RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14557
(338 letters)
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical
protein, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 78
Score = 69.0 bits (169), Expect = 3e-15
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
+E+ S +LNGYE L+ +IKE L L I +PE RA++L+A + + S
Sbjct: 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS 76
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 56.0 bits (135), Expect = 2e-10
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+ V NG++DLE +I EEDL + +P H+ +L +Q+
Sbjct: 40 RYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLS 85
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 55.2 bits (133), Expect = 3e-10
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
+A+ M + F G+ E +I EDL + + H+ KILA+VQ M
Sbjct: 23 RAIKMG---RYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAK 79
Query: 63 P 63
P
Sbjct: 80 P 80
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 54.8 bits (132), Expect = 6e-10
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
++ F+ G+ L+ ++ EDL + I H+ KIL ++ M S +S
Sbjct: 36 QYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQSPTAMAS 94
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: a.60.1.2
Length = 81
Score = 54.4 bits (131), Expect = 6e-10
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
++ M + F GY L + +D+ L I H+ KIL ++Q M
Sbjct: 15 DSIRMG---RYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRA 68
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 54.2 bits (130), Expect = 1e-09
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 12 EHMSVFVLNGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDED 66
++ S +LNG++D+ ++E+DL + I +P+HR K+L A + + + ++ D
Sbjct: 43 QYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKVKALGYD 99
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 54.5 bits (131), Expect = 1e-09
Identities = 17/81 (20%), Positives = 41/81 (50%)
Query: 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHP 285
+ ++ +Q+L++ Q + + + L EI+ L Y++VG + +KT
Sbjct: 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKD 69
Query: 286 EVVVNLEKKVKSYEEKIKDIE 306
+ V L++K+++ E ++ +E
Sbjct: 70 KAVAELKEKIETLEVRLNALE 90
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling
protein; 2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 54.7 bits (131), Expect = 2e-09
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60
++ V V NGYE+++ +I EDL + I H+ K++ AV+ + E
Sbjct: 93 QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAEL 141
Score = 35.8 bits (82), Expect = 0.007
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSL 71
+ F+ GY DL + + EDL + + P HR KI A + + + E + ++L
Sbjct: 24 LYAPNFISAGY-DLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSIPDWLPEHKPANL 82
Query: 72 DE 73
Sbjct: 83 AV 84
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 52.9 bits (127), Expect = 2e-09
Identities = 8/52 (15%), Positives = 25/52 (48%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
++ F+ GY +E ++ +D+ + + P H+ +I ++ + + +
Sbjct: 26 QYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVNT 77
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 53.0 bits (127), Expect = 2e-09
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
+A+ M+ + F GY LE+ + ++DL + I H+ KIL++VQ M
Sbjct: 34 QAIKMD---RYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT 87
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 52.5 bits (126), Expect = 2e-09
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
+A+ M ++ F G+ + ++ ED+ + + H+ KIL ++QVM
Sbjct: 19 EAIKMG---QYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRA 72
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing
protein 3; SAM domain, helix bundle, cell membrane, cell
projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 52.6 bits (126), Expect = 4e-09
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSL 71
++ F +G + + E+L L I HR +IL +Q E S D +S++
Sbjct: 40 QYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDPKSDSAM 99
Query: 72 D 72
+
Sbjct: 100 E 100
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell
signaling, angiogenesis, apopt ATP-binding, cataract;
NMR {Homo sapiens}
Length = 82
Score = 51.0 bits (122), Expect = 8e-09
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
++ F+ GY +E ++ +D+ + + P H+ +I ++ + +
Sbjct: 30 QYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 77
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics,
structural genomics consortium, SGC, alternative
splicing, ATP-binding; 2.10A {Homo sapiens}
Length = 90
