BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14559
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis
elegans GN=rsp-7 PE=3 SV=3
Length = 452
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 156/257 (60%), Gaps = 6/257 (2%)
Query: 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCV 69
K K++ VANI+ ATRD + +F YLGK++DL++YP +++ + ++KF DE+CV
Sbjct: 8 KVKILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCV 67
Query: 70 GISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQI-EG 128
++QHLTNTV ID A+V PY + IPDE+ +G+ +LP HVTN+I E
Sbjct: 68 EVAQHLTNTVVIDCAIVCLPYPNPVIPDEESFFNSGGST---TAGQRQLPPHVTNKIQES 124
Query: 129 VPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ 188
+ ++ T DP L Q GLP YPPLP D+ K+EEIRRT+ N+ + V E+++ F
Sbjct: 125 DDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFN 184
Query: 189 K-VGTVNYIRFCTRENDT-NKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
G V Y R + + YA VEFS QA V AL+ +G K + L++ HS +I K
Sbjct: 185 MYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIK 244
Query: 247 PEAKSNEAAQREIEEAM 263
P+AK++E A EIEEA+
Sbjct: 245 PQAKTDEQALGEIEEAI 261
>sp|Q05519|SRS11_HUMAN Serine/arginine-rich splicing factor 11 OS=Homo sapiens GN=SRSF11
PE=1 SV=1
Length = 484
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 89/143 (62%), Gaps = 6/143 (4%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVT----NQI 126
++QHLTNTVF+DRAL+V PY G IPDE +AL + A P T QI
Sbjct: 91 VAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLTQI 150
Query: 127 EGVPPNQVIS-THDPVLVQHGLP 148
VP + + T DP L GLP
Sbjct: 151 GAVPLAALGAPTLDPALAALGLP 173
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 15/75 (20%)
Query: 219 VIPALKLNGTNLKGKTL--------------QMFHSTQSIQKPEAKSNEAAQREIEEAMS 264
+ AL L G NL ++L ++ H + P KS+ ++ +EIEEAM
Sbjct: 166 ALAALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSS-KEIEEAMK 224
Query: 265 RVKEAQNMISAAIDP 279
RV+EAQ++ISAAI+P
Sbjct: 225 RVREAQSLISAAIEP 239
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 38 DPNIATLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 96
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 97 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 156
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIG 282
+E+EE M RV+EAQ+ ISAAI+P G
Sbjct: 157 KELEEVMKRVREAQSFISAAIEPESG 182
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINI-EESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 41 DPNITALGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 99
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 100 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIG 282
+E+EE M RV+EAQ+ ISAAI+P G
Sbjct: 160 KELEEVMKRVREAQSFISAAIEPESG 185
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINI-EESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 41 DPNITTLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 99
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 100 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIG 282
+E+EE M RV+EAQ+ ISAAI+P G
Sbjct: 160 KELEEVMKRVREAQSFISAAIEPESG 185
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
GV + T + + PP P++ + KK E +R++ N++ + Q+L F
Sbjct: 55 GVSTRPCMQTTHSKMTAGAYTEGPPQPLSAEEKK-EIDKRSVYVGNVDYGSTAQDLEAHF 113
Query: 188 QKVGTVNYIR-FCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKGKTLQMF 238
G++N I C + + K YA +EF+++ V A+ ++ T +G+T+++
Sbjct: 114 SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 166
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TRENDTNK-YALVEFSDQACVIPALK 224
R++ NI + ++L D F +VG+V R RE K Y E+ DQ + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 225 -LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
LNG G+ L++ ++ K E KS
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TRENDTNK-YALVEFSDQACVIPALK 224
