Query psy14559
Match_columns 405
No_of_seqs 308 out of 2050
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 22:58:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-27 2.6E-32 238.5 22.8 164 10-242 2-170 (352)
2 TIGR01659 sex-lethal sex-letha 100.0 2E-27 4.3E-32 236.1 20.5 165 8-242 104-274 (346)
3 TIGR01628 PABP-1234 polyadenyl 100.0 3.1E-27 6.8E-32 250.1 22.3 163 12-241 1-165 (562)
4 TIGR01622 SF-CC1 splicing fact 99.9 5.7E-27 1.2E-31 241.9 20.3 177 8-242 86-265 (457)
5 TIGR01645 half-pint poly-U bin 99.9 1.6E-26 3.4E-31 241.6 20.6 178 7-242 103-283 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.4E-25 3.1E-30 223.5 25.0 231 9-242 87-348 (352)
7 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.1E-25 6.7E-30 231.9 27.9 192 5-243 169-375 (509)
8 KOG4676|consensus 99.9 2.6E-26 5.7E-31 221.1 9.4 251 10-281 6-259 (479)
9 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-23 2.4E-28 223.0 24.0 168 9-241 86-259 (562)
10 KOG0148|consensus 99.9 7.6E-24 1.6E-28 196.0 15.0 176 11-243 62-238 (321)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 8.2E-23 1.8E-27 213.4 20.6 159 8-242 55-221 (578)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.6E-22 7.9E-27 207.7 24.4 221 10-243 95-351 (481)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.9E-22 8.4E-27 207.4 22.6 196 9-242 273-479 (481)
14 KOG0131|consensus 99.9 4.2E-23 9.1E-28 181.3 11.9 170 5-243 3-177 (203)
15 KOG0144|consensus 99.9 1.1E-22 2.5E-27 198.4 12.0 170 8-243 31-206 (510)
16 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-21 2.6E-26 204.8 17.3 164 10-242 137-306 (578)
17 TIGR01622 SF-CC1 splicing fact 99.9 2.9E-20 6.3E-25 192.0 24.9 226 10-241 185-446 (457)
18 KOG0127|consensus 99.9 7.7E-21 1.7E-25 190.1 19.4 223 10-240 116-375 (678)
19 KOG0117|consensus 99.9 4.2E-21 9.1E-26 188.3 16.4 163 9-241 162-329 (506)
20 KOG0145|consensus 99.9 1.9E-21 4E-26 179.2 12.7 163 12-243 42-209 (360)
21 KOG0127|consensus 99.9 3.2E-21 6.9E-26 192.9 15.2 188 12-242 6-195 (678)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.5E-20 5.5E-25 194.8 21.9 191 9-241 293-500 (509)
23 KOG0123|consensus 99.8 2.8E-20 6E-25 186.2 17.9 151 12-243 2-153 (369)
24 KOG0145|consensus 99.8 1.7E-19 3.7E-24 166.3 18.2 222 8-241 124-356 (360)
25 KOG0117|consensus 99.8 3.5E-19 7.5E-24 174.9 20.4 161 8-243 80-248 (506)
26 KOG0109|consensus 99.8 2.9E-20 6.3E-25 173.9 10.9 147 12-243 3-150 (346)
27 KOG0123|consensus 99.8 1.5E-18 3.2E-23 173.7 14.7 166 11-241 76-244 (369)
28 KOG0124|consensus 99.8 1.5E-18 3.2E-23 166.5 13.4 174 11-242 113-289 (544)
29 KOG0110|consensus 99.8 8.2E-19 1.8E-23 180.7 11.6 173 13-242 517-692 (725)
30 PLN03120 nucleic acid binding 99.8 1.2E-19 2.6E-24 170.7 5.0 150 166-337 4-153 (260)
31 KOG0146|consensus 99.8 6.7E-18 1.4E-22 156.4 15.4 77 165-241 284-363 (371)
32 KOG0147|consensus 99.8 9.6E-19 2.1E-23 176.0 10.0 179 9-243 177-358 (549)
33 KOG0148|consensus 99.8 6.5E-18 1.4E-22 156.8 14.1 163 166-337 62-243 (321)
34 KOG4205|consensus 99.7 8.2E-18 1.8E-22 163.5 12.4 171 9-243 4-176 (311)
35 KOG0144|consensus 99.7 2.9E-17 6.4E-22 160.8 13.3 78 166-243 424-504 (510)
36 KOG1548|consensus 99.7 1.7E-16 3.6E-21 151.9 11.1 177 166-354 134-329 (382)
37 KOG0105|consensus 99.7 7.2E-16 1.6E-20 136.1 14.1 173 8-231 3-176 (241)
38 PLN03121 nucleic acid binding 99.7 4.5E-17 9.7E-22 151.1 5.7 148 166-323 5-152 (243)
39 TIGR01659 sex-lethal sex-letha 99.7 6.2E-16 1.4E-20 154.0 13.2 146 165-322 106-261 (346)
40 KOG0110|consensus 99.7 2.3E-15 5E-20 155.5 16.9 206 8-241 382-596 (725)
41 PLN03134 glycine-rich RNA-bind 99.7 1.9E-15 4.2E-20 132.5 13.7 77 166-242 34-113 (144)
42 KOG4206|consensus 99.6 2.4E-14 5.1E-19 130.8 19.1 209 6-241 4-220 (221)
43 TIGR01645 half-pint poly-U bin 99.6 3.2E-15 7E-20 157.0 13.6 148 166-325 107-275 (612)
44 KOG1457|consensus 99.6 1.3E-14 2.7E-19 131.7 12.8 213 6-231 29-274 (284)
45 PF00076 RRM_1: RNA recognitio 99.6 1.2E-14 2.5E-19 110.3 9.1 68 169-236 1-70 (70)
46 KOG0147|consensus 99.6 1.7E-14 3.7E-19 145.6 11.8 212 8-241 275-526 (549)
47 KOG4211|consensus 99.5 2.3E-13 5.1E-18 135.8 16.3 173 7-241 6-180 (510)
48 KOG4212|consensus 99.5 3E-12 6.4E-17 126.0 18.0 220 9-240 42-291 (608)
49 KOG0125|consensus 99.4 3E-13 6.5E-18 129.0 9.9 80 166-245 96-176 (376)
50 PLN03134 glycine-rich RNA-bind 99.4 5.4E-13 1.2E-17 117.0 10.6 82 8-92 31-112 (144)
51 PF14259 RRM_6: RNA recognitio 99.4 5.3E-13 1.2E-17 101.8 8.7 68 169-236 1-70 (70)
52 KOG0106|consensus 99.4 3.7E-13 8.1E-18 123.9 8.5 164 12-238 2-166 (216)
53 KOG0121|consensus 99.4 3.7E-13 8E-18 112.5 7.2 76 166-241 36-114 (153)
54 KOG0126|consensus 99.4 4.9E-14 1.1E-18 124.3 1.9 78 166-243 35-115 (219)
55 PLN03213 repressor of silencin 99.4 7.3E-13 1.6E-17 131.9 10.2 74 166-241 10-86 (759)
56 KOG0131|consensus 99.4 2.4E-12 5.2E-17 113.8 10.8 152 166-324 9-167 (203)
57 KOG0121|consensus 99.4 6.8E-13 1.5E-17 110.9 6.8 83 8-93 33-115 (153)
58 smart00362 RRM_2 RNA recogniti 99.4 3E-12 6.6E-17 95.9 9.7 71 168-238 1-72 (72)
59 PF00076 RRM_1: RNA recognitio 99.4 1.9E-12 4.1E-17 98.0 7.9 65 14-82 1-65 (70)
60 KOG0149|consensus 99.4 1E-12 2.2E-17 120.5 7.5 77 166-242 12-90 (247)
61 PLN03121 nucleic acid binding 99.4 2.4E-12 5.1E-17 119.8 9.9 78 10-93 4-81 (243)
62 PLN03120 nucleic acid binding 99.4 2.1E-12 4.6E-17 121.9 9.8 77 11-93 4-80 (260)
63 KOG0107|consensus 99.3 2.4E-12 5.2E-17 113.1 7.6 75 166-243 10-85 (195)
64 KOG0114|consensus 99.3 1.1E-11 2.4E-16 100.1 9.9 75 166-241 18-93 (124)
65 KOG1190|consensus 99.3 5.8E-11 1.3E-15 116.3 16.5 187 11-242 297-490 (492)
66 KOG0122|consensus 99.3 9.3E-12 2E-16 114.7 9.2 77 165-241 188-267 (270)
67 PF14259 RRM_6: RNA recognitio 99.3 1.3E-11 2.9E-16 94.1 8.0 66 14-83 1-66 (70)
68 KOG0113|consensus 99.3 2.4E-11 5.1E-16 114.8 10.7 80 164-243 99-181 (335)
69 COG0724 RNA-binding proteins ( 99.3 8.3E-11 1.8E-15 110.3 13.8 143 11-199 115-258 (306)
70 smart00360 RRM RNA recognition 99.3 2.8E-11 6.1E-16 90.1 8.5 68 171-238 1-71 (71)
71 COG0724 RNA-binding proteins ( 99.3 2.6E-11 5.7E-16 113.7 10.3 76 166-241 115-193 (306)
72 KOG1548|consensus 99.2 8.6E-10 1.9E-14 106.3 20.0 195 11-240 134-349 (382)
73 cd00590 RRM RRM (RNA recogniti 99.2 6.7E-11 1.4E-15 89.0 9.9 72 168-239 1-74 (74)
74 KOG0124|consensus 99.2 2.6E-11 5.5E-16 117.1 8.9 75 166-240 113-190 (544)
75 KOG0111|consensus 99.2 9E-12 1.9E-16 113.0 5.3 78 166-243 10-90 (298)
76 KOG4207|consensus 99.2 1.4E-11 3E-16 111.0 6.4 76 167-242 14-92 (256)
77 KOG0120|consensus 99.2 9.5E-11 2.1E-15 119.8 10.2 185 3-241 167-367 (500)
78 KOG0149|consensus 99.2 5.4E-11 1.2E-15 109.3 7.3 75 10-87 11-85 (247)
79 KOG0114|consensus 99.2 1.2E-10 2.6E-15 94.2 8.1 78 9-92 16-93 (124)
80 KOG0108|consensus 99.2 6.7E-11 1.5E-15 120.1 8.4 77 167-243 19-98 (435)
81 KOG0105|consensus 99.2 6.5E-11 1.4E-15 105.0 7.0 77 166-243 6-83 (241)
82 KOG0122|consensus 99.1 1.3E-10 2.8E-15 107.2 8.6 82 8-92 186-267 (270)
83 PF13893 RRM_5: RNA recognitio 99.1 3.1E-10 6.7E-15 83.0 8.6 55 183-240 1-56 (56)
84 KOG1190|consensus 99.1 2.7E-09 5.9E-14 104.7 16.9 217 8-244 147-374 (492)
85 KOG4454|consensus 99.1 2E-11 4.4E-16 110.8 1.5 153 3-239 1-159 (267)
86 KOG0113|consensus 99.1 2.9E-10 6.3E-15 107.6 8.2 82 9-93 99-180 (335)
87 KOG0107|consensus 99.0 4.2E-10 9E-15 99.2 7.3 77 9-93 8-84 (195)
88 KOG0130|consensus 99.0 3.6E-10 7.8E-15 95.5 6.4 76 166-241 72-150 (170)
89 smart00362 RRM_2 RNA recogniti 99.0 1E-09 2.2E-14 82.0 8.2 66 13-83 1-66 (72)
90 smart00361 RRM_1 RNA recogniti 99.0 1.4E-09 3E-14 83.5 8.1 58 180-237 2-69 (70)
91 KOG0109|consensus 99.0 8E-10 1.7E-14 104.3 6.7 71 167-243 3-74 (346)
92 smart00360 RRM RNA recognition 99.0 2.2E-09 4.9E-14 79.7 7.6 64 16-82 1-64 (71)
93 KOG4206|consensus 99.0 1.7E-09 3.6E-14 99.2 7.9 77 166-243 9-90 (221)
94 KOG4212|consensus 99.0 1.6E-09 3.4E-14 107.0 8.2 76 166-241 44-122 (608)
95 KOG0125|consensus 99.0 1.4E-09 3.1E-14 104.1 7.4 80 6-90 91-170 (376)
96 KOG0126|consensus 98.9 2.8E-10 6.1E-15 100.7 2.3 84 10-96 34-118 (219)
97 cd00590 RRM RRM (RNA recogniti 98.9 4.6E-09 9.9E-14 78.8 8.6 68 13-84 1-68 (74)
98 KOG4207|consensus 98.9 1.2E-09 2.7E-14 98.5 5.9 78 10-90 12-89 (256)
99 KOG4205|consensus 98.9 9.4E-10 2E-14 107.4 5.6 78 166-243 6-85 (311)
100 PLN03213 repressor of silencin 98.9 3.5E-09 7.5E-14 106.0 8.9 76 8-90 7-85 (759)
101 KOG0120|consensus 98.9 8.6E-09 1.9E-13 105.6 11.4 188 8-241 286-490 (500)
102 KOG0128|consensus 98.9 2.8E-10 6E-15 120.3 -0.9 147 10-242 666-814 (881)
103 KOG0129|consensus 98.8 4.8E-08 1E-12 98.9 12.8 155 10-224 258-431 (520)
104 KOG0415|consensus 98.8 8E-09 1.7E-13 99.8 6.4 78 166-243 239-319 (479)
105 KOG1456|consensus 98.8 9.8E-07 2.1E-11 86.1 19.8 221 7-246 116-366 (494)
106 KOG0153|consensus 98.7 2.4E-08 5.3E-13 96.4 8.0 77 162-242 224-302 (377)
107 KOG0112|consensus 98.7 1.5E-08 3.2E-13 108.0 5.6 160 8-243 369-531 (975)
108 KOG1365|consensus 98.7 1.1E-07 2.3E-12 92.9 11.1 189 12-240 162-359 (508)
109 KOG0132|consensus 98.7 4.6E-08 1E-12 102.8 8.2 74 166-243 421-495 (894)
110 KOG0130|consensus 98.7 3.7E-08 8.1E-13 83.4 6.1 76 11-90 72-148 (170)
111 KOG0111|consensus 98.7 2.2E-08 4.8E-13 91.2 5.0 80 6-88 5-85 (298)
112 KOG4211|consensus 98.7 3.3E-07 7.2E-12 92.3 13.2 217 9-237 101-352 (510)
113 KOG4210|consensus 98.6 1.4E-08 2.9E-13 98.8 3.2 174 9-241 86-262 (285)
114 KOG0108|consensus 98.6 8.8E-08 1.9E-12 97.6 7.7 78 12-92 19-96 (435)
115 KOG4661|consensus 98.6 1.1E-07 2.3E-12 96.8 7.8 81 163-243 402-485 (940)
116 KOG1456|consensus 98.6 4.9E-06 1.1E-10 81.3 18.8 196 6-241 282-489 (494)
117 KOG4208|consensus 98.6 1.8E-07 3.9E-12 84.8 8.0 75 166-240 49-127 (214)
118 smart00361 RRM_1 RNA recogniti 98.5 2.6E-07 5.6E-12 70.8 7.2 60 25-85 2-66 (70)
119 KOG4209|consensus 98.5 1.1E-07 2.4E-12 89.6 5.8 81 163-243 98-180 (231)
120 KOG4454|consensus 98.5 5.1E-08 1.1E-12 88.9 2.8 141 166-324 9-153 (267)
121 KOG0132|consensus 98.5 2.7E-07 5.8E-12 97.2 7.0 74 11-93 421-494 (894)
122 PF13893 RRM_5: RNA recognitio 98.5 3.7E-07 8.1E-12 66.5 5.7 51 28-86 1-52 (56)
123 KOG0153|consensus 98.4 4.2E-07 9E-12 88.0 7.0 74 11-93 228-302 (377)
124 KOG0146|consensus 98.4 2.7E-07 6E-12 86.4 5.3 76 166-241 19-99 (371)
125 KOG0116|consensus 98.4 5.4E-07 1.2E-11 91.4 7.8 77 166-242 288-366 (419)
126 KOG0415|consensus 98.4 3.7E-07 8E-12 88.5 5.9 81 8-91 236-316 (479)
127 KOG0106|consensus 98.4 5.1E-07 1.1E-11 83.5 5.9 69 168-242 3-72 (216)
128 KOG4307|consensus 98.4 2E-06 4.4E-11 89.6 10.5 200 9-241 309-512 (944)
129 KOG0533|consensus 98.4 1.5E-06 3.2E-11 82.1 8.7 78 166-243 83-162 (243)
130 KOG4660|consensus 98.3 5.8E-07 1.3E-11 91.9 5.9 71 7-85 71-142 (549)
131 KOG4660|consensus 98.3 4.7E-07 1E-11 92.5 5.2 71 163-236 72-143 (549)
132 KOG0226|consensus 98.3 6.5E-07 1.4E-11 83.4 5.3 168 9-240 94-267 (290)
133 KOG4208|consensus 98.3 1.6E-06 3.4E-11 78.8 6.8 77 9-88 47-125 (214)
134 KOG0116|consensus 98.2 1.7E-06 3.6E-11 87.9 6.5 76 10-89 287-362 (419)
135 KOG0151|consensus 98.1 6.4E-06 1.4E-10 86.2 8.2 78 166-243 174-257 (877)
136 PF11608 Limkain-b1: Limkain b 98.1 1.3E-05 2.9E-10 62.8 7.9 67 167-241 3-75 (90)
137 KOG1365|consensus 98.1 9E-06 1.9E-10 79.8 8.4 285 10-364 59-349 (508)
138 KOG1457|consensus 98.1 3E-05 6.5E-10 71.3 10.6 78 166-243 34-118 (284)
139 KOG4209|consensus 97.9 1.1E-05 2.5E-10 76.0 5.5 82 8-92 98-179 (231)
140 KOG4661|consensus 97.9 1.5E-05 3.4E-10 81.5 6.7 79 11-92 405-483 (940)
141 PF04059 RRM_2: RNA recognitio 97.9 9.4E-05 2E-09 60.3 8.9 75 167-241 2-85 (97)
142 KOG0533|consensus 97.7 8.7E-05 1.9E-09 70.2 7.5 76 10-89 82-157 (243)
143 KOG0151|consensus 97.5 0.00012 2.7E-09 76.8 5.9 74 8-82 171-245 (877)
144 KOG1995|consensus 97.5 9.2E-05 2E-09 72.5 4.1 76 166-241 66-152 (351)
145 KOG4676|consensus 97.5 7E-05 1.5E-09 73.8 3.0 133 149-282 35-169 (479)
146 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00056 1.2E-08 49.5 5.9 52 167-223 2-53 (53)
147 KOG0128|consensus 97.3 1.4E-05 3.1E-10 85.3 -3.8 164 9-232 569-735 (881)
148 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00045 9.7E-09 50.0 5.1 52 12-73 2-53 (53)
149 PF08777 RRM_3: RNA binding mo 97.3 0.00084 1.8E-08 55.7 7.3 54 167-224 2-55 (105)
150 KOG0226|consensus 97.3 0.00024 5.3E-09 66.5 4.4 78 8-88 187-264 (290)
151 COG5175 MOT2 Transcriptional r 97.3 0.00059 1.3E-08 66.3 6.9 76 166-241 114-201 (480)
152 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0015 3.2E-08 53.7 8.0 75 166-241 6-90 (100)
153 PF08777 RRM_3: RNA binding mo 97.2 0.00087 1.9E-08 55.6 6.0 54 12-74 2-55 (105)
154 KOG2193|consensus 97.2 3.6E-05 7.8E-10 76.5 -2.7 149 12-240 2-154 (584)
155 PF04059 RRM_2: RNA recognitio 96.9 0.0028 6.1E-08 51.7 6.4 59 12-73 2-62 (97)
156 KOG4307|consensus 96.9 0.0027 5.9E-08 66.9 7.9 71 168-238 869-942 (944)
157 KOG4210|consensus 96.8 0.00088 1.9E-08 65.3 3.1 75 8-86 181-256 (285)
158 KOG1855|consensus 96.6 0.0021 4.5E-08 64.4 3.9 72 9-80 229-310 (484)
159 KOG1855|consensus 96.6 0.0035 7.6E-08 62.8 5.4 62 165-226 230-306 (484)
160 PF08952 DUF1866: Domain of un 96.5 0.012 2.5E-07 51.4 7.8 54 182-241 52-105 (146)
161 KOG3152|consensus 96.4 0.0021 4.5E-08 60.5 2.7 68 167-234 75-157 (278)
162 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.016 3.5E-07 47.6 7.0 81 10-91 5-89 (100)
163 PF11608 Limkain-b1: Limkain b 96.2 0.018 4E-07 45.4 6.7 65 12-89 3-73 (90)
164 KOG1996|consensus 96.1 0.015 3.2E-07 55.8 6.6 61 181-241 301-365 (378)
165 KOG3152|consensus 96.1 0.0034 7.3E-08 59.1 2.3 72 10-81 73-153 (278)
166 KOG4849|consensus 96.0 0.0062 1.3E-07 59.6 3.9 75 166-240 80-159 (498)
167 KOG2314|consensus 95.8 0.012 2.5E-07 61.0 5.1 75 166-240 58-141 (698)
168 KOG2202|consensus 95.8 0.004 8.7E-08 58.7 1.6 61 181-241 83-146 (260)
169 PF08675 RNA_bind: RNA binding 95.3 0.07 1.5E-06 42.1 6.4 58 8-77 6-63 (87)
170 COG5175 MOT2 Transcriptional r 95.0 0.043 9.2E-07 53.7 5.6 74 12-87 115-196 (480)
171 KOG0129|consensus 94.8 0.096 2.1E-06 54.0 7.8 82 7-91 366-452 (520)
172 KOG2314|consensus 94.6 0.081 1.7E-06 55.0 6.6 73 8-84 55-133 (698)
173 KOG4849|consensus 94.3 0.039 8.5E-07 54.1 3.5 82 8-92 77-160 (498)
174 KOG2193|consensus 94.3 0.053 1.1E-06 54.5 4.3 70 168-241 3-74 (584)
175 KOG2253|consensus 94.1 0.067 1.4E-06 56.6 5.0 67 166-239 40-107 (668)
176 PF10309 DUF2414: Protein of u 94.0 0.32 6.8E-06 36.3 7.0 53 166-224 5-60 (62)
177 KOG1995|consensus 94.0 0.069 1.5E-06 52.7 4.4 77 8-87 63-148 (351)
178 KOG0115|consensus 93.3 0.071 1.5E-06 50.4 3.2 61 12-76 32-92 (275)
179 KOG0115|consensus 93.2 0.1 2.2E-06 49.4 3.9 74 167-240 32-111 (275)
180 KOG0112|consensus 93.0 0.023 5.1E-07 61.8 -0.5 77 164-240 370-448 (975)
181 KOG4285|consensus 92.5 0.39 8.5E-06 46.5 6.9 69 168-241 199-268 (350)
182 PF07576 BRAP2: BRCA1-associat 92.4 1.2 2.5E-05 37.3 8.9 65 168-232 15-81 (110)
183 KOG2202|consensus 91.7 0.062 1.3E-06 50.8 0.6 59 26-88 83-142 (260)
184 KOG1996|consensus 91.6 0.41 8.8E-06 46.2 5.9 66 25-92 300-365 (378)
185 KOG2416|consensus 91.6 0.088 1.9E-06 55.1 1.5 62 8-78 441-503 (718)
186 KOG2068|consensus 91.2 0.081 1.8E-06 51.9 0.8 76 166-241 77-161 (327)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 90.5 0.4 8.7E-06 43.4 4.6 74 10-84 6-84 (176)
188 KOG4285|consensus 89.6 0.66 1.4E-05 45.0 5.4 72 12-93 198-270 (350)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 88.7 0.51 1.1E-05 42.8 3.9 76 166-241 7-96 (176)
190 PF08675 RNA_bind: RNA binding 88.4 1.8 3.9E-05 34.3 6.2 53 167-226 10-63 (87)
191 PF08952 DUF1866: Domain of un 87.9 2.1 4.5E-05 37.5 6.9 73 8-91 24-105 (146)
192 PF15023 DUF4523: Protein of u 87.2 1.8 4E-05 37.7 6.1 61 8-78 83-147 (166)
193 PF10309 DUF2414: Protein of u 87.1 2.8 6E-05 31.3 6.3 52 12-75 6-61 (62)
194 PF04847 Calcipressin: Calcipr 87.1 2 4.3E-05 39.2 6.7 59 179-241 8-69 (184)
195 KOG2416|consensus 87.1 0.51 1.1E-05 49.6 3.1 73 165-241 443-520 (718)
196 KOG2591|consensus 87.0 1 2.2E-05 47.1 5.2 66 166-236 175-245 (684)