Score = 51.0 bits (122), Expect = 1e-08
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
+ F GY LES + ED+ L I H+ KI++++Q M
Sbjct: 39 RYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRA 86
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase,
nucleotide-binding, transferase, tyrosine-protein
kinase, signal, sterIle alpha motif; 2.40A {Homo
sapiens}
Length = 86
Score = 50.6 bits (121), Expect = 1e-08
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
++ F+ GY +E ++ +D+ + + P H+ +I ++ + +
Sbjct: 35 QYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 82
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 49.8 bits (119), Expect = 2e-08
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 12 EHMSVFVLNGYEDLE--SFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
++ + + NG+++++ ++++DL + ILN HR +IL A+Q++ S
Sbjct: 26 QYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSGPSS 79
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase,
nucleotide-binding, transferase, tyrosine-protein
kinase, signal, sterIle alpha motif; 2.00A {Homo
sapiens} PDB: 3kka_A
Length = 82
Score = 49.8 bits (119), Expect = 2e-08
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
++ F G + +E E+ EDL + I P H+ +IL ++Q
Sbjct: 37 RYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal
transduction, SAM domain, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: a.60.1.2
Length = 91
Score = 49.9 bits (119), Expect = 2e-08
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
+++ F +G+ ++ I + L + I HR +IL +Q++
Sbjct: 29 QYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILS 76
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 49.9 bits (119), Expect = 3e-08
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 12 EHMSVFVLNGYEDLE--SFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEE- 68
++ + + NG+++++ ++++DL + ILN HR +IL A+Q++ + D
Sbjct: 36 QYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYH 95
Query: 69 -SSLDE 73
+S+ E
Sbjct: 96 PTSVAE 101
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 97
Score = 49.5 bits (118), Expect = 4e-08
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 4 AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
++ + + G+ L + L I H K+L+A ++ P
Sbjct: 32 SIGLPMYAGT---LSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGP 88
Query: 64 D 64
+
Sbjct: 89 E 89
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 47.1 bits (111), Expect = 9e-07
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQ 55
++ F++NGY ++ +I E +L N LKI HR +ILA++
Sbjct: 102 DYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG 146
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB:
1fxk_B
Length = 107
Score = 39.5 bits (92), Expect = 2e-04
Identities = 17/81 (20%), Positives = 37/81 (45%)
Query: 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHP 285
+ +Q+ + +Q + + + TQ L E+ R Y+S G + I+
Sbjct: 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKD 64
Query: 286 EVVVNLEKKVKSYEEKIKDIE 306
E+ L++K+++ + + K IE
Sbjct: 65 ELTEELQEKLETLQLREKTIE 85
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 36.2 bits (84), Expect = 0.001
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
EH F + + + +ED L + HR I A++ +
Sbjct: 21 EHRDRFEDHEI-EGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGSRRH 71
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 37.9 bits (87), Expect = 0.003
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES-PDEDEESS 70
++ + F D + +DL LK+++ H I A+QV+ P+
Sbjct: 106 QYKTQFDEGRV-DGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRP 164
Query: 71 LDEDDSS 77
DE+ +
Sbjct: 165 SDENSIT 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.005
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 292 EKK-VKSYEEKIKDIESEKAIILVPALKI 319
EK+ +K + +K + A PAL I
Sbjct: 18 EKQALKKLQASLKLYADDSA----PALAI 42
Score = 30.3 bits (67), Expect = 0.52
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 13/36 (36%)
Query: 261 EIKRLQPTTNTYESVGRMFIKTPH--PEVVVN--LE 292
+K+LQ + Y P + + +E
Sbjct: 21 ALKKLQASLKLYA---------DDSAPALAIKATME 47
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain
complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 33.6 bits (77), Expect = 0.010
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDE 67
+++ F + I ++L L + H+ IL AV ++ E E
Sbjct: 25 QYIKNFEREKI-SGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGLETE 79
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 33.2 bits (76), Expect = 0.017
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
+++ F + I ++L L + H+ IL AV