R++ NI + ++L D F +VG+V R RE K Y E+ DQ + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 225 -LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
LNG G+ L++ ++ K E KS
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 155 ITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TRENDTNK-YALVE 212
+T ++ R++ NI + ++L D F +VG V R RE K Y E
Sbjct: 4 LTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 213 FSDQACVIPALK-LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ DQ + A++ LNG G+ L++ ++ K E KS
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 155 ITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TRENDTNK-YALVE 212
+T ++ R++ NI + ++L D F +VG V R RE K Y E
Sbjct: 4 LTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 213 FSDQACVIPALK-LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ DQ + A++ LNG G+ L++ ++ K E KS
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TRENDTNK-YALVEFSDQACVIPALK 224
R++ NI + ++L D F +VG V R RE K Y E+ DQ + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 225 -LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
LNG G+ L++ ++ K E KS
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 155 ITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TRENDTNK-YALVE 212
+T ++ R++ NI + ++L D F +VG V R RE K Y E
Sbjct: 4 LTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 213 FSDQACVIPALK-LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ DQ + A++ LNG G+ L++ ++ K E KS
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 151 PPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-Y 208
PP P++ + KK E +R++ N++ + Q+L F G++N I C + + K Y
Sbjct: 78 PPRPLSAEEKK-EIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGY 136
Query: 209 ALVEFSDQACVIPALKLNGTNLKGKTLQMF 238
A +EF+++ V A+ ++ T +G+T+++
Sbjct: 137 AYIEFAERNSVDAAVTMDETVFRGRTIKVL 166
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 149 QYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTN-- 206
Q P +T K+E +L +E +VS L D F +G+V+ IR C R+ TN
Sbjct: 20 QTAPTTTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVC-RDAITNTS 78
Query: 207 -KYALVEFSDQACVIPAL-KLNGTNLKGKTLQMFHS 240
YA V F D A+ +LN T +KGK ++ S
Sbjct: 79 LGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWS 114
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 151 PPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YA 209
P P + ++ E TL N+ +++ ++ +FFQ+VG V +R T E+ +++ +
Sbjct: 297 PKTPASNQSQGTESA--TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFG 354
Query: 210 LVEFSDQACVIPALKLNGTNLKGKTLQM 237
V+F+ AL+L+G +L G+ +++
Sbjct: 355 HVQFASSEEAKKALELHGCDLDGRPVRL 382
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 161 KIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQAC 218
++E R++ NI V+P+++ D F+ G + I N Y +EF A
Sbjct: 58 QLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAY 117
Query: 219 VIPALKLNGTNLKGKTL 235
AL+LNG LKGK +
Sbjct: 118 REKALQLNGGELKGKKI 134
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-YALVEFSDQACVIPALKLNGTNL 230
N++ SV+P+EL F G+VN + C + K +A +EFS+ + V AL LNG+ L
Sbjct: 61 NVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSML 120
Query: 231 KGKTLQ 236
+ L+
Sbjct: 121 HERPLK 126
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 148 PQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTN- 206
P+ P P +K TL A N+ ++ ++ +FF++ G V +RF T +D +
Sbjct: 285 PKTPSTPAAGGSK-------TLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSF 337
Query: 207 -KYALVEFSDQACVIPALKLNGTNLKGKTLQM 237
+ VEF+ AL+ +G L G+ +++
Sbjct: 338 RGFGHVEFASSEEAQKALEFHGRPLLGREIRL 369
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKL 225
+TL N+ +V +++ FFQ+ G V IRF T E+ + + VEF+ AL+L
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 226 NGTNLKGKTLQM 237
G +L G+ +++
Sbjct: 509 AGHDLMGRPVRL 520
