Query psy14558
Match_columns 136
No_of_seqs 139 out of 1256
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 22:57:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i41_A Beta-hemolysin; beta to 99.7 1.7E-17 5.8E-22 124.4 11.5 112 8-125 49-176 (317)
2 1zwx_A SMCL, sphingomyelinase- 99.7 1.7E-17 5.8E-22 122.4 10.8 109 10-124 32-156 (301)
3 2ddr_A Sphingomyelin phosphodi 99.7 1E-16 3.5E-21 118.4 11.2 109 10-124 31-156 (306)
4 3teb_A Endonuclease/exonucleas 99.7 2.7E-15 9.1E-20 108.3 14.1 112 7-124 17-148 (266)
5 4gew_A 5'-tyrosyl-DNA phosphod 99.6 3.7E-15 1.3E-19 114.0 13.2 104 7-124 133-237 (362)
6 4fva_A 5'-tyrosyl-DNA phosphod 99.6 1E-14 3.4E-19 104.2 13.7 104 7-124 27-131 (256)
7 3l1w_A Uncharacterized protein 99.5 9.9E-14 3.4E-18 100.0 12.3 108 9-123 20-136 (257)
8 4gz1_A Tyrosyl-DNA phosphodies 99.5 7.3E-13 2.5E-17 94.3 14.3 104 7-124 23-127 (256)
9 1ako_A Exonuclease III; AP-end 99.5 8.5E-14 2.9E-18 100.5 8.7 105 7-124 9-114 (268)
10 3mpr_A Putative endonuclease/e 99.5 3.6E-13 1.2E-17 99.7 11.8 108 8-122 27-145 (298)
11 4f1h_A Tyrosyl-DNA phosphodies 99.5 9.5E-13 3.2E-17 92.6 13.0 101 7-123 17-120 (250)
12 3g6s_A Putative endonuclease/e 99.5 1E-13 3.4E-18 100.6 6.6 109 9-123 23-142 (267)
13 2jc4_A Exodeoxyribonuclease II 99.4 7.1E-12 2.4E-16 89.8 11.1 104 4-124 6-110 (256)
14 1vyb_A ORF2 contains A reverse 99.3 2E-11 6.8E-16 86.4 11.1 98 9-123 20-119 (238)
15 2jc5_A Exodeoxyribonuclease; h 99.3 9E-12 3.1E-16 89.4 8.0 101 8-124 11-114 (259)
16 4b8c_D Glucose-repressible alc 99.2 8.7E-13 3E-17 108.6 0.9 115 8-123 422-559 (727)
17 2j63_A AP-endonuclease; base e 99.2 8.8E-11 3E-15 92.5 10.3 108 14-123 169-300 (467)
18 2voa_A AF_EXO, XTHA, exodeoxyr 99.2 3.4E-11 1.2E-15 86.4 6.9 97 8-123 11-109 (257)
19 3ngq_A CCR4-NOT transcription 99.2 9.5E-11 3.2E-15 90.7 8.4 76 7-83 58-147 (398)
20 1hd7_A DNA-(apurinic or apyrim 99.1 3.2E-10 1.1E-14 84.6 7.8 90 16-122 80-174 (318)
21 1wdu_A TRAS1 ORF2P; four-layer 99.0 1.8E-09 6.2E-14 77.3 10.3 99 5-123 26-127 (245)
22 2o3h_A DNA-(apurinic or apyrim 99.0 3.4E-10 1.2E-14 82.6 6.4 97 9-122 39-141 (285)
23 1sr4_B CDT B, cytolethal diste 98.9 1.9E-09 6.6E-14 78.8 7.2 95 15-123 26-142 (261)
24 3g91_A MTH0212, exodeoxyribonu 98.9 3.1E-09 1.1E-13 76.8 7.8 103 5-123 10-115 (265)
25 2imq_X Salivary nitrophorin; f 98.9 3E-08 1E-12 73.2 11.2 95 20-123 32-139 (282)
26 2f1n_A CDT B, cytolethal diste 98.8 1.3E-08 4.4E-13 74.2 7.4 92 15-123 37-151 (262)
27 2a40_B Deoxyribonuclease-1; WA 98.8 1.2E-07 4E-12 68.6 11.9 105 13-123 22-138 (260)
28 1i9z_A Synaptojanin, phosphati 98.6 2.8E-07 9.6E-12 70.1 10.8 102 16-124 43-171 (347)
29 2ei9_A Non-LTR retrotransposon 98.5 1.7E-07 5.9E-12 67.5 7.0 88 4-123 13-100 (240)
30 2xsw_A 72 kDa inositol polypho 98.4 7.6E-07 2.6E-11 67.9 7.4 94 22-124 55-156 (357)
31 4a9c_A Phosphatidylinositol-3, 97.8 0.0002 6.7E-09 53.7 10.6 96 23-124 46-150 (316)
32 3mtc_A Type II inositol-1,4,5- 97.8 0.00015 5.3E-09 54.2 9.6 102 15-123 25-147 (313)
33 3tqr_A Phosphoribosylglycinami 60.2 11 0.00036 26.4 3.9 20 13-32 72-91 (215)
34 3o1l_A Formyltetrahydrofolate 49.4 15 0.00052 27.0 3.4 24 9-32 166-189 (302)
35 3da8_A Probable 5'-phosphoribo 47.5 23 0.00079 24.6 4.0 21 13-33 78-98 (215)
36 3p9x_A Phosphoribosylglycinami 44.6 26 0.0009 24.3 3.9 21 13-33 70-90 (211)
37 4ds3_A Phosphoribosylglycinami 44.1 19 0.00063 25.0 3.0 20 13-32 75-94 (209)
38 1meo_A Phosophoribosylglycinam 41.8 31 0.0011 23.8 3.9 19 14-32 69-87 (209)
39 3nrb_A Formyltetrahydrofolate 41.0 21 0.00071 26.0 3.0 32 1-32 137-173 (287)
40 3kcq_A Phosphoribosylglycinami 41.0 9.9 0.00034 26.5 1.2 20 14-33 72-91 (215)
41 3lou_A Formyltetrahydrofolate 40.6 22 0.00074 26.0 3.1 32 1-32 143-179 (292)
42 3n0v_A Formyltetrahydrofolate 40.5 22 0.00074 25.9 3.1 32 1-32 138-174 (286)
43 3av3_A Phosphoribosylglycinami 40.4 31 0.001 23.8 3.7 20 13-32 71-90 (212)
44 1hjr_A Holliday junction resol 40.0 19 0.00064 23.8 2.4 25 13-37 48-72 (158)
45 3obi_A Formyltetrahydrofolate 40.0 22 0.00076 25.8 3.1 32 1-32 138-174 (288)
46 4i8i_A Hypothetical protein; 5 38.9 18 0.00062 26.0 2.4 21 16-36 85-105 (271)
47 3auf_A Glycinamide ribonucleot 38.5 29 0.00098 24.3 3.4 20 13-32 90-109 (229)
48 2ywr_A Phosphoribosylglycinami 37.7 39 0.0013 23.3 3.9 20 13-32 69-88 (216)
49 2yxb_A Coenzyme B12-dependent 37.6 25 0.00085 23.0 2.8 25 12-36 57-81 (161)
50 4fkc_A XAA-Pro aminopeptidase; 36.8 42 0.0014 24.8 4.3 29 2-30 8-36 (377)
51 1ccw_A Protein (glutamate muta 34.6 22 0.00075 22.6 2.1 24 13-36 43-66 (137)
52 1jkx_A GART;, phosphoribosylgl 33.9 37 0.0013 23.4 3.3 21 13-33 68-88 (212)
53 2p10_A MLL9387 protein; putati 33.4 40 0.0014 24.6 3.5 37 10-46 211-247 (286)
54 4ep4_A Crossover junction endo 32.2 28 0.00096 23.2 2.3 23 14-36 53-75 (166)
55 3ivz_A Nitrilase; alpha-beta s 32.1 45 0.0015 23.2 3.6 29 7-35 14-45 (262)
56 2jrx_A UPF0352 protein YEJL; h 28.8 48 0.0016 19.5 2.6 19 2-20 1-19 (83)
57 3p8k_A Hydrolase, carbon-nitro 27.8 47 0.0016 23.5 3.1 29 7-35 33-64 (281)
58 2jr2_A UPF0352 protein CPS_261 27.6 48 0.0016 19.1 2.4 19 2-20 1-19 (76)
59 2jpq_A UPF0352 protein VP2129; 27.4 48 0.0016 19.5 2.4 19 2-20 1-19 (83)
60 2juw_A UPF0352 protein SO_2176 27.1 49 0.0017 19.3 2.4 19 2-20 1-19 (80)
61 3il0_A Aminopeptidase P; XAA-P 26.9 37 0.0013 20.7 2.1 27 6-32 1-27 (131)
62 2juz_A UPF0352 protein HI0840; 26.9 51 0.0017 19.2 2.5 19 2-20 1-19 (80)
63 2vhh_A CG3027-PA; hydrolase; 2 26.2 39 0.0013 25.6 2.5 27 9-35 94-123 (405)
64 3ezx_A MMCP 1, monomethylamine 25.5 39 0.0013 23.3 2.2 19 12-30 131-149 (215)
65 3out_A Glutamate racemase; str 23.6 1.1E+02 0.0037 21.8 4.3 31 1-31 43-76 (268)
66 1y80_A Predicted cobalamin bin 23.2 44 0.0015 22.6 2.1 23 13-35 128-150 (210)
67 2e11_A Hydrolase; dimethylarse 23.1 90 0.0031 21.6 3.8 29 7-35 16-46 (266)
68 1g5t_A COB(I)alamin adenosyltr 21.9 1.1E+02 0.0039 20.8 4.0 43 12-54 108-155 (196)
69 3hkx_A Amidase; alpha-beta-BET 21.3 59 0.002 23.0 2.6 28 8-35 34-64 (283)
70 3uhf_A Glutamate racemase; str 21.2 1.3E+02 0.0045 21.5 4.4 30 2-31 61-93 (274)
71 2z08_A Universal stress protei 20.8 77 0.0026 19.1 2.8 20 13-32 88-107 (137)
72 3fdx_A Putative filament prote 20.8 77 0.0026 19.1 2.8 21 13-33 95-115 (143)
73 1ic9_A TH10AOX; three stranded 20.3 31 0.0011 15.5 0.5 11 125-135 12-22 (29)
No 1
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.74 E-value=1.7e-17 Score=124.44 Aligned_cols=112 Identities=23% Similarity=0.251 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEc-cc---C------------CCccEEEEecC
Q psy14558 8 DRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFY-SG---V------------MGSGVCILSRY 71 (136)
Q Consensus 8 ~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~-~~---~------------~g~GvailSr~ 71 (136)
.+..|.+.++..+...+||||||||++.....+.+.+.|.+.|||.+... .+ + .+.|++||||+
T Consensus 49 ~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~ 128 (317)
T 3i41_A 49 GQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKY 128 (317)
T ss_dssp CHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESS
T ss_pred cHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccccCCccccCccCcccccccccccCCccEEEeCC
Confidence 46788888998988899999999999876444556667777799842111 11 1 11599999999
Q ss_pred ccceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCCC
Q psy14558 72 EITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWV 125 (136)
Q Consensus 72 pi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~~ 125 (136)
||.....+.|+... ..++...|+++.++++++|++|+|+||||.++..
