BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14558
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VZS6|NSMA_DROME Putative neutral sphingomyelinase OS=Drosophila melanogaster
GN=CG12034 PE=1 SV=2
Length = 442
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 88/124 (70%)
Query: 1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV 60
GIP VS DR RI AI ELA KYDIV LQEVW +D EL++ LP++HYF+SGV
Sbjct: 15 GIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQEDSELLQKGTEAVLPHSHYFHSGV 74
Query: 61 MGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHV 120
MG+G+ +LS+Y I LFH W +NGY H+I HADWFGGKGVGLC++LV G +++Y H+
Sbjct: 75 MGAGLLVLSKYPILGTLFHAWSVNGYFHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHL 134
Query: 121 SISW 124
+
Sbjct: 135 HAEY 138
>sp|Q9ET64|NSMA_RAT Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2
PE=1 SV=1
Length = 422
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 76/123 (61%)
Query: 2 IPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVM 61
IP +SK R R++ + L +D+ L+EVW DF+ +K + P AHYF SG++
Sbjct: 19 IPYLSKHRADRMKRLGDFLNLESFDLALLEEVWSEQDFQYLKQKLSLTYPDAHYFRSGII 78
Query: 62 GSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVS 121
GSG+C+ SR+ I E++ H + LNGY +K +H DWF GK VGL + ++G LN Y TH+
Sbjct: 79 GSGLCVFSRHPIQEIVQHVYTLNGYPYKFYHGDWFCGKAVGLLVLHLSGLVLNAYVTHLH 138
Query: 122 ISW 124
+
Sbjct: 139 AEY 141
>sp|O60906|NSMA_HUMAN Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1
SV=2
Length = 423
Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV 60
GIP +SK R R+R + L +D+ L+EVW DF+ ++ + P AH+F SG+
Sbjct: 18 GIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLRQKLSPTYPAAHHFRSGI 77
Query: 61 MGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHV 120
+GSG+C+ S++ I E+ H + LNGY + I H DWF GK VGL + ++G LN Y TH+
Sbjct: 78 IGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGLLVLHLSGMVLNAYVTHL 137
>sp|O45870|NSMA_CAEEL Putative neutral sphingomyelinase OS=Caenorhabditis elegans
GN=T27F6.6 PE=3 SV=2
Length = 434
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 3 PKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG 62
P S DR R+ I + YDIV LQE+W DF + V PY HYF+SG G
Sbjct: 54 PIGSTDRVHRLNKIGQYMIDELYDIVGLQELWSYYDFVRLSEQVSSVYPYFHYFHSGFTG 113
Query: 63 SGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNG-FRLNVYTTHVS 121
SGVC+ SR+ I L +++ LNG+ H I DWFGGK VGL ++ ++G R+N YTTH+
Sbjct: 114 SGVCVFSRHPIVSTLTNRYSLNGFAHHIHRGDWFGGKVVGLTEIEIDGDLRVNFYTTHLH 173
Query: 122 ISW 124
+
Sbjct: 174 AEY 176
>sp|O70572|NSMA_MOUSE Sphingomyelin phosphodiesterase 2 OS=Mus musculus GN=Smpd2 PE=1
SV=1
Length = 419
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%)
Query: 2 IPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVM 61
IP +SK R R++ + L +D+ L+EVW DF+ ++ + P AHYF SG++
Sbjct: 19 IPYLSKHRADRMKRLGDFLNLENFDLALLEEVWSEQDFQYLRQRLSLTYPDAHYFRSGMI 78
Query: 62 GSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVS 121
GSG+C+ S++ I E+ H + LNGY + H DWF GK VGL + ++G LN Y TH+
Sbjct: 79 GSGLCVFSKHPIQEIFQHVYSLNGYPYMFHHGDWFCGKSVGLLVLRLSGLVLNAYVTHLH 138
Query: 122 ISW 124
+
Sbjct: 139 AEY 141
>sp|O74369|CSS1_SCHPO Inositol phosphosphingolipids phospholipase C
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=css1 PE=1 SV=2
Length = 424
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV 60
G+ VSK R R++A+ +LA YDIV LQEVW DF+ I+++V L Y+ +F+S
Sbjct: 18 GLRFVSKYRTERLKAVGEKLAKCDYDIVLLQEVWSIYDFQEIRNLVSCNLVYSRFFHSAA 77
Query: 61 MGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVL-VNGFRLNVYTTH 119
MG+G+ + S++ I E +++ LNG + DW+ GKGV + +G ++++ TH
Sbjct: 78 MGAGLAMFSKFPIIESSMNKYPLNGRPQAFWRGDWYVGKGVATASLQHPSGRIISLFNTH 137
Query: 120 V 120
+
Sbjct: 138 L 138
>sp|P40015|ISC1_YEAST Inositol phosphosphingolipids phospholipase C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1
SV=1
Length = 477
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 1 GIPKVSKDRDIRIRAIAAELACNK---------------------YDIVCLQEVWKNDDF 39
G+ VSK R R+RAIA +LA + YD++ LQE+W +D+
Sbjct: 48 GLKYVSKHRKERLRAIADKLAGHSMLTPISDELLPNGGDSNENEDYDVIALQEIWCVEDW 107
Query: 40 ELIKSVVFEALPYAHYFYSGVM-GSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGG 98
+ + S PY F+SG++ G G+ ILS+ I +++ +NG +F DW+ G