197 KOG2135|consensus 86.6 0.46 1E-05 48.6 2.5 73 166-242 372-445 (526)
198 PF15023 DUF4523: Protein of u 85.9 3.1 6.8E-05 36.3 6.8 68 166-239 86-158 (166)
199 KOG0804|consensus 85.9 2.5 5.4E-05 43.3 7.2 68 166-233 74-143 (493)
200 KOG2591|consensus 80.4 3.6 7.8E-05 43.2 5.9 57 10-76 174-232 (684)
201 KOG4574|consensus 77.8 2.7 5.8E-05 46.2 4.2 74 166-243 298-374 (1007)
202 PF03880 DbpA: DbpA RNA bindin 72.9 15 0.00033 28.0 6.3 57 177-240 12-74 (74)
203 KOG2253|consensus 64.0 3.6 7.8E-05 44.0 1.5 65 8-84 37-101 (668)
204 KOG2135|consensus 56.9 7.1 0.00015 40.3 2.1 73 10-92 371-444 (526)
205 KOG2068|consensus 54.3 9.2 0.0002 37.8 2.3 73 12-85 78-154 (327)
206 PF03468 XS: XS domain; Inter 52.1 24 0.00051 29.7 4.2 47 178-225 29-76 (116)
207 KOG2318|consensus 49.6 80 0.0017 33.8 8.3 78 163-240 171-305 (650)
208 KOG4410|consensus 47.0 1.7E+02 0.0037 28.6 9.5 48 166-217 330-378 (396)
209 PF10567 Nab6_mRNP_bdg: RNA-re 44.6 32 0.00068 33.6 4.3 61 8-68 12-76 (309)
210 PF15513 DUF4651: Domain of un 43.5 46 0.00099 24.8 4.0 18 26-43 9-26 (62)
211 KOG4483|consensus 43.1 55 0.0012 33.4 5.8 64 166-234 391-455 (528)
212 PF03468 XS: XS domain; Inter 41.9 38 0.00082 28.5 3.9 57 13-75 10-76 (116)
213 KOG4410|consensus 41.1 46 0.00099 32.4 4.7 50 11-69 330-380 (396)
214 PF04847 Calcipressin: Calcipr 39.6 86 0.0019 28.6 6.2 54 24-86 8-64 (184)
215 PF15513 DUF4651: Domain of un 39.0 60 0.0013 24.2 4.1 18 181-198 9-26 (62)
216 KOG4008|consensus 38.5 21 0.00046 33.7 2.0 36 8-43 37-72 (261)
217 KOG4008|consensus 35.9 27 0.00059 33.0 2.3 33 166-198 40-72 (261)
218 KOG4213|consensus 35.7 31 0.00067 31.4 2.5 74 151-229 96-173 (205)
219 PF11767 SET_assoc: Histone ly 35.5 1.9E+02 0.0042 21.7 7.1 54 177-237 11-65 (66)
220 KOG2318|consensus 34.2 45 0.00097 35.6 3.8 40 8-47 171-215 (650)
221 PF07576 BRAP2: BRCA1-associat 33.4 2.8E+02 0.0061 23.0 8.0 62 9-75 11-73 (110)
222 KOG0156|consensus 29.8 1.1E+02 0.0024 32.2 6.0 59 170-235 36-97 (489)
223 PF10567 Nab6_mRNP_bdg: RNA-re 28.9 76 0.0016 31.1 4.1 76 166-241 15-106 (309)
224 PF07292 NID: Nmi/IFP 35 domai 28.8 29 0.00064 27.7 1.1 23 166-188 52-74 (88)
225 PF09707 Cas_Cas2CT1978: CRISP 26.0 1.4E+02 0.003 23.8 4.5 49 166-215 25-73 (86)
226 PF14111 DUF4283: Domain of un 25.9 1.3E+02 0.0027 25.7 4.8 31 169-199 107-138 (153)
227 KOG2891|consensus 23.1 68 0.0015 31.1 2.6 56 11-67 149-219 (445)
228 TIGR03636 L23_arch archaeal ri 23.0 2.6E+02 0.0056 21.7 5.4 54 168-222 15-70 (77)
229 cd04883 ACT_AcuB C-terminal AC 22.3 3.1E+02 0.0066 19.8 6.9 51 181-231 16-69 (72)
230 PRK14548 50S ribosomal protein 20.3 2.8E+02 0.006 22.0 5.2 54 168-222 22-77 (84)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.2e-27 Score=238.48 Aligned_cols=164 Identities=15% Similarity=0.236 Sum_probs=135.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
+..+|||+|||+.+|+++|+++|+.||+|.+|+|.. +..+++++|||||+|.+.++|+.|+..+|+..+.+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~---d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVR---DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEE---cCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEE
Confidence 467999999999999999999999999999999944 33468899999999999999999997666555554444444
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559 90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL 169 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv 169 (405)
+.... . .....++|
T Consensus 79 ~a~~~-----------------------------------------------~-------------------~~~~~~~l 92 (352)
T TIGR01661 79 YARPS-----------------------------------------------S-------------------DSIKGANL 92 (352)
T ss_pred eeccc-----------------------------------------------c-------------------cccccceE
Confidence 32210 0 00014689
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccC
Q psy14559 170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQ 242 (405)
Q Consensus 170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~ 242 (405)
||+|||.++++++|+++|++||.|..++++.+ ++.++|||||+|.+.++|+.|+. |||..+.| ++|.|.++..
T Consensus 93 ~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 93 YVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred EECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence 99999999999999999999999999999765 56789999999999999999998 99999887 5788888753
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=2e-27 Score=236.12 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=135.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~ 86 (405)
....++|||+|||+++|+++|+++|+.||+|++|+|.. |..+++++|||||+|.++++|+.|++.+|. .+.++.+.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~---d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMR---DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 44678999999999999999999999999999999943 335788999999999999999999965444 44444333
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
+.+... . . .....
T Consensus 181 -V~~a~p--------------~---------------------------------~-------------------~~~~~ 193 (346)
T TIGR01659 181 -VSYARP--------------G---------------------------------G-------------------ESIKD 193 (346)
T ss_pred -eecccc--------------c---------------------------------c-------------------ccccc
Confidence 222110 0 0 00014
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeecc
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHST 241 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~ 241 (405)
.+|||+|||+++|+++|+++|++||.|..++++.+ +++++|||||+|.+.++|++|++ ||+..+.| ++|+|..+.
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 58999999999999999999999999999999766 77899999999999999999999 99998876 688998876
Q ss_pred C
Q psy14559 242 Q 242 (405)
Q Consensus 242 ~ 242 (405)
.
T Consensus 274 ~ 274 (346)
T TIGR01659 274 E 274 (346)
T ss_pred c
Confidence 4
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.1e-27 Score=250.09 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=134.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
.+|||+|||+++||++|+++|+.||.|.+|++.. |..+++++|||||+|.+.++|+.|+...|...+.+..+.+.|.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~---d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCR---DSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 3799999999999999999999999999999943 3356889999999999999999999766655444444444432
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559 92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA 171 (405)
Q Consensus 92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV 171 (405)
.. ++..... ...+|||
T Consensus 78 ~~---------------------------------------------~~~~~~~-------------------~~~~vfV 93 (562)
T TIGR01628 78 QR---------------------------------------------DPSLRRS-------------------GVGNIFV 93 (562)
T ss_pred cc---------------------------------------------ccccccc-------------------CCCceEE
Confidence 21 0000000 1457999
Q ss_pred eCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 172 INIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+|||.++++++|+++|+.||.|.+|++..+ +++++|||||+|.+.++|..|+. +||..+.|+.|.|....
T Consensus 94 ~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 94 KNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred cCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 999999999999999999999999999765 67899999999999999999998 99999999999997654
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=5.7e-27 Score=241.90 Aligned_cols=177 Identities=20% Similarity=0.331 Sum_probs=142.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+.+|+++|+++|+.||+|.+|+++ . +..+++++|||||+|.+.++|..|+.+++..+.++.+.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~-~--d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCI-K--DRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-e--cCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEE
Confidence 3457899999999999999999999999999999994 3 335688999999999999999999998888888777665
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
....... . .. ... ....+.. ....+
T Consensus 163 ~~~~~~~----~--~~--~~~-----------------------------------~~~~~~~------------~p~~~ 187 (457)
T TIGR01622 163 QSSQAEK----N--RA--AKA-----------------------------------ATHQPGD------------IPNFL 187 (457)
T ss_pred eecchhh----h--hh--hhc-----------------------------------ccccCCC------------CCCCC
Confidence 4321100 0 00 000 0000000 00157
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
+|||+|||+.+|+++|+++|++||.|..|.+..+ +|.++|||||+|.+.++|..|+. |||..+.|++|.|.++..
T Consensus 188 ~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 188 KLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 8999999999999999999999999999999765 56889999999999999999998 999999999999999763
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=1.6e-26 Score=241.64 Aligned_cols=178 Identities=13% Similarity=0.228 Sum_probs=139.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+....++|||+|||+.+|+++|+++|+.||+|.+|++ +. |..+++++|||||+|.+.++|+.|++.+|+..++++.+
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I-~~--D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~I 179 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SW--DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 179 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEE-ee--cCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEeccee
Confidence 3456789999999999999999999999999999999 33 33578899999999999999999997655555544443
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
.+...... +. . .+.... ........
T Consensus 180 kV~rp~~~-p~----------a------------------------------~~~~~~--------------~~~~~~~~ 204 (612)
T TIGR01645 180 KVGRPSNM-PQ----------A------------------------------QPIIDM--------------VQEEAKKF 204 (612)
T ss_pred eecccccc-cc----------c------------------------------cccccc--------------cccccccc
Confidence 33211100 00 0 000000 00001124
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
++|||+|||+++++++|+++|+.||.|.++++..+ ++.++|||||+|.+.++|..|+. |||..++|+.|+|.++..
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 68999999999999999999999999999999876 56789999999999999999998 999999999999998864
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=1.4e-25 Score=223.55 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=141.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc--eeE
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR--ALV 86 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~--~~~ 86 (405)
...++|||+|||+.+|+++|+++|+.||.|..+++... . .++.++|||||+|.+.++|+.|++.+|+..+.+ ..+
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~-~--~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i 163 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSD-N--VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPI 163 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEec-C--CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 35678999999999999999999999999999999432 2 356789999999999999999997555544432 233
Q ss_pred EeecCCCCCchHHHHHHH----H-hccCCCCCCC------CCCCCcc-cccccCCCCC---cc-----cccCCcccccCC
Q psy14559 87 VTPYNSGEIPDEQRALEI----A-AQQQGPNSGE------PKLPAHV-TNQIEGVPPN---QV-----ISTHDPVLVQHG 146 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l----~-~~~~g~~~~~------~~~~~~~-~~~~~~~~~~---~~-----~~~~dp~~~~~~ 146 (405)
.+.+.+.......+.... . .......+.. ...+.+. .......... .. .....+......
T Consensus 164 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR01661 164 TVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQR 243 (352)
T ss_pred EEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccccc
Confidence 444443211000000000 0 0000000000 0000000 0000000000 00 000000000000
Q ss_pred -CCCCC-----CCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHH
Q psy14559 147 -LPQYP-----PLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQAC 218 (405)
Q Consensus 147 -~~~~p-----~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~ 218 (405)
.+... ..............+++|||+|||+++++++|+++|++||.|.+++++.| ++.++|||||+|.+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 244 ASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred CCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 00000 00000001111223568999999999999999999999999999999866 78899999999999999
Q ss_pred HHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 219 VIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 219 A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
|.+|+. |||..|+||.|+|.++..
T Consensus 324 A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 324 AAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred HHHHHHHhCCCEECCeEEEEEEccC
Confidence 999998 999999999999999864
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.1e-25 Score=231.89 Aligned_cols=192 Identities=14% Similarity=0.231 Sum_probs=135.8
Q ss_pred ccCCCCCcEEEEcCCCCCCCHHHHHHHhccC------------CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHH
Q psy14559 5 TVAPVKTKVVQVANIAPQATRDQMQTLFGYL------------GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS 72 (405)
Q Consensus 5 ~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~------------G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~A 72 (405)
.......++|||||||+.+|+++|+++|+.| +.|..+.+ ++.+|||||+|.+.++|..|
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------~~~kg~afVeF~~~e~A~~A 239 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------NKEKNFAFLEFRTVEEATFA 239 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------CCCCCEEEEEeCCHHHHhhh
Confidence 3445667999999999999999999999974 34555555 34589999999999999999
Q ss_pred HhccCCccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCC
Q psy14559 73 QHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPP 152 (405)
Q Consensus 73 l~~~n~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~ 152 (405)
|.+++..+.+..+.+....... +.. . . .+ .. .+ ...+........+.
T Consensus 240 l~l~g~~~~g~~l~v~r~~~~~-~~~---------~------~--~~-~~-~~----------~~~~~~~~~~~~~~--- 286 (509)
T TIGR01642 240 MALDSIIYSNVFLKIRRPHDYI-PVP---------Q------I--TP-EV-SQ----------KNPDDNAKNVEKLV--- 286 (509)
T ss_pred hcCCCeEeeCceeEecCccccC-Ccc---------c------c--CC-CC-CC----------CCCccccccccccc---
Confidence 9877776666665543211100 000 0 0 00 00 00 00000000000000
Q ss_pred CCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCce
Q psy14559 153 LPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTN 229 (405)
Q Consensus 153 ~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~ 229 (405)
.........++|||+|||+.+++++|+++|+.||.|..+.++.+ +|.++|||||+|.+.++|..|+. |||..
T Consensus 287 -----~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~ 361 (509)
T TIGR01642 287 -----NSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD 361 (509)
T ss_pred -----ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 00111123679999999999999999999999999999999765 67899999999999999999998 99999
Q ss_pred eCCeeEEEeeccCC
Q psy14559 230 LKGKTLQMFHSTQS 243 (405)
Q Consensus 230 l~g~~i~V~~a~~~ 243 (405)
|.|+.|.|.++...
T Consensus 362 ~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 362 TGDNKLHVQRACVG 375 (509)
T ss_pred ECCeEEEEEECccC
Confidence 99999999998543
No 8
>KOG4676|consensus
Probab=99.93 E-value=2.6e-26 Score=221.14 Aligned_cols=251 Identities=38% Similarity=0.550 Sum_probs=213.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
....|.|.||++++|.++|+.||...|+|.+++|||+..+...+.....|||.|.+...+..|++++|++|+|++++|++
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 34599999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHhccC---CCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 90 YNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
+.+..+|++. ++.+++.++ ++.++.+.|++.......+..+++++ ..|++|+..+..+.++..