T Consensus 129 Pi~~~~~~~~~~~~------~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~ 176 (317)
T 3i41_A 129 PIKEKIQHVFKSGC------GFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDS 176 (317)
T ss_dssp CEEEEEEEECSCCC------SSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCS
T ss_pred CCccceeEECCCCC------CcccccCcceEEEEEEECCEEEEEEEECCCCCCC
Confidence 99998877776431 2355667999999999999999999999998653
No 2
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.73 E-value=1.7e-17 Score=122.44 Aligned_cols=109 Identities=24% Similarity=0.290 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcc----cC------------CCccEEEEecCcc
Q psy14558 10 DIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYS----GV------------MGSGVCILSRYEI 73 (136)
Q Consensus 10 ~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~----~~------------~g~GvailSr~pi 73 (136)
..|.+.+++.+...+||||||||+......+.+.+.|.+.|||...+.. ++ ..+|+|||||+||
T Consensus 32 ~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi 111 (301)
T 1zwx_A 32 MHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPI 111 (301)
T ss_dssp HHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSCE
T ss_pred HHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccccccCCccccccccccccccccccCCCEEEEecCCc
Confidence 6788888888899999999999998654334455566777888432211 11 1279999999999
Q ss_pred ceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 74 TEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
.....+.++... ..+++.+|++++++++++|++++|+||||.++.
T Consensus 112 ~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~ 156 (301)
T 1zwx_A 112 VEKSQHIFQRGG------GADRLSNKGFAYVKIMKNGKPYHIIGTHTQADD 156 (301)
T ss_dssp EEEEEEECSCCC------GGGGGBCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred ccceEEEecCCC------CcccccCCCeEEEEEEECCEEEEEEEecCCCCC
Confidence 988777776421 123345689999999999999999999999864
No 3
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.70 E-value=1e-16 Score=118.36 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcc-----------------cCCCccEEEEecCc
Q psy14558 10 DIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYS-----------------GVMGSGVCILSRYE 72 (136)
Q Consensus 10 ~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~-----------------~~~g~GvailSr~p 72 (136)
..|.+.++..+...+||||||||+......+.+.+.|.+.|||...+.. ....+|++||||+|
T Consensus 31 ~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~p 110 (306)
T 2ddr_A 31 TERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWP 110 (306)
T ss_dssp HHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSC
T ss_pred HHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCC
Confidence 6678888888888999999999998654334455566667887421111 01237999999999
Q ss_pred cceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 73 ITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
|.....+.++... ..++...|++++++++++|++++|+|+||.++.
T Consensus 111 i~~~~~~~~~~~~------~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~ 156 (306)
T 2ddr_A 111 IAEKIQYVFAKGC------GPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAED 156 (306)
T ss_dssp EEEEEEEECSCCC----------CCCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cccccEEEcCCCC------CcchhcCCCeEEEEEEeCCEEEEEEEECCCCCC
Confidence 9987777665421 123345789999999999999999999999975
No 4
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.66 E-value=2.7e-15 Score=108.34 Aligned_cols=112 Identities=15% Similarity=0.240 Sum_probs=79.6
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCCc------------h-HHHHHHHHhcC--CceEEE---cccCC--CccEE
Q psy14558 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDD------------F-ELIKSVVFEAL--PYAHYF---YSGVM--GSGVC 66 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~------------~-~~l~~~l~~~~--~y~~~~---~~~~~--g~Gva 66 (136)
.+.+.+++.|++.|++.+||||||||+..... + ..+.+.|.+.. +|..+. ..+.. ++|+|
T Consensus 17 ~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~a 96 (266)
T 3teb_A 17 ENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVA 96 (266)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEE
T ss_pred cchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEE
Confidence 46688999999999999999999999975421 1 11345555433 564321 12222 27999
Q ss_pred EEecCccceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 67 ILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 67 ilSr~pi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
||||+|+.....+.++....+ ..+..|+++.++++++|++++|+|+||.+..
T Consensus 97 ilsr~~~~~~~~~~~~~~~~~------~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~ 148 (266)
T 3teb_A 97 VITRHKIKAEDEFYCTFAQSV------RTISARRIVSITINYEGQDIEFYSCHMNLPN 148 (266)
T ss_dssp EEESSCCSEEEEEECSSCCCT------TCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEECceecCceeEEeCCCCCC------CCcccceEEEEEEEeCCeEEEEEEecCCCcc
Confidence 999999998877776643211 1123588999999999999999999998853
No 5
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.64 E-value=3.7e-15 Score=113.96 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=74.2
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccC-CCccEEEEecCccceeeEeeeccCC
Q psy14558 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV-MGSGVCILSRYEITEVLFHQWQLNG 85 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~-~g~GvailSr~pi~~~~~~~~~~~~ 85 (136)
.+.+.|.++|+++|++.+||||||||+.... ...+.+.+ ..| .++..+. .++|+|||||.|+.......++...
T Consensus 133 ~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~-~~~l~~~~---~~y-~~~~~~~~~~~G~aIlsk~~i~~~~~~~~~~~~ 207 (362)
T 4gew_A 133 RSLLTRMKAVAHIVKNVNPDILFLQEVVDRD-LAPIDKLQ---SLY-KIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQN 207 (362)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECSTT-CHHHHGGG---GTE-EEEESSTTSSSEEEEEEETTEEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEcCChhH-hHHHHHhc---CCc-eEEeCCCCCCceEEEEEeccCccccccccCCCC
Confidence 5678899999999999999999999997654 33332221 234 3344433 3599999999988654433332211
Q ss_pred ccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 86 YIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 86 ~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
. ...+.++.+++.++|.+|+|+|+||.++.
T Consensus 208 ~---------~~~r~~l~~~i~~~g~~l~v~ntHL~s~~ 237 (362)
T 4gew_A 208 S---------GMYRTLQILEGSIGGLKVFLLNTHLESTR 237 (362)
T ss_dssp C---------SSCCEEEEEEEEETTEEEEEEEEECCCSG
T ss_pred C---------cccceEEEEEEEECCEEEEEEEecCCccc
Confidence 0 12478899999999999999999998854
No 6
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.63 E-value=1e-14 Score=104.23 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=73.1
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccC-CCccEEEEecCccceeeEeeeccCC
Q psy14558 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV-MGSGVCILSRYEITEVLFHQWQLNG 85 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~-~g~GvailSr~pi~~~~~~~~~~~~ 85 (136)
.+...|.+.|+++|++.+||||||||+.... .+.+ ....++..+...+. .++|++|++|.++.......++...
T Consensus 27 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~-~~~l----~~~~~~~~~~~~~~~~~~g~~il~~~~~~~~~~~~~~~~~ 101 (256)
T 4fva_A 27 RSLLTRMKAVAHIVKNVNPDILFLQEVVDRD-LAPI----DKLQSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQN 101 (256)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECSTT-CHHH----HGGGGTEEEEESSTTSSSEEEEEEETTCEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEecChhH-hHHH----HHhcCCceEeecCCCCCcceEEEEeecccceecccccCCC
Confidence 4578899999999999999999999998754 3223 23334433333333 3489999999877654433333221
Q ss_pred ccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 86 YIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 86 ~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
. ...+.++.+.++++|+++.|+|+||.++.
T Consensus 102 ~---------~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~ 131 (256)
T 4fva_A 102 S---------GMYRTLQILEGSIGGLKVFLLNTHLESTR 131 (256)
T ss_dssp C---------SSCCEEEEEEEEETTEEEEEEEEECCCSG
T ss_pred C---------cccceeEEEEEEeCCeEEEEEEecCCCCC
Confidence 1 12467888999999999999999998853
No 7
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.54 E-value=9.9e-14 Score=100.04 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEccc---CCCccEEEEec---CccceeeEeeec
Q psy14558 9 RDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSG---VMGSGVCILSR---YEITEVLFHQWQ 82 (136)
Q Consensus 9 ~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~---~~g~GvailSr---~pi~~~~~~~~~ 82 (136)
++.|.+.+++.|++.+||||||||+.... .+.+. +.++|..+.... ..++|+||+|| +|+.....+.++
T Consensus 20 w~~r~~~i~~~i~~~~~DIv~LQEv~~~~-~~~l~----~~l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~ 94 (257)
T 3l1w_A 20 WSFRKEAVCQLINFHDWSLCCIQEVRPNQ-VRDLK----AYTTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLS 94 (257)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEECHHH-HHHHH----HHSSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHH----hcCCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECc
Confidence 55889999999999999999999998542 22333 234664332211 24589999998 999987777665
Q ss_pred cCC-ccceeecCcccCCcceEEEEEEEC--CEEEEEEEecCCCC
Q psy14558 83 LNG-YIHKIFHADWFGGKGVGLCQVLVN--GFRLNVYTTHVSIS 123 (136)
Q Consensus 83 ~~~-~~~~~~~~~~~~~r~~~~~~v~~~--g~~i~v~~tHl~~~ 123 (136)
... .|.. ..+...+|.+++++++.. |+++.|+|+||.+.
T Consensus 95 ~~~~~~~~--~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~ 136 (257)
T 3l1w_A 95 ETPQQPSI--HPEAGCPRIALWGLFKETTQNTPFLVINVHLDHI 136 (257)
T ss_dssp SSTTSSCC--CTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSS
T ss_pred CCCCcccc--cccccccceeEEEEEEEcCCCCEEEEEEeCCCCC
Confidence 321 1110 012234689999999984 78999999999874
No 8
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.51 E-value=7.3e-13 Score=94.34 Aligned_cols=104 Identities=16% Similarity=0.048 Sum_probs=68.1
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccCCCccEEEEecCccceeeE-eeeccCC
Q psy14558 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLF-HQWQLNG 85 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~~g~GvailSr~pi~~~~~-~~~~~~~ 85 (136)
.+.+.|.+.|+++|++.+||||||||+.... . ..|.+..++..+...+..+.|.+++++.+...... ..+....
T Consensus 23 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~-~----~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (256)
T 4gz1_A 23 CNLPERARGVCSCLALYSPDVVFLQEVIPPY-C----AYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPN 97 (256)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECHHH-H----HHHHHHCTTEEEEESCSSSSEEEEEEETTTEEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEcCCHHH-H----HHHHhhccccceeeccccCCceEEEEEeccccceecccccCCc
Confidence 4578899999999999999999999997432 2 23333333323444444556666666655433222 2111111
Q ss_pred ccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 86 YIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 86 ~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
....+.++.+.+..+|++++|+|+||.+..
T Consensus 98 ---------~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~ 127 (256)
T 4gz1_A 98 ---------TKMMRNLLCVNVSLGGNEFCLMTSHLESTR 127 (256)
T ss_dssp ---------CSSCCEEEEEEEEETTEEEEEEECBCCCSG
T ss_pred ---------ccccceEEEEEEEeCCEEEEEEeecccccc
Confidence 113467888999999999999999998743
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.49 E-value=8.5e-14 Score=100.50 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=71.1
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccCCC-ccEEEEecCccceeeEeeeccCC
Q psy14558 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG-SGVCILSRYEITEVLFHQWQLNG 85 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~~g-~GvailSr~pi~~~~~~~~~~~~ 85 (136)
...+.+.+.+++.|++.+||||||||+...... .....+. ..+|..++. +..+ .|+|||||+|+..... .++...
