BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14558
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZI8|A Chain A, Crystal Structure Of The Hsac Extradiol Dioxygenase From
           M. Tuberculosis In Complex With 3,4-Dihydroxy-9,10-
           Seconandrost-1,3,5(10)-Triene-9,17-Dione (Dhsa)
 pdb|2ZI8|B Chain B, Crystal Structure Of The Hsac Extradiol Dioxygenase From
           M. Tuberculosis In Complex With 3,4-Dihydroxy-9,10-
           Seconandrost-1,3,5(10)-Triene-9,17-Dione (Dhsa)
 pdb|2ZYQ|A Chain A, Crystal Structure Of The Hsac Extradiol Dioxygenase From
           M. Tuberculosis
 pdb|2ZYQ|B Chain B, Crystal Structure Of The Hsac Extradiol Dioxygenase From
           M. Tuberculosis
          Length = 300

 Score = 28.9 bits (63), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 15  AIAAELACNKYDIVCLQEVWKNDDFELIKSVVFE----ALPYAHYFYSGVMGSGVCILSR 70
           A AAELA  + D +        +  E+      E      PY H F +G  G G  +LS 
Sbjct: 91  ATAAELADRRVDEMIRFADPSGNCLEVFHGTALEHRRVVSPYGHRFVTGEQGMGHVVLST 150

Query: 71  YEITEVL 77
            +  E L
Sbjct: 151 RDDAEAL 157


>pdb|3O4Z|A Chain A, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|B Chain B, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|C Chain C, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|D Chain D, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
          Length = 647

 Score = 28.9 bits (63), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 55  YFYSGVMGSGVCILSRYEITEVLFHQWQLNG 85
           Y+  G++ S VC+ + ++  E LF QW++N 
Sbjct: 437 YYAQGILSSIVCLNNEFD--EPLFEQWRINA 465


>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
 pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
           With The Trna(arg) And L-arg
 pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
           Complexed With The Trnaarg
          Length = 607

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 31  QEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKI 90
           QE W N DF L+K    + L      Y  V+ + +     +E T V+ + ++L   +   
Sbjct: 508 QEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI---KTHEPTTVVTYLFKLTHQVSSC 564

Query: 91  FHADWFGGKGVGLC-----------QVLVNGFRL 113
           +   W  G+   L            QVL NG RL
Sbjct: 565 YDVLWVAGQTEELATARLALYGAARQVLYNGMRL 598


>pdb|2G5G|X Chain X, Cofacial Heme Binding To Chan Of Campylobacter Jejuni
          Length = 268

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 32  EVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYI 87
           +VWK  D+E   +VVF       Y  S ++G+    LSR EIT +      L GY+
Sbjct: 116 KVWKWKDYEQFVNVVF-------YSKSKILGAN---LSRSEITSIYNGAQPLKGYV 161


>pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus
          Fulgidus
 pdb|2VOA|B Chain B, Structure Of An Ap Endonuclease From Archaeoglobus
          Fulgidus
          Length = 257

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 12 RIRAIAAELACNKYDIVCLQEVW-KNDDFELIKSVVFEALPYAHYFYSGVMG-SGVCILS 69
          R+  +   L  NK DI+C+QE   +N  F       F  + Y H  +SG  G +GV I S
Sbjct: 15 RLHIVIPWLKENKPDILCMQETKVENRKF---PEADFHRIGY-HVVFSGSKGRNGVAIAS 70

Query: 70 RYEITEVLF 78
            E  +V F
Sbjct: 71 LEEPEDVSF 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.143    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,458,768
Number of Sequences: 62578
Number of extensions: 180767
Number of successful extensions: 373
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 6
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)