T Consensus 86 ~~~~~~p~r~-af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ail-------------ktP~Lp~~~~A~kleeir 151 (479)
T KOG4676|consen 86 YGDEVIPDRF-AFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAIL-------------KTPELPPQAAAKKLEEIR 151 (479)
T ss_pred cCCCCCccHH-HHHhcCcccccccccCCCCccCCCCccccccCCcccee-------------cCCCCChHhhhhhhHHHH
Confidence 9999999987 888777665 66777777775444433333322222 225666677777888889
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCCCC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~~~ 246 (405)
+|++|++|+...-..++.+.|..+|+|.+..+.. +...-+|-++|....+...|+.++|..+. ++++...+.+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as--k~~s~~c~~sf~~qts~~halr~~gre~k-----~qhsr~ai~k 224 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS--KSRSSSCSHSFRKQTSSKHALRSHGRERK-----RQHSRRAIIK 224 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc--cCCCcchhhhHhhhhhHHHHHHhcchhhh-----hhhhhhhhcC
Confidence 9999999999999999999999999998887754 33345788999999999999999988876 6677777889
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhhhhhccCccc
Q psy14559 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVI 281 (405)
Q Consensus 247 p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~ 281 (405)
|..+..+.++.++.+++...++.+.++++.|++..
T Consensus 225 P~kK~~k~a~~~is~s~s~~r~~r~~~~~~i~~~~ 259 (479)
T KOG4676|consen 225 PHKKRSKSAERRISRSRSHSRDKRKDTREKIKEKE 259 (479)
T ss_pred ccccchHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 99999899999999999999999999999888754
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=1.1e-23 Score=223.04 Aligned_cols=168 Identities=15% Similarity=0.219 Sum_probs=134.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
....+|||+|||+++|+++|+++|+.||.|.+|++. .+. +++++|||||+|.+.++|..|+...|+..+++..+.+
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~-~~~---~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVA-TDE---NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEee-ecC---CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 345689999999999999999999999999999994 332 4678999999999999999999765555544433333
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
...... .. .. . ......++
T Consensus 162 ~~~~~~---~~-------------------------------------------~~-~--------------~~~~~~~~ 180 (562)
T TIGR01628 162 GRFIKK---HE-------------------------------------------RE-A--------------APLKKFTN 180 (562)
T ss_pred eccccc---cc-------------------------------------------cc-c--------------ccccCCCe
Confidence 211100 00 00 0 00011468
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeC----CeeEEEeecc
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLK----GKTLQMFHST 241 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~----g~~i~V~~a~ 241 (405)
|||+|||+++|+++|+++|+.||.|.++.++.+ ++.++|||||+|.+.++|.+|++ |||..+. |+.|.|..+.
T Consensus 181 l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~ 259 (562)
T TIGR01628 181 LYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQ 259 (562)
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeeccc
Confidence 999999999999999999999999999999766 67889999999999999999998 9999999 9999998875
No 10
>KOG0148|consensus
Probab=99.91 E-value=7.6e-24 Score=196.02 Aligned_cols=176 Identities=18% Similarity=0.302 Sum_probs=145.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
.--|||+.|++.++-++||+-|.+||+|.+++++ +|..+++++|||||.|-+.++|+.|+..+|+-.++++.+...|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvi---rD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVI---RDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEe---ecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 4569999999999999999999999999999994 4667999999999999999999999999999999999998888
Q ss_pred CCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEE
Q psy14559 91 NSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLV 170 (405)
Q Consensus 91 ~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvf 170 (405)
+..+..+. ++ ..+ ..+.- ..+.+-..++||
T Consensus 139 ATRKp~e~--------n~-------~~l------------------tfdeV-----------------~NQssp~NtsVY 168 (321)
T KOG0148|consen 139 ATRKPSEM--------NG-------KPL------------------TFDEV-----------------YNQSSPDNTSVY 168 (321)
T ss_pred cccCcccc--------CC-------CCc------------------cHHHH-----------------hccCCCCCceEE
Confidence 77542110 00 000 00000 011122278999
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 171 AINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 171 V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
||||+..+||++|++.|+.||.|.+|++- +.+|||||.|.+.|+|..||. +||+.+.|..++..+-+..
T Consensus 169 ~G~I~~~lte~~mr~~Fs~fG~I~EVRvF----k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 169 VGNIASGLTEDLMRQTFSPFGPIQEVRVF----KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred eCCcCccccHHHHHHhcccCCcceEEEEe----cccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999999999994 458999999999999999998 9999999999998887654
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=8.2e-23 Score=213.44 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=125.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc-cceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI-DRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~-~~~~~ 86 (405)
+...++|||+|||+++||++|+++|++||.|.+|+|+.. .+++++|||||+|.+.++|+.|++.+|...+ .+..+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D----~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD----FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC----CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 344689999999999999999999999999999999443 2588999999999999999999986654333 12111
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
.+.+ ....
T Consensus 131 ~V~~------------------------------------------------------------------------S~~~ 138 (578)
T TIGR01648 131 GVCI------------------------------------------------------------------------SVDN 138 (578)
T ss_pred cccc------------------------------------------------------------------------cccC
Confidence 1000 0015
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEe-c--cCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEee
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGT-VNYIRFC-T--RENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQMFH 239 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~-~--~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~V~~ 239 (405)
++|||+|||+++++++|.+.|++++. +.++.+. . +.++++|||||+|.+.++|..|+. |+. ..+.|+.|.|.+
T Consensus 139 ~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vdw 218 (578)
T TIGR01648 139 CRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDW 218 (578)
T ss_pred ceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEe
Confidence 78999999999999999999999863 4444442 2 345789999999999999999997 643 468899999998
Q ss_pred ccC
Q psy14559 240 STQ 242 (405)
Q Consensus 240 a~~ 242 (405)
+..
T Consensus 219 A~p 221 (578)
T TIGR01648 219 AEP 221 (578)
T ss_pred ecc
Confidence 863
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=3.6e-22 Score=207.65 Aligned_cols=221 Identities=19% Similarity=0.208 Sum_probs=133.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-Cccccc-eeEE
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDR-ALVV 87 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~-~~~v 87 (405)
...+|||+||++.+|+++|+++|+.||+|.+|.+.. +. .+++|||+|.+.++|..|++.+| ..+.++ ..+.
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~-~~------~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~ 167 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFT-KN------NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLK 167 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEe-cC------CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEE
Confidence 345799999999999999999999999999999843 22 24789999999999999997544 444443 3344
Q ss_pred eecCCC-CCc---hHHHHHHHHhccCCCCCCCCCCCCcc-----cc----------cccCC-------CCC----ccc-c
Q psy14559 88 TPYNSG-EIP---DEQRALEIAAQQQGPNSGEPKLPAHV-----TN----------QIEGV-------PPN----QVI-S 136 (405)
Q Consensus 88 v~~~~~-~~~---~e~ka~~l~~~~~g~~~~~~~~~~~~-----~~----------~~~~~-------~~~----~~~-~ 136 (405)
+.+... .+. ...+..... . ...++........ .. ...|. ++. .+. .
T Consensus 168 v~~sk~~~l~v~~~~~~s~dyt-~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 244 (481)
T TIGR01649 168 IEYAKPTRLNVKYNDDDSRDYT-N--PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPP 244 (481)
T ss_pred EEEecCCCceeEecccCCCCCc-C--CCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCc
Confidence 444331 100 000000000 0 0000000000000 00 00000 000 000 0
Q ss_pred cCCcccccCCCCCCCCC-CCCCCCccccccCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEEC
Q psy14559 137 THDPVLVQHGLPQYPPL-PITYDTKKIEEIRRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFS 214 (405)
Q Consensus 137 ~~dp~~~~~~~~~~p~~-~~~~~~~~~~~~~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~ 214 (405)
...+.....+....+.. +............++|||+|||+ .+|+++|+++|+.||.|.+|+++.+ .+|||||+|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~ 321 (481)
T TIGR01649 245 HGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMA 321 (481)
T ss_pred ccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEEC
Confidence 00000000000000000 00000001122367999999998 6999999999999999999999754 4799999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 215 DQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 215 ~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
+.++|..|+. |||..|.|++|+|.+++..
T Consensus 322 ~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 322 DPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 9999999998 9999999999999998754
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=3.9e-22 Score=207.43 Aligned_cols=196 Identities=21% Similarity=0.309 Sum_probs=133.2
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559 9 VKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV 86 (405)
Q Consensus 9 ~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~ 86 (405)
+++++|||+|||+ .+|+++|+++|+.||.|.+|++.. + .+|+|||+|.+.++|..|+. +++..+.++.+.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~-~-------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~ 344 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK-N-------KKETALIEMADPYQAQLALTHLNGVKLFGKPLR 344 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe-C-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 4678999999998 699999999999999999999933 2 26999999999999999996 455555555555
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
+............ .+.++.. .................+... .........
T Consensus 345 v~~s~~~~~~~~~---------------~~~~~~~-~~~~~d~~~~~~~r~~~~~~~--------------~~~~~~~ps 394 (481)
T TIGR01649 345 VCPSKQQNVQPPR---------------EGQLDDG-LTSYKDYSSSRNHRFKKPGSA--------------NKNNIQPPS 394 (481)
T ss_pred EEEcccccccCCC---------------CCcCcCC-CcccccccCCccccCCCcccc--------------cccccCCCC
Confidence 5432221110000 0000000 000000000000000000000 000111226
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCC--eeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee------EEE
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGT--VNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT------LQM 237 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~--I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~------i~V 237 (405)
++|||+|||+++|+++|+++|+.||. |..+++..+.+..+++|||+|.+.++|..|+. |||+.|.|+. |+|
T Consensus 395 ~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv 474 (481)
T TIGR01649 395 ATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKV 474 (481)
T ss_pred cEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEE
Confidence 79999999999999999999999998 88888854434468999999999999999998 9999999985 999
Q ss_pred eeccC
Q psy14559 238 FHSTQ 242 (405)
Q Consensus 238 ~~a~~ 242 (405)
.+++.
T Consensus 475 ~fs~~ 479 (481)
T TIGR01649 475 SFSTS 479 (481)
T ss_pred EeccC
Confidence 99874
No 14
>KOG0131|consensus
Probab=99.89 E-value=4.2e-23 Score=181.34 Aligned_cols=170 Identities=16% Similarity=0.263 Sum_probs=140.9
Q ss_pred ccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc-cccc
Q psy14559 5 TVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV-FIDR 83 (405)
Q Consensus 5 ~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~-~~~~ 83 (405)
..+.....||||+||++.+|++.|++||-+.|+|.++++ |+++ -+..++||||++|.++++|+.|++.+|++ ++++
T Consensus 3 ~~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i-PkDr--v~~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 3 IIERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI-PKDR--VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred ccccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeec-chhh--hcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 345677899999999999999999999999999999999 7654 56789999999999999999999988765 4566
Q ss_pred eeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccc
Q psy14559 84 ALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIE 163 (405)
Q Consensus 84 ~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~ 163 (405)
.+.+-..... .+..
T Consensus 80 pIrv~kas~~------------------------------------------------------------------~~nl 93 (203)
T KOG0131|consen 80 PIRVNKASAH------------------------------------------------------------------QKNL 93 (203)
T ss_pred eeEEEecccc------------------------------------------------------------------cccc
Confidence 5554332110 0000
Q ss_pred ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYI-RFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i-~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
..+.++||+||++.+++..|.+.|+.||.+.+. +++++ +|.++|||||.|.+.+++.+|+. +||+.+..++|.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 114689999999999999999999999988774 44444 67899999999999999999999 999999999999999
Q ss_pred ccCC
Q psy14559 240 STQS 243 (405)
Q Consensus 240 a~~~ 243 (405)
+...
T Consensus 174 a~k~ 177 (203)
T KOG0131|consen 174 AFKK 177 (203)
T ss_pred EEec
Confidence 8644
No 15
>KOG0144|consensus
Probab=99.88 E-value=1.1e-22 Score=198.40 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=132.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~ 86 (405)
..+.-++|||-||.++||.|||++|++||.|.+|.| . +|++++.++|||||.|.+.++|..|+. ++|...+-+...
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl-~--kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL-I--KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEe-e--cccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 345678999999999999999999999999999999 3 356889999999999999999998874 444433221110
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
-+. .+..|..... . ...
T Consensus 108 pvq---------------------------------------------vk~Ad~E~er-----------------~-~~e 124 (510)
T KOG0144|consen 108 PVQ---------------------------------------------VKYADGERER-----------------I-VEE 124 (510)
T ss_pred cee---------------------------------------------ecccchhhhc-----------------c-ccc
Confidence 000 0000100000 0 116
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCc-eeCC--eeEEEeecc
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGT-NLKG--KTLQMFHST 241 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~-~l~g--~~i~V~~a~ 241 (405)
++||||-|+..+||.+++++|++||.|++|.|.++ .+.+||||||+|.+.+.|..|++ |||. .+.| .+|-|+++.
T Consensus 125 ~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 125 RKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred hhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 89999999999999999999999999999999876 78899999999999999999999 9994 5555 488999886
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 205 tq 206 (510)
T KOG0144|consen 205 TQ 206 (510)
T ss_pred cC
Confidence 33
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=1.2e-21 Score=204.77 Aligned_cols=164 Identities=17% Similarity=0.300 Sum_probs=128.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccC-CccccceeE
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTN-TVFIDRALV 86 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n-~~~~~~~~~ 86 (405)
..++|||+|||+++|+++|.++|+.++. +.++.+++... ..++++|||||+|.+.++|..|++ +++ ...+.+..+
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~--~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAA--DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccc--ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 4689999999999999999999999875 66666655432 346789999999999999999985 332 334444455
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
.+.|....... ++ . .....
T Consensus 215 ~VdwA~p~~~~-----------------------------------------d~-------------------~-~~~~~ 233 (578)
T TIGR01648 215 AVDWAEPEEEV-----------------------------------------DE-------------------D-VMAKV 233 (578)
T ss_pred EEEeecccccc-----------------------------------------cc-------------------c-ccccc
Confidence 55554321000 00 0 00014
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKV--GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~--G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
++|||+||++++|+++|+++|++| |.|.+|+++ ++||||+|.+.++|.+|+. |||..|.|+.|+|.+++.
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 689999999999999999999999 999999774 5699999999999999998 999999999999999964
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=2.9e-20 Score=191.99 Aligned_cols=226 Identities=15% Similarity=0.172 Sum_probs=138.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
..++|||+|||+.+|+++|+++|+.||.|.+|.+... ..+++++|||||+|.+.++|..|+..+|+..+++..+.+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d---~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD---PETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG 261 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc---CCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence 3689999999999999999999999999999999442 2457889999999999999999998666666666666666
Q ss_pred cCCCCCchHHHHHHHHhccC-----CC------------------CCCCCCCCCccc--ccccCCCCCcccccCCccccc
Q psy14559 90 YNSGEIPDEQRALEIAAQQQ-----GP------------------NSGEPKLPAHVT--NQIEGVPPNQVISTHDPVLVQ 144 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~-----g~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~ 144 (405)
++......... ........ +. ..+...+++... ..+.............+....
T Consensus 262 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (457)
T TIGR01622 262 YAQDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYA 340 (457)
T ss_pred EccCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccc
Confidence 64421111000 00000000 00 000001110000 000000000000000000000
Q ss_pred CCCCCCCCCCCCCCCccccccCcEEEEeCCCCCCC----------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEEC
Q psy14559 145 HGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVS----------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFS 214 (405)
Q Consensus 145 ~~~~~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~t----------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~ 214 (405)
.........+..+.........+.|+|.||....+ .++|++.|++||.|..|.+.. ....|++||+|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~--~~~~G~~fV~F~ 418 (457)
T TIGR01622 341 TGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT--KNSAGKIYLKFS 418 (457)
T ss_pred ccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC--CCCceeEEEEEC
Confidence 00000000000111111223467899999965544 368999999999999998853 456799999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 215 DQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 215 ~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+.++|.+|++ |||..|+|+.|.+.+..
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999999999 99999999999999875
No 18
>KOG0127|consensus
Probab=99.87 E-value=7.7e-21 Score=190.13 Aligned_cols=223 Identities=18% Similarity=0.263 Sum_probs=146.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
+.-.|.|+|||+.|.+++|+.+|+.||.|.+|.| |+..+ ++..|||||+|....+|..|++.+|+..++++.+++.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I-P~k~d---gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI-PRKKD---GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEc-ccCCC---CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 3567999999999999999999999999999999 76553 4556999999999999999999999999999999999
Q ss_pred cCCCC--Cch----HHHHHHHHhc---------cCCC--CC--CCCCCCCcccccc-------cCCCCCcccccCCcccc
Q psy14559 90 YNSGE--IPD----EQRALEIAAQ---------QQGP--NS--GEPKLPAHVTNQI-------EGVPPNQVISTHDPVLV 143 (405)
Q Consensus 90 ~~~~~--~~~----e~ka~~l~~~---------~~g~--~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~dp~~~ 143 (405)
|+..+ +.+ +...+..... ..+- .. +.......-...+ .+..... ....|...
T Consensus 192 WAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee-~~~vDd~e- 269 (678)
T KOG0127|consen 192 WAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEE-EDDVDDEE- 269 (678)
T ss_pred eecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccc-cccccccc-
Confidence 98652 111 0000000000 0000 00 0000000000000 0000000 00000000
Q ss_pred cCCCCCCCCCCCCCCC--ccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHH
Q psy14559 144 QHGLPQYPPLPITYDT--KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACV 219 (405)
Q Consensus 144 ~~~~~~~p~~~~~~~~--~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A 219 (405)
..+ ..++....... ......++||||.|||+++|+++|.+.|++||+|.++.++.+ ++.++|.|||.|.++.++
T Consensus 270 ~S~--~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~ 347 (678)
T KOG0127|consen 270 SSG--KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAA 347 (678)
T ss_pred ccc--cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHH
Confidence 000 00000000000 111223689999999999999999999999999999998754 889999999999999999
Q ss_pred HHHHHh------CC-ceeCCeeEEEeec
Q psy14559 220 IPALKL------NG-TNLKGKTLQMFHS 240 (405)
Q Consensus 220 ~~Al~l------ng-~~l~g~~i~V~~a 240 (405)
.+||.. .| ..|.||.|+|..+
T Consensus 348 ~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 348 QNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred HHHHHhcCccCCCceEEEeccEEeeeec
Confidence 999973 23 7899999999887
No 19
>KOG0117|consensus
Probab=99.86 E-value=4.2e-21 Score=188.31 Aligned_cols=163 Identities=20% Similarity=0.359 Sum_probs=137.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hcc-CCcccccee
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLT-NTVFIDRAL 85 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~-n~~~~~~~~ 85 (405)
-.+|.|||||||.+.++++|.+.|++.++ |++|.+|+...| +.++||||||+|.+...|..|- +++ ..+.+.+..