T Consensus 9 ~~~~~~~~~i~~~i~~~~~Dii~LQE~~~~~~~-~~~~~l~-~~gy~~~~~-~~~~~~G~ailsr~~~~~~~~-~~~~~~ 84 (268)
T 1ako_A 9 NGLRARPHQLEAIVEKHQPDVIGLQETKVHDDM-FPLEEVA-KLGYNVFYH-GQKGHYGVALLTKETPIAVRR-GFPGDD 84 (268)
T ss_dssp SCGGGCHHHHHHHHHHHCCSEEEEECCCCCGGG-CCHHHHH-HTTCEEEEE-EETTEEEEEEEESSCCSEEEE-SSTTCC
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEEeccCChhh-CCHhHhc-cCCCcEEEe-CCCCcceEEEEEecCcceeee-CCCCcc
Confidence 334456788999999999999999999875321 1122232 235533332 2333 8999999999987532 232110
Q ss_pred ccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 86 YIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 86 ~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
....++++.+++++++++++|+|+|+.+..
T Consensus 85 ---------~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~ 114 (268)
T 1ako_A 85 ---------EEAQRRIIMAEIPSLLGNVTVINGYFPQGE 114 (268)
T ss_dssp ---------HHHHTTEEEEEEEETTEEEEEEEEECCCCC
T ss_pred ---------cccCCCEEEEEEEcCCCeEEEEEEEecCCC
Confidence 012378899999999999999999998754
No 10
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=3.6e-13 Score=99.66 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccC-----CCccEEEE---ecCccceeeEe
Q psy14558 8 DRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV-----MGSGVCIL---SRYEITEVLFH 79 (136)
Q Consensus 8 ~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~-----~g~Gvail---Sr~pi~~~~~~ 79 (136)
.+..|.+.|++.|++.+||||||||+.... .+.+.+.|. .|. ++..+. .|.++||| ||||+.....+
T Consensus 27 ~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~-~~~l~~~l~---~y~-~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~ 101 (298)
T 3mpr_A 27 GWGQRYPVIAQMVQYHDFDIFGTQECFLHQ-LKDMKEALP---GYD-YIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDF 101 (298)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESBCHHH-HHHHHHHST---TEE-EECCCTTTSSSSSCBCCEEEETTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHhCC---CCc-EEEEecCCCCCCCceeEEEEecCceEEEeccEE
Confidence 457888999999999999999999998532 233333331 243 332221 34669999 99999988777
Q ss_pred eeccCC-ccceeecCcccCCcceEEEEEEE--CCEEEEEEEecCCC
Q psy14558 80 QWQLNG-YIHKIFHADWFGGKGVGLCQVLV--NGFRLNVYTTHVSI 122 (136)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~r~~~~~~v~~--~g~~i~v~~tHl~~ 122 (136)
.++... .|.. ..+...+|.+++++++. +|+++.|+|+||.+
T Consensus 102 ~l~~~p~~~~~--~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~ 145 (298)
T 3mpr_A 102 WLSETPDVPSK--GWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDH 145 (298)
T ss_dssp ESSSSTTSSCC--CTTCSSCCEEEEEEEEETTTCCEEEEEEEECCS
T ss_pred EccCCCCccCc--ccccccCceeEEEEEEEcCCCCEEEEEEecCCC
Confidence 665321 1110 11112368889999984 68999999999986
No 11
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.48 E-value=9.5e-13 Score=92.58 Aligned_cols=101 Identities=21% Similarity=0.173 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccCCC-ccEEEE--ecCccceeeEeeecc
Q psy14558 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG-SGVCIL--SRYEITEVLFHQWQL 83 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~~g-~Gvail--Sr~pi~~~~~~~~~~ 83 (136)
.+.+.|.+.|+++|++.+||||||||+.... + ..+...+++..++..+..+ .|.+++ ||+|+.....+.++.
T Consensus 17 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~----~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (250)
T 4f1h_A 17 LNLADRARGLCSYLALYTPDVVFLQELIPAY----V-QYLKKRAVSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFPT 91 (250)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECHHH----H-HHHHHHCTTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH----H-HHHHHhccCceeecccccccCceeEEeeccccceecccccccC
Confidence 4578899999999999999999999997432 2 2333334443344333333 445554 667777665555443
Q ss_pred CCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 84 NGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 84 ~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
.. ..+.++.+.+.++|..+.|+|+|+.+.
T Consensus 92 ~~-----------~~~~~~~~~~~~~~~~~~v~~~hl~~~ 120 (250)
T 4f1h_A 92 TQ-----------MMRNLLIAQVTFSGQKLYLMTSHLESC 120 (250)
T ss_dssp CS-----------SCCEEEEEEEEETTEEEEEEECBCCCS
T ss_pred cc-----------ccceEEEEEEecCCcEEEEeccccccc
Confidence 22 236788888899999999999999874
No 12
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.45 E-value=1e-13 Score=100.63 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEccc-----CCCccEEEE---ecCccceeeEee
Q psy14558 9 RDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSG-----VMGSGVCIL---SRYEITEVLFHQ 80 (136)
Q Consensus 9 ~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~-----~~g~Gvail---Sr~pi~~~~~~~ 80 (136)
++.|.+.+++.|++.+||||||||+.... .+.+.+.| .+|. ++..+ ..+.+++|| ||+|+.....+.
T Consensus 23 ~~~r~~~i~~~i~~~~~DIv~LQEv~~~~-~~~l~~~l---~~y~-~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~ 97 (267)
T 3g6s_A 23 WQYRKDRVCQFIKDHELDIVGMQEVLHNQ-FQDLRAGL---PEYD-GIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFW 97 (267)
T ss_dssp GGGTHHHHHHHHHHTTCSEEEEESBCHHH-HHHHHHHC---TTEE-EECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHhc---cCCc-EEEecCCCCCcCCceeEEEEEccceEEEecccEe
Confidence 46788999999999999999999998542 23333333 2453 23211 134669999 999999887776
Q ss_pred eccCC-ccceeecCcccCCcceEEEEEEE--CCEEEEEEEecCCCC
Q psy14558 81 WQLNG-YIHKIFHADWFGGKGVGLCQVLV--NGFRLNVYTTHVSIS 123 (136)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~r~~~~~~v~~--~g~~i~v~~tHl~~~ 123 (136)
++... .|.. ...+...+|.+++++++. +|+.+.|+|+||.+.
T Consensus 98 l~~~~~~~~~-~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~ 142 (267)
T 3g6s_A 98 LAENPDSVGM-MGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHV 142 (267)
T ss_dssp SSSCTTSTTC-CCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSS
T ss_pred cCCCCCcccc-ccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCC
Confidence 65321 1110 011222468899999995 578999999999874
No 13
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.36 E-value=7.1e-12 Score=89.77 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=67.2
Q ss_pred ccccChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccCCC-ccEEEEecCccceeeEeeec
Q psy14558 4 KVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG-SGVCILSRYEITEVLFHQWQ 82 (136)
Q Consensus 4 ~~s~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~~g-~GvailSr~pi~~~~~~~~~ 82 (136)
||-...+.+.+.+++.|++.+||||||||+...... .....+ ...+|.. +..+..+ .|+||+||+|+..... .++
T Consensus 6 ~Nv~~~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~-~~~~~~-~~~gy~~-~~~~~~~~~G~ailsr~~~~~~~~-~~~ 81 (256)
T 2jc4_A 6 WNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDK-FPAAAL-QMMGWHC-VWSGQKTYNGVAIVSRSVPQDVHF-GLP 81 (256)
T ss_dssp EECSCHHHHHHHHHHHHHSSCCSEEEEECCCSCGGG-SCHHHH-HTTTCEE-EEECCSSSCCEEEEESSCCEEEEE-SCT
T ss_pred EEcCCcHHHHHHHHHHHHhcCCCEEEEEeeccchhc-CCHhHH-hhcCCeE-EECCCCcceEEEEEECCChHHhee-cCC
Confidence 344556778899999999999999999999876421 112223 2356743 3333334 8999999999976433 233
Q ss_pred cCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 83 LNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
... .+ ..+.++.+++ + ++.|+|+|+.+..
T Consensus 82 ~~~-------~~--~~~~~~~~~~--~--~~~v~~~h~~~~~ 110 (256)
T 2jc4_A 82 ALP-------DD--PQRRVIAATV--S--GVRVINVYCVNGE 110 (256)
T ss_dssp TST-------TC--CSCCEEEEEE--T--TEEEEEEECCCCC
T ss_pred CCc-------cC--CcCcEEEEEe--C--CEEEEEEEecCCC
Confidence 210 00 1234555544 3 7999999997643
No 14
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.32 E-value=2e-11 Score=86.42 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHH-hcCCceEEEccc-CCCccEEEEecCccceeeEeeeccCCc
Q psy14558 9 RDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVF-EALPYAHYFYSG-VMGSGVCILSRYEITEVLFHQWQLNGY 86 (136)
Q Consensus 9 ~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~-~~~~y~~~~~~~-~~g~GvailSr~pi~~~~~~~~~~~~~ 86 (136)
...+.+.+++.|++.+||||||||+...... +. .+. .+|+|. +...+ ....|+||+||.++...... ....
T Consensus 20 ~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~--~~-~l~~~~y~~~-~~~~~~~~~~Gvail~r~~~~~~~~~-~~~~-- 92 (238)
T 1vyb_A 20 SAIKRHRLASWIKSQDPSVCCIQETHLTCRD--TH-RLKIKGWRKI-YQANGKQKKAGVAILVSDKTDFKPTK-IKRD-- 92 (238)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEECCCCCTTS--GG-GCCCTTCCEE-EEECCSSSSCCEEEEECTTCCCEEEE-EEEC--
T ss_pred chhhHHHHHHHHHHcCCCEEEEecccCCCCC--ch-hHhhCCCCeE-EEccCCCCCceEEEEEeCCCCccccc-eeEc--
Confidence 3456678999999999999999999754321 11 121 235542 22222 23479999999874321111 1110
Q ss_pred cceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 87 IHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 87 ~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
....++.+++++++.++.|+|+|+.+.
T Consensus 93 ----------~~~r~i~~~~~~~~~~~~v~~~y~p~~ 119 (238)
T 1vyb_A 93 ----------KEGHYIMVKGSIQQEELTILNIYAPNT 119 (238)
T ss_dssp ----------TTSSEEEEEEEETTEEEEEEEEECCSS
T ss_pred ----------CCCcEEEEEEEeCCCcEEEEEEecCCC
Confidence 013466788888999999999999763
No 15
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.29 E-value=9e-12 Score=89.37 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=60.7
Q ss_pred ChHHHHHH-HHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcc-cCCC-ccEEEEecCccceeeEeeeccC
Q psy14558 8 DRDIRIRA-IAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYS-GVMG-SGVCILSRYEITEVLFHQWQLN 84 (136)
Q Consensus 8 ~~~~r~~~-i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~-~~~g-~GvailSr~pi~~~~~~~~~~~ 84 (136)
..+.+.++ +++.|++.+||||||||+...... +...+....+|..++.. +..+ .|+|||||+|+..... .++..
