RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14557
(338 letters)
>gnl|CDD|188958 cd09559, SAM_SASH1_repeat1, SAM domain of SASH1 proteins, repeat
1. SAM (sterile alpha motif) repeat 1 of SASH1
proteins is a predicted protein-protein interaction
domain. Members of this subfamily are putative adaptor
proteins. They appear to mediate signal transduction.
SASH1 can bind 14-3-3 proteins in response to
IGF1/phosphatidylinositol 3-kinase signaling. SASH1 was
found upregulated in different tissues including
thymus, placenta, lungs and downregulated in some
breast tumors, liver metastases and colon cancers,
relative to corresponding normal tissues. SASH1 is a
potential candidate for a tumor suppressor gene in
breast cancers. At the same time, downregulation of
SASH1 in colon cancer is associated with metastasis and
a poor prognosis.
Length = 66
Score = 59.3 bits (143), Expect = 1e-11
Identities = 28/51 (54%), Positives = 40/51 (78%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61
KEHM F+ NGYEDL++F ++EEDL+ L I +PEHRA +L AV+++ EY+
Sbjct: 16 KEHMPTFLFNGYEDLDTFKLLEEEDLDELNIRDPEHRAVLLTAVELLQEYD 66
>gnl|CDD|188892 cd09493, SAM_SASH-like, SAM (Sterile alpha motif ), SASH1-like.
SAM (sterile alpha motif) domain of SASH1-like proteins
is a protein-protein interaction domain. Members of
this subfamily are putative adaptor proteins. They
appear to mediate signal transduction. Proteins of this
subfamily are known to be involved in preventing DN
thymocytes from premature initiation of programmed cell
death and in B cells activation and differentiation.
They have been found downregulated in some breast
tumors, liver metastases and colon cancers if compare
to corresponding normal tissues.
Length = 60
Score = 59.1 bits (143), Expect = 1e-11
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
+EH S +LNGYE LE F ++KE LN L I +PEHRAK+L A +
Sbjct: 15 QEHTSTLLLNGYETLEDFKDLKESHLNELNITDPEHRAKLLTAAE 59
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 59.6 bits (145), Expect = 3e-11
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHP 285
EL K +Q+L++ Q++ + +L L E++ L T Y+ +G + +K
Sbjct: 2 ELINKFQQLQQQLQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDKE 61
Query: 286 EVVVNLEKKVKSYEEKIKDIESEK 309
EV LE++ ++ E++IK +E +
Sbjct: 62 EVKEELEERKETLEKEIKTLEKQL 85
>gnl|CDD|188959 cd09560, SAM_SASH3, SAM domain of SASH3 subfamily. SAM (sterile
alpha motif) domain of SAHS3 (also known as SLY)
proteins is a predicted protein-protein interaction
domain. Members of this subfamily are putative
signaling/adaptor proteins. In addition to SAM, they
contain SLY and SH3 domains. They appear to mediate
signal transduction in lymphoid tissues. Murine SASH3
is involved in preventing DN thymocytes from premature
initiation of programmed cell death and in mTOR
(mammalian target of rapamycin) activation via signal
integration of the Notch receptor and preTCR (T cell
receptor) pathways.
Length = 68
Score = 51.2 bits (122), Expect = 8e-09
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61
+EH S +LNGY+ LE F E++E LN L I++P+HRAK+L A +++ +Y+
Sbjct: 18 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYD 68
>gnl|CDD|188926 cd09527, SAM_Samd5, SAM domain of Samd5 subfamily. SAM (sterile
alpha motif) domain of Samd5 subfamily is a putative
protein-protein interaction domain. Proteins of this
subfamily have a SAM domain at the N-terminus. SAM is a
widespread domain in signaling and regulatory proteins.
In many cases SAM mediates
dimerization/oligomerization. The exact function of
proteins belonging to this subfamily is unknown.
Length = 63
Score = 46.3 bits (110), Expect = 4e-07
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 17 FVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
FV NGY+DLE +I + DL+ + ++NP HR +IL AV+ + E
Sbjct: 21 FVDNGYDDLEVCKQIGDPDLDAIGVMNPAHRKRILEAVRRLKE 63
>gnl|CDD|188960 cd09561, SAM_SAMSN1, SAM domain of SAMSN1 subfamily. SAM
(sterile alpha motif) domain of SAMSN1 (also known as
HACS1 or NASH1) proteins is a predicted protein-protein
interaction domain. Members of this group are putative
signaling/adaptor proteins. They appear to mediate
signal transduction in lymphoid tissues. Murine HACS1
protein likely plays a role in B cell activation and
differentiation. Potential binding partners of HACS1
are SLAM, DEC205 and PIR-B receptors and also some
unidentified tyrosine-phosphorylated proteins. Proteins
of this group were found preferentially expressed in
normal hematopietic tissues and in some malignancies
including lymphoma, myeloid leukemia and myeloma.