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d--k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD--KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc--cccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 35789999999999999999999999999 999999887665 4678999999999999998885 454 456667777
Q ss_pred EEeecCCCCC-chHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccc
Q psy14559 86 VVTPYNSGEI-PDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEE 164 (405)
Q Consensus 86 ~vv~~~~~~~-~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~ 164 (405)
+.|.|++... +++.. . +
T Consensus 240 ~tVdWAep~~e~ded~-------------------------------------------m------------------s- 257 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDT-------------------------------------------M------------------S- 257 (506)
T ss_pred ceeeccCcccCCChhh-------------------------------------------h------------------h-
Confidence 8888887532 11110 0 0
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.-+-|||.||+.++|+|.|+++|++||.|..|+.+ |.||||.|.+.++|.+|++ +||+.|.|..|.|..++
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecc------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 03469999999999999999999999999999775 4599999999999999999 99999999999999997
No 20
>KOG0145|consensus
Probab=99.86 E-value=1.9e-21 Score=179.20 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=135.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
..|.|.-||-++|+|+||.||+..|+|++|+++ +|+.++++-||+||.|.+++||++|+.-.|+.-+...-+.+.++
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLv---RDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLV---RDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeee---eccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 348888899999999999999999999999994 46678999999999999999999999877766554444444332
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559 92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA 171 (405)
Q Consensus 92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV 171 (405)
.. + .. .-...+|||
T Consensus 119 RP--------------S---------------------------------s~-------------------~Ik~aNLYv 132 (360)
T KOG0145|consen 119 RP--------------S---------------------------------SD-------------------SIKDANLYV 132 (360)
T ss_pred cC--------------C---------------------------------hh-------------------hhcccceEE
Confidence 21 0 00 001457999
Q ss_pred eCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe--eEEEeeccCC
Q psy14559 172 INIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGK--TLQMFHSTQS 243 (405)
Q Consensus 172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~--~i~V~~a~~~ 243 (405)
++||..+|..||+.+|++||.|..-+|..| +|.+||.+||-|....+|+.|+. |||+.-.|- +|.|+++++.
T Consensus 133 SGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 133 SGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 999999999999999999999988887554 78899999999999999999999 999887764 8999999754
No 21
>KOG0127|consensus
Probab=99.86 E-value=3.2e-21 Score=192.85 Aligned_cols=188 Identities=16% Similarity=0.253 Sum_probs=139.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
.||||++||+++|.++|.++||.+|+|..|.+. + +..++.++|||||.|.=.+|++.|+...++..++++++-+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vV-t--~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVV-T--NKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEe-c--CCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 899999999999999999999999999999884 3 2345689999999999999999999877766565555554443
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559 92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA 171 (405)
Q Consensus 92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV 171 (405)
......+. . ..+... ++ -.....+... ........-.|.|
T Consensus 83 ~~R~r~e~-------~----~~~e~~-------~v-------eK~~~q~~~~---------------k~~v~~~k~rLII 122 (678)
T KOG0127|consen 83 KKRARSEE-------V----EKGENK-------AV-------EKPIEQKRPT---------------KAKVDLPKWRLII 122 (678)
T ss_pred cccccchh-------c----ccccch-------hh-------hcccccCCcc---------------hhhccCccceEEe
Confidence 32111110 0 000000 00 0000000000 0011111568999
Q ss_pred eCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 172 INIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.||||.|.+.+|+.+|+.||.|..|.|++. .|+-.|||||+|....+|..|+. +||..|.||+|-|.++-.
T Consensus 123 RNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 123 RNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 999999999999999999999999999865 56666999999999999999999 999999999999999843
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=2.5e-20 Score=194.85 Aligned_cols=191 Identities=13% Similarity=0.165 Sum_probs=131.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
...++|||+|||+.+|+++|+++|+.||.|..+.+.. +..++.++|||||+|.+.++|..|+..+|+..+++..+.+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v 369 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK---DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV 369 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3458999999999999999999999999999999843 3346889999999999999999999765555554444444
Q ss_pred ecCC-CCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 89 PYNS-GEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 89 ~~~~-~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
.++. +....... ...+ ..+ . . ...+....... .......+
T Consensus 370 ~~a~~~~~~~~~~------~~~~------~~~---~--------~----~~~~~~~~~~~------------~~~~~~s~ 410 (509)
T TIGR01642 370 QRACVGANQATID------TSNG------MAP---V--------T----LLAKALSQSIL------------QIGGKPTK 410 (509)
T ss_pred EECccCCCCCCcc------cccc------ccc---c--------c----cccccchhhhc------------cccCCCce
Confidence 3332 21100000 0000 000 0 0 00000000000 00011256
Q ss_pred EEEEeCCCCC--C--------CHHHHHHHHhcCCCeeEEEEecc-----CCCCCcEEEEEECCHHHHHHHHH-hCCceeC
Q psy14559 168 TLVAINIEES--V--------SPQELVDFFQKVGTVNYIRFCTR-----ENDTNKYALVEFSDQACVIPALK-LNGTNLK 231 (405)
Q Consensus 168 tvfV~NLp~~--~--------tee~L~~~F~~~G~I~~i~i~~~-----~~~~rg~afV~F~~~e~A~~Al~-lng~~l~ 231 (405)
+|++.|+... + ..++|++.|++||.|..|.|+.+ ++...|+|||+|.+.++|.+|+. |||..|+
T Consensus 411 v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~ 490 (509)
T TIGR01642 411 VVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN 490 (509)
T ss_pred EEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 8999999642 1 23679999999999999999753 23457999999999999999998 9999999
Q ss_pred CeeEEEeecc
Q psy14559 232 GKTLQMFHST 241 (405)
Q Consensus 232 g~~i~V~~a~ 241 (405)
|+.|.|.+..
T Consensus 491 gr~v~~~~~~ 500 (509)
T TIGR01642 491 DRVVVAAFYG 500 (509)
T ss_pred CeEEEEEEeC
Confidence 9999999875
No 23
>KOG0123|consensus
Probab=99.85 E-value=2.8e-20 Score=186.16 Aligned_cols=151 Identities=23% Similarity=0.323 Sum_probs=130.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
.+|||| +++|+..|+++|+.+|+|.++++. +|. + +-|||||.|.++++|+.|+..+|...+.+..+.+.|.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc---~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVC---RDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEe---ecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 479999 999999999999999999999993 344 3 8999999999999999999887776666655555543
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559 92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA 171 (405)
Q Consensus 92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV 171 (405)
.. | ...|||
T Consensus 73 ~r---------------------------------------------d--------------------------~~~~~i 81 (369)
T KOG0123|consen 73 QR---------------------------------------------D--------------------------PSLVFI 81 (369)
T ss_pred cc---------------------------------------------C--------------------------Cceeee
Confidence 21 1 112999
Q ss_pred eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 172 INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.||+++++.++|.++|+.||+|.+|++..+...++|| ||+|++.++|.+|+. +||..+.|++|.|......
T Consensus 82 ~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 82 KNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred cCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 9999999999999999999999999998775559999 999999999999999 9999999999999887644
No 24
>KOG0145|consensus
Probab=99.83 E-value=1.7e-19 Score=166.30 Aligned_cols=222 Identities=13% Similarity=0.165 Sum_probs=143.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc--ccee
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI--DRAL 85 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~--~~~~ 85 (405)
.-....|||++||.++|..+|.++|++||.|..-+|+. |..++.++|.|||.|....+|+.|++..|+..- ....
T Consensus 124 ~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~---dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tep 200 (360)
T KOG0145|consen 124 SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILV---DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEP 200 (360)
T ss_pred hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhh---hcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCC
Confidence 34457899999999999999999999999998888843 335799999999999999999999987665332 2233
Q ss_pred EEeecCCCCCchHHHH-HHHHhccCCCCCCCCCCC-CcccccccCCCCCcccccCCcccccCCCCCCCC--C--CCCCCC
Q psy14559 86 VVTPYNSGEIPDEQRA-LEIAAQQQGPNSGEPKLP-AHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPP--L--PITYDT 159 (405)
Q Consensus 86 ~vv~~~~~~~~~e~ka-~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~--~--~~~~~~ 159 (405)
+.+.+++........+ ++.+-.++. ....+.+- +.....+... ..|......+++..- + ...+..
T Consensus 201 ItVKFannPsq~t~~a~ls~ly~sp~-rr~~Gp~hh~~~r~r~~~~--------~~~~~~~~rfsP~~~d~m~~l~~~~l 271 (360)
T KOG0145|consen 201 ITVKFANNPSQKTNQALLSQLYQSPA-RRYGGPMHHQAQRFRLDNL--------LNPHAAQARFSPMTIDGMSGLAGVNL 271 (360)
T ss_pred eEEEecCCcccccchhhhHHhhcCcc-ccCCCcccchhhhhccccc--------cchhhhhccCCCccccccceeeeecc
Confidence 4555555421111111 111111100 00000000 0000000000 000000000000000 0 000000
Q ss_pred ccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 160 ~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
.......-.|||-||.++++|.-|..+|++||.|..+++++| +++.|||+||++.+.++|..|+. |||..+++|.|.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 011122678999999999999999999999999999999998 57899999999999999999998 999999999999
Q ss_pred Eeecc
Q psy14559 237 MFHST 241 (405)
Q Consensus 237 V~~a~ 241 (405)
|.+..
T Consensus 352 VsFKt 356 (360)
T KOG0145|consen 352 VSFKT 356 (360)
T ss_pred EEEec
Confidence 98865
No 25
>KOG0117|consensus
Probab=99.83 E-value=3.5e-19 Score=174.93 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=130.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~ 86 (405)
++.-|-||||.||.++.|++|.-||++.|+|-+++|.+ +. -++.++|||||.|.+.++|+.|++. +|..+.-+..+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMm-D~--~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMM-DP--FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEee-cc--cCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 45568899999999999999999999999999999954 32 3588999999999999999999964 44433322222
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
-+. .+...
T Consensus 157 gvc------------------------------------------------------------------------~Svan 164 (506)
T KOG0117|consen 157 GVC------------------------------------------------------------------------VSVAN 164 (506)
T ss_pred EEE------------------------------------------------------------------------Eeeec
Confidence 111 01126
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEe---ccCCCCCcEEEEEECCHHHHHHHHH--hCC-ceeCCeeEEEee
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVG-TVNYIRFC---TRENDTNKYALVEFSDQACVIPALK--LNG-TNLKGKTLQMFH 239 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~---~~~~~~rg~afV~F~~~e~A~~Al~--lng-~~l~g~~i~V~~ 239 (405)
+.|||||||.+-++++|.+.|++.+ -|.+|.+. .|..++||||||+|.+...|..|.+ ++| ..+.|..+.|.+
T Consensus 165 ~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdW 244 (506)
T KOG0117|consen 165 CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDW 244 (506)
T ss_pred ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeec
Confidence 7899999999999999999999998 46777664 3466799999999999999999986 777 689999999999
Q ss_pred ccCC
Q psy14559 240 STQS 243 (405)
Q Consensus 240 a~~~ 243 (405)
+...
T Consensus 245 Aep~ 248 (506)
T KOG0117|consen 245 AEPE 248 (506)
T ss_pred cCcc
Confidence 9644
No 26
>KOG0109|consensus
Probab=99.82 E-value=2.9e-20 Score=173.87 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=125.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
-.|||||||..+++.+|+.||++||+|.+|.|+ ++||||..++...++.|++.++...+++..+-+...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 369999999999999999999999999999992 679999999999999999855555555544444321
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559 92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA 171 (405)
Q Consensus 92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV 171 (405)
.. .+....+++|
T Consensus 72 ks--------------------------------------------------------------------Ksk~stkl~v 83 (346)
T KOG0109|consen 72 KS--------------------------------------------------------------------KSKASTKLHV 83 (346)
T ss_pred cc--------------------------------------------------------------------cCCCcccccc
Confidence 10 0112568999
Q ss_pred eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 172 INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
|||.+.|+.+||+..|++||+|..|.|+ ++|+||.|.-.++|..|++ |||+.|.|++++|+.+.+.
T Consensus 84 gNis~tctn~ElRa~fe~ygpviecdiv------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 84 GNISPTCTNQELRAKFEKYGPVIECDIV------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCCCccccCHHHhhhhcccCCceeeeee------cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999999985 5699999999999999998 9999999999999999766
No 27
>KOG0123|consensus
Probab=99.78 E-value=1.5e-18 Score=173.74 Aligned_cols=166 Identities=17% Similarity=0.291 Sum_probs=133.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeEEee
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALVVTP 89 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~vv~ 89 (405)
...|||+||+++++..+|.++|+.||+|.+|++ .++.+ + ++|| ||+|.++++|.+|+.+.| ..+.+..+.+-.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv-~~~~~---g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKV-ATDEN---G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEE-EEcCC---C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 344999999999999999999999999999999 54442 3 7999 999999999999997555 455566666655
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559 90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL 169 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv 169 (405)
+.... ++ .. +... .-..-..+
T Consensus 150 ~~~~~----er------~~-------------------------------~~~~------------------~~~~~t~v 170 (369)
T KOG0123|consen 150 FERKE----ER------EA-------------------------------PLGE------------------YKKRFTNV 170 (369)
T ss_pred ccchh----hh------cc-------------------------------cccc------------------hhhhhhhh
Confidence 43321 10 00 0000 00013479
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
||.|++.+++++.|.++|+.+|.|.++.++.+ .+.+++|+||.|.+.++|..|+. |+|..+.|..+.|..++
T Consensus 171 ~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 171 YVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQ 244 (369)
T ss_pred heeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccc
Confidence 99999999999999999999999999999876 67799999999999999999999 99999999999998876
No 28
>KOG0124|consensus
Probab=99.78 E-value=1.5e-18 Score=166.48 Aligned_cols=174 Identities=13% Similarity=0.221 Sum_probs=136.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
-|.||||.|++...|+.||.-|..||+|++|.+ . -|..+++++|||||+|+-++.|+.|++-+|+.+++++-+.+--
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM-S--WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINM-S--WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeec-c--cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 478999999999999999999999999999987 2 2556899999999999999999999987776666544332210
Q ss_pred CCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEE
Q psy14559 91 NSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLV 170 (405)
Q Consensus 91 ~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvf 170 (405)
.. ++| .. .+..|.-. +.-..-..||
T Consensus 190 Ps------------------------Nmp-----------QA--QpiID~vq------------------eeAk~fnRiY 214 (544)
T KOG0124|consen 190 PS------------------------NMP-----------QA--QPIIDMVQ------------------EEAKKFNRIY 214 (544)
T ss_pred CC------------------------CCc-----------cc--chHHHHHH------------------HHHHhhheEE
Confidence 00 000 00 00001000 0011145799
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 171 AINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 171 V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
|..+-++.++++|+..|+-||+|.+|.+.+. .+..+||+|++|.+..+...|+. ||-..|+|.-|+|..+-.
T Consensus 215 VaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 215 VASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred eeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999999999999999999999999999776 34689999999999999999998 999999999999987743
No 29
>KOG0110|consensus
Probab=99.78 E-value=8.2e-19 Score=180.71 Aligned_cols=173 Identities=16% Similarity=0.244 Sum_probs=136.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecCC
Q psy14559 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNS 92 (405)
Q Consensus 13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~~ 92 (405)
+|||+||++.+|.++|..+|...|.|.++.|....+......+.|||||+|.+.++|+.|++.+++..+++..+.+....
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999994333221234578999999999999999999888666666655554333
Q ss_pred CCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEEe
Q psy14559 93 GEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAI 172 (405)
Q Consensus 93 ~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~ 172 (405)
.. +. + ..+ . .....+...+|+|.
T Consensus 597 ~k-~~----------~-----------------------------------~~g-K----------~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 597 NK-PA----------S-----------------------------------TVG-K----------KKSKKKKGTKILVR 619 (725)
T ss_pred Cc-cc----------c-----------------------------------ccc-c----------ccccccccceeeee
Confidence 10 00 0 000 0 00001114689999
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 173 NIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 173 NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
|||+..+..+++.+|+.||.+.+|+|+.. .+..+|||||+|-++.+|.+|+. |.++.|.||+|-++++++
T Consensus 620 NipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred ccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 99999999999999999999999999866 34579999999999999999998 999999999999999873
No 30
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.78 E-value=1.2e-19 Score=170.70 Aligned_cols=150 Identities=18% Similarity=0.226 Sum_probs=115.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQ 245 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~~ 245 (405)
.++|||+|||+.+|+++|++||+.||+|.+|.|+.+. .++|||||+|.+.++|+.|+.|||..|.|+.|+|..+.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCCC
Confidence 5799999999999999999999999999999998764 357999999999999999999999999999999999875533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceeeee
Q psy14559 246 KPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVRD 325 (405)
Q Consensus 246 ~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~~~ 325 (405)
++........ . ...+.. ...-.+..+.-...|+.+|+.+|+++++|+++++.|.++.++
T Consensus 83 p~~~~~~~~~--~-----------------~~~~~~--~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~a 141 (260)
T PLN03120 83 PPEALAPLSS--N-----------------SPASGA--ESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTA 141 (260)
T ss_pred Cccccccccc--c-----------------cCCCCc--cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHH
Confidence 3322110000 0 000000 000001234556678899999999999999999999999999
Q ss_pred eccccccccccc
Q psy14559 326 VGHVREEDQDHV 337 (405)
Q Consensus 326 ~g~v~~~~~~~~ 337 (405)
...|.++|++-+
T Consensus 142 ~a~v~~~d~k~g 153 (260)
T PLN03120 142 SAKVASLDKKIG 153 (260)
T ss_pred HHHHHhhhhhcC
Confidence 888888887654
No 31
>KOG0146|consensus
Probab=99.77 E-value=6.7e-18 Score=156.36 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=71.7
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.+++|||-.||.+..+.||..+|-.||.|.+.++-.| ++.+|+|+||.|.++.+++.||. |||..|+-++|+|+..+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 4789999999999999999999999999999987443 88999999999999999999999 99999999999998865
No 32
>KOG0147|consensus
Probab=99.77 E-value=9.6e-19 Score=175.98 Aligned_cols=179 Identities=19% Similarity=0.323 Sum_probs=143.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
...+|||+--|+-..++.+|.+||+.+|+|.+|+++.. ..+..++|+|||+|.+.+++..|+.+.+..+++-.++|.
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D---r~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD---RNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc---ccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 34689999999999999999999999999999999653 346789999999999999999999999999998888775
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
.... ++.. ....+..+.+++...| -+.
T Consensus 254 ~sEa------eknr-~a~~s~a~~~k~~~~p----------------------------------------------~~r 280 (549)
T KOG0147|consen 254 LSEA------EKNR-AANASPALQGKGFTGP----------------------------------------------MRR 280 (549)
T ss_pred ccHH------HHHH-HHhccccccccccccc----------------------------------------------hhh
Confidence 4211 1111 1111101100000000 123
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
||||||-+++++++|+..|+.||.|..|.++.| +|.++||+||+|.+.++|.+|+. |||..|.|+.|+|......
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999999999999877 89999999999999999999987 9999999999999876544
No 33
>KOG0148|consensus
Probab=99.76 E-value=6.5e-18 Score=156.81 Aligned_cols=163 Identities=13% Similarity=0.193 Sum_probs=113.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.--|||+.|...++-+.|++.|.+||+|.++++++| ++++|||+||.|-+.++|++||. |||+-|++|.|+-.++.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 346999999999999999999999999999999988 78999999999999999999999 999999999999998853
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHH--------------HHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehh
Q psy14559 243 SIQKPEAKSNEAAQREIEEAMSRV--------------KEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVA 308 (405)
Q Consensus 243 ~~~~p~~~~~~~~~~e~~~~~k~~--------------~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~ 308 (405)
. |.... ..+...++.+... ...++.+...++|... +.+-|-- +-.|++++-|..-.+
T Consensus 142 K---p~e~n--~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~--I~EVRvF--k~qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 K---PSEMN--GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP--IQEVRVF--KDQGYAFVRFETKEA 212 (321)
T ss_pred C---ccccC--CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc--ceEEEEe--cccceEEEEecchhh
Confidence 2 21111 0001111222111 0122222223333221 1111111 223567777888888
Q ss_pred hHHHhhhCCCcceeee--eeccccccccccc
Q psy14559 309 LDLALEIGDDLEVVVR--DVGHVREEDQDHV 337 (405)
Q Consensus 309 ~~~al~~~~~~~~~~~--~~g~v~~~~~~~~ 337 (405)
+.+||..-+..++.+. +|-|-++-+.+-+
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 9999999888888866 9999888444433
No 34
>KOG4205|consensus
Probab=99.75 E-value=8.2e-18 Score=163.49 Aligned_cols=171 Identities=13% Similarity=0.170 Sum_probs=130.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
.+.++|||++|++.+|++.|++.|++||+|.+|.+ +. |..++++++|+||+|++.+.+..++....-.+-++.+-..
