+++..+...-+.++
T Consensus 207 ~~~v~~~n~~~~~~~~~~~~~~~~~Q 232 (337)
T 2x3v_A 207 EKVLEDVGKTTPQYMEGMEQVFEQCQ 232 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566666666666655544444
No 249
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.78 E-value=1.1e+02 Score=28.77 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL 327 (338)
..+|+.+...+..+.+.|....+.+.+++..++++|..+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666666666666666666666666666666554
No 250
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=22.62 E-value=2.2e+02 Score=21.53 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=26.1
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 281 KTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKI 319 (338)
Q Consensus 281 ltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeel 319 (338)
+.+|.+|+..--+=++.+..+++.|+.....|+..+++.
T Consensus 38 k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 38 KLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347888887777777666666666666666666655544
No 251
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.30 E-value=73 Score=24.96 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14557 299 EEKIKDIESEKAIILVP 315 (338)
Q Consensus 299 EerIK~LEKQkeyLEKq 315 (338)
+.+-..|+.+...++.+
T Consensus 19 E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERS 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 33333333333333333
No 252
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.17 E-value=92 Score=24.78 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 295 VKSYEEKIKDIESEKAIILVPALKIAR 321 (338)
Q Consensus 295 ieslEerIK~LEKQkeyLEKqLeelQ~ 321 (338)
.++++.+|+.|+.+...|++++.++..
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777766666544
No 253
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.86 E-value=2.6e+02 Score=23.18 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557 288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNT 331 (338)
Q Consensus 288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~ 331 (338)
-++-.+++..++.+.+..++++...-++.+.+-+.++++++.+.
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~ 130 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFV 130 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777777777777777777877654
No 254
>2cme_A ORF-9B, ORF13, hypothetical protein 5; alternative open reading frame, lipid-binding, virus assembly; HET: D10; 2.8A {Human sars coronavirus} SCOP: b.164.1.1 PDB: 2cme_B* 2cme_E* 2cme_C*
Probab=21.85 E-value=41 Score=26.01 Aligned_cols=29 Identities=41% Similarity=0.456 Sum_probs=25.4
Q ss_pred cCCCCcceeecccCCCccccccccCCCCC
Q psy14557 150 HPLPLYPITLACDSSFSGKHARNNLDSEH 178 (338)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (338)
.-+-.|||.|--.|..|-.-+|.|+||-.
T Consensus 18 ad~kvypiilrlgs~lslsm~rr~~~sl~ 46 (78)
T 2cme_A 18 ADPKVYPIILRLGSNLSLSMARRNLDSLE 46 (78)
T ss_dssp SSCCEEEEEECCSSCCEEEEEEBCCSCSS
T ss_pred cCCceeeeeeeeccccchHHHHcccchhh
Confidence 44568999999999999999999999864
No 255
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.28 E-value=1.3e+02 Score=22.85 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=30.1
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 213 SDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTL 259 (338)
Q Consensus 213 ~~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTl 259 (338)
|....+++.+++..=...+.+++..+..-+..|+.+..++.+.+-..
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44456788888888888888888888888888888887777665444
No 256
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.26 E-value=1.5e+02 Score=20.05 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 221 DKAFAELQIKMMDTKQKLKIQDIQVENF 248 (338)
Q Consensus 221 qKaf~ELQ~KlieTQQQLq~V~~Qiqql 248 (338)
++.-...|+.+.++.+|-..++.|+..+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 4555667777777777777777776654
No 257
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.08 E-value=1.3e+02 Score=18.98 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14557 218 TCGDKAFAELQIKMMDTKQKLK 239 (338)
Q Consensus 218 eELqKaf~ELQ~KlieTQQQLq 239 (338)
.|+-|.+..||.++..++.+++
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888888888877776664
No 258
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.93 E-value=3.3e+02 Score=21.96 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557 219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL 265 (338)
Q Consensus 219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL 265 (338)
|+.-.|..|..++..+.+.|+. +|.+++.++...+-...+...|
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~---EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEE---EIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHH
Confidence 5556666777766666666555 5555555555554444444333
No 259
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.78 E-value=2.6e+02 Score=23.18 Aligned_cols=49 Identities=6% Similarity=0.142 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCCchhhhhhccc
Q psy14557 227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLT-LTEIKRLQPTTNTYESVGRM 278 (338)
Q Consensus 227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLT-lkELekLPeDTkVYKSVGRM 278 (338)
|..+...++.+++.+..++..+++.++...-. ..+|..| ..-||+|++.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~L---I~KWr~asq~ 54 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTL---IQKWKNAAQQ 54 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH---HHHHHHHHHH
Confidence 33333444444444444444444444333221 3456666 6778888875
No 260
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.62 E-value=3e+02 Score=21.38 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=19.3
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 280 IKTPHPEVVVNLEKKVKSYEEKIKDIESEK 309 (338)
Q Consensus 280 VltdKdeI~eeLeEkieslEerIK~LEKQk 309 (338)
+....+.+..+.......+..+|+.|++.-
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666677777777777766543
No 261
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.60 E-value=2.4e+02 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557 290 NLEKKVKSYEEKIKDIESEKAIILVPALKIA 320 (338)
Q Consensus 290 eLeEkieslEerIK~LEKQkeyLEKqLeelQ 320 (338)
++..+.+.++.+-..|+.+...++.++++.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666554
No 262
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.49 E-value=3.9e+02 Score=22.54 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557 287 VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR 328 (338)
Q Consensus 287 I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr 328 (338)
+...|+++......+++.|+...+.|..+|++...++.++-+
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444555555555555555555555544433
Done!