Length = 66
Score = 45.6 bits (108), Expect = 8e-07
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
+E+ S +LNGYE LE ++KE L L I +PE RA++L+A +
Sbjct: 18 QEYTSTLLLNGYETLEDLKDLKESHLIELNITDPEDRARLLSAAE 62
>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif. Widespread domain in
signalling and nuclear proteins. In EPH-related
tyrosine kinases, appears to mediate cell-cell
initiated signal transduction via the binding of
SH2-containing proteins to a conserved tyrosine that is
phosphorylated. In many cases mediates
homodimerisation.
Length = 68
Score = 42.7 bits (101), Expect = 8e-06
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+++ F NG + EEDL L I HR KIL A+Q +
Sbjct: 19 EQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKL 65
>gnl|CDD|238345 cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin is a hexameric
molecular chaperone complex, composed of two
evolutionarily related subunits (alpha and beta), which
are found in both eukaryotes and archaea. Prefoldin
binds and stabilizes newly synthesized polypeptides
allowing them to fold correctly. The hexameric
structure consists of a double beta barrel assembly with
six protruding coiled-coils. The alpha prefoldin
subunits have two beta hairpin structures while the beta
prefoldin subunits (this CD) have only one hairpin that
is most similar to the second hairpin of the alpha
subunit. The prefoldin hexamer consists of two alpha and
four beta subunits and is assembled from the beta
hairpins of all six subunits. The alpha subunits
initially dimerize providing a structural nucleus for
the assembly of the beta subunits. In archaea, there is
usually only one gene for each subunit while in
eukaryotes there two or more paralogous genes encoding
each subunit adding heterogeneity to the structure of
the hexamer.
Length = 105
Score = 41.2 bits (97), Expect = 7e-05
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 241 QDIQVENFKKNKHHTQLT-----LTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295
Q +Q ++ K QL L E+++L Y+ VG + +K E L++++
Sbjct: 13 QQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERL 72
Query: 296 KSYEEKIKDIESEKAII 312
++ E +IK +E ++ +
Sbjct: 73 ETIELRIKRLERQEEDL 89
>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational
modification, protein turnover, chaperones].
Length = 119
Score = 41.1 bits (97), Expect = 1e-04
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPH 284
A+LQ ++ QK+ +Q Q+E K + L E+++L Y+ VG + +K
Sbjct: 13 AQLQ-QLQQQLQKVILQKQQLEAQLKE---IEKALEELEKLDEDAPVYKKVGNLLVKVSK 68
Query: 285 PEVVVNLEKKVKSYEEKIKDIESEKAII 312
E V LE++ ++ E +IK +E ++ +
Sbjct: 69 EEAVDELEERKETLELRIKTLEKQEEKL 96
>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif). It has been
suggested that SAM is an evolutionarily conserved
protein binding domain that is involved in the
regulation of numerous developmental processes in
diverse eukaryotes. The SAM domain can potentially
function as a protein interaction module through its
ability to homo- and heterooligomerise with other SAM
domains.
Length = 62
Score = 39.1 bits (92), Expect = 1e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
++ F GY D ++ + EEDL L + P HR KIL+++Q +
Sbjct: 16 GQYADNF-RAGYIDGDALLLLTEEDLLKLGVTLPGHRKKILSSIQGLK 62
>gnl|CDD|188898 cd09499, SAM_AIDA1AB-like_repeat1, SAM domain of AIDA1AB-like
proteins, repeat 1. SAM (sterile alpha motif) domain
repeat 1 of AIDA1AB-like proteins is a protein-protein
interaction domain. AIDA1AB-like proteins have two
tandem SAM domains. They may form an intramolecular
head-to-tail homodimer. One of two basic motifs of the
nuclear localization signal (NLS) is located within
helix 5 of SAM2 (motif HKRK). This signal plays a role
in decoupling of SAM2 from SAM1, thus facilitating
translocation of this type proteins into the nucleus.
SAM1 domain has a potential phosphorylation site for
CMGC group of serine/threonine kinases. SAM domains of
the AIDA1-like subfamily can directly bind ubiquitin
and participate in regulating the degradation of
ubiquitinated EphA receptors, particularly EPH-A8
receptor. Additionally AIDA1AB-like proteins may
participate in the regulation of nucleoplasmic coilin
protein interactions.