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~v-m~--d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVV-MR--DPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPK 80 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEE-ec--cCCCCCcccccceecCCCcchheeecccccccCCccccce
Confidence 37899999999999999999999999999999999 44 4467999999999999999777665332111111111000
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
.+.. . ..... .. .....++
T Consensus 81 ~av~----r--------------------------------------------~~~~~------------~~-~~~~tkk 99 (311)
T KOG4205|consen 81 RAVS----R--------------------------------------------EDQTK------------VG-RHLRTKK 99 (311)
T ss_pred eccC----c--------------------------------------------ccccc------------cc-cccceeE
Confidence 0000 0 00000 00 0002568
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
|||++||.++++++++++|.+||.|.++.++.| +..++||+||+|.+.+++.+++...-+.|.|+.+.|..+...
T Consensus 100 iFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 100 IFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred EEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 999999999999999999999999999988766 567899999999999999999998889999999999988644
No 35
>KOG0144|consensus
Probab=99.73 E-value=2.9e-17 Score=160.77 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-ecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
+..+||.+||.+.-+.+|-..|..||.|.+.++ +.+ ++-++.|+||.|++.-+|..||. |||..+++++++|+.+..
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~ 503 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRD 503 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeec
Confidence 568999999999999999999999999999877 443 78899999999999999999999 999999999999998764
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 504 ~ 504 (510)
T KOG0144|consen 504 R 504 (510)
T ss_pred c
Confidence 3
No 36
>KOG1548|consensus
Probab=99.68 E-value=1.7e-16 Score=151.92 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=126.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTL 235 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i 235 (405)
...|||+|||.++|-+++.++|++||-|.. |+|.++ .|..+|-|.+.|...+++..|++ |++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 556999999999999999999999998865 566544 68899999999999999999999 99999999999
Q ss_pred EEeeccCCC---CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEE--EE---eeeh
Q psy14559 236 QMFHSTQSI---QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIV--LI---VVDV 307 (405)
Q Consensus 236 ~V~~a~~~~---~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~--~~---~~d~ 307 (405)
+|+.|+... ..+..+.. ..... .++....++-.- .+-|+. +. .++.+...-+++ .| .++.
T Consensus 214 rVerAkfq~Kge~~~~~k~k-~k~~~----~kk~~k~q~k~~-dw~pd~-----~~-~sk~r~~~tVi~kn~Ftp~~~~~ 281 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEK-GKCKD----KKKLKKQQQKLL-DWRPDR-----DD-PSKARADRTVILKNMFTPEDFEK 281 (382)
T ss_pred EEehhhhhhccCcCcccccc-ccccc----HHHHHHHHHhhc-ccCCCc-----cc-cccccCCcEEEeeecCCHHHhcc
Confidence 999997541 12222110 00001 111112111100 122221 11 223333333332 11 2566
Q ss_pred hhHHHhhhCCCcceeeeeeccccc-cccccccceEEEEEecCcccccc
Q psy14559 308 ALDLALEIGDDLEVVVRDVGHVRE-EDQDHVVDVLCLVIVRDPHVARD 354 (405)
Q Consensus 308 ~~~~al~~~~~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 354 (405)
..+..+++.+++...|.+||-|+. +.+|+||||+++|.|+++.||.-
T Consensus 282 ~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ 329 (382)
T KOG1548|consen 282 NPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQ 329 (382)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHH
Confidence 668899999999999999999999 99999999999999999999953
No 37
>KOG0105|consensus
Probab=99.68 E-value=7.2e-16 Score=136.09 Aligned_cols=173 Identities=16% Similarity=0.213 Sum_probs=125.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...+++|||+|||.++.+.+|.+||.+||.|.+|.|+-. ...-+||||+|+++.||+.|+..-+..-+++..+-
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r------~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLR 76 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR------PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLR 76 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC------CCCCCeeEEEecCccchhhhhhcccccccCcceEE
Confidence 457899999999999999999999999999999999321 33578999999999999999988888888877777
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
+++..+--+.... .+ ++..++.--. +.....+ | .+..+ ..
T Consensus 77 VEfprggr~s~~~------~G-~y~gggrgGg--------------------g~gg~rg----p-------psrrS--e~ 116 (241)
T KOG0105|consen 77 VEFPRGGRSSSDR------RG-SYSGGGRGGG--------------------GGGGRRG----P-------PSRRS--EY 116 (241)
T ss_pred EEeccCCCccccc------cc-ccCCCCCCCC--------------------CCCcccC----C-------ccccc--ce
Confidence 7766542111000 00 0000000000 0000000 0 11111 56
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~ 231 (405)
.|.|.+||++-+|++|++..-+.|.|....+.+| |.+.|+|...|+++-|+. |+.+.+.
T Consensus 117 RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhcccccc
Confidence 7999999999999999999999999998887544 479999999999999998 8776554
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.67 E-value=4.5e-17 Score=151.14 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=100.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQ 245 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~~ 245 (405)
..||||+||++.+|+++|++||++||+|.+|+|+++ +..++||||+|.++++++.|+.|||..|.|++|.|........
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~~ 83 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYED 83 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccccc
Confidence 679999999999999999999999999999999887 4556899999999999999999999999999999998765433
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceee
Q psy14559 246 KPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVV 323 (405)
Q Consensus 246 ~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~ 323 (405)
++..-..+....+... ....+.....+ .|.. .-.+...--..-++.+|+.+++++.+|.++++.|.++.
T Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~p~~----a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss 152 (243)
T PLN03121 84 EFDFWNRPSWDTEDIS--THNYETNQFAS---TPGE----AVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSA 152 (243)
T ss_pred CcccccCccccccccc--cccccccccCC---Cchh----hHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccH
Confidence 2221110000000000 00000000000 0000 00000111224566788899999999999999999985
No 39
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=6.2e-16 Score=153.97 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=105.1
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
..++|||+|||+++|+++|+++|+.||+|.+|+|+.| +++++|||||+|.+.++|..|+. |||..+.+++|+|.+++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 3789999999999999999999999999999999866 67899999999999999999998 99999999999999875
Q ss_pred CCCCCCC-------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhh
Q psy14559 242 QSIQKPE-------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALE 314 (405)
Q Consensus 242 ~~~~~p~-------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~ 314 (405)
....... .......++++.+.+..+ -+....++.+|+.++++++ ++++.|.....+++||+
T Consensus 186 p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~f----------G~V~~v~i~~d~~tg~~kG--~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 186 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKY----------GQIVQKNILRDKLTGTPRG--VAFVRFNKREEAQEAIS 253 (346)
T ss_pred ccccccccceeEEeCCCCcccHHHHHHHHHhc----------CCEEEEEEeecCCCCccce--EEEEEECCHHHHHHHHH
Confidence 3211100 001122233333333222 1122233445666666664 55555666666799999
Q ss_pred hCCCccee
Q psy14559 315 IGDDLEVV 322 (405)
Q Consensus 315 ~~~~~~~~ 322 (405)
..++..+.
T Consensus 254 ~lng~~~~ 261 (346)
T TIGR01659 254 ALNNVIPE 261 (346)
T ss_pred HhCCCccC
Confidence 87776554
No 40
>KOG0110|consensus
Probab=99.66 E-value=2.3e-15 Score=155.46 Aligned_cols=206 Identities=21% Similarity=0.290 Sum_probs=136.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
.+....++|+|||..+..++|...|..||+|..+-+ |. . .-.++|+|.++.+|..|...++...+..+..+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvll-p~-~-------G~~aiv~fl~p~eAr~Afrklaysr~k~~ply 452 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLL-PP-G-------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLY 452 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeec-Cc-c-------cceeeeeecCccchHHHHHHhchhhhccCccc
Confidence 445688999999999999999999999999999944 51 1 23499999999999999988888877777777
Q ss_pred eecCCCC-CchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCC--CcccccCCcccccCCCCCCCCCCCCCCCccccc
Q psy14559 88 TPYNSGE-IPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPP--NQVISTHDPVLVQHGLPQYPPLPITYDTKKIEE 164 (405)
Q Consensus 88 v~~~~~~-~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~ 164 (405)
.+|.... .+...++..+...... .+..++. .-... .+.....++...... . . ......
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~------~~ee~~~---Er~s~~d~~v~eD~d~te~ss~-------a--~-~a~~~~ 513 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRS------KMEENPS---ERVSAEDGQVEEDKDPTEESSL-------A--R-VAEDEE 513 (725)
T ss_pred cccChhhhccCCcccccccccccc------ccccCcc---eecccccccccccCCccccccc-------h--h-hhhccc
Confidence 7766541 1111111111000000 0000000 00000 000001111010000 0 0 000111
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CC----CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-EN----DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF 238 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~----~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~ 238 (405)
...+|||.||++++|.++|...|...|.|.++.|... .+ .+.|||||+|.+.++|++|++ |+|+.|.|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 1223999999999999999999999999999998543 22 256999999999999999999 99999999999999
Q ss_pred ecc
Q psy14559 239 HST 241 (405)
Q Consensus 239 ~a~ 241 (405)
.+.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 987
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=1.9e-15 Score=132.48 Aligned_cols=77 Identities=17% Similarity=0.343 Sum_probs=72.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ +++++|||||+|.+.++|+.|+. |||..|.|++|+|+++..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 679999999999999999999999999999999765 67899999999999999999998 999999999999999863
No 42
>KOG4206|consensus
Probab=99.63 E-value=2.4e-14 Score=130.77 Aligned_cols=209 Identities=17% Similarity=0.257 Sum_probs=135.8
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHH----HhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCcc
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQT----LFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVF 80 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~----lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~ 80 (405)
.+-.++.||||.||+..+..++|+. ||++||+|.+|.... +.+.+|.|||.|.+.+.|..|+. +.|..|
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~~~As~A~r~l~gfpF 77 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKETEAASAALRALQGFPF 77 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecChhHHHHHHHHhcCCcc
Confidence 3444556999999999999999998 999999999998832 47789999999999999999985 667788
Q ss_pred ccceeEEeecCCCC-CchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCC
Q psy14559 81 IDRALVVTPYNSGE-IPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDT 159 (405)
Q Consensus 81 ~~~~~~vv~~~~~~-~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~ 159 (405)
+|+.+.+-.+.... +-... .+ .+.......+................... ....+.++. . .
T Consensus 78 ygK~mriqyA~s~sdii~~~-------~~-~~v~~~~k~~~~~~~~~~~~~~~ng~~~~---~~~~~~p~p--~---~-- 139 (221)
T KOG4206|consen 78 YGKPMRIQYAKSDSDIIAQA-------PG-TFVEKEKKINGEILARIKQPLDTNGHFYN---MNRMNLPPP--F---L-- 139 (221)
T ss_pred cCchhheecccCccchhhcc-------Cc-eeccccCccccccccccCCcccccccccc---cccccCCCC--c---c--
Confidence 88888765543321 00000 00 00000000000000000000000000000 000111110 0 0
Q ss_pred ccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEEE
Q psy14559 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQM 237 (405)
Q Consensus 160 ~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~V 237 (405)
........++|+.|||.+++.+.|..+|.+|+--..++++. ...+.|||+|.+...+..|.. ++|..+. ...+.|
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~---~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP---PRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc---CCCceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 11111257899999999999999999999999999998853 235799999999999999998 9998877 778888
Q ss_pred eecc
Q psy14559 238 FHST 241 (405)
Q Consensus 238 ~~a~ 241 (405)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 7764
No 43
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.62 E-value=3.2e-15 Score=157.02 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=107.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.| +++++|||||+|.+.++|.+|+. |||..+.|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 578999999999999999999999999999999766 78899999999999999999998 999999999999986542
Q ss_pred CCC-CCCCC-----------------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEe
Q psy14559 243 SIQ-KPEAK-----------------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIV 304 (405)
Q Consensus 243 ~~~-~p~~~-----------------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~ 304 (405)
... .+... ..+....++. .+|+.-.+-...++.+|+..+++++++|+. |.
T Consensus 187 ~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk----------~lFs~FG~I~svrl~~D~~tgksKGfGFVe--Fe 254 (612)
T TIGR01645 187 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIK----------SVFEAFGEIVKCQLARAPTGRGHKGYGFIE--YN 254 (612)
T ss_pred ccccccccccccccccccceEEeecCCCCCCHHHHH----------HHHhhcCCeeEEEEEecCCCCCcCCeEEEE--EC
Confidence 210 00000 0011112222 223322222233455666666666666654 55
Q ss_pred eehhhHHHhhhCCCcceeeee
Q psy14559 305 VDVALDLALEIGDDLEVVVRD 325 (405)
Q Consensus 305 ~d~~~~~al~~~~~~~~~~~~ 325 (405)
....+++||+-.+++++.+++
T Consensus 255 ~~e~A~kAI~amNg~elgGr~ 275 (612)
T TIGR01645 255 NLQSQSEAIASMNLFDLGGQY 275 (612)
T ss_pred CHHHHHHHHHHhCCCeeCCeE
Confidence 666678999999999988774
No 44
>KOG1457|consensus
Probab=99.59 E-value=1.3e-14 Score=131.73 Aligned_cols=213 Identities=14% Similarity=0.161 Sum_probs=126.8
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
..++..+||||.+||.++...+|+.||..|--.+.+.|+.+.+ .....+.+|||.|.+.++|..|+++.|++.+|-..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk--~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSK--GDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccC--CCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 4477789999999999999999999999998889998866654 22335789999999999999999999998877433
Q ss_pred EEe---ecCCCCCchHHHHHHHHhccCCCCCCCC-CCCCcccccccC-CCC-CcccccCCccc-----------------
Q psy14559 86 VVT---PYNSGEIPDEQRALEIAAQQQGPNSGEP-KLPAHVTNQIEG-VPP-NQVISTHDPVL----------------- 142 (405)
Q Consensus 86 ~vv---~~~~~~~~~e~ka~~l~~~~~g~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~dp~~----------------- 142 (405)
... +.+.... .. .....+-.|+.. .+.....+..+- ... .......+|..
T Consensus 107 ~stLhiElAKSNt-K~------kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~ 179 (284)
T KOG1457|consen 107 GSTLHIELAKSNT-KR------KRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTK 179 (284)
T ss_pred CceeEeeehhcCc-cc------ccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccc
Confidence 221 1111100 00 000001111100 000000000000 000 00000000000
Q ss_pred -----ccCCCCCCCCCCCCCCC-c---cccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEE
Q psy14559 143 -----VQHGLPQYPPLPITYDT-K---KIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEF 213 (405)
Q Consensus 143 -----~~~~~~~~p~~~~~~~~-~---~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F 213 (405)
+...+. |+.....+. + ..-....||||.||.++|||++|+.+|+.|--...++|..+.| ...||++|
T Consensus 180 ~~~l~a~~~~~--P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~~vaf~~~ 255 (284)
T KOG1457|consen 180 SEALSAPDSKA--PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--MPVAFADF 255 (284)
T ss_pred hhhhhhhhhcC--CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--cceEeecH
Confidence 000000 000000010 0 0111245899999999999999999999998777777755444 35899999
Q ss_pred CCHHHHHHHHH-hCCceeC
Q psy14559 214 SDQACVIPALK-LNGTNLK 231 (405)
Q Consensus 214 ~~~e~A~~Al~-lng~~l~ 231 (405)
++.+.|..|+. |+|..|.
T Consensus 256 ~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 256 EEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHHHhhcceec
Confidence 99999999998 9887653
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.2e-14 Score=110.26 Aligned_cols=68 Identities=31% Similarity=0.571 Sum_probs=64.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
|||+|||+++|+++|+++|++||.|..+.+..+ .+..+++|||+|.+.++|+.|+. |+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999774 77889999999999999999999 999999999985
No 46
>KOG0147|consensus
Probab=99.56 E-value=1.7e-14 Score=145.56 Aligned_cols=212 Identities=16% Similarity=0.217 Sum_probs=125.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
.++...||||||.+++|+++|+..|+.||.|+.|.+ +. |.-+|.++|||||+|.+.++|.+|+.-+|++.+.+..+.
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l-~~--d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQL-TK--DSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeee-cc--ccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 445555999999999999999999999999999999 43 334799999999999999999999865555655555444
Q ss_pred eecCCCCCchHHHHHHHHhc----cCCCCC--C-------------CCCCCCcccccccCCCCCccc---------ccCC
Q psy14559 88 TPYNSGEIPDEQRALEIAAQ----QQGPNS--G-------------EPKLPAHVTNQIEGVPPNQVI---------STHD 139 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~----~~g~~~--~-------------~~~~~~~~~~~~~~~~~~~~~---------~~~d 139 (405)
|......+.....+...... ..|+.. + +..+++.+.+.+..+...... ...+
T Consensus 352 V~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (549)
T KOG0147|consen 352 VSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVD 431 (549)
T ss_pred EEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccC
Confidence 43222111100000000000 001100 0 011121111111111100000 0111
Q ss_pred cccccCCCCCCCCCCCCCCCccccccCcEEEEe-----------CCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcE
Q psy14559 140 PVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAI-----------NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY 208 (405)
Q Consensus 140 p~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~-----------NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~ 208 (405)
|......+. + ...++.+. |+..++- +++.+-++++|+|..|.+ ...+-|+
T Consensus 432 p~~~~p~~~----i-----------~t~C~lL~nMFdpstete~n~d~eI~-edV~Eec~k~g~v~hi~v---d~ns~g~ 492 (549)
T KOG0147|consen 432 PADASPAFD----I-----------PTQCLLLSNMFDPSTETEPNWDQEIR-EDVIEECGKHGKVCHIFV---DKNSAGC 492 (549)
T ss_pred ccccccccC----C-----------ccHHHHHhhcCCcccccCcchhhHHH-HHHHHHHHhcCCeeEEEE---ccCCCce
Confidence 110000000 0 01122222 3344444 456666699999999988 3344599
Q ss_pred EEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 209 ALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 209 afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.||.|.+.+.|.+|+. |+|..|.|+.|+..+-.
T Consensus 493 VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 493 VYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred EEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 9999999999999998 99999999999988764
No 47
>KOG4211|consensus
Probab=99.53 E-value=2.3e-13 Score=135.83 Aligned_cols=173 Identities=19% Similarity=0.215 Sum_probs=128.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.......|.+.+|||++|++||.+||+.|+ |+++.+ +. .+++.+|-|||+|.+++++++||+.+...+-.+-+-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~-~r----~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIE 79 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI-PR----RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIE 79 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE-ec----cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEE
Confidence 345677899999999999999999999986 577666 33 248889999999999999999999887777666665
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
|.........-. + +...|+ + ....