Sbjct: 29 QYIKNFEREKI-SGDQLLRITHQELEDLGVSRIGHQELILEAVD 71
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 33.1 bits (76), Expect = 0.017
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+++S F E ++ L L + + + RA + ++ M
Sbjct: 23 QYVSEFSAQNI-SGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEM 67
>3k1r_B Usher syndrome type-1G protein; protein-protein complex,
alternative splicing, coiled coil, deafness, hearing,
non-syndromic deafness, polymorphism; 2.30A {Homo
sapiens}
Length = 74
Score = 32.8 bits (75), Expect = 0.017
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE-YESPDEDEESS 70
+ ++ DLE+ + DL + + R KIL AV+ + E P E++
Sbjct: 16 DFAALLRQEKI-DLEALMLCSDLDLRSISV-PLGPREKILGAVRRRRQAMERPPALEDTE 73
Query: 71 L 71
L
Sbjct: 74 L 74
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 32.3 bits (74), Expect = 0.028
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
E+ +F + ++ DL L + H +IL ++
Sbjct: 26 EYKDIFTRHDI-RGSGLLHLERRDLKDLGVTKVGHMKRILCGIK 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.38
Identities = 25/177 (14%), Positives = 60/177 (33%), Gaps = 46/177 (25%)
Query: 173 NLDSEHSTDDTRSTNTTSTTIVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQI-KM 231
N D + D +S ++S E D ++ D L++
Sbjct: 32 NFDCKDVQDMPKS---------------------ILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR--LQPTTNT--YES-VGRMF----IKT 282
+ +KQ+ +Q E + N + ++ IK QP+ T Y R++ +
Sbjct: 71 LLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIIL---------VPALKIARYLVILIRLN 330
+ V+ + + + ++ K +++ AL + + +++
Sbjct: 128 KYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Score = 31.0 bits (69), Expect = 0.60
Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 71/221 (32%)
Query: 14 MSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSLDE 73
S+ VL E + F + L + P A I + + ++ D +++
Sbjct: 361 SSLNVLEPAEYRKMF--------DRLSVF-PPS-AHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 74 D-DSSFSGKHARNNLDSEHS-TDDTRSTNTTSTT----IV----------SNNSSLP--- 114
S K + + S S + + IV S++ P
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 115 -----YLTYKPNFHFV-------FDIFPGI-------------CRTSNQNDGHKAGVLIQ 149
++ + H +F + T+ G L Q
Sbjct: 471 QYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 150 HPLPLYP--ITLACDS---------SFSGKHARNNLDSEHS 179
L Y I F K N + S+++
Sbjct: 527 --LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 30.2 bits (67), Expect = 1.2
Identities = 49/366 (13%), Positives = 93/366 (25%), Gaps = 125/366 (34%)
Query: 35 DLNYLKILNP-EHRAKIL---------AAVQVMHEYESPDEDEESSLDEDDS-------- 76
++ K N KIL + + +L D+
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 77 -------------------SFSGKHARNNLDS----EHSTDDTRSTNTTSTTIVSNNSSL 113
S + R+ L + +H D +T I SSL
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTII---ESSL 363
Query: 114 PYLT---YKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPI------------- 157
L Y+ F +FP I P L +
Sbjct: 364 NVLEPAEYRKMFD-RLSVFP-------------PSAHI--PTILLSLIWFDVIKSDVMVV 407
Query: 158 -TLACDSSFSGKHARNNLDSEHS-TDDTRSTNTTSTTIVSNNSSLINHKGDLISTEVSDT 215
S K + + S S + + + + S+++H + + D
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDL 464
Query: 216 VVTCGDKAFAE-----LQIKMMDTKQKL--KI-QDIQVENFKKNKHHTQLTLTEIKRLQP 267
+ D+ F L+ + L + D F + K I+
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQK---------IRHDST 512
Query: 268 TTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI 327
N S+ +N +++K Y+ I D + + + L L
Sbjct: 513 AWNASGSI-------------LNTLQQLKFYKPYICDNDPK------YERLVNAILDFLP 553
Query: 328 RLNTHC 333
++ +
Sbjct: 554 KIEENL 559
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 28.2 bits (63), Expect = 0.75
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 29 CEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDE 65
I + L + + + R I + E
Sbjct: 40 LRITDSSLQRMGVTDNRDREAIWREIVKQRLKTDIME 76
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 28.0 bits (62), Expect = 1.3
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
+++ F+ E + ++ L L + R KIL + +
Sbjct: 29 QYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.3
Identities = 30/169 (17%), Positives = 40/169 (23%), Gaps = 67/169 (39%)
Query: 109 NNSSLPYLTYKPNFHFVF-------------DIFPGICRTSNQNDGHKAGVLIQHP---L 152
+ S +P+ K F F I D K V +
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI-----NKDLVKNNVSFNAKDIQI 457
Query: 153 PLYPITLACDSSFSGKHARNNLDSEHSTDDTRS---------------TNTTSTTIV--- 194
P+Y +F G R S + T +T I+
Sbjct: 458 PVY-------DTFDGSDLR-----VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 195 -SNNSSLINHKGDLISTEVSDT---VVTCGDKAFAELQIKMMDT---KQ 236
S L G L T V+ G L I D KQ