Length = 67
Score = 37.7 bits (88), Expect = 4e-04
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 15 SVFVLNGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQ 55
S +LNG++D++ ++++DL + I + +HR IL A +
Sbjct: 19 SKLLLNGFDDVDFLGSGVMEDQDLKEIGITDEQHRQIILQAAR 61
>gnl|CDD|188948 cd09549, SAM_EPH-A10, SAM domain of EPH-A10 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A10 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction
domain. This domain is located in the cytoplasmic
region of EPH-A10 receptors and appears to mediate
cell-cell initiated signal transduction. It was found
preferentially expressed in the testis. EphA10 may be
involved in the pathogenesis and development of
prostate carcinoma and lymphocytic leukemia. It is a
potential molecular marker and/or therapy target for
these types of cancers.
Length = 70
Score = 37.9 bits (88), Expect = 5e-04
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 4 AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
A+D+ K++ F GY LE+ + +D+ L I + EH+ +LA +Q +
Sbjct: 16 ALDLCRYKDN---FAAAGYGSLEAVARMTAQDVLSLGITSLEHQELLLAGIQAL 66
>gnl|CDD|188890 cd09491, SAM_Ship2, SAM domain of Ship2 lipid phosphatase
proteins. SAM (sterile alpha motif) domain of Ship2
subfamily is a protein-protein interaction domain.
Ship2 proteins are lipid phosphatases
(Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase
2) containing an N-terminal SH2 domain, a central
phosphatase domain and a C-terminal SAM domain. Ship2
is involved in a number of PI3K signaling pathways. For
example, it plays a role in regulation of the actin
cytoskeleton remodeling, in insulin signaling pathways,
and in EphA2 receptor endocytosis. SAM domain of Ship2
can interact with SAM domain of other proteins in these
pathways, thus participating in signal transduction. In
particular, SAM of Ship2 is known to form heterodimers
with SAM domain of Eph-A2 receptor tyrosine kinase
during receptor endocytosis as well as with SAM domain
of PI3K effector protein Arap3 in the actin
cytoskeleton signaling network. Since Ship2 plays a
role in negatively regulating insulin signaling, it has
been suggested that inhibition of its expression or
function may contribute in treating type 2 diabetes and
obesity-induced insulin resistance.
Length = 63
Score = 36.7 bits (85), Expect = 9e-04
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 20 NGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
NG++ LE +I EEDL + NP H+ ++L ++Q
Sbjct: 27 NGWDSLEFLSDITEEDLEEAGVTNPAHKRRLLDSLQ 62
>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif).
Length = 66
Score = 36.5 bits (85), Expect = 0.001
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
++ F G E + EEDL L I + HR KIL +Q +
Sbjct: 19 PQYADNFRDQGITGGELLLRLTEEDLKALGITSVGHRKKILKKIQRL 65
>gnl|CDD|188896 cd09497, SAM_caskin1,2_repeat1, SAM domain of caskin protein
repeat 1. SAM (sterile alpha motif) domain repeat 1 of
caskin1,2 proteins is a protein-protein interaction
domain. Caskin has two tandem SAM domains. Caskin
protein is known to interact with membrane-associated
guanylate kinase CASK, and apparently may play a role
in neural development, synaptic protein targeting, and
regulation of gene expression.
Length = 66
Score = 35.7 bits (83), Expect = 0.002
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
E+ F+ GY DL + + EDL + I P HR K+ + + +
Sbjct: 18 EYTPNFIKAGY-DLPTISRMTPEDLTAIGITKPGHRKKLKSEIAQLQ 63
>gnl|CDD|188944 cd09545, SAM_EPH-A4, SAM domain of EPH-A4 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A4 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction
domain. This domain is located in the cytoplasmic
region of EPH-A4 receptors and appears to mediate
cell-cell initiated signal transduction. SAM domains of
EPH-A4 receptors can form homodimers. EPH-A4 receptors
bind ligands such as erphirin A1, A4, A5. They are
known to interact with a number of different proteins,
including meltrin beta metalloprotease, Cdk5, and
EFS2alpha, however SAM domain doesn't participate in
these interactions. EPH-A4 receptors are involved in
regulation of corticospinal tract formation, in pathway
controlling voluntary movements, in formation of motor
neurons, and in axon guidance (SAM domain is not
required for axon guidance or for EPH-A4 kinase
signaling). In Xenopus embryos EPH-A4 induces loss of
cell adhesion, ventro-lateral protrusions, and severely
expanded posterior structures. Mutations in SAM domain
conserved tyrosine (Y928F) enhance the ability of
EPH-A4 to induce these phenotypes, thus supporting the
idea that the SAM domain may negatively regulate some
aspects of EPH-A4 activity. EphA4 gene was found
overexpressed in a number of different cancers
including human gastric cancer, colorectal cancer, and
pancreatic ductal adenocarcinoma. It is likely to be a
promising molecular target for the cancer therapy.