T Consensus 80 Vf~~~~~e~d~~-------------------~-----------------~~~g~~------------------s--~~~d 103 (510)
T KOG4211|consen 80 VFTAGGAEADWV-------------------M-----------------RPGGPN------------------S--SAND 103 (510)
T ss_pred EEccCCcccccc-------------------c-----------------cCCCCC------------------C--CCCC
Confidence 554322110000 0 000000 0 0114
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNY-IRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
..|=+.+||+.||++||.+||+--=.+.. |.++.+ .+++.|-|||+|++++.|++||.-+...++-|-|.|-.+.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 56888999999999999999996543333 445555 6778999999999999999999988889999999987763
No 48
>KOG4212|consensus
Probab=99.46 E-value=3e-12 Score=125.98 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=137.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc-cceeE
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI-DRALV 86 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~-~~~~~ 86 (405)
..+|.+||+|||+++.+.+|++||. +.|+|+-|.++.. . .++++|+|.|+|+++|.+++|++.+|+... ++.++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~---~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-E---SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-c---CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 3467899999999999999999995 5899999999653 2 488999999999999999999976666544 55555
Q ss_pred EeecCCCCCchHHHHHHHH--hc-cCCCCCC-CCCCCCccccccc---C-----CCCC--------cccccCCc------
Q psy14559 87 VTPYNSGEIPDEQRALEIA--AQ-QQGPNSG-EPKLPAHVTNQIE---G-----VPPN--------QVISTHDP------ 140 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~--~~-~~g~~~~-~~~~~~~~~~~~~---~-----~~~~--------~~~~~~dp------ 140 (405)
+.+..++ +++..-. .. +.++..+ ..+.--..++... + .++. ....+.+.
T Consensus 118 vKEd~d~-----q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~ 192 (608)
T KOG4212|consen 118 VKEDHDE-----QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSS 192 (608)
T ss_pred EeccCch-----hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccch
Confidence 5543332 2111100 00 0011100 0000000000000 0 0000 00000000
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-eccCCCCCcEEEEEECCHHHH
Q psy14559 141 VLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNKYALVEFSDQACV 219 (405)
Q Consensus 141 ~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~~~~~rg~afV~F~~~e~A 219 (405)
+....+.+..-.-+-.. ..+ -...++||+||.+.+..+.|++.|.-.|+|..+.+ +.+.+.++|||.++|..+-.|
T Consensus 193 ~~~lfgl~~~Flr~~h~-f~p--Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpvea 269 (608)
T KOG4212|consen 193 NYNLFGLSASFLRSLHI-FSP--PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEA 269 (608)
T ss_pred hhhcccchhhhhhhccC-CCC--CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHH
Confidence 00000100000000000 011 11568999999999999999999999999999998 566889999999999999999
Q ss_pred HHHHH-hCCceeCCeeEEEeec
Q psy14559 220 IPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 220 ~~Al~-lng~~l~g~~i~V~~a 240 (405)
-.|+. +++.-+..++..+...
T Consensus 270 vqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 270 VQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred HHHHHhhccCCCccccceeecc
Confidence 99998 8888777887766653
No 49
>KOG0125|consensus
Probab=99.45 E-value=3e-13 Score=128.97 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=74.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~ 244 (405)
.+.|+|+|||+...+-||+.+|++||+|.+|.|+-.+..+|||+||+|++.++|++|-. |+|..+.||+|.|..+....
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 57899999999999999999999999999999987766789999999999999999998 99999999999999997654
Q ss_pred C
Q psy14559 245 Q 245 (405)
Q Consensus 245 ~ 245 (405)
.
T Consensus 176 ~ 176 (376)
T KOG0125|consen 176 H 176 (376)
T ss_pred c
Confidence 3
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.45 E-value=5.4e-13 Score=117.01 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|++||+|.+|++. . +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~-~--d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI-V--DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEE-e--cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456789999999999999999999999999999993 3 334688999999999999999999975555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 108 V~~a~ 112 (144)
T PLN03134 108 VNPAN 112 (144)
T ss_pred EEeCC
Confidence 55544
No 51
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=5.3e-13 Score=101.82 Aligned_cols=68 Identities=29% Similarity=0.580 Sum_probs=60.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
|||+|||+++++++|+++|+.||.|..+.+..+ .+.++|+|||+|.+.++|.+|+. ++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 46789999999999999999999 888999999874
No 52
>KOG0106|consensus
Probab=99.43 E-value=3.7e-13 Score=123.89 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=121.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
..+|||+||+.+.+.+|..||..||.|.++.++ .+|+||+|.+..+|.-|++-.|+..+.+-..++.+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 468999999999999999999999999999881 578999999999999999866655554444666655
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559 92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA 171 (405)
Q Consensus 92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV 171 (405)
.+.-... +. ++++.-+ ++.. ....-....+.++|
T Consensus 71 r~~~~~~---------g~---~~~g~r~--------------------------~~~~--------~~~~p~~s~~r~~~ 104 (216)
T KOG0106|consen 71 RGKRRGR---------GR---PRGGDRR--------------------------SDSR--------RYRPPSRTHFRLIV 104 (216)
T ss_pred ccccccc---------CC---CCCCCcc--------------------------chhh--------ccCCcccccceeee
Confidence 4310000 00 0000000 0000 00000112567999
Q ss_pred eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559 172 INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF 238 (405)
Q Consensus 172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~ 238 (405)
-|++..+++.+|.+.|.++|.+....+ ..+++||+|...++|..|+. |+|..+.|+.|.+.
T Consensus 105 ~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 105 RNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 999999999999999999999854433 56899999999999999999 99999999999983
No 53
>KOG0121|consensus
Probab=99.42 E-value=3.7e-13 Score=112.51 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
++|||||||++.++||+|.++|++||+|..|.+-.| +..+-|||||+|-+.++|..|++ +||+.|..++|+|.+..
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 689999999999999999999999999999977433 55688999999999999999999 99999999999998764
No 54
>KOG0126|consensus
Probab=99.41 E-value=4.9e-14 Score=124.29 Aligned_cols=78 Identities=18% Similarity=0.341 Sum_probs=73.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
..-|||||||++.||.+|..+|++||+|++|.+++| +|+++||||+.|+++.+...|+. |||..+.||.|+|.+...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 567999999999999999999999999999999887 89999999999999999999998 999999999999998754
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 115 Y 115 (219)
T KOG0126|consen 115 Y 115 (219)
T ss_pred c
Confidence 4
No 55
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=7.3e-13 Score=131.87 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCH--HHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQ--ACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~--e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
..+||||||++++++++|+..|+.||.|.++.|++.+| ||||||+|.+. .++.+|+. |||..++|+.|+|..++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 56899999999999999999999999999999997777 99999999987 78999998 99999999999999987
No 56
>KOG0131|consensus
Probab=99.39 E-value=2.4e-12 Score=113.81 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=101.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
..|||||||+..++++-|.++|-++|+|.++.++.| +...+||||++|.++|+|+-|++ ||...|-|++|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 679999999999999999999999999999999887 66789999999999999999999 999999999999998862
Q ss_pred CCCCC-CCCC--hHHHHHHHHHHHHHHHHhhhhhhhcc-CcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCC
Q psy14559 243 SIQKP-EAKS--NEAAQREIEEAMSRVKEAQNMISAAI-DPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDD 318 (405)
Q Consensus 243 ~~~~p-~~~~--~~~~~~e~~~~~k~~~~~~~~~s~~~-ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~ 318 (405)
..... -... ......++++.+-+ .+-+.+..-+ .|. ..+|..++.+++.++. ++.+-.+..+||+-.++
T Consensus 89 ~~~nl~vganlfvgNLd~~vDe~~L~--dtFsafG~l~~~P~---i~rd~~tg~~~~~g~i--~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 89 HQKNLDVGANLFVGNLDPEVDEKLLY--DTFSAFGVLISPPK---IMRDPDTGNPKGFGFI--NYASFEASDAAIGSMNG 161 (203)
T ss_pred ccccccccccccccccCcchhHHHHH--HHHHhccccccCCc---ccccccCCCCCCCeEE--echhHHHHHHHHHHhcc
Confidence 21111 0000 00011122222211 1111121111 121 2344455555555544 56666667788887666
Q ss_pred cceeee
Q psy14559 319 LEVVVR 324 (405)
Q Consensus 319 ~~~~~~ 324 (405)
.=+..|
T Consensus 162 q~l~nr 167 (203)
T KOG0131|consen 162 QYLCNR 167 (203)
T ss_pred chhcCC
Confidence 655544
No 57
>KOG0121|consensus
Probab=99.39 E-value=6.8e-13 Score=110.92 Aligned_cols=83 Identities=17% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...++|||||||+..+|||+|.+||+.||+|..|.+ .-++ .+...-|||||+|-+.++|+.|++..|..-++..++.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiM-GLdr--~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIM-GLDR--FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEe-cccc--CCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 456899999999999999999999999999999987 4444 3456799999999999999999999888888888888
Q ss_pred eecCCC
Q psy14559 88 TPYNSG 93 (405)
Q Consensus 88 v~~~~~ 93 (405)
+.|..|
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 888765
No 58
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=3e-12 Score=95.89 Aligned_cols=71 Identities=28% Similarity=0.508 Sum_probs=65.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF 238 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~ 238 (405)
+|||+|||..+++++|+++|++||.|..+.+..+.+.++|+|||+|.+.++|..|+. ++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999876556788999999999999999998 99999999998873
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=1.9e-12 Score=97.99 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=56.3
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559 14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID 82 (405)
Q Consensus 14 LfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~ 82 (405)
|||+|||+++|+++|+++|++||.|..+++... ..+..+++|||+|.+.++|+.|+...++..++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN----SSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE----TTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc----ccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 799999999999999999999999999999543 35778999999999999999999844444443
No 60
>KOG0149|consensus
Probab=99.37 E-value=1e-12 Score=120.53 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
-.+||||||+|.++.+.|+++|++||+|.+..++.| ++++|||+||+|.+.++|.+|++--.-.|+||+-.+..+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 468999999999999999999999999999988766 88999999999999999999999666889999988887754
No 61
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.4e-12 Score=119.82 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
...||||+||++.+|+++|++||++||+|.+|+|... +..+++|||+|.++++++.|+.+++..+.+..+.+.+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D------~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS------GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC------CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 4589999999999999999999999999999999432 3457899999999999999999999999999988888
Q ss_pred cCCC
Q psy14559 90 YNSG 93 (405)
Q Consensus 90 ~~~~ 93 (405)
+.+-
T Consensus 78 ~~~y 81 (243)
T PLN03121 78 WGQY 81 (243)
T ss_pred Cccc
Confidence 7653
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.1e-12 Score=121.88 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=67.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
.++|||+|||+.+|+++|+++|+.||+|++|.| +.++ .++|||||+|.++++|+.|+.+++..+.++.+.+.+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I-~~d~-----~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEM-QSEN-----ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecC-----CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEec
Confidence 589999999999999999999999999999999 4332 2579999999999999999998888888888888775
Q ss_pred CCC
Q psy14559 91 NSG 93 (405)
Q Consensus 91 ~~~ 93 (405)
.+.
T Consensus 78 ~~~ 80 (260)
T PLN03120 78 EDY 80 (260)
T ss_pred cCC
Confidence 543
No 63
>KOG0107|consensus
Probab=99.34 E-value=2.4e-12 Score=113.13 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++||||||+..+++.||...|..||+|.+|-|.. .+.|||||+|+++.+|+.|+. |||..|.|..|+|+.+...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 67899999999999999999999999999997743 567999999999999999999 9999999999999998644
No 64
>KOG0114|consensus
Probab=99.32 E-value=1.1e-11 Score=100.05 Aligned_cols=75 Identities=27% Similarity=0.364 Sum_probs=69.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.+.|||.|||+++|.++..++|++||.|..|++-. +...+|-|||.|++..+|.+|+. |+|..+.++.+.|-+.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~-~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN-TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC-ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 78999999999999999999999999999999933 23468999999999999999999 99999999999999876
No 65
>KOG1190|consensus
Probab=99.32 E-value=5.8e-11 Score=116.28 Aligned_cols=187 Identities=23% Similarity=0.281 Sum_probs=129.8
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559 11 TKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT 88 (405)
Q Consensus 11 ~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv 88 (405)
+.+|.|.||.. .+|++-|..+|+-||+|..|+|+... +-.|.|+|.+...|+.|++. .+-.++|+.+.+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--------kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--------KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--------CcceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 78999999986 58999999999999999999995432 34599999999999999964 5556777777766
Q ss_pred ecCCC--CCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 89 PYNSG--EIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 89 ~~~~~--~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
..... .+|.+.. ...|+...-. ...++.+..|..+.... .+| ..
T Consensus 369 ~SKH~~vqlp~egq------~d~glT~dy~--------------~spLhrfkkpgsKN~~n-i~P-------------ps 414 (492)
T KOG1190|consen 369 LSKHTNVQLPREGQ------EDQGLTKDYG--------------NSPLHRFKKPGSKNYQN-IFP-------------PS 414 (492)
T ss_pred eccCccccCCCCCC------ccccccccCC--------------CCchhhccCcccccccc-cCC-------------ch
Confidence 54432 1222110 0001111000 01112222222211110 001 15
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe-eEEEeeccC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTV-NYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK-TLQMFHSTQ 242 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I-~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~-~i~V~~a~~ 242 (405)
.++...|+|.+++||+|+..|..-|-. .-..+ -++.+.+|++.+.+.|+|..|+. ++.+.+++. .|+|.++++
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkf---f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeee---cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 689999999999999999999988754 44444 34567899999999999999987 999999866 889999875
No 66
>KOG0122|consensus
Probab=99.30 E-value=9.3e-12 Score=114.69 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=73.1
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+..+|-|.||+.++++++|+++|.+||.|..+.|.+| +|.+||||||+|.+.++|.+|+. |||+-+..--|+|++++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4678999999999999999999999999999999766 89999999999999999999999 99999999999999987
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.3e-11 Score=94.06 Aligned_cols=66 Identities=26% Similarity=0.418 Sum_probs=55.4
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 14 LfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
|||+|||+++|+++|+++|+.||.|..+++... + . +..+++|||+|.+.++|..|+..++...+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~-~--~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN-K--D-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES-T--T-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee-e--c-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 799999999999999999999999999999543 2 2 6789999999999999999998887554444
No 68
>KOG0113|consensus
Probab=99.27 E-value=2.4e-11 Score=114.84 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=74.3
Q ss_pred ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
..-+||||+-|+++++|..|+..|+.||+|+.|+|+.+ +|+++|||||+|++.-++..|.+ .+|..|.|+.|-|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34689999999999999999999999999999999877 89999999999999999999998 9999999999999876
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 544
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=8.3e-11 Score=110.30 Aligned_cols=143 Identities=19% Similarity=0.240 Sum_probs=97.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeEEee
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALVVTP 89 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~vv~ 89 (405)
.++|||+|||+.+|+++|+++|..||.|..+.+ ..+ ..++.++|||||+|.+.+++..|+..+++ .+.++.+.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~-~~d--~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL-VRD--RETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEe-eec--cccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 599999999999999999999999999999999 433 25688999999999999999999987774 45555555443
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559 90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL 169 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv 169 (405)
......+... . ... . .. ........ ...........+
T Consensus 192 ~~~~~~~~~~--------~----------~~~--------~--------~~-~~~~~~~~--------~~~~~~~~~~~~ 228 (306)
T COG0724 192 AQPASQPRSE--------L----------SNN--------L--------DA-SFAKKLSR--------GKALLLEKSDNL 228 (306)
T ss_pred cccccccccc--------c----------ccc--------c--------ch-hhhccccc--------ccccccccccee
Confidence 2210000000 0 000 0 00 00000000 000111225689
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCeeEEEEe
Q psy14559 170 VAINIEESVSPQELVDFFQKVGTVNYIRFC 199 (405)
Q Consensus 170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~ 199 (405)
+++|++..++..++...|..+|.+....+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 229 YVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred eccccccccchhHHHHhccccccceeeecc
Confidence 999999999999999999999999777664
No 70
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=2.8e-11 Score=90.15 Aligned_cols=68 Identities=29% Similarity=0.535 Sum_probs=62.4
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559 171 AINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF 238 (405)
Q Consensus 171 V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~ 238 (405)
|+|||..+++++|+++|++||.|..+.+..+ ++.++|+|||+|.+.++|..|+. ++|..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999998655 46789999999999999999998 99999999998873
No 71
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=2.6e-11 Score=113.72 Aligned_cols=76 Identities=28% Similarity=0.524 Sum_probs=72.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|.++|.+||.|..+.+..+ ++.++|||||+|.+.++|..|+. ++|..|.|++|.|..+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999999999999765 68999999999999999999999 99999999999999975
No 72
>KOG1548|consensus
Probab=99.25 E-value=8.6e-10 Score=106.27 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=126.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceE--------EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVE--------DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID 82 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~--------~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~ 82 (405)
+..|||.|||.++|-+++.++|++||-|. .|+||.... |+.+|=|.+.|...+++..|+++++..-+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45699999999999999999999999985 367866543 788999999999999999999877655444
Q ss_pred ceeEEeecCCCCCchHHHHHHHHhccCCCCC-CCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcc
Q psy14559 83 RALVVTPYNSGEIPDEQRALEIAAQQQGPNS-GEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKK 161 (405)
Q Consensus 83 ~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~ 161 (405)
+..+.|.-+.-...++ +.+ +....+..... +.........+|.+-- +...
T Consensus 210 g~~~rVerAkfq~Kge------------~~~~~k~k~k~~~~k-----------k~~k~q~k~~dw~pd~------~~~s 260 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGE------------YDASKKEKGKCKDKK-----------KLKKQQQKLLDWRPDR------DDPS 260 (382)
T ss_pred CcEEEEehhhhhhccC------------cCcccccccccccHH-----------HHHHHHHhhcccCCCc------cccc
Confidence 4444443222100000 000 00000000000 0000001111111100 0111
Q ss_pred ccccCcEEEEeCCCC----CCC-------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCce
Q psy14559 162 IEEIRRTLVAINIEE----SVS-------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTN 229 (405)
Q Consensus 162 ~~~~~rtvfV~NLp~----~~t-------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~ 229 (405)
.....+||.+.|+=. ..+ +++|++-.++||.|..|.+.. ..+.|.+.|.|.+.++|..|++ |+|..
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec--cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 122367999998732 333 356777799999999998853 4578999999999999999999 99999
Q ss_pred eCCeeEEEeec
Q psy14559 230 LKGKTLQMFHS 240 (405)
Q Consensus 230 l~g~~i~V~~a 240 (405)
|.||.|.-+..
T Consensus 339 fdgRql~A~i~ 349 (382)
T KOG1548|consen 339 FDGRQLTASIW 349 (382)
T ss_pred ecceEEEEEEe
Confidence 99999987665
No 73
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=6.7e-11 Score=88.98 Aligned_cols=72 Identities=32% Similarity=0.550 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
+|||+|||+.+++++|+++|+.||.|..+.+..+ .+.++|+|||+|.+.++|..|+. +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999998754 34678999999999999999998 999999999998863
No 74
>KOG0124|consensus
Probab=99.23 E-value=2.6e-11 Score=117.12 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
-+.||||.|.+++.|+.|+..|..||+|++|.+..| +++.+|||||+|+-+|.|+.|++ |||..++||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 368999999999999999999999999999999777 78999999999999999999999 9999999999999854
No 75
>KOG0111|consensus
Probab=99.23 E-value=9e-12 Score=113.02 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=74.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
+||||||+|..++++.-|...|=.||.|.+|.++.| +++.||||||+|...|+|..|+. ||+..|.||.|+|.+++.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 899999999999999999999999999999999877 67899999999999999999998 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 90 ~ 90 (298)
T KOG0111|consen 90 E 90 (298)
T ss_pred c
Confidence 5
No 76
>KOG4207|consensus
Probab=99.23 E-value=1.4e-11 Score=110.97 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=72.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.+|-|-||.+.++.++|+.+|++||.|-+|.|+.| ++.++|||||-|....+|+.|+. |+|..|.|+.|.|+.++-
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 47999999999999999999999999999999987 78899999999999999999999 999999999999998863
No 77
>KOG0120|consensus
Probab=99.17 E-value=9.5e-11 Score=119.82 Aligned_cols=185 Identities=15% Similarity=0.270 Sum_probs=138.2
Q ss_pred ccccCCCCCcEEEEcCCCCCCCHHHHHHHhccC-----------Cc-eEEEEEeeccCCCCCCccccEEEEEecchhhHH
Q psy14559 3 VDTVAPVKTKVVQVANIAPQATRDQMQTLFGYL-----------GK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70 (405)
Q Consensus 3 ~~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~-----------G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~ 70 (405)
++.......+.++|+|+|+.++++.+-.+|..- |+ |..+.+ ...+++||++|.+.++|.