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 156 TYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTN---KYALVE 212
T + + E + +L +++ SVS L D F +G V+ IR C R+ T YA V
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVC-RDAITKTSLGYAYVN 82
Query: 213 FSDQACVIPAL-KLNGTNLKGKTLQMFHS 240
F+D A+ KLN T +KGK ++ S
Sbjct: 83 FNDHDAAKTAIEKLNFTPIKGKLCRIMWS 111
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTN---KYALVEFS 214
+++ +E +L ++E SVS L D F +G+V+ IR C R+ T YA V F+
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVC-RDAITKTSLGYAYVNFN 87
Query: 215 DQACVIPAL-KLNGTNLKGKTLQMFHS 240
D A+ +LN T +KG+ ++ S
Sbjct: 88 DHEAGRKAIEQLNYTPIKGRLCRIMWS 114
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTN---KYALVEFSDQACVIPAL- 223
TL N+ E QEL D F++ G V + F ++ DT +A + F+D+ + A
Sbjct: 224 TLRVTNVSEMAEEQELRDMFERFGRVTRV-FLAKDRDTGLAKGFAFISFADREDAVKACN 282
Query: 224 KLNGTNLK 231
K++G K
Sbjct: 283 KMDGWGFK 290
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-YALVEFSDQA 217
+K+E R++ N++ + +EL F G+VN + C + K +A +EFSD+
Sbjct: 156 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKE 215
Query: 218 CVIPALKLNGTNLKGKTLQM 237
V +L L+ + +G+ +++
Sbjct: 216 SVRTSLALDESLFRGRQIKV 235
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTN---KYALVEFSDQACVIPAL- 223
TL N+ E QEL D F++ G V + F ++ DT +A + F+D++ + A
Sbjct: 218 TLRVTNVSEMAEEQELRDMFERFGRVTRV-FLAKDRDTGLAKGFAFISFADRSDAVKACA 276
Query: 224 KLNGTNLK 231
K++G +
Sbjct: 277 KMDGFGFR 284
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREND--TNKYALVEFSDQACVIPALK 224
RT+ + + + P++L DFF VG V +R + N + A VEF + V A+
Sbjct: 166 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 225
Query: 225 LNGTNLKG 232
L G L G
Sbjct: 226 LTGQRLLG 233
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 133 QVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGT 192
Q+ S D + +P++ + K+ + R V N++ S +EL F GT
Sbjct: 63 QMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVG-NVDYGASAEELEAHFHGCGT 121
Query: 193 VNYIRFCTRENDTN--KYALVEFSDQACVIPALKLNGTNLKGKTLQ 236
+N + + D + +A +EF + V AL +N T +G+ ++
Sbjct: 122 INRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIK 167
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-YALVEFSDQA 217
+K+E R++ N++ + +EL F G+VN + C + K +A +EFSD+
Sbjct: 155 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKE 214
Query: 218 CVIPALKLNGTNLKGKTLQM 237
V +L L+ + +G+ +++
Sbjct: 215 SVRTSLALDESLFRGRQIKV 234
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-YALVEFSDQA 217
+K+E R++ N++ + +EL F G+VN + C + + K +A +EFSD+
Sbjct: 161 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 220
Query: 218 CVIPALKLNGTNLKGKTLQM 237
V +L L+ + +G+ +++
Sbjct: 221 SVRTSLALDESLFRGRQIKV 240
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-YALVEFSDQA 217
+K+E R++ N++ + +EL F G+VN + C + + K +A +EFSD+
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 218 CVIPALKLNGTNLKGKTLQM 237
V +L L+ + +G+ +++
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 133 QVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGT 192
Q+ S D + +P++ + K+ + R V N++ S +EL F GT
Sbjct: 63 QMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVG-NVDYGASAEELEAHFHGCGT 121
Query: 193 VNYIRFCTRENDTN--KYALVEFSDQACVIPALKLNGTNLKGKTLQ 236
+N + + D + +A +EF + V AL +N T +G+ ++
Sbjct: 122 INRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIK 167
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-YALVEFSDQA 217
+K+E R++ N++ + +EL F G+VN + C + + K +A +EFSD+
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 218 CVIPALKLNGTNLKGKTLQM 237
V +L L+ + +G+ +++
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus
tropicalis GN=tut1 PE=2 SV=1
Length = 843
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACV 219
K+ ++ R++ N S ++L D FQK+ V I + D YA+VEF + +
Sbjct: 58 KRNQQQERSVYVSNFPRETSEEQLRDVFQKISPVRNI---VMDKDRGLYAIVEFESKDGM 114