Length = 71
Score = 35.7 bits (82), Expect = 0.003
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+A+ ME K++ F GY LE+ + ++DL + I H+ KIL++VQ M
Sbjct: 11 QAIKMERYKDN---FTAAGYTTLEAVVHMNQDDLARIGISAIAHQNKILSSVQGM 62
>gnl|CDD|188887 cd09488, SAM_EPH-R, SAM domain of EPH family of tyrosine kinase
receptors. SAM (sterile alpha motif) domain of EPH
(erythropoietin-producing hepatocyte) family of
receptor tyrosine kinases is a C-terminal signal
transduction module located in the cytoplasmic region
of these receptors. SAM appears to mediate cell-cell
initiated signal transduction via binding proteins to a
conserved tyrosine that is phosphorylated. In some
cases the SAM domain mediates
homodimerization/oligomerization and plays a role in
the clustering process necessary for signaling. EPH
kinases are the largest family of receptor tyrosine
kinases. They are classified into two groups based on
their abilities to bind ephrin-A and ephrin-B ligands.
The EPH receptors are involved in regulation of cell
movement, shape, and attachment during embryonic
development; they control cell-cell interactions in the
vascular, nervous, epithelial, and immune systems, and
in many tumors. They are potential molecular markers
for cancer diagnostics and potential targets for cancer
therapy.
Length = 61
Score = 34.5 bits (80), Expect = 0.006
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 4 AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
++ M KE+ F GY L++ ++ EDL L + H+ KIL ++Q +
Sbjct: 11 SIKMGRYKEN---FTAAGYTSLDAVAQMTAEDLTRLGVTLVGHQKKILNSIQAL 61
>gnl|CDD|188899 cd09500, SAM_AIDA1AB-like_repeat2, SAM domain of AIDA1AB-like
proteins, repeat 2. SAM (sterile alpha motif) domain
repeat 2 of AIDA1AB-like proteins is a protein-protein
interaction domain. AIDA1AB-like proteins have two
tandem SAM domains. They may form an intramolecular
head-to-tail homodimer. One of two basic motifs of the
nuclear localization signal (NLS) is located within
helix 5 of the SAM2 (motif HKRK). This signal plays a
role in decoupling of SAM2 from SAM1, thus facilitating
translocation of this type proteins into the nucleus.
SAM domains of the AIDA1AB-like subfamily can directly
bind ubiquitin and participate in regulating the
degradation of ubiquitinated EphA receptors,
particularly EPH-A8 receptor. Additionally AIDA1AB-like
proteins may participate in the regulation of
nucleoplasmic coilin protein interactions.
Length = 65
Score = 33.4 bits (77), Expect = 0.017
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 17 FVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAV 54
F+ +GY +E I E +L N L+I HR +ILA++
Sbjct: 24 FLKHGYTSMERVKRIWEVELTNVLEINKLGHRKRILASL 62
>gnl|CDD|131391 TIGR02338, gimC_beta, prefoldin, beta subunit, archaeal.
Chaperonins are cytosolic, ATP-dependent molecular
chaperones, with a conserved toroidal architecture, that
assist in the folding of nascent and/or denatured
polypeptide chains. The group I chaperonin system
consists of GroEL and GroES, and is found (usually) in
bacteria and organelles of bacterial origin. The group
II chaperonin system, called the thermosome in Archaea
and TRiC or CCT in the Eukaryota, is structurally
similar but only distantly related. Prefoldin, also
called GimC, is a complex in Archaea and Eukaryota, that
works with group II chaperonins. Members of this protein
family are the archaeal clade of the beta class of
prefoldin subunit. Closely related, but outside the
scope of this family are the eukaryotic beta-class
prefoldin subunits, Gim-1,3,4 and 6. The alpha class
prefoldin subunits are more distantly related.
Length = 110
Score = 33.1 bits (76), Expect = 0.044
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 236 QKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295
Q + Q QVE K + L E++RL T Y+SVG + +KT E + L++K
Sbjct: 20 QAVATQKQQVEAQLKE---AEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKK 76
Query: 296 KSYEEKIKDIE 306
++ E ++K ++
Sbjct: 77 ETLELRVKTLQ 87
>gnl|CDD|188941 cd09542, SAM_EPH-A1, SAM domain of EPH-A1 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A1 subfamily of the receptor tyrosine kinases is a
C-terminal protein-protein interaction domain. This
domain is located in the cytoplasmic region of EPH-A1
receptors and appears to mediate cell-cell initiated
signal transduction. Activation of these receptors
leads to inhibition of cell spreading and migration in
a RhoA-ROCK-dependent manner. EPH-A1 receptors are
known to bind ILK (integrin-linked kinase) which is the
mediator of interactions between integrin and the actin
cytoskeleton. However SAM is not sufficient for this
interaction; it rather plays an ancillary role. SAM
domains of Eph-A1 receptors do not form homo/hetero
dimers/oligomers. EphA1 gene was found expressed widely
in differentiated epithelial cells. In a number of
different malignant tumors EphA1 genes are
downregulated. In breast carcinoma the downregulation
is associated with invasive behavior of the cell.