T Consensus 167 ~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------n~~~nfa~ie~~s~~~at 237 (500)
T KOG0120|consen 167 MDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------NLEKNFAFIEFRSISEAT 237 (500)
T ss_pred cCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------cccccceeEEecCCCchh
Confidence 445556778999999999999999999999764 33 677766 346899999999999999
Q ss_pred HHHhccCCccccceeEEeecCCC-CCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCC
Q psy14559 71 ISQHLTNTVFIDRALVVTPYNSG-EIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQ 149 (405)
Q Consensus 71 ~Al~~~n~~~~~~~~~vv~~~~~-~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~ 149 (405)
.++..+...|-+....+....+. ..+.-. ..+. + ....+
T Consensus 238 ~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~------------------------~~~~-----~----------~~~~~- 277 (500)
T KOG0120|consen 238 EAMALDGIIFEGRPLKIRRPHDYQPVPGIT------------------------LSPS-----Q----------LGKVG- 277 (500)
T ss_pred hhhcccchhhCCCCceecccccccCCccch------------------------hhhc-----c----------ccccC-
Confidence 99988877777766655432221 100000 0000 0 00000
Q ss_pred CCCCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hC
Q psy14559 150 YPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LN 226 (405)
Q Consensus 150 ~p~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-ln 226 (405)
.............++||+|||...++.+++++.+.||.+....++.+ +|.++||||.+|.++.-...|+. ||
T Consensus 278 -----~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn 352 (500)
T KOG0120|consen 278 -----LLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN 352 (500)
T ss_pred -----CcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc
Confidence 00011122233678999999999999999999999999999998766 56899999999999999999999 99
Q ss_pred CceeCCeeEEEeecc
Q psy14559 227 GTNLKGKTLQMFHST 241 (405)
Q Consensus 227 g~~l~g~~i~V~~a~ 241 (405)
|..+++++|.|+.+.
T Consensus 353 Gm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 353 GMQLGDKKLVVQRAI 367 (500)
T ss_pred hhhhcCceeEeehhh
Confidence 999999999999884
No 78
>KOG0149|consensus
Probab=99.17 E-value=5.4e-11 Score=109.27 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...+||||||+|.++.+.|+++|++||+|++..++. |..+++++|||||.|++.++|..|++--|-+.-+|...|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvit---d~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNc 85 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVIT---DKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANC 85 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEe---ccCCccccceeeEEeecHHHHHHHhcCCCCccccccccc
Confidence 446799999999999999999999999999998843 557899999999999999999999987766555554443
No 79
>KOG0114|consensus
Probab=99.16 E-value=1.2e-10 Score=94.17 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=64.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
-.++.|||+|||+++|.|++.++|.+||.|..|+| .. +...+|.|||.|++..+|.+|+..+++..++..-.++
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRi-G~-----~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRI-GN-----TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEe-cC-----ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 34689999999999999999999999999999999 22 3456999999999999999999766666665555555
Q ss_pred ecCC
Q psy14559 89 PYNS 92 (405)
Q Consensus 89 ~~~~ 92 (405)
..+.
T Consensus 90 lyyq 93 (124)
T KOG0114|consen 90 LYYQ 93 (124)
T ss_pred EecC
Confidence 5444
No 80
>KOG0108|consensus
Probab=99.16 E-value=6.7e-11 Score=120.12 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=73.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
+.|||||+|+++++++|.++|+..|.|.+++++.| +|+++||||++|.+.+.+..|++ |||..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999866 88999999999999999999999 9999999999999998643
No 81
>KOG0105|consensus
Probab=99.16 E-value=6.5e-11 Score=104.97 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||||||.++.+.+|+++|.+||.|..|.|....+ ...||||+|+++.+|+.|+. -+|..+.|-.|+|+++...
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 68999999999999999999999999999999854333 45799999999999999999 9999999999999998643
No 82
>KOG0122|consensus
Probab=99.14 E-value=1.3e-10 Score=107.24 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...+++|.|.|||.+++|++|++||.+||.|..|.|. . |..+|.++|||||.|.+.++|..|+..+|+.=++.-++.
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyla-r--dK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLA-R--DKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEE-E--ccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 4467899999999999999999999999999999993 3 456899999999999999999999999999988888888
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
++|..
T Consensus 263 vEwsk 267 (270)
T KOG0122|consen 263 VEWSK 267 (270)
T ss_pred EEecC
Confidence 88865
No 83
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.13 E-value=3.1e-10 Score=82.96 Aligned_cols=55 Identities=29% Similarity=0.542 Sum_probs=49.3
Q ss_pred HHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 183 LVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 183 L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
|.++|++||+|..+.+..+. +++|||+|.+.++|..|+. |||..+.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999985433 6899999999999999998 9999999999999875
No 84
>KOG1190|consensus
Probab=99.12 E-value=2.7e-09 Score=104.74 Aligned_cols=217 Identities=18% Similarity=0.251 Sum_probs=128.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~~~ 86 (405)
+..--.+.|.|+-+-+|-|-|..+|+.||.|..|.-+.+.. .=.|.|+|.+.+.|+.|. .+.+.-.+++++.
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-------~FQALvQy~d~~sAq~AK~aLdGqnIyngcCt 219 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-------GFQALVQYTDAVSAQAAKLALDGQNIYNGCCT 219 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-------chhhhhhccchhhHHHHHHhccCCcccCceeE
Confidence 33446688999999999999999999999999986644332 334999999999999985 4555544444443
Q ss_pred -EeecCCC-----CCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCc
Q psy14559 87 -VTPYNSG-----EIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTK 160 (405)
Q Consensus 87 -vv~~~~~-----~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~ 160 (405)
-+.+..- ++-. .|......+.-..+-+.+.+.+.......+.+.....+..-|..... ... .+ .
T Consensus 220 LrId~Sklt~LnvKynn-dkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~------a~~--a~-~ 289 (492)
T KOG1190|consen 220 LRIDFSKLTDLNVKYNN-DKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAG------ANA--AD-G 289 (492)
T ss_pred EEeehhhcccceeeccc-cccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchh------hcc--cc-c
Confidence 3332211 0000 00000000000000000000000000000000000000000000000 000 00 1
Q ss_pred cccc--cCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 161 KIEE--IRRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 161 ~~~~--~~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
+.+. ....|.|.||.. .+|.+-|..+|+-||.|..|+|....+ --|.|+|.+...|+.|+. |+|..+.|++|+
T Consensus 290 ~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lr 366 (492)
T KOG1190|consen 290 KIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLR 366 (492)
T ss_pred ccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEE
Confidence 1111 146788998876 589999999999999999999965432 469999999999999999 999999999999
Q ss_pred EeeccCCC
Q psy14559 237 MFHSTQSI 244 (405)
Q Consensus 237 V~~a~~~~ 244 (405)
|.+++-..
T Consensus 367 vt~SKH~~ 374 (492)
T KOG1190|consen 367 VTLSKHTN 374 (492)
T ss_pred EeeccCcc
Confidence 99998653
No 85
>KOG4454|consensus
Probab=99.11 E-value=2e-11 Score=110.79 Aligned_cols=153 Identities=24% Similarity=0.349 Sum_probs=123.1
Q ss_pred ccccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559 3 VDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID 82 (405)
Q Consensus 3 ~~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~ 82 (405)
|.+.+....+||||+|+...+||+-|.++|-+-|+|..|.| ++.+| ++.+ ||||.|.++-++..|+.++|+.-+.
T Consensus 1 mgaaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~i-p~~~d---~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 1 MGAAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGI-PSGQD---QEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred CCCCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeC-CCCcc---CCCc-eeeeecccccchhhhhhhcccchhc
Confidence 45667788999999999999999999999999999999999 77654 3344 9999999999999999887764332
Q ss_pred ceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccc
Q psy14559 83 RALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKI 162 (405)
Q Consensus 83 ~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~ 162 (405)
..
T Consensus 76 ~~------------------------------------------------------------------------------ 77 (267)
T KOG4454|consen 76 ED------------------------------------------------------------------------------ 77 (267)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cccCcEEEEeC----CCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 163 EEIRRTLVAIN----IEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 163 ~~~~rtvfV~N----Lp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
+..++++.|| |...++++.+...|++.|.+..+++..+ +|.++.++|+++....+.-.++. ..+..+--+++.
T Consensus 78 -e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 -EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred -hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 1144556666 7778899999999999999999999665 67889999999999999889987 677665555555
Q ss_pred Eee
Q psy14559 237 MFH 239 (405)
Q Consensus 237 V~~ 239 (405)
+.-
T Consensus 157 ~gg 159 (267)
T KOG4454|consen 157 IGG 159 (267)
T ss_pred ccc
Confidence 443
No 86
>KOG0113|consensus
Probab=99.08 E-value=2.9e-10 Score=107.56 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
.+.+||||+-|+..++|..|+..|+.||+|+.|+|+. ++.+++++|||||+|.++.+...|-+...+..+++..++|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~---d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVR---DKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEee---ecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 5789999999999999999999999999999999954 4468999999999999999999999888899999999998
Q ss_pred ecCCC
Q psy14559 89 PYNSG 93 (405)
Q Consensus 89 ~~~~~ 93 (405)
...-+
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 87665
No 87
>KOG0107|consensus
Probab=99.05 E-value=4.2e-10 Score=99.17 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
+-.+.||||||+..+|+.||...|+.||+|.+|+| .. ..-|||||+|+++.||+.|...+++..+.+..+-|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWv-Ar-------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWV-AR-------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEE-ee-------cCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 45789999999999999999999999999999999 22 24899999999999999999876665554444444
Q ss_pred ecCCC
Q psy14559 89 PYNSG 93 (405)
Q Consensus 89 ~~~~~ 93 (405)
+...+
T Consensus 80 E~S~G 84 (195)
T KOG0107|consen 80 ELSTG 84 (195)
T ss_pred EeecC
Confidence 44443
No 88
>KOG0130|consensus
Probab=99.04 E-value=3.6e-10 Score=95.51 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=71.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+-.|||.++-+.+|++++.+.|..||+|+.+.+..| +|..+|||+|+|++.+.|+.|+. +||..|.|.+|.|.++-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 568999999999999999999999999999998644 88899999999999999999998 99999999999999875
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.04 E-value=1e-09 Score=81.96 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=55.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
+|||+|||..+++++|+++|+.||+|..+.+... . +.++++|||+|.+.++|+.|+..++...+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-~----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-T----GKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-C----CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 5899999999999999999999999999998432 1 5578999999999999999997666444433
No 90
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=1.4e-09 Score=83.46 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=51.3
Q ss_pred HHHHHHHHh----cCCCeeEEE-Eecc--C--CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q psy14559 180 PQELVDFFQ----KVGTVNYIR-FCTR--E--NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQM 237 (405)
Q Consensus 180 ee~L~~~F~----~~G~I~~i~-i~~~--~--~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V 237 (405)
+++|+++|+ +||.|.++. +..+ + +.++|||||+|.+.++|..|+. |||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999999995 4332 4 7899999999999999999999 9999999999876
No 91
>KOG0109|consensus
Probab=98.98 E-value=8e-10 Score=104.29 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=66.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
-+|||||||..+++.+|+.+|++||+|..|.|+ |.||||..++...++-|+. |+|..|+|..|+|+.+++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999985 5699999999999999999 9999999999999999865
No 92
>smart00360 RRM RNA recognition motif.
Probab=98.97 E-value=2.2e-09 Score=79.71 Aligned_cols=64 Identities=25% Similarity=0.392 Sum_probs=54.0
Q ss_pred EcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559 16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID 82 (405)
Q Consensus 16 VgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~ 82 (405)
|+|||..+++++|+++|+.||.|..+.+.... .++.++++|||+|.+.++|..|+..++...++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~---~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK---DTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC---CCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 68999999999999999999999999994432 25778999999999999999999766644333
No 93
>KOG4206|consensus
Probab=98.96 E-value=1.7e-09 Score=99.18 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHH----HHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVD----FFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~----~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
..||||.||+..+..++|+. +|++||+|.+|... .+.+.||-|||.|.+.+.|-.|+. |+|..|-|++++|++|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 34999999999999999888 99999999999653 466789999999999999999998 9999999999999999
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
++.
T Consensus 88 ~s~ 90 (221)
T KOG4206|consen 88 KSD 90 (221)
T ss_pred cCc
Confidence 755
No 94
>KOG4212|consensus
Probab=98.96 E-value=1.6e-09 Score=107.03 Aligned_cols=76 Identities=30% Similarity=0.425 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQ-KVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~-~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.|.+||.|||+++.|++|+++|. +.|+|.+|.+..| .+++||+|.|+|+++|.+++|++ ||.+.+.||+|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 46799999999999999999997 7899999999666 89999999999999999999999 99999999999997643
No 95
>KOG0125|consensus
Probab=98.95 E-value=1.4e-09 Score=104.07 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=65.9
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
.+....+.|+|+|||+...+.||+.+|.+||+|.+|.|+-.++ .+||||||.|++.+||++|-..+++..+.++.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 3455679999999999999999999999999999999977654 47999999999999999998655555555555
Q ss_pred EEeec
Q psy14559 86 VVTPY 90 (405)
Q Consensus 86 ~vv~~ 90 (405)
+=|..
T Consensus 166 IEVn~ 170 (376)
T KOG0125|consen 166 IEVNN 170 (376)
T ss_pred EEEec
Confidence 54443
No 96
>KOG0126|consensus
Probab=98.95 E-value=2.8e-10 Score=100.73 Aligned_cols=84 Identities=14% Similarity=0.291 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc-cccceeEEe
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV-FIDRALVVT 88 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~-~~~~~~~vv 88 (405)
.+.-|||||||+..||.||-.+||+||+|.+|.++ +|..||+++||||..|++..+...|+.-+|++ ..++.+.|-
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLi---RDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLI---RDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEE---ecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 35679999999999999999999999999999994 46679999999999999999998998655555 455555554
Q ss_pred ecCCCCCc
Q psy14559 89 PYNSGEIP 96 (405)
Q Consensus 89 ~~~~~~~~ 96 (405)
...+-..|
T Consensus 111 Hv~~Yk~p 118 (219)
T KOG0126|consen 111 HVSNYKKP 118 (219)
T ss_pred ecccccCC
Confidence 44443333
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.95 E-value=4.6e-09 Score=78.81 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=56.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
+|+|+|||+.+++++|+++|+.||.|..+.+..... +..+++|||+|.+.++|..|+..++...+++.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~----~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD----TKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 589999999999999999999999999999954322 25689999999999999999977666544433
No 98
>KOG4207|consensus
Probab=98.94 E-value=1.2e-09 Score=98.48 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
...+|.|-||.+.+|.++|+.+|++||.|.+|.| |. |.-+..++|||||.|.+..+|+.|+..+++.++|+..+-|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyI-Pr--dr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYI-PR--DRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceec-cc--ccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3478999999999999999999999999999999 65 44788999999999999999999999888888877766554
Q ss_pred c
Q psy14559 90 Y 90 (405)
Q Consensus 90 ~ 90 (405)
.
T Consensus 89 ~ 89 (256)
T KOG4207|consen 89 M 89 (256)
T ss_pred h
Confidence 3
No 99
>KOG4205|consensus
Probab=98.94 E-value=9.4e-10 Score=107.39 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=72.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.+++|||+|+|+++++.|+++|++||+|.+|.+++| +++++||+||+|.+.+.+..++...-+.|.|+.|.+..+...
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 689999999999999999999999999999999887 778999999999999999999988788999999998888644
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=98.92 E-value=3.5e-09 Score=106.02 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecch--hhHHHHHh-ccCCccccce
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDE--KCVGISQH-LTNTVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~--e~A~~Al~-~~n~~~~~~~ 84 (405)
.....+||||||++.+|+++|+.+|+.||.|.+|.| +.. +| +|||||+|.+. .++..|+. +++..+-++.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEI-pRE----TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEF-VRT----KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-ecc----cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 456689999999999999999999999999999999 422 34 99999999988 56889986 5566667777
Q ss_pred eEEeec
Q psy14559 85 LVVTPY 90 (405)
Q Consensus 85 ~~vv~~ 90 (405)
+.|-.+
T Consensus 80 LKVNKA 85 (759)
T PLN03213 80 LRLEKA 85 (759)
T ss_pred eEEeec
Confidence 666543
No 101
>KOG0120|consensus
Probab=98.90 E-value=8.6e-09 Score=105.65 Aligned_cols=188 Identities=18% Similarity=0.232 Sum_probs=122.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc-ceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID-RALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~-~~~~ 86 (405)
+-....+||+|||...++++++++...||.+....+.. |..++-++||||-+|.+..-...|+...|++.++ ..++
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~---d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVK---DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeec---ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 33457899999999999999999999999999999943 3345789999999999999999999777766555 5555
Q ss_pred EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559 87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR 166 (405)
Q Consensus 87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (405)
+.....+..... .. .. . ..+++.+.+.. ....+..+ .
T Consensus 363 vq~A~~g~~~~~--------~~------~~-~---~~~~~~~i~~~---------~~q~~g~~----------------t 399 (500)
T KOG0120|consen 363 VQRAIVGASNAN--------VN------FN-I---SQSQVPGIPLL---------MTQMAGIP----------------T 399 (500)
T ss_pred eehhhccchhcc--------cc------CC-c---cccccccchhh---------hcccCCCc----------------c
Confidence 544333310000 00 00 0 00001111100 00000000 0
Q ss_pred cEEEEeCC--------CCCCCH--HHHHHHHhcCCCeeEEEEecc-----CCCCCcEEEEEECCHHHHHHHHH-hCCcee
Q psy14559 167 RTLVAINI--------EESVSP--QELVDFFQKVGTVNYIRFCTR-----ENDTNKYALVEFSDQACVIPALK-LNGTNL 230 (405)
Q Consensus 167 rtvfV~NL--------p~~~te--e~L~~~F~~~G~I~~i~i~~~-----~~~~rg~afV~F~~~e~A~~Al~-lng~~l 230 (405)
+.|...|+ ..++++ |+++.-+++||.|.+|.++.+ .....|-.||+|.+.++++.|+. |+|.+|
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 11111111 111222 567777889999999999765 22356778999999999999998 999999
Q ss_pred CCeeEEEeecc
Q psy14559 231 KGKTLQMFHST 241 (405)
Q Consensus 231 ~g~~i~V~~a~ 241 (405)
.||.+...+.-
T Consensus 480 ~nRtVvtsYyd 490 (500)
T KOG0120|consen 480 ANRTVVASYYD 490 (500)
T ss_pred CCcEEEEEecC
Confidence 99999887753
No 102
>KOG0128|consensus
Probab=98.87 E-value=2.8e-10 Score=120.31 Aligned_cols=147 Identities=16% Similarity=0.240 Sum_probs=123.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
..+++||+||++.+.+++|...|+.+|.++.+++. . -+..++.+|+|||.|.+++++..|+.+....+++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~-~--h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV-I--HKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH-H--HhhccccccceeeEeecCCchhhhhhhhhhhhhh-------
Confidence 34689999999999999999999999999988873 1 2235778999999999999998888654332222
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559 90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL 169 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv 169 (405)
+..+
T Consensus 736 ----------------------------------------------------------------------------K~~v 739 (881)
T KOG0128|consen 736 ----------------------------------------------------------------------------KISV 739 (881)
T ss_pred ----------------------------------------------------------------------------hhhh
Confidence 3468
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
||.|.|+..|.++|+.+|+.+|.+++.+++.. .|+++|.|||.|.+..++..+.. .++..+.-+.+.|+.++.
