RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14558
(136 letters)
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A*
3k55_A
Length = 317
Score = 95.6 bits (237), Expect = 8e-25
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 22/135 (16%)
Query: 1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAH------ 54
+ + + R I D+V E + N + + S V + PY
Sbjct: 42 TVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRS 101
Query: 55 ----------YFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLC 104
Y + GV I+S+Y I E + H ++ D KG
Sbjct: 102 QSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGC------GFDNDSNKGFVYT 155
Query: 105 QVLVNGFRLNVYTTH 119
++ NG ++V TH
Sbjct: 156 KIEKNGKNVHVIGTH 170
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Length = 301
Score = 95.2 bits (236), Expect = 9e-25
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 6 SKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPY------------- 52
+ + R IA D+V L E + + + + E P+
Sbjct: 28 NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWD 87
Query: 53 ---AHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVN 109
+Y + GV ++S++ I E H +Q G AD KG +++ N
Sbjct: 88 KTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGG------GADRLSNKGFAYVKIMKN 141
Query: 110 GFRLNVYTTH 119
G ++ TH
Sbjct: 142 GKPYHIIGTH 151
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Length = 306
Score = 93.6 bits (232), Expect = 3e-24
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 23/133 (17%)
Query: 4 KVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPY----------- 52
+ + R I A D+V L EV+ N + + + + P
Sbjct: 25 YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGS 84
Query: 53 ------AHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQV 106
+Y S GV I+S++ I E + + + K D KG ++
Sbjct: 85 EWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFA------KGCGPDNLSNKGFVYTKI 138
Query: 107 LVNGFRLNVYTTH 119
N ++V TH
Sbjct: 139 KKNDRFVHVIGTH 151
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest
center for structural genomics; 2.99A {Leptotrichia
buccalis c-1013-b}
Length = 266
Score = 72.2 bits (177), Expect = 2e-16
Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 26/137 (18%)
Query: 5 VSKDRDIRIRAIAAELACNKYDIVCLQEVW------------KNDDFELIKSVVFEALPY 52
+ +++ +I +A +A +YD++ +QEV + +++ + +
Sbjct: 15 LEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTD 74
Query: 53 AHYFYS--------GVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLC 104
Y+ G GV +++R++I Y + +
Sbjct: 75 TDYYLHWSNSHIGFGKYNEGVAVITRHKIKAEDEF------YCTFAQSVRTISARRIVSI 128
Query: 105 QVLVNGFRLNVYTTHVS 121
+ G + Y+ H++
Sbjct: 129 TINYEGQDIEFYSCHMN 145
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein,
enterococcus faecalis V583, PSI-2, MCSG, structural
genomics; 1.60A {Enterococcus faecalis}
Length = 257
Score = 46.9 bits (111), Expect = 2e-07
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 10 DIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG----SGV 65
R A+ + + + + C+QEV N +L +A + G G+
Sbjct: 21 SFRKEAVCQLINFHDWSLCCIQEVRPNQVRDL------KAYTTFTCLSAEREGDGQGEGL 74
Query: 66 CILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKG----VGLCQVLVNGFRLNVYTTH 119
IL + + + + + G GL + V H
Sbjct: 75 AILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVH 132
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein;
structural genomics, PSI-2, protein structure
initiative; HET: MSE PEG; 1.90A {Bacteroides
thetaiotaomicron}
Length = 298
Score = 43.5 bits (102), Expect = 4e-06
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 14/119 (11%)
Query: 10 DIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSG-----VMGSG 64
R IA + + +DI QE + + ++ EALP Y G G
Sbjct: 29 GQRYPVIAQMVQYHDFDIFGTQECFLHQLKDM-----KEALPGYDYIGVGRDDGKDKGEH 83
Query: 65 VCILSRYEITEVLFHQW----QLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTH 119
I R + +++ + K + A G + GF + H
Sbjct: 84 SAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLH 142
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein;
alpha-beta protein, structural genomics, PSI-2; 2.50A
{Bacteroides vulgatus atcc 8482}
Length = 267
Score = 43.4 bits (102), Expect = 5e-06
Identities = 21/122 (17%), Positives = 30/122 (24%), Gaps = 19/122 (15%)
Query: 10 DIRIRAIAAELACNKYDIVCLQEVWKN--DDFELIKSVVFEALPYAHYFYSG-----VMG 62
R + + ++ DIV +QEV N D LP G G
Sbjct: 24 QYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLR-------AGLPEYDGIGVGRDDGKTAG 76
Query: 63 SGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLV-----NGFRLNVYT 117
+ R + EVL + V + G
Sbjct: 77 EYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVN 136