Length = 63
Score = 31.9 bits (72), Expect = 0.055
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
K ++ F G + +E E+ EDL + I P H+ +IL ++Q
Sbjct: 17 KRYILHFRSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQ 61
>gnl|CDD|188949 cd09550, SAM_EPH-A8, SAM domain of EPH-A8 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A8 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction
domain. This domain is located in the cytoplasmic
region of EPH-A8 receptors and appears to mediate
cell-cell initiated signal transduction. EPH-A8
receptors are involved in ligand dependent (ephirin A2,
A3, A5) regulation of cell adhesion and migration, and
in ligand independent regulation of neurite outgrowth
in neuronal cells. They perform signaling in kinase
dependent and kinase independent manner. EPH-A8
receptors are known to interact with a number of
different proteins including PI 3-kinase and AIDA1-like
subfamily SAM repeat domain containing proteins.
However other domains (not SAM) of EPH-A8 receptors are
involved in these interactions.
Length = 65
Score = 31.4 bits (71), Expect = 0.084
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 4 AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
++ M K+H F GY L + ED+ L I H+ KIL ++QVM
Sbjct: 11 SIKMGRYKDH---FAAGGYSSLGMVMRMNIEDIRRLGITLMGHQKKILTSIQVM 61
>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif ). SAM
(Sterile Alpha Motif) domain is a module consisting of
approximately 70 amino acids. This domain is found in
the Fungi/Metazoa group and in a restricted number of
bacteria. Proteins with SAM domains are represented by
a wide variety of domain architectures and have
different intracellular localization, including
nucleus, cytoplasm and membranes. SAM domains have
diverse functions. They can interact with proteins,
RNAs and membrane lipids, contain site of
phosphorylation and/or kinase docking site, and play a
role in protein homo and hetero
dimerization/oligomerization in processes ranging from
signal transduction to regulation of transcription.
Mutations in SAM domains have been linked to several
diseases.
Length = 56
Score = 31.1 bits (71), Expect = 0.095
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
++ +F N D ++ + +EDL L I +P HR KIL A+Q
Sbjct: 13 QYADLFRKN-EIDGDALLLLTDEDLKELGITSPGHRKKILRAIQ 55
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 34.0 bits (78), Expect = 0.11
Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 22/163 (13%)
Query: 58 HEYESPDEDEESSLDEDDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSSLPYLT 117
H+ + ++DE S D SS A NN S +D + + S+T SNN
Sbjct: 41 HDSKKSNDDETSK---DTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYK 97
Query: 118 YKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSFSGKHARNNLDSE 177
P + + + +D + LIQ+ L +S S N SE
Sbjct: 98 NLPQTNINQLLTK-----NKYDDNYSLTTLIQNLFNL-------NSDISDYEQPRN--SE 143
Query: 178 HSTDDTRSTNTTSTTIV-----SNNSSLINHKGDLISTEVSDT 215
ST+D+ + +S S N K + T
Sbjct: 144 KSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPST 186
>gnl|CDD|188945 cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A5 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction
domain. This domain is located in the cytoplasmic
region of EPH-A5 receptors and appears to mediate
cell-cell initiated signal transduction. Eph-A5 gene is
almost exclusively expressed in the nervous system.
Murine EPH-A5 receptors participate in axon guidance
during embryogenesis and play a role in the adult
synaptic plasticity, particularly in neuron-target
interactions in multiple neural circuits. Additionally
EPH-A5 receptors and its ligand ephrin A5 regulate
dopaminergic axon outgrowth and influence the formation
of the midbrain dopaminergic pathways. EphA5 gene
expression was found decreased in a few different
breast cancer cell lines, thus it might be a potential
molecular marker for breast cancer carcinogenesis and
progression.