T Consensus 11 ~~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~--~~~~l~~~~gy~~~~~~~~~~~~~G~ailsr~~~~~~~~-~~~~~ 87 (259)
T 2jc5_A 11 GIRSAYKKGFYEYIAASGADIVCVQELKAQEAD--LSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQI-GMGIE 87 (259)
T ss_dssp SHHHHHHTTHHHHHHHTTCSEEEEECCCCCGGG--CCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCSEEEE-SCSCH
T ss_pred cHHHHHHhHHHHHHHhcCCCEEEEEEecchhhc--cChhhccccCCeEEEeccCCCCcceEEEEEecCceeEEe-CCCCC
Confidence 33444554 999999999999999999875421 22233222344323322 3334 7999999999986543 12211
Q ss_pred CccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 85 GYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 85 ~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
. .+ ....++.+++ +++.|+|+|+.+..
T Consensus 88 ~-------~~--~~~r~~~~~~----~~~~v~~~h~~~~~ 114 (259)
T 2jc5_A 88 E-------FD--REGRFVRCDF----GRLSVISLYLPSGS 114 (259)
T ss_dssp H-------HH--TTCCEEEEEE----TTEEEEEEECCCCT
T ss_pred c-------cC--CCCeEEEEEc----CCEEEEEEeccCCC
Confidence 0 00 0122444443 47999999998754
No 16
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=8.7e-13 Score=108.63 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEc-----------ccCCCccEEEE---ecCcc
Q psy14558 8 DRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFY-----------SGVMGSGVCIL---SRYEI 73 (136)
Q Consensus 8 ~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~-----------~~~~g~Gvail---Sr~pi 73 (136)
.+..|...|++.|+..+|||||||||+.....+.+...+ ..++|.+++. .+..+.|+||| ||||+
T Consensus 422 ~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l-~~~gY~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l 500 (727)
T 4b8c_D 422 SWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLL-DKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKL 500 (727)
T ss_dssp SHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC--------CEEC----------------CCCCEEEC-------
T ss_pred hhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHH-HhCCccEEEeccCCcccccccCCCCcccEEEEEEcccceE
Confidence 578899999999999999999999998642111122223 2356654441 12235899999 99999
Q ss_pred ceeeEeeeccCCccc-eee-cCccc-----CCcceEEEEEEE--CCEEEEEEEecCCCC
Q psy14558 74 TEVLFHQWQLNGYIH-KIF-HADWF-----GGKGVGLCQVLV--NGFRLNVYTTHVSIS 123 (136)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~-~~~~~-----~~r~~~~~~v~~--~g~~i~v~~tHl~~~ 123 (136)
.+...+.|+...... .+. ..+.+ ..+.++++.++. .|+.++|+||||.+.
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l~V~ntHL~~~ 559 (727)
T 4b8c_D 501 ITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWAVTTHLHWD 559 (727)
T ss_dssp -----------------------------------------------------------
T ss_pred eeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceEEEEEeccccC
Confidence 988777664321100 000 00101 124566666654 478999999999873
No 17
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.20 E-value=8.8e-11 Score=92.52 Aligned_cols=108 Identities=19% Similarity=0.035 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCcEEEEeeecCCCchHHHH--HHHHhcCCceEEEcc--cCCC-ccEEEEecCccc-----eeeEeeecc
Q psy14558 14 RAIAAELACNKYDIVCLQEVWKNDDFELIK--SVVFEALPYAHYFYS--GVMG-SGVCILSRYEIT-----EVLFHQWQL 83 (136)
Q Consensus 14 ~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~--~~l~~~~~y~~~~~~--~~~g-~GvailSr~pi~-----~~~~~~~~~ 83 (136)
+.|+++|++.+||||||||+...... +. ..+....+|..++.. +..+ +|+|||||+|+. ......+..
T Consensus 169 ~~i~~~I~~~~pDIVcLQEtk~~~~~--~~~~~~la~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~~~ 246 (467)
T 2j63_A 169 SALRAFMEAEKPDVLCLQETKLNVDE--ADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFAL 246 (467)
T ss_dssp THHHHHHHHHCCSEEEEECCCCCTTC--HHHHHTSSCCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESSCC
T ss_pred HHHHHHHHHcCCCEEEEEecccchhc--cchHHHHhhcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeecccc
Confidence 46999999999999999999864321 22 123323466433322 3345 799999999984 222222321
Q ss_pred CCcccee---e-----cCcccCCcceEEEEEEECC------EEEEEEEecCCCC
Q psy14558 84 NGYIHKI---F-----HADWFGGKGVGLCQVLVNG------FRLNVYTTHVSIS 123 (136)
Q Consensus 84 ~~~~~~~---~-----~~~~~~~r~~~~~~v~~~g------~~i~v~~tHl~~~ 123 (136)
.+.+... . ...+-....++.++++++| ..+.|+|+|+...
T Consensus 247 p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~ 300 (467)
T 2j63_A 247 PSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANS 300 (467)
T ss_dssp CCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEEECCCC
T ss_pred ccccccccccccccccccccCCCCcEEEEEEEeCCcccccCceEEEEEEECCCC
Confidence 1100000 0 0011112346777777666 7899999999764
No 18
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.19 E-value=3.4e-11 Score=86.42 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHH-HHHHhcCCceEEEcccCCC-ccEEEEecCccceeeEeeeccCC
Q psy14558 8 DRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIK-SVVFEALPYAHYFYSGVMG-SGVCILSRYEITEVLFHQWQLNG 85 (136)
Q Consensus 8 ~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~-~~l~~~~~y~~~~~~~~~g-~GvailSr~pi~~~~~~~~~~~~ 85 (136)
..+.+.+.+++.|++.+||||||||+...... +. ..+ ...+|.. +..+..+ .|+||+||+|+.... ..++...
T Consensus 11 g~~~~~~~i~~~i~~~~~Dii~lQE~~~~~~~--~~~~~~-~~~gy~~-~~~~~~~~~G~ailsr~~~~~~~-~~~~~~~ 85 (257)
T 2voa_A 11 SIRSRLHIVIPWLKENKPDILCMQETKVENRK--FPEADF-HRIGYHV-VFSGSKGRNGVAIASLEEPEDVS-FGLDSEP 85 (257)
T ss_dssp CGGGTHHHHHHHHHHHCCSEEEEECCCCCGGG--CCHHHH-HTTTCEE-EEEEETTEEEEEEEESSCCEEEE-ESCSSSS
T ss_pred ChHHHHHHHHHHHhhcCCCEEEEEEeecchhh--cCHHHh-hhCCCcE-EEcCCCCccEEEEEEccChHHhe-ecCCCCc
Confidence 33455678999999999999999999864321 11 122 2345643 3333445 799999999997542 2233210
Q ss_pred ccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 86 YIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 86 ~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
.+ ..| ++.+++ + ++.|+|+|+.+.
T Consensus 86 -------~~--~~r-~l~~~~--~--~~~v~~~h~p~~ 109 (257)
T 2voa_A 86 -------KD--EDR-LIRAKI--A--GIDVINTYVPQG 109 (257)
T ss_dssp -------CC--GGG-EEEEEE--T--TEEEEEEECCCC
T ss_pred -------cc--cCc-EEEEEE--C--CEEEEEEEeCCC
Confidence 01 123 555544 3 799999999653
No 19
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.16 E-value=9.5e-11 Score=90.67 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=56.0
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcc-c----------CCCccEEEE---ecCc
Q psy14558 7 KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYS-G----------VMGSGVCIL---SRYE 72 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~-~----------~~g~Gvail---Sr~p 72 (136)
..+..|.+.|+++|+..+||||||||+...+..+.+...|. .++|..++.. + ..+.|+||| +||+
T Consensus 58 ~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~-~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ 136 (398)
T 3ngq_A 58 LNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALK-ERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFT 136 (398)
T ss_dssp HSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHH-HTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEE
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHH-hCCceEEEecCCCccccccccccCcceeEEEEECCcce
Confidence 46788999999999999999999999986431233444554 4678655432 2 135899999 7799
Q ss_pred cceeeEeeecc
Q psy14558 73 ITEVLFHQWQL 83 (136)
Q Consensus 73 i~~~~~~~~~~ 83 (136)
+++...+.|+.
T Consensus 137 ll~~~~i~ls~ 147 (398)
T 3ngq_A 137 LVQKHTVEFNQ 147 (398)
T ss_dssp EEEEEEEEHHH
T ss_pred EEeeeEEecCC
Confidence 99888887753
No 20
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.08 E-value=3.2e-10 Score=84.61 Aligned_cols=90 Identities=24% Similarity=0.229 Sum_probs=50.6
Q ss_pred HHHHHhcCCCcEEEEeeecCCCchHHHHHHHHh--cCCceEEEcc--cCCC-ccEEEEecCccceeeEeeeccCCcccee
Q psy14558 16 IAAELACNKYDIVCLQEVWKNDDFELIKSVVFE--ALPYAHYFYS--GVMG-SGVCILSRYEITEVLFHQWQLNGYIHKI 90 (136)
Q Consensus 16 i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~--~~~y~~~~~~--~~~g-~GvailSr~pi~~~~~~~~~~~~~~~~~ 90 (136)
++++|++.+||||||||+...... +...+.. +|+| .++.. ...| +|+|||||+|+..... .++...
T Consensus 80 i~~~i~~~~~DIi~LQE~~~~~~~--~~~~l~~~~gy~~-~~~~~~~~~~g~~Gvailsr~~~~~~~~-~~~~~~----- 150 (318)
T 1hd7_A 80 GLDWVKEEAPDILCLQETKCSENK--LPAELQELPGLSH-QYWSAPSDKEGYSGVGLLSRQCPLKVSY-GIGDEE----- 150 (318)
T ss_dssp HHHHHHHHCCSEEEEECCCCCC-------------CCCE-EEEECC-----CCCEEEEESSCCSEEEE-SCSCGG-----
T ss_pred HHHHHHhhCCCEEEEEEccCchhh--ccHHHHhcCCCce-EEEecCCCCCccceEEEEEcCCceeEEe-cCCCcc-----
Confidence 899999999999999999875421 2222322 3444 23222 1234 6999999999876432 222110
Q ss_pred ecCcccCCcceEEEEEEECCEEEEEEEecCCC
Q psy14558 91 FHADWFGGKGVGLCQVLVNGFRLNVYTTHVSI 122 (136)
Q Consensus 91 ~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~ 122 (136)
.+ ...| ++.+++ ..++|+|+|+.+
T Consensus 151 --~~-~~~r-~l~~~~----~~~~v~~vh~p~ 174 (318)
T 1hd7_A 151 --HD-QEGR-VIVAEF----DSFVLVTAYVPN 174 (318)
T ss_dssp --GS-SSSC-EEEEEC----SSCEEEEEECCC
T ss_pred --cC-CCCc-EEEEEc----CCEEEEEEEcCC
Confidence 00 0123 444433 579999999954
No 21
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.04 E-value=1.8e-09 Score=77.33 Aligned_cols=99 Identities=10% Similarity=0.060 Sum_probs=62.8
Q ss_pred cccChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEccc-CCC-ccEEEEecC-ccceeeEeee
Q psy14558 5 VSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSG-VMG-SGVCILSRY-EITEVLFHQW 81 (136)
Q Consensus 5 ~s~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~-~~g-~GvailSr~-pi~~~~~~~~ 81 (136)
|-...+.+.+.++++|++.+||||||||+...... .. ....+|..+.... ..+ .|+|||||- ++.- . .+
T Consensus 26 Nv~~~~~~~~~l~~~i~~~~~DIv~lQE~~~~~~~-~~----~~~~gy~~~~~~~~~~~~~GvaIl~~~~~~~~-~--~~ 97 (245)
T 1wdu_A 26 NLQRKKLATAELAIEAATRKAAIALIQEPYVGGAK-SM----KGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDV-I--QY 97 (245)
T ss_dssp ECTTCHHHHHHHHHHHHHHTCSEEEEESCCC-----------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEE-E--EC
T ss_pred eccccHHHHHHHHHHHhhcCCCEEEEEcccccCCc-cc----cCCCcceEeccccccCCCCCeEEEEECCCcce-E--Ee
Confidence 33445667888999999999999999999865321 11 1123563322221 122 799999953 4421 1 12
Q ss_pred ccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 82 QLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
+.. ..++.+++.++.+++.++|+|+|+.+.
