RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14557
(338 letters)
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 50.3 bits (120), Expect = 5e-09
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
+ F GY L + +D+ L I H+ KIL ++Q M +
Sbjct: 21 RYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTS 72
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 48.9 bits (116), Expect = 2e-08
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
E+ S +LNGYE L+ +IKE L L I +PE RA++L+A + + S
Sbjct: 26 EYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS 76
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 48.4 bits (115), Expect = 2e-08
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
+ F GY LE+ + ++DL + I H+ KIL++VQ M
Sbjct: 18 RYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT 65
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 46.1 bits (109), Expect = 1e-07
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
+++ F +G+ ++ I + L + I HR +IL +Q++
Sbjct: 22 QYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILS 69
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 60
Score = 41.9 bits (98), Expect = 3e-06
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+++ F+ E + ++ L L + R KIL +
Sbjct: 14 QYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSF 59
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 40.6 bits (95), Expect = 9e-06
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
+ F G + + + EDL LKI ++R I +Q +
Sbjct: 12 PNCIEYFTSQGLQSIYHLQNLTIEDLGALKI-PEQYRMTIWRGLQDL 57
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains
3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Length = 64
Score = 38.7 bits (90), Expect = 4e-05
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
EH F + + + +ED L + HR I A++ +
Sbjct: 20 EHRDRFEDHEI-EGAHLPALTKEDFVELGVTRVGHRENIERALRQL 64
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 37.7 bits (87), Expect = 1e-04
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60
++ F G+ + ++ ED+ + + H+ KIL ++QVM
Sbjct: 20 QYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQ 68
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug
{Drosophila melanogaster [TaxId: 7227]}
Length = 62
Score = 32.2 bits (73), Expect = 0.009
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
+++ +F YE+ I E+ L + + K+ + + E
Sbjct: 19 KYIELFKNMTYEE---MLLITEDFLQSVGVTKG-ASHKLALCIDKLKE 62
>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 63
Score = 29.5 bits (66), Expect = 0.077
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
H +F + D ++ + E + L KI V
Sbjct: 19 VHGDLFRKHEI-DGKALLRLNSEMMMKYMGLKLGPALKICNLVN 61
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 29.6 bits (66), Expect = 0.10
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
F ++ ++ + L L + + H+ IL V+ +
Sbjct: 23 LQDYPFEDWQL-PGKNLLQLCPQSLEALAVRSLGHQELILGGVEQL 67
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster
[TaxId: 7227]}
Length = 70
Score = 26.7 bits (59), Expect = 1.0
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
+++ F+ D ++ +KE+ L + KI+A V+
Sbjct: 25 DYVDDFIQQEI-DGQALLRLKEKHLVNAMGMKLGPALKIVAKVE 67
>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 25.8 bits (57), Expect = 2.9
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 248 FKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEV---VVNLE-----KKVKSYE 299
++ +TL + K L +Y R + K E VV E + +E
Sbjct: 17 YRTLVRGRAVTLGQFKELLTKKGSY----RYYFKKVSDEFDCGVVFEEVREDEAILPVFE 72
Query: 300 EKI 302
EKI
Sbjct: 73 EKI 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,169,606
Number of extensions: 52464
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 16
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)