Query: 220 IPALKLNGTNLKGKTLQMF-HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNM--ISAA 276
AL+ L GK L++ + Q+ + S Q EA+S KE N +
Sbjct: 115 CAALEEPQIKLSGKRLRVKPREKKEFQRKKGGSPRTLQPPDPEALS--KELLNCADVEQQ 172
Query: 277 IDPVIGILSKDKKKSH 292
I ++ + S +SH
Sbjct: 173 IKKLVSLCSPSHHESH 188
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREND--TNKYALVEFSDQACVIPALK 224
RT+ + + + P++L +FF VG V +R + N + A VEF D + V A+
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query: 225 LNGTNLKG 232
L G + G
Sbjct: 213 LTGQRVLG 220
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 153 LPITYDTKKIEEIRRTLVAINIEE-SVSPQELV--------------DFFQKVGTVNYIR 197
+PI + E+ R +A N+++ S P L F+ G + I+
Sbjct: 221 VPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ 280
Query: 198 FC--TRENDTNKYALVEFSDQACVIPAL-KLNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ + Y + FSD C AL +LNG L G+ +++ H T+ A S
Sbjct: 281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREND--TNKYALVEFSDQACVIPALK 224
RT+ + + + P++L +FF VG V +R + N + A VEF D + V A+
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query: 225 LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAA 255
L G + G + +Q +A+ N AA
Sbjct: 213 LTGQRVLGVPI-------IVQASQAEKNRAA 236
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 153 LPITYDTKKIEEIRRTLVAINIEE-SVSPQELV--------------DFFQKVGTVNYIR 197
+PI + E+ R +A N+++ S P L F+ G + I+
Sbjct: 221 VPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ 280
Query: 198 FC--TRENDTNKYALVEFSDQACVIPAL-KLNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ + Y + FSD C AL +LNG L G+ +++ H T+ A S
Sbjct: 281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIP 221
I +L ++ VS Q L + F +VG V+ IR C R+ +T + YA V + + A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVC-RDTNTRRSLSYAYVNYYNGADAER 66
Query: 222 AL-KLNGTNLKGKTLQMFHS 240
AL LN T ++GK ++ S
Sbjct: 67 ALDTLNNTPIRGKACRIMWS 86
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 161 KIEEIRRTLVAI---NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQ 216
K+E ++ + N++ ++ QE D F + G + + +ND + + V +++
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANH 311
Query: 217 ACVIPAL-KLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEE 261
C A+ +LN KGK L + + + ++ E Q ++E+
Sbjct: 312 ECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEK 357
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREND--TNKYALVEFSDQACVIPALK 224
RT+ + + + P++L +FF VG V +R + N + A VEF D + V A+
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query: 225 LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAA 255
L G + G + +Q +A+ N AA
Sbjct: 213 LTGQRVLGVPI-------IVQASQAEKNRAA 236
Score = 35.0 bits (79), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 153 LPITYDTKKIEEIRRTLVAINIEE-SVSPQELV--------------DFFQKVGTVNYIR 197
+PI + E+ R +A N+++ S P L F+ G + I+
Sbjct: 221 VPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ 280
Query: 198 FC--TRENDTNKYALVEFSDQACVIPAL-KLNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ + Y + FSD C AL +LNG L G+ +++ H T+ A S
Sbjct: 281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKC 68
+ ++ V V N+ ++T DQ+ F G V + I D + CYV+F +++
Sbjct: 98 IDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRI---TILSDKTTGHPKGCCYVEFVNKES 154
Query: 69 VGISQHLTNTVFIDRALVVTP 89
+ + L ++ F +R L +TP
Sbjct: 155 IINAMALNDSFFNERQLKITP 175
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKL 225
+TL A N+ ++ ++ +FF++ G V +R + ++ + K Y +EF+ AL++
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 226 NGTNLKGKTLQM 237
NG L G+ +++
Sbjct: 444 NGKLLLGRDVRL 455
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL 75
VA + PQ T ++++ +F G + LRL RDV R ++++ +E+ + +
Sbjct: 54 VARLNPQTTEEKLRDVFSKFGDIRRLRL---VRDVVTGFSKRYAFIEYKEERSLKRAWRD 110
Query: 76 TNTVFID 82
N + +D
Sbjct: 111 ANKLILD 117