Sbjct: 108 KYLASACASKYPYQRLFHSGILTGPGLAILSKVPIESTFLYRFPINGRPSAVFRGDWYVG 167
Query: 99 KGVGLCQVLVNGFR 112
K + + VL G R
Sbjct: 168 KSIAIT-VLNTGTR 180
>sp|Q9QZ06|TOLIP_MOUSE Toll-interacting protein OS=Mus musculus GN=Tollip PE=1 SV=1
Length = 274
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 15 AIAAELACNKYDIVCLQEVWKNDDFELIKSVV 46
A+A + CN+ D+ +Q+++ N D E+I+SV+
Sbjct: 222 AVAPQPRCNEEDLKAIQDMFPNMDREVIRSVL 253
>sp|A2RUW1|TOLIP_RAT Toll-interacting protein OS=Rattus norvegicus GN=Tollip PE=2 SV=1
Length = 274
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 15 AIAAELACNKYDIVCLQEVWKNDDFELIKSVV 46
A+A + CN+ D+ +Q+++ N D E+I+SV+
Sbjct: 222 AVAPQPRCNEEDLKAIQDMFPNMDREVIRSVL 253
>sp|A6Q3P0|TRPC_NITSB Indole-3-glycerol phosphate synthase OS=Nitratiruptor sp. (strain
SB155-2) GN=trpC PE=3 SV=1
Length = 262
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 38 DFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFH--ADW 95
DF + K + EAL Y F + + LSR E+ E+L + W L H AD
Sbjct: 120 DFIIDKYQLVEALVYGADFVLLIAKA----LSRKELKELLEYTWHLGMEALVEIHDKADL 175
Query: 96 FGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIPLCPD 132
G + +N L + +S+S +IPL P+
Sbjct: 176 IKAIFAGANIIGINHRNLETFEMDMSLSEKLIPLIPN 212
>sp|Q4A5P8|MNMG_MYCS5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Mycoplasma synoviae (strain 53) GN=mnmG PE=3 SV=1
Length = 609
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 13 IRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSG------VC 66
+RAI A++ KY + +++ KN + LI++ V+E F S V+ +G VC
Sbjct: 90 VRAIRAQIDKEKYSKLIREDLQKNSNITLIEAGVYEIKADKKVFKSVVLSTGEEIFAKVC 149
Query: 67 ILS 69
+L+
Sbjct: 150 VLT 152
>sp|P17627|PHL_LEPIR Sphingomyelinase C OS=Leptospira interrogans GN=sph PE=4 SV=1
Length = 556
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 12 RIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAH----------------Y 55
R + I + D++ E + D +++ V PY Y
Sbjct: 111 RAQRIVSSNYIQNQDVIVFDEAFDTDARKILLDGVRSEYPYQTDVIGRTKKGWDATLGLY 170
Query: 56 FYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNV 115
GV I+S++ I E + H ++ G AD F KG ++ NG + ++
Sbjct: 171 RTDAFTNGGVVIVSKWPIEEKIQHVFKEKG-----CGADVFSNKGFAYVRIDKNGRKFHI 225
Query: 116 YTTHV 120
THV
Sbjct: 226 IGTHV 230
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis
thaliana GN=CCR4-5 PE=2 SV=2
Length = 454
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFE-LIKSVVFEALPYAHYFYSG 59
+P+ + R I E++ I+CLQEV + DD + L+K+ F + H +G
Sbjct: 122 NVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGV---HKSRTG 178
Query: 60 VMGSGVCILSRYEITEVLFHQ 80
G I + + E+L HQ
Sbjct: 179 EASDGCAIFWKENLFELLDHQ 199
>sp|Q53872|VDH_STRCM Valine dehydrogenase OS=Streptomyces cinnamonensis GN=vdh PE=3 SV=1
Length = 358
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 84 NGYIHKIFHADWFGGKGVGLCQVLVNGFR 112
NG +H +FH+D G + V LCQ +G +
Sbjct: 6 NGVLHTLFHSDQGGHEQVVLCQDRASGLK 34
>sp|P59116|PHL2_LEPIN Sphingomyelinase C 2 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=sph2
PE=3 SV=1
Length = 623
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 57 YSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVY 116
YS V G GV ILS++ I E + + + +G ADWF KG ++ G + +V
Sbjct: 242 YSLVNG-GVVILSKWPIEEKIQYIFNDSG-----CGADWFANKGFVYVKINKEGKKFHVI 295
Query: 117 TTH 119
TH
Sbjct: 296 GTH 298
>sp|Q8SRF1|PSB4_ENCCU Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE1 PE=1 SV=1
Length = 197
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVM 61
+ R + I +I A KYD+ W D + I SV F A YA YF G++
Sbjct: 93 RRRQLDISSIVAGRGPEKYDL------WSVDKYGAISSVPFCASGYAAYFVYGIL 141
>sp|Q6KID6|MNMG_MYCMO tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC
11711) GN=mnmG PE=3 SV=1
Length = 611
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 13 IRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFE 48
+RAI A++ KY + L+ V + + +LI+ +VFE
Sbjct: 91 VRAIRAQIDKEKYSQIILKAVQETKNIDLIEDMVFE 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.143 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,968,781
Number of Sequences: 539616
Number of extensions: 2158521
Number of successful extensions: 5453
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5438
Number of HSP's gapped (non-prelim): 20
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)