Query: 118 TH 119
TH
Sbjct: 137 TH 138
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia
coli} SCOP: d.151.1.1
Length = 268
Score = 41.4 bits (98), Expect = 2e-05
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 12 RIRAIAAELACNKYDIVCLQEVWK--NDDFELIKSVVFEALPYAHYFYSGVMG-SGVCIL 68
R + A + ++ D++ LQE K +D F L L Y + FY G G GV +L
Sbjct: 14 RPHQLEAIVEKHQPDVIGLQET-KVHDDMFPL---EEVAKLGY-NVFYHGQKGHYGVALL 68
Query: 69 SRYEITEV 76
++ V
Sbjct: 69 TKETPIAV 76
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease,
lyase; 1.7A {Archaeoglobus fulgidus}
Length = 257
Score = 38.2 bits (90), Expect = 3e-04
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 12 RIRAIAAELACNKYDIVCLQEVWK--NDDFELIKSVVFEALPYAHYFYSGVMGS--GVCI 67
R+ + L NK DI+C+QE K N F F + Y H +SG GV I
Sbjct: 15 RLHIVIPWLKENKPDILCMQET-KVENRKFPE---ADFHRIGY-HVVFSG-SKGRNGVAI 68
Query: 68 LSRYEITEV 76
S E +V
Sbjct: 69 ASLEEPEDV 77
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: BCN DIO GOL;
1.50A {Neisseria meningitidis}
Length = 259
Score = 38.3 bits (90), Expect = 3e-04
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 13 IRAIAAE-----LACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG-SGVC 66
IR+ + +A + DIVC+QE+ K + +L + + H+ + G SGV
Sbjct: 12 IRSAYKKGFYEYIAASGADIVCVQEL-KAQEADLSADMKNPHGMHGHWHCAEKRGYSGVA 70
Query: 67 ILSRYEITEV 76
+ S+ + V
Sbjct: 71 VYSKRKPDNV 80
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1
type, retrotransposition, retrotransposon, transferase;
1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Length = 238
Score = 37.2 bits (87), Expect = 6e-04
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 20 LACNKYDIVCLQEVWK--NDDFELIKSVVFEALPYAHYFYSGVMG-SGVCILSRYEITEV 76
+ + C+QE D +K + Y +G +GV IL +
Sbjct: 31 IKSQDPSVCCIQET-HLTCRDTHRLK---IKGW-RKIYQANGKQKKAGVAILVSDKTDFK 85
Query: 77 L 77
Sbjct: 86 P 86
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase,
DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A
{Neisseria meningitidis}
Length = 256
Score = 37.1 bits (87), Expect = 7e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 12 RIRAIAAELACNKYDIVCLQEVWK--NDDFELIKSVVFEALPYAHYFYSGVMGS--GVCI 67
R+ + LA N DI+ LQE+ K D F + + + H +SG + GV I
Sbjct: 14 RLPQVQNLLADNPPDILVLQEL-KLDQDKFPA---AALQMMGW-HCVWSG-QKTYNGVAI 67
Query: 68 LSRYEITEV 76
+SR +V
Sbjct: 68 VSRSVPQDV 76
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5'
exonuclease, AP endonuclease; HET: PG4; 1.23A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A*
3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Length = 265
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 13 IRAIAAE-----LACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG--SGV 65
+RA+ + K DI+CLQE+ K +L + + Y +F SGV
Sbjct: 14 LRAVHRKGFLKWFMEEKPDILCLQEI-KAAPEQLPRK-LRHVEGYRSFFTPAERKGYSGV 71
Query: 66 CILSRYEITEV 76
+ ++ + +
Sbjct: 72 AMYTKVPPSSL 82
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 34.7 bits (79), Expect = 0.005
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 15/70 (21%)
Query: 26 DIVCLQEVWKNDDFELIKSVVFEALP-YAHYF--------YSGVMGSGVCILSRYEITEV 76
D++CLQE K + E + + Y+ YSG + T
Sbjct: 181 DVLCLQET-KLNVDEADANATLGVVDGYSFVDHPCAFKRGYSGTR-----TYMKNSTTVK 234
Query: 77 LFHQWQLNGY 86
H G+
Sbjct: 235 GLHARCTRGF 244
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 33.8 bits (78), Expect = 0.009
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 13 IRAIAAE-----LACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG----S 63
+RA + + DI+CLQE K + + + + E +H ++S S
Sbjct: 72 LRAWIKKKGLDWVKEEAPDILCLQET-KCSE-NKLPAELQELPGLSHQYWSAPSDKEGYS 129
Query: 64 GVCILSRYEITEV 76
GV +LSR +V
Sbjct: 130 GVGLLSRQCPLKV 142
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A
{Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A*
2o3c_A
Length = 285
Score = 33.7 bits (78), Expect = 0.011
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 13 IRAIAAE-----LACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG----S 63
+RA + + DI+CLQE K + + + + E +H ++S S
Sbjct: 39 LRAWIKKKGLDWVKEEAPDILCLQET-KCSE-NKLPAELQELPGLSHQYWSAPSDKEGYS 96
Query: 64 GVCILSRYEITEV 76
GV +LSR +V
Sbjct: 97 GVGLLSRQCPLKV 109
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 30.6 bits (70), Expect = 0.13
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 29/88 (32%)
Query: 5 VSKDRDIRI---RAIAAELACNKYDIVCLQEVWKNDDFELIKS---VVFEAL-------- 50
S +R++ + R + L D + + L F AL
Sbjct: 23 ESAEREVSLTSGRLVLQGLRDAGID-AHPFDPAERPLSALKDEGFVRAFNALHGGYGENG 81
Query: 51 -----------PYAHYFYSGVMGSGVCI 67
Y SGV+GS + +
Sbjct: 82 QIQGALDFYGIRYTG---SGVLGSALGL 106