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KL 225
RTL N+E+ ++ EL F+ G + I ++ N YA ++SD V+ A+ K+
Sbjct: 656 RTLFIGNLEKDITAGELRSHFEAFGEI--IEIDIKKQGLNAYAFCQYSDIVSVVKAMRKM 713
Query: 226 NGTNLKGKTLQM 237
+G +L +++
Sbjct: 714 DGEHLGSNRIKL 725
>sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=tif35 PE=3 SV=1
Length = 289
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL- 223
TL N+ E QEL D F++ G V + F R+ +T + +A + F+D++ A
Sbjct: 210 TLRVTNVSELAEEQELRDLFERFGRVTRV-FLARDRETQRAKGFAFISFADRSDAARACD 268
Query: 224 KLNGTNLK 231
K++G +
Sbjct: 269 KMDGFGYR 276
>sp|Q9TW45|PAR1_CAEEL Serine/threonine-protein kinase par-1 OS=Caenorhabditis elegans
GN=par-1 PE=1 SV=1
Length = 1192
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 151 PPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE-------- 202
P LPI K +R T ++ S++P +++ +KV N + RE
Sbjct: 1083 PSLPIHEGDVKPRSLRFTW-SMKTTSSLAPDDMMREIRKVLDANGCDYEQRERYMILCVH 1141
Query: 203 NDTNKYALVEFSDQACVIPALKLNGTNLK 231
D N +LV++ + C +P L LNG K
Sbjct: 1142 GDPNTDSLVQWEMEVCKLPRLSLNGVRFK 1170
>sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2
Length = 759
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN 226
TLV N+ SVS ++L + F G + IR + + VEF D ALK LN
Sbjct: 252 TLVVFNLAPSVSNRDLENIFGVYGEIKEIRETP---NKRHHKFVEFFDVRSADAALKALN 308
Query: 227 GTNLKGKTLQMFHS 240
T + GK +++ HS
Sbjct: 309 RTEIAGKRIKLEHS 322
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-YALVEFSDQA 217
+K+E R++ N++ S +EL F + G V+ + C + + K YA +EF+ +
Sbjct: 140 EKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKG 199
Query: 218 CVIPALKLNGTNLKGKTLQMF 238
V A++L+ + +G+ +++
Sbjct: 200 SVQAAVELDQSLFRGRVIKVL 220
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNG 227
L+ N+ S Q+L DF ++ G V Y + TN+ ++EF + + AL KL+G
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYA--DAHKERTNE-GVIEFRSYSDMKRALDKLDG 168
Query: 228 TNLKGKTLQM 237
T + G+ +++
Sbjct: 169 TEINGRNIRL 178
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNG 227
L+ N+ S Q+L DF ++ G V Y + TN+ ++EF + + AL KL+G
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYA--DAHKERTNE-GVIEFRSYSDMKRALDKLDG 168
Query: 228 TNLKGKTLQM 237
T + G+ +++
Sbjct: 169 TEINGRNIRL 178
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 154 PITYD-----TKKIEEIRR-----TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREN 203
PIT D ++ E R+ +L NI+ES+ + + F K GT+ I+ EN
Sbjct: 447 PITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDEN 506
Query: 204 DTNK-YALVEFSDQACVIPAL-KLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEE 261
NK + + FS+ AL LNG K +Q+ S + + K N +
Sbjct: 507 ARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNGNS------ 560
Query: 262 AMSRVKEAQNMI--SAAIDPVIGILSKDKKKSHSPVRHL 298
K +N+I A+ G L ++ + H P +H+
Sbjct: 561 ----TKITKNIIQGGASASQYTGYLPINRYQQHLPHQHI 595
>sp|Q6EQX3|OML5_ORYSJ Protein MEI2-like 5 OS=Oryza sativa subsp. japonica GN=ML5 PE=2
SV=1
Length = 811
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN 226
TLV N+E +VS +EL+ F G V IR + + +EF D AL+ LN
Sbjct: 279 TLVIFNLEPAVSNEELLQIFGAFGEVREIRETPHK---RHHRFIEFYDVRAAESALRSLN 335
Query: 227 GTNLKGKTLQM 237
+++ GK +++
Sbjct: 336 KSDIAGKRVKL 346
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ 73
V +A++ P+ FG + + D Y +ARD+ I + ++ + E+ + +
Sbjct: 666 VDIADVTPEMRSQAKAVNFGIVYGISD---YGLARDIKISRKEAAEFINKYFERYPKVKE 722
Query: 74 HLTNTVFI--DRALVVTPYNS----GEIPDEQRALEIAAQQQGPNS 113
+L NTV D V+T +N +I R L A++ NS
Sbjct: 723 YLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNS 768
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,123,085
Number of Sequences: 539616
Number of extensions: 6168865
Number of successful extensions: 17593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 17532
Number of HSP's gapped (non-prelim): 120
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)