Sbjct: 506 PGGASGL----GVLTHRNKDGTGVRVIVAGT-----LDINPDDDYGFKQ 545
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain
dimer, SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 28.4 bits (63), Expect = 1.4
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 29 CEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDE 65
I + L + + + R I + E
Sbjct: 60 LRITDSSLQRMGVTDNRDREAIWREIVKQRLKTDIME 96
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR
{Saccharomyces cerevisiae} PDB: 2ese_A
Length = 101
Score = 28.0 bits (62), Expect = 1.4
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 24 DLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
+ +E L +L R K+L A ++ +Y+ D + S+
Sbjct: 54 PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKERDLIDRSA 100
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 28.5 bits (63), Expect = 1.5
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 24 DLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
+ +E L +L R K+L A ++ +Y+ D + S+
Sbjct: 72 PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKERDLIDRSA 118
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 28.8 bits (65), Expect = 2.6
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 16/56 (28%)
Query: 255 TQLTLTEIKRLQPTTNTYESVGRMFIKTPH---PEVVVNLEKKVKSYEEKIKDIES 307
+ T KR ++ FI TP+ PEVV+ K Y+ K DI S
Sbjct: 165 AKNLKTLQKR-----DS-------FIGTPYWMAPEVVMCETMKDTPYDYKA-DIWS 207
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 27.2 bits (60), Expect = 2.7
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 24 DLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
+ +E L +L R K+L A ++ +Y+ D + S+
Sbjct: 41 PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKERDLIDRSA 87
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 28.9 bits (65), Expect = 2.7
Identities = 15/185 (8%), Positives = 39/185 (21%), Gaps = 19/185 (10%)
Query: 58 HEYESPDEDEESSLDEDDSSFSGKHARNNLDSEHST--DDTRSTNTTSTTIVSNNSSLPY 115
+YE +E E L E+ R+ + + T S + T+
Sbjct: 13 DDYELDEEPGEEELTEEQEE----EFRSAVATVRETLLGVPISEKEIADTVWYYY----- 63
Query: 116 LTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSFSGKHARNNLD 175
F + + + ++ K +
Sbjct: 64 --------FDVEKSVNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESS 115
Query: 176 SEHSTDDTRSTNTTSTTIVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTK 235
+ + + + + D + D + + K
Sbjct: 116 NGIKNLSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPK 175
Query: 236 QKLKI 240
+ +
Sbjct: 176 PVVHL 180
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 27.1 bits (60), Expect = 3.0
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
F ++ ++ + L L + + H+ IL V+ + S + E S
Sbjct: 30 LQDYPFEDWQL-PGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQTENSG 87
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 28.0 bits (61), Expect = 5.4
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 33 EEDL-NYLKILNPEHRAKILAAVQVMHEYESP 63
++DL +LK+++ HR + + +
Sbjct: 197 KKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYD 228
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural
genomics, northeast structural genomics consortium
(NESG); NMR {Enterococcus faecalis}
Length = 96
Score = 26.4 bits (59), Expect = 5.5
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 218 TCGDKAFA---ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ 256
++ A E K + KQK + ++ F HH
Sbjct: 58 KFETRSEATKAEAAFKKLTRKQKEQY----LKTFHLEHHHHH 95
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 26.6 bits (58), Expect = 7.0
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 23 EDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSLDE 73
E+L E L +L E + + + + DE +DE
Sbjct: 73 EELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEVDGVDE 123
>2i2x_A MTAB, methyltransferase 1; TIM barrel and helix bundle (MTAB),
rossman fold and helix B (MTAC); HET: B13; 2.50A
{Methanosarcina barkeri}
Length = 461
Score = 27.7 bits (61), Expect = 7.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKI 319
P PE + EK +K YE D+ + PA+ +
Sbjct: 46 APRPEAGASKEKLIKEYERITTDVMERMVQVGFPAIIL 83
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 25.9 bits (57), Expect = 8.9
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 157 ITLACDSSFSGKHARNNLDSEHST---DDTRSTNTT---STTIVSNNSSLINHKGDLIS 209
++ + SG H R +D + +DT ST+ T +V + + GD+I
Sbjct: 36 LSFPSNKLVSGDHCRIVVDEKSGQVTLEDT-STSGTVINKLKVVKKQTCPLQT-GDVIY 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,825,923
Number of extensions: 277725
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 59
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.2 bits)