Length = 66
Score = 30.3 bits (68), Expect = 0.24
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 13 HMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+ +F+ NGY +++ ++ EDL L + H+ KI+ ++Q M
Sbjct: 18 YTEIFMENGYSSMDAVAQVTLEDLRRLGVTLVGHQKKIMNSIQEM 62
>gnl|CDD|188889 cd09490, SAM_Arap1,2,3, SAM domain of Arap1,2,3 (angiotensin
receptor-associated protein). SAM (sterile alpha
motif) domain of Arap1,2,3 subfamily proteins
(angiotensin receptor-associated) is a protein-protein
interaction domain. Arap1,2,3 proteins are
phosphatidylinositol-3,4,5-trisphosphate-dependent
GTPase-activating proteins. They are involved in
phosphatidylinositol-3 kinase (PI3K) signaling
pathways. In addition to SAM domain, Arap1,2,3 proteins
contain ArfGap, PH-like, RhoGAP and UBQ domains. SAM
domain of Arap3 protein was shown to interact with SAM
domain of Ship2 phosphatidylinositol-trisphosphate
phosphatase proteins. Such interaction apparently plays
a role in inhibition of PI3K regulated pathways since
Ship2 converts PI(3,4,5)P3 into PI(3,4)P2. Proteins of
this subfamily participate in regulation of signaling
and trafficking associated with a number of different
receptors (including EGFR, TRAIL-R1/DR4, TRAIL-R2/DR5)
in normal and cancer cells; they are involved in
regulation of actin cytoskeleton remodeling, cell
spreading and formation of lamellipodia.
Length = 63
Score = 28.8 bits (65), Expect = 0.64
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 17 FVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
F +GY I + L + I HR +IL + ++
Sbjct: 22 FREHGYVTATDCQGINDSRLKQIGISPTGHRRRILKQLPIIT 63
>gnl|CDD|188897 cd09498, SAM_caskin1,2_repeat2, SAM domain of caskin protein
repeat 2. SAM (sterile alpha motif) domain repeat 2 of
caskin1,2 proteins is a protein-protein interaction
domain. Caskin has two tandem SAM domains. Caskin
protein is known to interact with membrane-associated
guanylate kinase CASK, and may play a role in neural
development, synaptic protein targeting, and regulation
of gene expression.
Length = 71
Score = 28.8 bits (65), Expect = 0.66
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
++ V V NGY+ ++ ++ EDL + I H+ K++ A++ + + +
Sbjct: 21 QYHKVLVENGYDSIDFVTDLTWEDLQDIGITKLGHQKKLMLAIKKLKDLQK 71
>gnl|CDD|188947 cd09548, SAM_EPH-A7, SAM domain of EPH-A7 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A7 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction
domain. This domain is located in the cytoplasmic
region of EPH-A7 receptors and appears to mediate
cell-cell initiated signal transduction. EphA7 was
found expressed in human embryonic stem (ES) cells,
neural tissues, kidney vasculature. EphA7 knockout mice
show decrease in cortical progenitor cell death at
mid-neurogenesis and significant increase in cortical
size. EphA7 may be involved in the pathogenesis and
development of different cancers; in particular, EphA7
was found upregulated in glioblastoma and downregulated
in colorectal cancer and gastric cancer. Thus, it is a
potential molecular marker and/or therapy target for
these types of cancers.
Length = 70
Score = 28.8 bits (64), Expect = 0.71
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+A+ ME K++ F GY LES + ED+ L I H+ KI++++Q M
Sbjct: 15 EAIKMERYKDN---FTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTM 66
>gnl|CDD|238914 cd01939, Ketohexokinase, Ketohexokinase (fructokinase, KHK)
catalyzes the phosphorylation of fructose to
fructose-1-phosphate (F1P), the first step in the
metabolism of dietary fructose. KHK can also
phosphorylate several other furanose sugars. It is
found in higher eukaryotes where it is believed to
function as a dimer and requires K(+) and ATP to be
active. In humans, hepatic KHK deficiency causes
fructosuria, a benign inborn error of metabolism.
Length = 290
Score = 30.1 bits (68), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 97 RSTNTTSTTIVSNNSSLPYLTYK 119
RS TTIV++N+ LP +TY
Sbjct: 97 RSRAGGRTTIVNDNN-LPEVTYD 118
>gnl|CDD|163580 TIGR03868, F420-O_ABCperi, proposed F420-0 ABC transporter,
periplasmic F420-0 binding protein. This small clade of
ABC-type transporter periplasmic binding protein
components is found as a three gene cassette along with
a permease (TIGR03869) and an ATPase (TIGR03873). The
organisms containing this cassette are all
Actinobacteria and all contain numerous genes requiring
the coenzyme F420. This model was defined based on five
such organisms, four of which are lacking all F420
biosynthetic capability save the final side-chain
polyglutamate attachment step (via the gene cofE:
TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this periplasmic binding protein is a
component of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 287
Score = 30.2 bits (68), Expect = 1.5
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 270 NTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVI 325
+T+ + + P+V+V ++ S E+KI+ +ES A + A++ RY+V+
Sbjct: 207 DTWTPMSWEAVVDADPDVIVLVDSAWNSAEKKIEVLESNPATSNLTAVQEQRYVVV 262
>gnl|CDD|188953 cd09554, SAM_EPH-B4, SAM domain of EPH-B4 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-B4 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction
domain. This domain is located in the cytoplasmic
region of EPH-B4 receptors and appears to mediate
cell-cell initiated signal transduction. EPH-B4 protein
kinase performs kinase-dependent and kinase-independent
functions. These receptors play a role in the regular
vascular system development during embryogenesis. They
were found overexpressed in a variety of cancers,
including carcinoma of the head and neck, ovarian
cancer, bladder cancer, and downregulated in bone
myeloma. Thus, EphB4 is a potential biomarker and a
target for drug design.