T Consensus 98 ~~~------------~~~~~~~~~i~~~~~~~~v~~vy~p~~ 127 (245)
T 1wdu_A 98 PQL------------TTNNIVVVGIRTRAWEITLVSYYFEPD 127 (245)
T ss_dssp TTT------------CCSSEEEEEEECSSCEEEEEEEECCTT
T ss_pred ccc------------ccCCEEEEEEEcCCCcEEEEEEEeCCC
Confidence 211 135778888888889999999999874
No 22
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.04 E-value=3.4e-10 Score=82.63 Aligned_cols=97 Identities=23% Similarity=0.181 Sum_probs=55.9
Q ss_pred hHHHHHH-HHHHHhcCCCcEEEEeeecCCCchHHHHHHHH--hcCCceEEEcc--cCCC-ccEEEEecCccceeeEeeec
Q psy14558 9 RDIRIRA-IAAELACNKYDIVCLQEVWKNDDFELIKSVVF--EALPYAHYFYS--GVMG-SGVCILSRYEITEVLFHQWQ 82 (136)
Q Consensus 9 ~~~r~~~-i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~--~~~~y~~~~~~--~~~g-~GvailSr~pi~~~~~~~~~ 82 (136)
.+.+.++ ++++|++.+||||||||+...... +...+. .+|+|. ++.. ...| +|+|||||+|+.+... .++
T Consensus 39 ~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~--~~~~l~~~~gy~~~-~~~~~~~~~g~~Gvailsr~~~~~~~~-~~~ 114 (285)
T 2o3h_A 39 LRAWIKKKGLDWVKEEAPDILCLQETKCSENK--LPAELQELPGLSHQ-YWSAPSDKEGYSGVGLLSRQCPLKVSY-GIG 114 (285)
T ss_dssp HHHHHHTTHHHHHHHHCCSEEEEECCCCCTTS--CCGGGGGCGGGCEE-EEECBC--CCSCCEEEEESSCCSEEEE-SCS
T ss_pred ChhhhhhhHHHHHHhcCCCEEEEEEeecchhh--ccHHHHhccCCcEE-EEecccCCcccceEEEEEccChHHeee-ccC
Confidence 3334444 899999999999999999876421 111232 234442 2222 1234 6999999999776432 122
Q ss_pred cCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCC
Q psy14558 83 LNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSI 122 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~ 122 (136)
... .+ ...| ++.++ .+.+.|+|+|+.+
T Consensus 115 ~~~-------~~-~~~r-~l~~~----~~~~~v~~~h~p~ 141 (285)
T 2o3h_A 115 DEE-------HD-QEGR-VIVAE----FDSFVLVTAYVPN 141 (285)
T ss_dssp CGG-------GS-SBCC-EEEEE----CSSCEEEEEECCC
T ss_pred Ccc-------cC-CCCc-EEEEE----eCCEEEEEEEcCC
Confidence 110 00 0123 33333 3589999999955
No 23
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=98.94 E-value=1.9e-09 Score=78.84 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=57.9
Q ss_pred HHHHHHhc-CCCcEEEEeeecCCCchHHHHHHHHh-------cC----------CceEEEccc---CCC-ccEEEEecCc
Q psy14558 15 AIAAELAC-NKYDIVCLQEVWKNDDFELIKSVVFE-------AL----------PYAHYFYSG---VMG-SGVCILSRYE 72 (136)
Q Consensus 15 ~i~~~i~~-~~pDIi~LQEv~~~~~~~~l~~~l~~-------~~----------~y~~~~~~~---~~g-~GvailSr~p 72 (136)
.++.+|++ .+||||+|||++...........+.+ .+ .+.++++.. ..+ +|+||+||+|
T Consensus 26 ~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~ 105 (261)
T 1sr4_B 26 NVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQ 105 (261)
T ss_dssp HHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSC
T ss_pred HHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCceEEEEEeecCCCCccceEEEEccc
Confidence 79999999 88999999999885321000001100 01 121222111 123 7999999999
Q ss_pred cceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 73 ITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
+.+...+..+.++ ...|+++.+ +++| +.|+++|+.+.
T Consensus 106 ~~~v~~l~~~~~~----------~~~R~~l~i--~i~g--~~f~s~Hl~~~ 142 (261)
T 1sr4_B 106 ADEAFIVHSDSSV----------LQSRPAVGI--RIGT--DVFFTVHALAT 142 (261)
T ss_dssp CSEEEEECCCCCS----------SCCCCEEEE--EETT--EEEEEEECCTT
T ss_pred hhceEEcCCCCCC----------CcCcceEEE--EECC--eEEEEeCCCCC
Confidence 9765433322210 135888877 4666 99999999985
No 24
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.92 E-value=3.1e-09 Score=76.84 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=60.8
Q ss_pred cccChHHHHH-HHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEc-ccCCC-ccEEEEecCccceeeEeee
Q psy14558 5 VSKDRDIRIR-AIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFY-SGVMG-SGVCILSRYEITEVLFHQW 81 (136)
Q Consensus 5 ~s~~~~~r~~-~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~-~~~~g-~GvailSr~pi~~~~~~~~ 81 (136)
+-+..+.+.+ .+.++|++.+||||||||+...... +...+....+|..++. .+..+ .|+||+||.|+..... .+
T Consensus 10 Nv~g~~~~~~~~l~~~i~~~~~DIv~LQEt~~~~~~--~~~~~~~~~gy~~~~~~~~~~~~~Gvail~k~~~~~~~~-~~ 86 (265)
T 3g91_A 10 NVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQ--LPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLRE-GF 86 (265)
T ss_dssp ECSCHHHHHHHTHHHHHHHHCCSEEEEECCCSCGGG--SCHHHHCCTTCEEEEECBSSTTSCCEEEEESSCCSEEEC-CC
T ss_pred EcCCchhhhhhhHHHHHHhcCCCEEEEEeccccccc--cChhhhcccCCcEEEccCCCCCcCEEEEEEecChHHhcc-CC
Confidence 3344455555 4999999999999999999765422 2233432345643332 22344 7999999999876432 11
Q ss_pred ccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 82 QLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
+... .+ ....++.++ ...+.|+|+|+.+.
T Consensus 87 ~~~~-------~d--~~gr~i~~~----~~~~~i~~vy~p~~ 115 (265)
T 3g91_A 87 GVER-------FD--TEGRIQIAD----FDDFLLYNIYFPNG 115 (265)
T ss_dssp SCHH-------HH--SBSCEEEEE----CSSCEEEEEECCCC
T ss_pred CCcc-------cC--CcCCEEEEE----eCCEEEEEEEecCC
Confidence 1100 00 012344333 35799999999553
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.86 E-value=3e-08 Score=73.23 Aligned_cols=95 Identities=16% Similarity=0.047 Sum_probs=58.7
Q ss_pred HhcCCCcE--EEEeeecCCCc--------hHHHHHHHHhcCCceEEEc--ccCCCccEEEEecCcccee-eEeeeccCCc
Q psy14558 20 LACNKYDI--VCLQEVWKNDD--------FELIKSVVFEALPYAHYFY--SGVMGSGVCILSRYEITEV-LFHQWQLNGY 86 (136)
Q Consensus 20 i~~~~pDI--i~LQEv~~~~~--------~~~l~~~l~~~~~y~~~~~--~~~~g~GvailSr~pi~~~-~~~~~~~~~~ 86 (136)
+.+.+||| |||||+..... .+.+.+.|. .++|..+.. .+..|..+++++|.++... .....+ +.
T Consensus 32 ~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~~--~~ 108 (282)
T 2imq_X 32 NSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETII--VT 108 (282)
T ss_dssp TTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHH-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEEE--EE
T ss_pred cccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcC-CCceEEEEeccCceeEEEEEEEEccccCccceeeeec--cc
Confidence 34689996 59999986532 234444454 366743222 1223456777788876521 111111 10
Q ss_pred cceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 87 IHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 87 ~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
.....+|+++.+++.+.|..++|+|+||.+.
T Consensus 109 ------~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~ 139 (282)
T 2imq_X 109 ------VDDQKKSGGIVTSFTIYNKRFSFTTSRMSDE 139 (282)
T ss_dssp ------CSTTSCSEEEEEEEEETTEEEEEEEEECCTT
T ss_pred ------cccccCCceEEEEEEECCEEEEEEEECCCCC
Confidence 0112468999999999999999999999995
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=98.80 E-value=1.3e-08 Score=74.20 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=57.8
Q ss_pred HHHHHHhcCC-CcEEEEeeecCC------Cch------HHHHHHHHhcCC------ceEEEcccC---CC-ccEEEEecC
Q psy14558 15 AIAAELACNK-YDIVCLQEVWKN------DDF------ELIKSVVFEALP------YAHYFYSGV---MG-SGVCILSRY 71 (136)
Q Consensus 15 ~i~~~i~~~~-pDIi~LQEv~~~------~~~------~~l~~~l~~~~~------y~~~~~~~~---~g-~GvailSr~ 71 (136)
.+...|...+ +|||+|||++.. +.+ -.. .++...++ +.+++.... .+ +|+||+||+
T Consensus 37 ~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v-~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~ 115 (262)
T 2f1n_A 37 NVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV-RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNR 115 (262)
T ss_dssp HHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC-EEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESS
T ss_pred cHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCH-HHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEEEcc
Confidence 4666888877 999999999954 111 011 11222233 322232221 23 899999999
Q ss_pred ccceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 72 EITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 72 pi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
|+.+. +.+|... ..+|+++.+++ + .+.|+|+|+.+.
