RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14558
(136 letters)
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 51.9 bits (122), Expect = 2e-09
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 23/131 (17%)
Query: 6 SKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFY-------- 57
+ + R I A D+V L EV+ N + + + + P
Sbjct: 21 NWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEW 80
Query: 58 ---------SGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLV 108
S GV I+S++ I E + + + K D KG ++
Sbjct: 81 DKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVF------AKGCGPDNLSNKGFVYTKIKK 134
Query: 109 NGFRLNVYTTH 119
N ++V TH
Sbjct: 135 NDRFVHVIGTH 145
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 48.4 bits (113), Expect = 3e-08
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 22/135 (16%)
Query: 6 SKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFY-------- 57
+ + R IA D+V L E + + + + E P+
Sbjct: 22 NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWD 81
Query: 58 --------SGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVN 109
+ GV ++S++ I E H +Q G KG +++ N
Sbjct: 82 KTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGAD------RLSNKGFAYVKIMKN 135
Query: 110 GFRLNVYTTHVSISW 124
G ++ TH
Sbjct: 136 GKPYHIIGTHTQADD 150
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 43.3 bits (100), Expect = 2e-06
Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 21/97 (21%)
Query: 6 SKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG--- 62
+ I DI+ +QE + S V + Y+ +G
Sbjct: 18 VNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRS 77
Query: 63 ------------------SGVCILSRYEITEVLFHQW 81
+ I+SR + E
Sbjct: 78 RPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHS 114
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 42.7 bits (99), Expect = 3e-06
Identities = 10/97 (10%), Positives = 20/97 (20%), Gaps = 21/97 (21%)
Query: 6 SKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMG--- 62
+ + I N DI+ +QE + V + +
Sbjct: 18 TTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNS 77
Query: 63 ------------------SGVCILSRYEITEVLFHQW 81
+ ++S EV
Sbjct: 78 RPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSP 114
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 34.6 bits (77), Expect = 0.002
Identities = 20/132 (15%), Positives = 33/132 (25%), Gaps = 10/132 (7%)
Query: 1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDD---FELIKSVVFEALPYAHYFY 57
+ I + +YDIV +QEV + +L+ + + HY
Sbjct: 10 TFGETKMSNATLASYIVRIV--RRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVV 67
Query: 58 SGV-----MGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFR 112
S L R VL +G + V
Sbjct: 68 SEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKE 127
Query: 113 LNVYTTHVSISW 124
+ H + S
Sbjct: 128 FAIVALHSAPSD 139
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 33.2 bits (74), Expect = 0.007
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 12 RIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRY 71
R + A + ++ D++ LQE +DD + L Y +++ GV +L++
Sbjct: 14 RPHQLEAIVEKHQPDVIGLQETKVHDD--MFPLEEVAKLGYNVFYHGQKGHYGVALLTKE 71
Query: 72 EITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLN 114
V + + + + +
Sbjct: 72 TPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGE 114
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 32.8 bits (73), Expect = 0.009
Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 11 IRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSR 70
I+ +A+ + + C+QE + + + +GV IL
Sbjct: 20 IKRHRLASWIKSQDPSVCCIQETHLTC--RDTHRLKIKGWRKIYQANGKQKKAGVAILVS 77
Query: 71 YEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLC 104
+ + + + + L
Sbjct: 78 DKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILN 111
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1
retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 228
Score = 28.5 bits (62), Expect = 0.26
Identities = 8/65 (12%), Positives = 16/65 (24%)
Query: 12 RIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRY 71
+A E A K I +QE + + V +
Sbjct: 16 ATAELAIEAATRKAAIALIQEPYVGGAKSMKGFRGVRVFQSTAQGDGTVKAAIAVFDHDL 75
Query: 72 EITEV 76
++ +
Sbjct: 76 DVIQY 80
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 27.7 bits (60), Expect = 0.44
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 2/107 (1%)
Query: 20 LACNKYDIVCLQEVWKNDDF--ELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVL 77
+ DI+CLQE +++ ++ + + Y SGV +LSR +V
Sbjct: 41 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 100
Query: 78 FHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISW 124
+ F + V G L
Sbjct: 101 YGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDE 147
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit
7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 26.0 bits (57), Expect = 1.5
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 52 YAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHAD 94
YF +M SGV + + + FH GY+ KI
Sbjct: 122 ETQYFAELLMTSGVVLCEG--VKWLSFHSGYDFGYLIKILTNS 162
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 24.0 bits (52), Expect = 7.4
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 90 IFHADWFGGKGVGL-CQVLVNGFRLNVYTTHVSISWVI 126
IF + + F L++ ++ +WV
Sbjct: 252 IFTGVVEKVVPMKGWLNIFNPTFTLHLLEESIAEAWVT 289
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.143 0.467
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,783
Number of extensions: 25826
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 18
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.4 bits)