Length = 67
Score = 27.9 bits (62), Expect = 1.7
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+A+ ME ++ F+ G+ + +I EDL + + H+ KIL+++Q M
Sbjct: 11 RAIKMERYEDS---FLQAGFTTFQLVSQISTEDLLRMGVTLAGHQKKILSSIQAM 62
>gnl|CDD|188920 cd09521, SAM_ASZ1, SAM domain of ASZ1 subfamily. SAM (sterile
alpha motif) domain of ASZ1 (Ankyrin, SAM, leucine
Zipper) also known as GASZ (Germ cell-specific Ankyrin,
SAM, leucine Zipper) subfamily is a potential
protein-protein interaction domain. Proteins of this
group are involved in the repression of transposable
elements during spermatogenesis, oogenesis, and
preimplantation embryogenesis. They support synthesis
of PIWI-interacting RNA via association with some PIWI
proteins, such as MILI and MIWI. This association is
required for initiation and maintenance of
retrotransposon repression during the meiosis. In mice
lacking ASZ1, DNA damage and delayed germ cell
maturation was observed due to retrotransposons
releasing from their repressed state.
Length = 64
Score = 27.3 bits (61), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 31 IKEEDLNYLKILNPEHRAKILAAVQVMH 58
+ EEDL + I P + KIL A++ +H
Sbjct: 37 MTEEDLEKIGITQPGDQKKILDAIKEVH 64
>gnl|CDD|188954 cd09555, SAM_EPH-B6, SAM domain of EPH-B6 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-B6 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction
domain. This domain is located in the cytoplasmic
region of EPH-B6 receptors and appears to mediate
cell-cell initiated signal transduction. Receptors of
this type are highly expressed in embryo and adult
nervous system, in thymus and also in T-cells. They are
involved in regulation of cell adhesion and migration.
(EPH-B6 receptor is unusual; it fails to show catalytic
activity due to alteration in kinase domain). EPH-B6
may be considered as a biomarker in some types of
tumors; EPH-B6 activates MAP kinase signaling in lung
adenocarcinoma, suppresses metastasis formation in
non-small cell lung cancer, and slows invasiveness in
some breast cancer cell lines.
Length = 69
Score = 27.2 bits (60), Expect = 2.9
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 4 AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60
A+ +E +++ S F L + D+ ++ EDL L I H+ K+L +Q++ ++
Sbjct: 15 AIGLECYQDNFSKFGLCTFSDVA---QLSLEDLPALGITLAGHQKKLLHHIQLLQQH 68
>gnl|CDD|152616 pfam12181, MogR_DNAbind, DNA binding domain of the motility gene
repressor (MogR). This domain family is found in
bacteria, and is approximately 150 amino acids in
length. MogR is involved in repression of transcription
of the flagellar gene in Listeria bacteria. This allows
a phenotypical switch from an extracellular bacterium to
an intracellular pathogen. MogR binds AT rich flagellar
gene promoter regions upstream of the flagellar gene.
These regions follow the pattern 5'-TTTTNNNNNAAAA-3'.
This domain is the DNA binding domain of MogR.
Length = 148
Score = 28.4 bits (63), Expect = 3.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTT 269
F + + ++ +T KLK ++I EN K K + T +K Q T
Sbjct: 100 FPKTESQLQNTYYKLKKEEIPFENIPKQKPGRKRKYTPVKETQKET 145
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 29.4 bits (67), Expect = 3.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 279 FIKTPH---PEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316
FI P P++ LE+ VK Y+ I + ++A L PA
Sbjct: 257 FISVPETEGPKLAAALEEHVKEYDVDI--MNLQRASKLEPA 295
>gnl|CDD|224999 COG2088, SpoVG, Uncharacterized protein, involved in the
regulation of septum location [Cell envelope
biogenesis, outer membrane].
Length = 95
Score = 27.4 bits (61), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 42 LNPEHRAKILAAVQVMHEYESPDEDEESSLDE 73
+N + R KI AV +E + + S DE
Sbjct: 64 INSDTREKIQDAVLKEYERLDEEAEAVSEADE 95
>gnl|CDD|220427 pfam09825, BPL_N, Biotin-protein ligase, N terminal. The function
of this structural domain is unknown. It is found to the
N terminus of the biotin protein ligase catalytic
domain.