T Consensus 116 ~adev--~vLp~~~----------~~~Rp~lgiri--~--~~~ff~tHa~a~ 151 (262)
T 2f1n_A 116 RADEV--FVLSPVR----------QGGRPLLGIRI--G--NDAFFTAHAIAM 151 (262)
T ss_dssp CCSEE--EEECCSS----------TTCCCEEEEEE--T--TEEEEEEECCSS
T ss_pred cccce--EECCCCC----------CCCCceEEEEE--C--CEEEEEEEecCC
Confidence 99953 3344321 12588988777 2 499999999995
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=98.78 E-value=1.2e-07 Score=68.61 Aligned_cols=105 Identities=17% Similarity=0.103 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCcEEEEeeecCCCc--hHHHHHHHHh--cCCceEEEcc--cC--CCccEEEEecCcccee-eEeeecc
Q psy14558 13 IRAIAAELACNKYDIVCLQEVWKNDD--FELIKSVVFE--ALPYAHYFYS--GV--MGSGVCILSRYEITEV-LFHQWQL 83 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv~~~~~--~~~l~~~l~~--~~~y~~~~~~--~~--~g~GvailSr~pi~~~-~~~~~~~ 83 (136)
.+.|++.+. +|||||||||..... ...+.+.|.. ...|.++... +. .+.++++++|.+.... ....++.
T Consensus 22 ~~~i~~~~~--~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~~~~ 99 (260)
T 2a40_B 22 ASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDD 99 (260)
T ss_dssp HHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEECCT
T ss_pred HHHHHHHhc--cCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCceeccC
Confidence 444555553 799999999987532 3445555533 2346432221 11 2356899988664432 2333332
Q ss_pred CCccceeecCcccCCcceEEEEEEEC---CEEEEEEEecCCCC
Q psy14558 84 NGYIHKIFHADWFGGKGVGLCQVLVN---GFRLNVYTTHVSIS 123 (136)
Q Consensus 84 ~~~~~~~~~~~~~~~r~~~~~~v~~~---g~~i~v~~tHl~~~ 123 (136)
...+ . ..+.+ .|..+.+.+... |++++|+|+||.+.
T Consensus 100 ~~~~--~-~~~~~-~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~ 138 (260)
T 2a40_B 100 GCES--C-GNDSF-SREPAVVKFSSHSTKVKEFAIVALHSAPS 138 (260)
T ss_dssp TSTT--T-HHHHC-SSCCEEEEEECTTSSSSEEEEEECCCCGG
T ss_pred CCcC--C-CCCce-eeCCEEEEEEeCCCCCceEEEEEecCCCC
Confidence 2000 0 00111 367777888765 78999999999973
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.65 E-value=2.8e-07 Score=70.05 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=64.1
Q ss_pred HHHHHhc---CCCcE--EEEeeecCCCc-------------h-HHHHHHHHh----cCCceEEEcccC-CCccEEEEecC
Q psy14558 16 IAAELAC---NKYDI--VCLQEVWKNDD-------------F-ELIKSVVFE----ALPYAHYFYSGV-MGSGVCILSRY 71 (136)
Q Consensus 16 i~~~i~~---~~pDI--i~LQEv~~~~~-------------~-~~l~~~l~~----~~~y~~~~~~~~-~g~GvailSr~ 71 (136)
+.++|.. ..||| |||||+..... + +.+.+.|.. ..+|. ...+.. .|.+++|++|.
T Consensus 43 l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y~-~v~s~~l~g~~L~Vfvr~ 121 (347)
T 1i9z_A 43 LENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYV-QLRSGQLVGTALMIFCKE 121 (347)
T ss_dssp CHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEE-EEEEEEETTEEEEEEEEG
T ss_pred HHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCcee-EEEEeeccceEEEEEEeh
Confidence 6677774 68999 89999854211 1 223344542 35663 233322 36789999999
Q ss_pred ccceee-Eeeec--cCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 72 EITEVL-FHQWQ--LNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 72 pi~~~~-~~~~~--~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
++.... .+... ..+. +....+||++.+++.+.+..++|+|+||.+..
T Consensus 122 ~~~~~i~~v~~~~v~tG~------~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~ 171 (347)
T 1i9z_A 122 SCLPSIKNVEGTVKKTGL------GGVSGNKGAVAIRFDYEDTGLCFITSHLAAGY 171 (347)
T ss_dssp GGGGGEEEEEEEEEECCC------C----CCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred HhhhhccceeeeeEeccC------CCccCCCceEEEEEEECCeEEEEEEecCCCCC
Confidence 987532 22111 1111 11134699999999999999999999999843
No 29
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.55 E-value=1.7e-07 Score=67.49 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=57.6
Q ss_pred ccccChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccCCCccEEEEecCccceeeEeeecc
Q psy14558 4 KVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQL 83 (136)
Q Consensus 4 ~~s~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~~g~GvailSr~pi~~~~~~~~~~ 83 (136)
|+-+..+.+.+.+.++|++.+||||||||+... .+|. + .+....|+||+++.+....... +.
T Consensus 13 ~Nvn~~r~~~~~l~~~l~~~~~DIl~LQEt~~~-------------~gy~-~--~~~~~~gvail~~~~~~~~~~~--~~ 74 (240)
T 2ei9_A 13 INLGGAEDATRELPSIARDLGLDIVLVQEQYSM-------------VGFL-A--QCGAHPKAGVYIRNRVLPCAVL--HH 74 (240)
T ss_dssp EECTTCHHHHHTHHHHHHHHTCSEEEEESCCTT-------------SSSE-E--CCSSSCSEEEEESSTTSCEEEC--GG
T ss_pred EecCccHHHHHHHHHHHHHcCCCEEEeecceEc-------------CCce-E--eccCCCCEEEEEecCCcceeee--cc
Confidence 344566778888999999999999999999621 1453 2 2223589999999765433221 11
Q ss_pred CCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 84 NGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 84 ~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
. ..++...+++ .+..++|+|+|+.+.
T Consensus 75 ~------------~~~~~~~i~i--~~~~i~i~svY~P~~ 100 (240)
T 2ei9_A 75 L------------SSTHITVVHI--GGWDLYMVSAYFQYS 100 (240)
T ss_dssp G------------CCSSEEEEEE--TTTTEEEEEEECCTT
T ss_pred c------------CCCCEEEEEE--eeccEEEEEEEcCCC
Confidence 1 1134444444 446799999999663
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.40 E-value=7.6e-07 Score=67.92 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=58.3
Q ss_pred cCCCcE--EEEeeecCCC-ch-HHHHHHHHhcCCceEEEcccC-CCccEEEEecCccceee---EeeeccCCccceeecC
Q psy14558 22 CNKYDI--VCLQEVWKND-DF-ELIKSVVFEALPYAHYFYSGV-MGSGVCILSRYEITEVL---FHQWQLNGYIHKIFHA 93 (136)
Q Consensus 22 ~~~pDI--i~LQEv~~~~-~~-~~l~~~l~~~~~y~~~~~~~~-~g~GvailSr~pi~~~~---~~~~~~~~~~~~~~~~ 93 (136)
+..||| |+|||+.... .+ +.+.+.|. ..| ....+.. .|.+++||+|.++.... .......+. .
T Consensus 55 ~~~pDI~viGlQEi~~~~~~W~~~l~~~L~--~~Y-~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~------~ 125 (357)
T 2xsw_A 55 DYAQDLYVIGVQEGCSDRREWETRLQETLG--PHY-VLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRI------V 125 (357)
T ss_dssp CSCCSEEEEEEESCCSCHHHHHHHHHHHHC--TTE-EEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEE------E
T ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHHhC--Ccc-cchhhhhhhhEEEEEEEchHHhhcCceeEeccccccc------c
Confidence 357996 8899998752 12 22333332 234 2333333 35889999998875321 111111111 1
Q ss_pred cccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 94 DWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 94 ~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
..+.+||++.+++.+.+..++|+|+||.+..
T Consensus 126 g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~ 156 (357)
T 2xsw_A 126 SQIKTKGALGISFTFFGTSFLFITSHFTSGD 156 (357)
T ss_dssp ETTEEEEEEEEEEEETTEEEEEEEEECCCST
T ss_pred cccccccEEEEEEEECCeEEEEEEEccCCCC
Confidence 1234689999999999999999999999954
No 31
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=97.85 E-value=0.0002 Score=53.74 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCcEE--EEeeecCCC-ch-HHHHHHHHh--cCCceEEEcccCCCccEEEEecCccceee-Eeeec--cCCccceeecC
Q psy14558 23 NKYDIV--CLQEVWKND-DF-ELIKSVVFE--ALPYAHYFYSGVMGSGVCILSRYEITEVL-FHQWQ--LNGYIHKIFHA 93 (136)
Q Consensus 23 ~~pDIi--~LQEv~~~~-~~-~~l~~~l~~--~~~y~~~~~~~~~g~GvailSr~pi~~~~-~~~~~--~~~~~~~~~~~ 93 (136)
..|||+ +|||+.... .+ +.+.+.|.. ...|..+......|..++|+.|.++...- .+... ..+. .
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~------~ 119 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGI------A 119 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC--------
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeee------e
Confidence 347887 999997542 12 334444543 24564322222245789999998775421 11111 1111 1
Q ss_pred cccCCcceEEEEEEECCEEEEEEEecCCCCC
Q psy14558 94 DWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124 (136)
Q Consensus 94 ~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~ 124 (136)
....+||++.+++.+.+..++|+|+||.+..
T Consensus 120 g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~ 150 (316)
T 4a9c_A 120 NTLGNKGAVGVSFMFNGTSFGFVNCHLTSGN 150 (316)
T ss_dssp ----CEEEEEEEEEETTEEEEEEEEECCCST
T ss_pred EecCCCceEEEEEEECCcEEEEEEeccccCc
Confidence 1124699999999999999999999999843
No 32
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=97.81 E-value=0.00015 Score=54.22 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHhc--CCCc--EEEEeeecCCC------------ch-HHHHHHHHhcCCceEEEccc-CCCccEEEEecCcccee
Q psy14558 15 AIAAELAC--NKYD--IVCLQEVWKND------------DF-ELIKSVVFEALPYAHYFYSG-VMGSGVCILSRYEITEV 76 (136)
Q Consensus 15 ~i~~~i~~--~~pD--Ii~LQEv~~~~------------~~-~~l~~~l~~~~~y~~~~~~~-~~g~GvailSr~pi~~~ 76 (136)
.+.++|.. ..|| ||+|||+.... .+ +.+.+.|.....|. ...+. ..|--+.|+.|-.+...
T Consensus 25 ~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~-~v~s~~lvGl~l~Vfvr~~~~~~ 103 (313)
T 3mtc_A 25 CLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYA-KVKLIRLVGIMLLLYVKQEHAAY 103 (313)
T ss_dssp CTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEE-EEEEEEETTEEEEEEEEGGGGGG
T ss_pred hHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEE-EEEEechhhhhhhhhhhhhhhhh
Confidence 35667765 6799 79999995321 01 11222232223453 22222 23455677878555321
Q ss_pred -eEe--eeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCC
Q psy14558 77 -LFH--QWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSIS 123 (136)
Q Consensus 77 -~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~ 123 (136)
..+ ..-..+. .....+||++.+++.+.+..++|+|+||.+.