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase,
cell WALL, peptidoglycan synthesis, vancomycin, ADP
binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP:
c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 30.2 bits (69), Expect = 0.18
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 31/89 (34%)
Query: 5 VSKDRDIRI---RAIAAELACNKYDIVCLQEVWKNDDFELIKS----VVFEAL------- 50
S +R++ + A+ A L D + K D +KS VF AL
Sbjct: 12 TSAEREVSLNSGAAVLAGLREGGID-AYPVDP-KEVDVTQLKSMGFQKVFIALHGRGGED 69
Query: 51 ------------PYAHYFYSGVMGSGVCI 67
PY SGVM S + +
Sbjct: 70 GTLQGMLELMGLPYTG---SGVMASALSM 95
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 29.0 bits (66), Expect = 0.37
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 29/87 (33%)
Query: 6 SKDRDIRI---RAIAAELACNKYDIVCLQEVWKNDDFELIKS---VVFEAL--------- 50
S ++ + I + A L NKY+IV + + + D AL
Sbjct: 14 SSEKQVSIMTGNEMIANLDKNKYEIVPI-TLNEKMDLIEKAKDIDFALLALHGKYGEDGT 72
Query: 51 ----------PYAHYFYSGVMGSGVCI 67
PY+ S ++ SG+C+
Sbjct: 73 VQGTLESLGIPYSG---SNMLSSGICM 96
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3,
structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B*
2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Length = 260
Score = 28.2 bits (62), Expect = 0.81
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 6 SKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYA-----HYFYSGV 60
+K + + + + +YDIV +QEV ++ + ++ + L HY S
Sbjct: 14 TKMSNATLASYIVRI-VRRYDIVLIQEV-RDSHLVAVGKLL-DYLNQDDPNTYHYVVSEP 70
Query: 61 MGSG-----VCILSRYEITEVLFHQWQLNGYIHKIFHADWF 96
+G L R VL +G D F
Sbjct: 71 LGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGN--DSF 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 27.4 bits (61), Expect = 1.3
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 20 LACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVL 77
+ NK D + + ++ + + + P +S + G GV + E+L
Sbjct: 147 IGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQA-KITACELL 203
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 27.2 bits (60), Expect = 2.3
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 59 GVMGS-----GV-CILSRYEITEVLFHQWQLNGYIHKIFHADWFG 97
+M + G C S+ + ++L +W+ +G + +DWFG
Sbjct: 188 CIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGML----MSDWFG 228
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding
protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Length = 245
Score = 26.4 bits (57), Expect = 2.8
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 12 RIRAIAAELAC----NKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCI 67
R + AELA K I +QE + + F + G I
Sbjct: 29 RKKLATAELAIEAATRKAAIALIQEPYVGGAKSMKG---FRGVRVFQSTAQGDGTVKAAI 85
Query: 68 LSRYEITEVLFHQW 81
+V+ +
Sbjct: 86 AVFDHDLDVIQYPQ 99
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein,
unknown function; 1.80A {Homo sapiens} PDB: 2hww_A
2hwx_A
Length = 186
Score = 26.2 bits (57), Expect = 3.3
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 5 VSKDRDIRIRAIAAELAC 22
++ DR++R++A+ +
Sbjct: 156 LTDDRNLRVKALTRNVPV 173
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 25.3 bits (56), Expect = 7.2
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 12 RIRAIAAELACNKYDIVCLQEVW 34
I AA + ++ E++
Sbjct: 41 LIDDAAARASEQGAQLLLTPELF 63
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 25.3 bits (56), Expect = 7.9
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 12 RIRAIAAELACNKYDIVCLQEVW 34
+ + E + +V L E++
Sbjct: 22 KAEKLIKEASKQGAQLVVLPELF 44
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 25.2 bits (55), Expect = 8.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 12 RIRAIAAELACNKYDIVCLQEVW 34
+++ + A +IVC QE W
Sbjct: 100 KVKTMIKAAAEAGCNIVCTQEAW 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 9.9
Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 38/148 (25%)
Query: 17 AAELACNKYDIVCLQE---VW-----KNDDFELIKSVVFEALPY--AHYFYSGVMGSGVC 66
A + C Y + C + W N +++ + + L Y + S S
Sbjct: 167 ALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNI 223
Query: 67 ILSRYEITEVLFHQWQLNGYIH-----------KIFHADWFGGKGVGLCQVL-------V 108
L + I L + Y + K ++A F C++L V
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLS----CKILLTTRFKQV 277
Query: 109 NGFRLNVYTTHVSISWVIIPLCPDTESK 136
F TTH+S+ + L PD E K
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD-EVK 304
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.143 0.467
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,277,745
Number of extensions: 128464
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 35
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.7 bits)