Length = 364
Score = 28.8 bits (65), Expect = 4.4
Identities = 11/66 (16%), Positives = 23/66 (34%)
Query: 59 EYESPDEDEESSLDEDDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSSLPYLTY 118
E + E DE+D+ + ++ D+ +D T + ++ +P
Sbjct: 292 ELTTKVGGSEYLEDENDTFRFEEGDSSSEDASSPLEDVDPEAVPKTILFPHDEDVPSSKL 351
Query: 119 KPNFHF 124
P F
Sbjct: 352 TPYFDH 357
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 28.7 bits (64), Expect = 4.8
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 233 DTKQKLKIQDIQVENFKKN----KHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVV 288
++KLK ++++EN KK + +TL EI+RL N + +
Sbjct: 187 YLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE--L 244
Query: 289 VNLEKKVKSYEEKIKDIESEKAIILVPALKI 319
+LE YE +IK ES+ ++ L
Sbjct: 245 SSLEDMKNRYESEIKTAESDLSMELEKNNYY 275
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 28.2 bits (63), Expect = 5.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 42 LNPEHRAKILAAVQVMHEYESPD 64
L+ + RA+IL ++ H D
Sbjct: 186 LSQDLRAQILESLHQTHLIPGTD 208
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 28.6 bits (64), Expect = 6.0
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 279 FIKTPH---PEVVVNLEKKVKSYEEKIKDIESEKAIILVPA 316
FI P P++ LE VK Y+ + + ++A L PA
Sbjct: 257 FISVPETEGPKLAAALEAHVKQYDVDV--MNLQRASKLEPA 295
>gnl|CDD|238568 cd01148, TroA_a, Metal binding protein TroA_a. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions in eubacteria. They belong to
the TroA superfamily of helical backbone metal receptor
proteins that share a distinct fold and ligand binding
mechanism. A typical TroA protein is comprised of two
globular subdomains connected by a single helix and can
bind the metal ion in the cleft between these domains.
Length = 284
Score = 28.1 bits (63), Expect = 7.4
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 285 PEVVVNLE-KKVKSYEEKIKDIESEKAIILVPALKIARYLVIL 326
P+V+V ++ + E+KIK ++ A+ VPA+K R++V+
Sbjct: 224 PDVIVIIDYGDQNAAEQKIKFLKENPALKNVPAVKNNRFIVLP 266
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 27.9 bits (63), Expect = 7.9
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 261 EIKRLQPTTNTY----------ESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKA 310
E L+P Y E M + PE+ E+++K E KI+++E E
Sbjct: 41 EYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELK 100
Query: 311 IILVP 315
I+L+P
Sbjct: 101 ILLLP 105
>gnl|CDD|181787 PRK09343, PRK09343, prefoldin subunit beta; Provisional.
Length = 121
Score = 27.0 bits (60), Expect = 8.6
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 258 TLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIE 306
L E+++L T Y+ VG + +K +V L+++ + E + + +E
Sbjct: 43 ALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLE 91
>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase. The alternative oxidase is
used as a second terminal oxidase in the mitochondria,
electrons are transfered directly from reduced ubiquinol
to oxygen forming water. This is not coupled to ATP
synthesis and is not inhibited by cyanide, this pathway
is a single step process. In rice the transcript levels
of the alternative oxidase are increased by low
temperature.
Length = 214
Score = 27.6 bits (62), Expect = 9.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 14/50 (28%)
Query: 292 EKKVKSYEEKIKDIESEKAIILVPALKIA-------------RYLVILIR 328
E+ V +Y +KDIE+ K + VPA +IA R ++++IR
Sbjct: 151 EEAVVTYTHFLKDIEAGK-LPNVPAPEIAIDYWRLPELDATLRDVILVIR 199
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.0 bits (63), Expect = 9.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 286 EVVVNLEKKVKSYEEKIKDIESEKAIIL 313
E + +EK++K EE+I ++E+E +
Sbjct: 93 EELEKIEKEIKELEEEISELENEIKELE 120
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 27.8 bits (62), Expect = 9.3
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 26 ESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSLDEDDSSFSGKHARN 85
+ + + KE + +Y IL+ +I A + E DE+EE DED+ ++
Sbjct: 359 QKWTKAKETEQDY--ILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEG-----PSKE 411
Query: 86 NLDSEHSTDDTRSTNTTSTTIVSNNSSLPYLTYKPNFHFV 125
+ D E +D + + NSSL + YK + +V
Sbjct: 412 HSDDEEFEEDDVESKYEDS---DGNSSLA-VGYKNDRSYV 447
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,305,785
Number of extensions: 1513414
Number of successful extensions: 1537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 67
Length of query: 338
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 240
Effective length of database: 6,590,910
Effective search space: 1581818400
Effective search space used: 1581818400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)