T Consensus 104 i~~v~~~~v~tG~------~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~ 147 (313)
T 3mtc_A 104 ISEVEAETVGTGI------MGRMGNKGGVAIRFQFHNTSICVVNSHLAAH 147 (313)
T ss_dssp EEEEEEEEEECSG------GGTSTTSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred cceeEeeeecccc------cccccCCceEEEEEEECCcEEEEEeeccCCC
Confidence 111 1111221 1112479999999999999999999999984
No 33
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=60.25 E-value=11 Score=26.38 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCcEEEEee
Q psy14558 13 IRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQE 32 (136)
-+.+.+.|++.+||+|++=-
T Consensus 72 d~~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 72 ESTLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEcc
Confidence 45788999999999999754
No 34
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=49.39 E-value=15 Score=26.97 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEee
Q psy14558 9 RDIRIRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 9 ~~~r~~~i~~~i~~~~pDIi~LQE 32 (136)
+.+.-.++.+.|++.+||+|++=-
T Consensus 166 r~~~~~~~~~~l~~~~~DliVlag 189 (302)
T 3o1l_A 166 KEPAFAEVSRLVGHHQADVVVLAR 189 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHHHHHHHhCCCEEEHhH
Confidence 344446788999999999999754
No 35
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=47.49 E-value=23 Score=24.62 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCcEEEEeee
Q psy14558 13 IRAIAAELACNKYDIVCLQEV 33 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv 33 (136)
-+.+.+.|++.+||++++=-.
T Consensus 78 d~~~~~~l~~~~~Dlivlagy 98 (215)
T 3da8_A 78 DVAITAATAAHEPDLVVSAGF 98 (215)
T ss_dssp HHHHHHHHHTTCCSEEEEEEC
T ss_pred hHHHHHHHHhhCCCEEEEcCc
Confidence 457889999999999998543
No 36
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=44.63 E-value=26 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCcEEEEeee
Q psy14558 13 IRAIAAELACNKYDIVCLQEV 33 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv 33 (136)
-..+.+.|++.+||+|++=-.
T Consensus 70 d~~~~~~l~~~~~Dliv~agy 90 (211)
T 3p9x_A 70 EIEVVQQLKEKQIDFVVLAGY 90 (211)
T ss_dssp HHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEEeCc
Confidence 457889999999999997543
No 37
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=44.08 E-value=19 Score=24.99 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCcEEEEee
Q psy14558 13 IRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQE 32 (136)
-+.+.+.|++.+||+|++=-
T Consensus 75 d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 75 EDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 35788999999999999754
No 38
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=41.84 E-value=31 Score=23.78 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCcEEEEee
Q psy14558 14 RAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 14 ~~i~~~i~~~~pDIi~LQE 32 (136)
+.+.+.|++.+||+|++=-
T Consensus 69 ~~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 69 SAIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHhcCCCEEEEcc
Confidence 5688899999999998754
No 39
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=41.01 E-value=21 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=21.9
Q ss_pred CCCcccc-----ChHHHHHHHHHHHhcCCCcEEEEee
Q psy14558 1 GIPKVSK-----DRDIRIRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 1 ~~~~~s~-----~~~~r~~~i~~~i~~~~pDIi~LQE 32 (136)
|+|+..- ++.+.-..+.+.|++.+||+|++=-
T Consensus 137 gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlag 173 (287)
T 3nrb_A 137 DIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLAR 173 (287)
T ss_dssp TSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESS
T ss_pred CCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhh
Confidence 5666531 2233345788999999999999754
No 40
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=41.01 E-value=9.9 Score=26.53 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCCcEEEEeee
Q psy14558 14 RAIAAELACNKYDIVCLQEV 33 (136)
Q Consensus 14 ~~i~~~i~~~~pDIi~LQEv 33 (136)
+.+.+.|++.+||+|++=-.
T Consensus 72 ~~~~~~L~~~~~Dlivlagy 91 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGF 91 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 67889999999999997543
No 41
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=40.64 E-value=22 Score=25.99 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=22.2
Q ss_pred CCCccc-----cChHHHHHHHHHHHhcCCCcEEEEee
Q psy14558 1 GIPKVS-----KDRDIRIRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 1 ~~~~~s-----~~~~~r~~~i~~~i~~~~pDIi~LQE 32 (136)
|+|+.. .++.+.-..+.+.|++.+||+|++=-
T Consensus 143 gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~ 179 (292)
T 3lou_A 143 GLPFRHFPITADTKAQQEAQWLDVFETSGAELVILAR 179 (292)
T ss_dssp TCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESS
T ss_pred CCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecC
Confidence 566553 12333445788999999999999743
No 42
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=40.51 E-value=22 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=21.9
Q ss_pred CCCcccc-----ChHHHHHHHHHHHhcCCCcEEEEee
Q psy14558 1 GIPKVSK-----DRDIRIRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 1 ~~~~~s~-----~~~~r~~~i~~~i~~~~pDIi~LQE 32 (136)
|+|+..- ++.+.-..+.+.|++.+||+|++=-
T Consensus 138 gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~ 174 (286)
T 3n0v_A 138 KIPYYHFALDPKDKPGQERKVLQVIEETGAELVILAR 174 (286)
T ss_dssp TCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESS
T ss_pred CCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecc
Confidence 5665531 2333345788999999999999754
No 43
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=40.39 E-value=31 Score=23.78 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCcEEEEee
Q psy14558 13 IRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQE 32 (136)
-+.+.+.|++.+||+|++=-
T Consensus 71 ~~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 71 ESEILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEch
Confidence 34678899999999999743
No 44
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=40.03 E-value=19 Score=23.84 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCcEEEEeeecCCC
Q psy14558 13 IRAIAAELACNKYDIVCLQEVWKND 37 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv~~~~ 37 (136)
.+.+.++|.+++||.+++-|++-..
T Consensus 48 ~~~l~~~i~~~~Pd~vaiE~vf~~~ 72 (158)
T 1hjr_A 48 YAGVTEIITQFQPDYFAIEQVFMAK 72 (158)
T ss_dssp HHHHHHHHHHHCCSEEEEEECCCCC
T ss_pred HHHHHHHHHHcCCCEEEEeeccccc
Confidence 4456778888999999999998654
No 45
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=39.96 E-value=22 Score=25.83 Aligned_cols=32 Identities=31% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCCcccc-----ChHHHHHHHHHHHhcCCCcEEEEee
Q psy14558 1 GIPKVSK-----DRDIRIRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 1 ~~~~~s~-----~~~~r~~~i~~~i~~~~pDIi~LQE 32 (136)
|+|+..- ++.+.-..+.+.|++.+||+|++=-
T Consensus 138 gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlag 174 (288)
T 3obi_A 138 DIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLAR 174 (288)
T ss_dssp TCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESS
T ss_pred CCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhh
Confidence 5665531 2333345788999999999999754
No 46
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}
Probab=38.92 E-value=18 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.7
Q ss_pred HHHHHhcCCCcEEEEeeecCC
Q psy14558 16 IAAELACNKYDIVCLQEVWKN 36 (136)
Q Consensus 16 i~~~i~~~~pDIi~LQEv~~~ 36 (136)
+-+.|++.+.|+|+|||....
T Consensus 85 ~~~~L~~~~wD~VilQe~S~~ 105 (271)
T 4i8i_A 85 IEKALADEKWDYISVQQASPL 105 (271)
T ss_dssp HHHHHHHSCCSEEEECCCGGG
T ss_pred HHHHhhcCCCCEEEeCCCCCC
Confidence 456788899999999999754
No 47
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=38.48 E-value=29 Score=24.32 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCcEEEEee
Q psy14558 13 IRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQE 32 (136)
-+.+.+.|++.+||+|++=-
T Consensus 90 ~~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESS
T ss_pred cHHHHHHHHhcCCCEEEEcC
Confidence 35688899999999999754
No 48
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=37.68 E-value=39 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCcEEEEee
Q psy14558 13 IRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQE 32 (136)
-+.+.+.|++.+||++++=-
T Consensus 69 ~~~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 69 EERMALELKKKGVELVVLAG 88 (216)
T ss_dssp HHHHHHHHHHTTCCEEEESS
T ss_pred hHHHHHHHHhcCCCEEEEeC
Confidence 35688999999999999754
No 49
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=37.64 E-value=25 Score=23.04 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCcEEEEeeecCC
Q psy14558 12 RIRAIAAELACNKYDIVCLQEVWKN 36 (136)
Q Consensus 12 r~~~i~~~i~~~~pDIi~LQEv~~~ 36 (136)
-.+.+++.+.+.+||+|+|.=....
T Consensus 57 p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 57 TPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred CHHHHHHHHHhcCCCEEEEEeechh
Confidence 4567889999999999999765543
No 50
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus}
Probab=36.82 E-value=42 Score=24.83 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCccccChHHHHHHHHHHHhcCCCcEEEE
Q psy14558 2 IPKVSKDRDIRIRAIAAELACNKYDIVCL 30 (136)
Q Consensus 2 ~~~~s~~~~~r~~~i~~~i~~~~pDIi~L 30 (136)
+++.|.+.++|++++.+.+++.+.|.+++
T Consensus 8 ~~~~~~Ey~~Rl~rlr~~m~~~glDalli 36 (377)
T 4fkc_A 8 HHHGSMDYKRRIHKFQAHFGKKGFEGALV 36 (377)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 46778899999999999999999999987
No 51
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.63 E-value=22 Score=22.57 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCcEEEEeeecCC
Q psy14558 13 IRAIAAELACNKYDIVCLQEVWKN 36 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv~~~ 36 (136)
.+.+++.+.+.+||+|++.=....
T Consensus 43 ~e~~v~~a~~~~~d~v~lS~~~~~ 66 (137)
T 1ccw_A 43 QELFIKAAIETKADAILVSSLYGQ 66 (137)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSST
T ss_pred HHHHHHHHHhcCCCEEEEEecCcC
Confidence 567889999999999999877654
No 52
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=33.87 E-value=37 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCCcEEEEeee
Q psy14558 13 IRAIAAELACNKYDIVCLQEV 33 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv 33 (136)
-+.+.+.|++.+||+|++=-.
T Consensus 68 ~~~~~~~l~~~~~Dliv~agy 88 (212)
T 1jkx_A 68 DRELIHEIDMYAPDVVVLAGF 88 (212)
T ss_dssp HHHHHHHHGGGCCSEEEESSC
T ss_pred cHHHHHHHHhcCCCEEEEeCh
Confidence 356889999999999997543
No 53
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=33.42 E-value=40 Score=24.63 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHH
Q psy14558 10 DIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVV 46 (136)
Q Consensus 10 ~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l 46 (136)
.+..+.+++.+++.+|||++|+-.-+-..-++....+
T Consensus 211 ~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l 247 (286)
T 2p10_A 211 VSLINECIEAARTIRDDIIILSHGGPIANPEDARFIL 247 (286)
T ss_dssp HHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHH
Confidence 6688999999999999999999885544444444444
No 54
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=32.21 E-value=28 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCcEEEEeeecCC
Q psy14558 14 RAIAAELACNKYDIVCLQEVWKN 36 (136)
Q Consensus 14 ~~i~~~i~~~~pDIi~LQEv~~~ 36 (136)
+.+.++|.+++||.+++-+++-.
T Consensus 53 ~~l~~~i~~~~Pd~vaiE~~F~~ 75 (166)
T 4ep4_A 53 ARVLEVLHRFRPEAVAVEEQFFY 75 (166)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCS
T ss_pred HHHHHHHHHhCCCEEEEeehhhc
Confidence 45666778899999999999854
No 55
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=32.09 E-value=45 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=21.6
Q ss_pred cChHHHHHHHHHHH---hcCCCcEEEEeeecC
Q psy14558 7 KDRDIRIRAIAAEL---ACNKYDIVCLQEVWK 35 (136)
Q Consensus 7 ~~~~~r~~~i~~~i---~~~~pDIi~LQEv~~ 35 (136)
.+...+++.+.+.+ ++.++|+|+|-|+..
T Consensus 14 ~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~ 45 (262)
T 3ivz_A 14 LEPDKNYSKAEKLIKEASKQGAQLVVLPELFD 45 (262)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcc
Confidence 45666777766666 457899999999864
No 56
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=28.78 E-value=48 Score=19.46 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=14.9
Q ss_pred CCccccChHHHHHHHHHHH
Q psy14558 2 IPKVSKDRDIRIRAIAAEL 20 (136)
Q Consensus 2 ~~~~s~~~~~r~~~i~~~i 20 (136)
||..|++..++.+.|...+
T Consensus 1 Mpi~SKYsd~qvE~ll~el 19 (83)
T 2jrx_A 1 MPQISRYSDEQVEQLLAEL 19 (83)
T ss_dssp CCCTTCTTHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHH
Confidence 7899999998887765543
No 57
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=27.77 E-value=47 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=21.1
Q ss_pred cChHHHHHHHHHHHhc---CCCcEEEEeeecC
Q psy14558 7 KDRDIRIRAIAAELAC---NKYDIVCLQEVWK 35 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~---~~pDIi~LQEv~~ 35 (136)
.+...+++.+.+.+++ .++|+|+|-|+..
T Consensus 33 ~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l 64 (281)
T 3p8k_A 33 GDSSKNETQITQWFEKNMNAEVDVVVLPEMWN 64 (281)
T ss_dssp TCHHHHHHHHHHHHHHHCCTTCCEEECCSSTT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEcCCCcc
Confidence 4556666666666654 6899999999864
No 58
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=27.65 E-value=48 Score=19.13 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=14.8
Q ss_pred CCccccChHHHHHHHHHHH
Q psy14558 2 IPKVSKDRDIRIRAIAAEL 20 (136)
Q Consensus 2 ~~~~s~~~~~r~~~i~~~i 20 (136)
||..|++..++.+.|...+
T Consensus 1 Mpi~SKYsd~qvE~ll~el 19 (76)
T 2jr2_A 1 MPIVSKYSNERVEKIIQDL 19 (76)
T ss_dssp CCCSCCSCHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHH
Confidence 7899999988887765543
No 59
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=27.37 E-value=48 Score=19.45 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=14.6
Q ss_pred CCccccChHHHHHHHHHHH
Q psy14558 2 IPKVSKDRDIRIRAIAAEL 20 (136)
Q Consensus 2 ~~~~s~~~~~r~~~i~~~i 20 (136)
||..|++..++.+.|...+
T Consensus 1 Mpi~SKYsd~qvE~ll~el 19 (83)
T 2jpq_A 1 MPITSKYTDEQVEKILAEV 19 (83)
T ss_dssp CCSSCCSCHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHH
Confidence 7899999988877765533
No 60
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=27.07 E-value=49 Score=19.29 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=14.5
Q ss_pred CCccccChHHHHHHHHHHH
Q psy14558 2 IPKVSKDRDIRIRAIAAEL 20 (136)
Q Consensus 2 ~~~~s~~~~~r~~~i~~~i 20 (136)
||..|++..++.+.|...+
T Consensus 1 Mpi~SKYsd~qvE~ll~el 19 (80)
T 2juw_A 1 MAIQSKYSNTQVESLIAEI 19 (80)
T ss_dssp CCCCCSSCHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHH
Confidence 7899999988877765433
No 61
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Probab=26.88 E-value=37 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=21.6
Q ss_pred ccChHHHHHHHHHHHhcCCCcEEEEee
Q psy14558 6 SKDRDIRIRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 6 s~~~~~r~~~i~~~i~~~~pDIi~LQE 32 (136)
|.+...|++++.+.+++.+.|.+++--
T Consensus 1 ~~~~~~Rl~~lr~~m~~~~~da~li~~ 27 (131)
T 3il0_A 1 SNAMQRRLERFDAKLVQSGLDALLVTG 27 (131)
T ss_dssp -CCGGGHHHHHHHHHHHHTCSEEEECS
T ss_pred ChHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 345667999999999999999888744
No 62
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=26.85 E-value=51 Score=19.22 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=14.7
Q ss_pred CCccccChHHHHHHHHHHH
Q psy14558 2 IPKVSKDRDIRIRAIAAEL 20 (136)
Q Consensus 2 ~~~~s~~~~~r~~~i~~~i 20 (136)
||..|++..++.+.|...+
T Consensus 1 Mpi~SKYsd~qvE~ll~el 19 (80)
T 2juz_A 1 MAQHSKYSDAQLSAIVNDM 19 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHH
Confidence 7899999988877765543
No 63
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=26.18 E-value=39 Score=25.58 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHH---hcCCCcEEEEeeecC
Q psy14558 9 RDIRIRAIAAEL---ACNKYDIVCLQEVWK 35 (136)
Q Consensus 9 ~~~r~~~i~~~i---~~~~pDIi~LQEv~~ 35 (136)
...+++.+.+.+ .+.++|+|+|.|+..
T Consensus 94 ~~~nl~~~~~li~~A~~~gadLVVfPE~~l 123 (405)
T 2vhh_A 94 REAIWNKVKTMIKAAAEAGCNIVCTQEAWT 123 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEcCCccc
Confidence 344455555554 456899999999753
No 64
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=25.51 E-value=39 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q psy14558 12 RIRAIAAELACNKYDIVCL 30 (136)
Q Consensus 12 r~~~i~~~i~~~~pDIi~L 30 (136)
-.+.+++.+++.+||+|+|
T Consensus 131 p~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 131 LNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CHHHHHHHHHHTTTSCEEE
T ss_pred CHHHHHHHHHHcCCCEEEE
Confidence 3567889999999999999
No 65
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=23.64 E-value=1.1e+02 Score=21.76 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=24.1
Q ss_pred CCCccccCh---HHHHHHHHHHHhcCCCcEEEEe
Q psy14558 1 GIPKVSKDR---DIRIRAIAAELACNKYDIVCLQ 31 (136)
Q Consensus 1 ~~~~~s~~~---~~r~~~i~~~i~~~~pDIi~LQ 31 (136)
++||..+.+ .++...+++.+.+.++|.|++-
T Consensus 43 ~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIA 76 (268)
T 3out_A 43 RIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIA 76 (268)
T ss_dssp TCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 468888765 4566677888889999999874
No 66
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.16 E-value=44 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCcEEEEeeecC
Q psy14558 13 IRAIAAELACNKYDIVCLQEVWK 35 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv~~ 35 (136)
.+.+.+.+++.+||+|++-=...
T Consensus 128 ~~~l~~~~~~~~~d~v~lS~~~~ 150 (210)
T 1y80_A 128 PGKFVEAVKKYQPDIVGMSALLT 150 (210)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSG
T ss_pred HHHHHHHHHHcCCCEEEEecccc
Confidence 56788888999999999976543
No 67
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=23.06 E-value=90 Score=21.60 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHHhc--CCCcEEEEeeecC
Q psy14558 7 KDRDIRIRAIAAELAC--NKYDIVCLQEVWK 35 (136)
Q Consensus 7 ~~~~~r~~~i~~~i~~--~~pDIi~LQEv~~ 35 (136)
.+...+++.+.+.+++ .++|+|+|-|...
T Consensus 16 ~d~~~n~~~~~~~i~~a~~gadlvv~PE~~~ 46 (266)
T 2e11_A 16 HDPAGNRDYYGALLEPLAGQSDLVILPETFT 46 (266)
T ss_dssp TCHHHHHHHHHHHHGGGTTTCSEEECCTTTT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCEEECCCCcc
Confidence 3566777777777764 5799999999754
No 68
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=21.93 E-value=1.1e+02 Score=20.77 Aligned_cols=43 Identities=19% Similarity=-0.031 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCcEEEEeeecCC-----CchHHHHHHHHhcCCceE
Q psy14558 12 RIRAIAAELACNKYDIVCLQEVWKN-----DDFELIKSVVFEALPYAH 54 (136)
Q Consensus 12 r~~~i~~~i~~~~pDIi~LQEv~~~-----~~~~~l~~~l~~~~~y~~ 54 (136)
..+.+.+.+.+.++|+|+|=|+... -..+.+.+.+.+.++..+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~ 155 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQT 155 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCE
Confidence 3455566676778999999999653 122445555655555433
No 69
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=21.35 E-value=59 Score=23.00 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHh---cCCCcEEEEeeecC
Q psy14558 8 DRDIRIRAIAAELA---CNKYDIVCLQEVWK 35 (136)
Q Consensus 8 ~~~~r~~~i~~~i~---~~~pDIi~LQEv~~ 35 (136)
+...+++.+.+.++ +.++|+|+|-|..-
T Consensus 34 d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l 64 (283)
T 3hkx_A 34 DPQHNLDLIDDAAARASEQGAQLLLTPELFG 64 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTTGG
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCCcc
Confidence 55666666666555 46899999999754
No 70
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=21.22 E-value=1.3e+02 Score=21.51 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=23.6
Q ss_pred CCccccCh---HHHHHHHHHHHhcCCCcEEEEe
Q psy14558 2 IPKVSKDR---DIRIRAIAAELACNKYDIVCLQ 31 (136)
Q Consensus 2 ~~~~s~~~---~~r~~~i~~~i~~~~pDIi~LQ 31 (136)
+||..+.+ .++...+++.+.+.++|.|++-
T Consensus 61 ~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIA 93 (274)
T 3uhf_A 61 VPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIA 93 (274)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 68888765 4466677888989999999863
No 71
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=20.84 E-value=77 Score=19.06 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCcEEEEee
Q psy14558 13 IRAIAAELACNKYDIVCLQE 32 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQE 32 (136)
.+.|.+..++.++|+|++=-
T Consensus 88 ~~~I~~~a~~~~~dliV~G~ 107 (137)
T 2z08_A 88 AEAILQAARAEKADLIVMGT 107 (137)
T ss_dssp HHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 46788888889999999853
No 72
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=20.79 E-value=77 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCcEEEEeee
Q psy14558 13 IRAIAAELACNKYDIVCLQEV 33 (136)
Q Consensus 13 ~~~i~~~i~~~~pDIi~LQEv 33 (136)
.+.|.+..++.++|+|++=--
T Consensus 95 ~~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 95 KDKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEeCC
Confidence 467888888889999988543
No 73
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=20.32 E-value=31 Score=15.54 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q psy14558 125 VIIPLCPDTES 135 (136)
Q Consensus 125 ~~~~~~~~~~~ 135 (136)
.++|+|+...|
T Consensus 12 frgpgcptlkp 22 (29)
T 1ic9_A 12 FRGPGCPTLKP 22 (29)
T ss_dssp EECSCCCCCCT
T ss_pred ecCCCCCcccc
Confidence 46788886654
Done!