T Consensus 740 ~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 740 AISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred heeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999999999999999999987544 78999999999999999999987 888888888777777653
No 103
>KOG0129|consensus
Probab=98.81 E-value=4.8e-08 Score=98.86 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=105.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeecc-CCCCCCcccc---EEEEEecchhhHHHHHhc----cCCccc
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIA-RDVSIPVQSR---ICYVKFFDEKCVGISQHL----TNTVFI 81 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~-~d~~~~~~~g---~aFV~F~~~e~A~~Al~~----~n~~~~ 81 (405)
=.+.||||+||++++|+.|...|..||.+. |.+ |-. ......-.+| |+|+-|+++.++..-+.. ....|+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdW-P~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDW-PGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eec-CCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 358899999999999999999999999954 445 311 1111122455 999999999998765531 112222
Q ss_pred c--------ceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCC
Q psy14559 82 D--------RALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPL 153 (405)
Q Consensus 82 ~--------~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~ 153 (405)
. ..+.+++|.-. |...-.
T Consensus 336 ~vss~~~k~k~VQIrPW~la---------------------------------------------Ds~fv~--------- 361 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLA---------------------------------------------DSDFVL--------- 361 (520)
T ss_pred EEecCcccccceeEEeeEec---------------------------------------------cchhhh---------
Confidence 1 11111221110 000000
Q ss_pred CCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH
Q psy14559 154 PITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ-KVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK 224 (405)
Q Consensus 154 ~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~-~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~ 224 (405)
+.+..-+.++|||||+||--++.++|..+|+ -||.|..+-|-.| -+.++|-|=|+|.+..+-.+||.
T Consensus 362 ----d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 362 ----DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ----ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 0111112388999999999999999999999 7999999999554 45699999999999999999985
No 104
>KOG0415|consensus
Probab=98.79 E-value=8e-09 Score=99.81 Aligned_cols=78 Identities=14% Similarity=0.286 Sum_probs=73.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.+-|||..|.+-+++++|.-+|+.||+|.+|.+++| +|.+-.||||+|.+.+++++|.- |++..|.+++|+|.++++
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 568999999999999999999999999999999877 88899999999999999999975 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 319 V 319 (479)
T KOG0415|consen 319 V 319 (479)
T ss_pred h
Confidence 4
No 105
>KOG1456|consensus
Probab=98.76 E-value=9.8e-07 Score=86.13 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=132.1
Q ss_pred CCCCCcEEEEcCCC--CCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc--ccc
Q psy14559 7 APVKTKVVQVANIA--PQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV--FID 82 (405)
Q Consensus 7 ~~~~~~tLfVgNLp--~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~--~~~ 82 (405)
+..++++|.++=|. +.+|-+-|+.++..+|+|..|.|+.+ . .-.|.|+|++.+.|+.|.+.+|+. +-+
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n-------gVQAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N-------GVQAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-c-------ceeeEEeechhHHHHHHHhhccccccccc
Confidence 44556666665555 57999999999999999999999443 2 345999999999999999776653 334
Q ss_pred ceeEEeecCCCC----CchHHHHHHHHhccC--CCCCCCCCCC----Cccc----ccccC-CCCCcccccCCcccccCCC
Q psy14559 83 RALVVTPYNSGE----IPDEQRALEIAAQQQ--GPNSGEPKLP----AHVT----NQIEG-VPPNQVISTHDPVLVQHGL 147 (405)
Q Consensus 83 ~~~~vv~~~~~~----~~~e~ka~~l~~~~~--g~~~~~~~~~----~~~~----~~~~~-~~~~~~~~~~dp~~~~~~~ 147 (405)
..-..++++... ...+.-.+....+.. -+.+|....+ +... .+-.| ........ ...
T Consensus 188 CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~--------~~~ 259 (494)
T KOG1456|consen 188 CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGD--------RHG 259 (494)
T ss_pred ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccc--------cCC
Confidence 444445544321 111100011110110 1111111111 0000 00000 00000000 000
Q ss_pred CCCCCCCCCCC---------CccccccCcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHH
Q psy14559 148 PQYPPLPITYD---------TKKIEEIRRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQA 217 (405)
Q Consensus 148 ~~~p~~~~~~~---------~~~~~~~~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e 217 (405)
|+.++++...+ ...-...+.-+.|-+|... ++-+.|..+|-.||.|..|++++. ..|-|.|++.+..
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtamVemgd~~ 336 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAMVEMGDAY 336 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeEEEcCcHH
Confidence 11111111000 0011122667899999985 677899999999999999999642 3567999999999
Q ss_pred HHHHHHH-hCCceeCCeeEEEeeccCCCCC
Q psy14559 218 CVIPALK-LNGTNLKGKTLQMFHSTQSIQK 246 (405)
Q Consensus 218 ~A~~Al~-lng~~l~g~~i~V~~a~~~~~~ 246 (405)
++++|+. ||+..+.|.+|.|..+++....
T Consensus 337 aver~v~hLnn~~lfG~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 337 AVERAVTHLNNIPLFGGKLNVCVSKQNFVS 366 (494)
T ss_pred HHHHHHHHhccCccccceEEEeeccccccc
Confidence 9999999 9999999999999999877443
No 106
>KOG0153|consensus
Probab=98.74 E-value=2.4e-08 Score=96.44 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=68.3
Q ss_pred ccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH--hCCceeCCeeEEEee
Q psy14559 162 IEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK--LNGTNLKGKTLQMFH 239 (405)
Q Consensus 162 ~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~--lng~~l~g~~i~V~~ 239 (405)
.+..-.||||+||...+++.+|+++|.+||+|.++++. ..+++|||+|.+.++|+.|.. +|-..++|.+|+|.+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~----~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL----PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee----cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34446799999999999999999999999999999984 246799999999999999986 888899999999998
Q ss_pred ccC
Q psy14559 240 STQ 242 (405)
Q Consensus 240 a~~ 242 (405)
+..
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 764
No 107
>KOG0112|consensus
Probab=98.70 E-value=1.5e-08 Score=107.95 Aligned_cols=160 Identities=17% Similarity=0.286 Sum_probs=119.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...++|||+|||+..+++.+|+-.|..+|.|.+|.|... ..++...||||.|.+...+-.|...+....++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP----~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~---- 440 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP----HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN---- 440 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC----CCCcccchhhhhhhccccCcccchhhcCCcccc----
Confidence 456899999999999999999999999999999999321 245667899999999885554432221111110
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
|. ....++.+ .....+
T Consensus 441 --------------------------g~-------------------------~r~glG~~-------------kst~tt 456 (975)
T KOG0112|consen 441 --------------------------GT-------------------------HRIGLGQP-------------KSTPTT 456 (975)
T ss_pred --------------------------Cc-------------------------cccccccc-------------ccccce
Confidence 00 00011100 011156
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccCC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQS 243 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~~ 243 (405)
.+|+++|+..+....|...|..||.|..|.+ .+..-||||.|++...++.|+. |-|..|+| ++|.|.++...
T Consensus 457 r~~sgglg~w~p~~~l~r~fd~fGpir~Idy----~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 457 RLQSGGLGPWSPVSRLNREFDRFGPIRIIDY----RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eeccCCCCCCChHHHHHHHhhccCcceeeec----ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 7999999999999999999999999999877 3345699999999999999998 99999986 57888888644
No 108
>KOG1365|consensus
Probab=98.70 E-value=1.1e-07 Score=92.93 Aligned_cols=189 Identities=12% Similarity=0.163 Sum_probs=114.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccC----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYL----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
-.|-.++||+++|+.|+.+||..- |..+.|-+... ..++..|-|||.|..+++|+.||..+...+..+-+-+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r----pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR----PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC----CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 456779999999999999999731 34455555332 2477899999999999999999965543322221111
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
..... ..-++.+...... ++.++. +.+..+..|.. .-+....+.
T Consensus 238 FRSTa---aEvqqvlnr~~s~-pLi~~~------------------------------~sp~~p~~p~~--~~p~~~~kd 281 (508)
T KOG1365|consen 238 FRSTA---AEVQQVLNREVSE-PLIPGL------------------------------TSPLLPGGPAR--LVPPTRSKD 281 (508)
T ss_pred HHHhH---HHHHHHHHhhccc-cccCCC------------------------------CCCCCCCCccc--cCCCCCCCC
Confidence 00000 0001111111000 111100 00000000000 000011156
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCC-CeeE--EEEe-ccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVG-TVNY--IRFC-TRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G-~I~~--i~i~-~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.|-..+||++.+.|+|.+||..|- .|.. +.++ +..|++.|-|||+|.+.+.|..|.. -+.+..++|-|.|-.+
T Consensus 282 cvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 282 CVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred eeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 789999999999999999999986 3433 5553 4478899999999999999999987 5555556888888765
No 109
>KOG0132|consensus
Probab=98.67 E-value=4.6e-08 Score=102.75 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.+|||||+|+..+++.+|..+|+.||+|.+|.+ ..++|+|||++....+|.+|+. |+...+.++.|+|.++...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l----i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL----IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee----ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 579999999999999999999999999999988 4578999999999999999998 9999999999999998644
No 110
>KOG0130|consensus
Probab=98.67 E-value=3.7e-08 Score=83.43 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeEEee
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALVVTP 89 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~vv~ 89 (405)
--.|||+|+.+.+||++|.+.|..||+|+.+++- - |..++..+|||.|+|++.++|+.|+..+|. .+++.. +.+.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN-L--DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~-v~VD 147 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN-L--DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN-VSVD 147 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeec-c--ccccccccceeeeehHhHHHHHHHHHhccchhhhCCc-eeEE
Confidence 3569999999999999999999999999999992 2 335899999999999999999999977664 455544 3444
Q ss_pred c
Q psy14559 90 Y 90 (405)
Q Consensus 90 ~ 90 (405)
|
T Consensus 148 w 148 (170)
T KOG0130|consen 148 W 148 (170)
T ss_pred E
Confidence 4
No 111
>KOG0111|consensus
Probab=98.67 E-value=2.2e-08 Score=91.21 Aligned_cols=80 Identities=15% Similarity=0.295 Sum_probs=67.1
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-Cccccce
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRA 84 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~ 84 (405)
......+|||||+|...+||.-|..-|-+||.|.+|++ |-+. .+++++|||||+|...+||..|+..+| ..++++.
T Consensus 5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqi-PlDy--esqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt 81 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQI-PLDY--ESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT 81 (298)
T ss_pred cccccceeEEeccchHHHHHHHHHhccccccchhhccc-ccch--hcccccceeEEEeeccchhHHHhhcCchhhhccee
Confidence 33557799999999999999999999999999999999 6543 568999999999999999999996555 4566665
Q ss_pred eEEe
Q psy14559 85 LVVT 88 (405)
Q Consensus 85 ~~vv 88 (405)
+.|-
T Consensus 82 irVN 85 (298)
T KOG0111|consen 82 IRVN 85 (298)
T ss_pred EEEe
Confidence 5543
No 112
>KOG4211|consensus
Probab=98.65 E-value=3.3e-07 Score=92.33 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=124.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
....+|-.++||+.||++||.+||+..-.+....+++.+. .+++.|-|||+|++.+.|+.||..++...-.+-+-+-
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~---rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ---RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVF 177 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC---CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEee
Confidence 4678999999999999999999999876666633334433 3668999999999999999999776655555544443
Q ss_pred ecCCCCCchHHHHHHHHhccC-CCC--CCCCCCC--Cccccc-----------------ccC---CCCCccccc-----C
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQ-GPN--SGEPKLP--AHVTNQ-----------------IEG---VPPNQVIST-----H 138 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~-g~~--~~~~~~~--~~~~~~-----------------~~~---~~~~~~~~~-----~ 138 (405)
..... +. +...... +.. |+....+ ....+. ..+ ......... .
T Consensus 178 ~Ss~~----e~---~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs 250 (510)
T KOG4211|consen 178 RSSRA----EV---KRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGS 250 (510)
T ss_pred hhHHH----HH---HhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccc
Confidence 32211 00 0000000 000 1111111 000000 000 000000000 0
Q ss_pred CcccccCCCCCCCCCCCC----CCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-eccCCCCCcEEEEEE
Q psy14559 139 DPVLVQHGLPQYPPLPIT----YDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNKYALVEF 213 (405)
Q Consensus 139 dp~~~~~~~~~~p~~~~~----~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~~~~~rg~afV~F 213 (405)
....+..+.+... -+.. -+..........++..+||+..++.++..+|+..-.+ .+.| +..+++..|-|+|+|
T Consensus 251 ~~~~~~~~~~~~~-g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF 328 (510)
T KOG4211|consen 251 YGGGRDPNYPVSS-GPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEF 328 (510)
T ss_pred cccccccccCCCC-CcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeec
Confidence 0000001111100 0000 0011111112568888999999999999999976444 5555 455788899999999
Q ss_pred CCHHHHHHHHHhCCceeCCeeEEE
Q psy14559 214 SDQACVIPALKLNGTNLKGKTLQM 237 (405)
Q Consensus 214 ~~~e~A~~Al~lng~~l~g~~i~V 237 (405)
.+.++|..|+..++..+..+-|..
T Consensus 329 ~t~edav~Amskd~anm~hrYVEl 352 (510)
T KOG4211|consen 329 ATGEDAVGAMGKDGANMGHRYVEL 352 (510)
T ss_pred ccchhhHhhhccCCcccCcceeee
Confidence 999999999988888888776544
No 113
>KOG4210|consensus
Probab=98.65 E-value=1.4e-08 Score=98.75 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=126.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
+..++.|++++..++.+.+...+|..+|.......... .....++|++++.|+..+.+..|+.+......+.+..-.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~---~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL---EDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhh---ccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 35789999999999999999999999998777666221 124567999999999999999998776654443322111
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
+.... .+ .....+.. ........+
T Consensus 163 dl~~~---------------------------------~~------~~~~n~~~-----------------~~~~~~s~~ 186 (285)
T KOG4210|consen 163 DLNTR---------------------------------RG------LRPKNKLS-----------------RLSSGPSDT 186 (285)
T ss_pred ccccc---------------------------------cc------ccccchhc-----------------ccccCcccc
Confidence 11000 00 00000000 001111345
Q ss_pred EE-EeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 169 LV-AINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 169 vf-V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
+| |+|+++.+++++|+.+|..||.|..++++.+ ++..+||||+.|........++..+...+.++++.+....
T Consensus 187 ~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 187 IFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 66 9999999999999999999999999999755 6779999999999999988887766788999999988765
No 114
>KOG0108|consensus
Probab=98.61 E-value=8.8e-08 Score=97.60 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
++|||||||+.+|+++|.++|+..|.|.++++ .. |..+|+.+||||++|.+.+++..|+..+|...+.++.+-+.+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~-v~--D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL-VY--DRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee-cc--cccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 89999999999999999999999999999999 43 4468999999999999999999999877765554444444444
Q ss_pred C
Q psy14559 92 S 92 (405)
Q Consensus 92 ~ 92 (405)
.
T Consensus 96 ~ 96 (435)
T KOG0108|consen 96 S 96 (435)
T ss_pred c
Confidence 3
No 115
>KOG4661|consensus
Probab=98.59 E-value=1.1e-07 Score=96.83 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=72.9
Q ss_pred cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
....++|||.+|+..+...+|+.+|++||+|.-.+++.. +...++|+||++.+.++|.+||. |+.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 334689999999999999999999999999999998754 33468999999999999999999 999999999999999
Q ss_pred ccCC
Q psy14559 240 STQS 243 (405)
Q Consensus 240 a~~~ 243 (405)
+++.
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 9765
No 116
>KOG1456|consensus
Probab=98.59 E-value=4.9e-06 Score=81.34 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=126.5
Q ss_pred cCCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559 6 VAPVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDR 83 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~ 83 (405)
.+....+++.|-+|.- .+.-+.|.++|-.||.|+.|++..+ ..|.|.|++.+..+++.|+ +++|..+++.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT--------k~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT--------KPGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec--------ccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 3456779999999997 4678889999999999999999432 2578999999999999998 6777777777
Q ss_pred eeEEeecCCCCCchHHHHHHHHhccCCCCCCCC-CCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccc
Q psy14559 84 ALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEP-KLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKI 162 (405)
Q Consensus 84 ~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~ 162 (405)
.+.+.......+ .+... .+| +..-+....+.+.-..++.|..+..+. .
T Consensus 354 kl~v~~SkQ~~v----------------~~~~pflLp-DgSpSfKdys~SkNnRFssp~qAsKNr--------------I 402 (494)
T KOG1456|consen 354 KLNVCVSKQNFV----------------SPVQPFLLP-DGSPSFKDYSGSKNNRFSSPEQASKNR--------------I 402 (494)
T ss_pred eEEEeecccccc----------------ccCCceecC-CCCcchhhcccccccccCChhHhhccc--------------c
Confidence 775544322111 01100 111 000000000111111223333322221 1
Q ss_pred cccCcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEE-eccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe------
Q psy14559 163 EEIRRTLVAINIEESVSPQELVDFFQKVG-TVNYIRF-CTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK------ 233 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i-~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~------ 233 (405)
.-..++|..-|.|..+||+.|.++|..-+ .-.++++ ..++. ....+.++|++.++|..||. +|...+.+.
T Consensus 403 q~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kse-rSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~Pf 481 (494)
T KOG1456|consen 403 QPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSE-RSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPF 481 (494)
T ss_pred cCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccccc-ccccceeeeehHHHHHHHHHHhccccccCCCCCCCe
Confidence 12267899999999999999999998665 3455555 33322 23468999999999999998 998888764
Q ss_pred eEEEeecc
Q psy14559 234 TLQMFHST 241 (405)
Q Consensus 234 ~i~V~~a~ 241 (405)
.++..++.
T Consensus 482 ilKlcfst 489 (494)
T KOG1456|consen 482 ILKLCFST 489 (494)
T ss_pred eeeeeecc
Confidence 35555554
No 117
>KOG4208|consensus
Probab=98.57 E-value=1.8e-07 Score=84.78 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=67.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKV-GTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~-G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
..-+||..+|..+.+.++..+|.++ |.+..+++.+. +|.++|||||+|++.+-|.-|-+ ||++-|.|+.|.+..-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 5569999999999999999999988 78888888443 99999999999999999999998 9999999999887654
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=98.55 E-value=2.6e-07 Score=70.78 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=45.5
Q ss_pred HHHHHHHhc----cCCceEEEE-EeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 25 RDQMQTLFG----YLGKVEDLR-LYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 25 eedLr~lFs----~~G~I~~v~-i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
+++|+++|+ .||.|.++. ++. ++....+.++|+|||+|.+.++|..|++.+|+..++++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~-~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYI-DNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEe-CCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 678999999 999999995 422 222222778999999999999999999766655554443
No 119
>KOG4209|consensus
Probab=98.53 E-value=1.1e-07 Score=89.64 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=73.1
Q ss_pred cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a 240 (405)
+...+.+||+|+++.+|.++++..|+.||.|..+.+..+ .+.++|||||+|.+.+.++.|+.|||..|.|+.|.|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 334678999999999999999999999999998888655 567999999999999999999999999999999999988
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 654
No 120
>KOG4454|consensus
Probab=98.52 E-value=5.1e-08 Score=88.91 Aligned_cols=141 Identities=23% Similarity=0.283 Sum_probs=95.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.+||||+|+...++++-|.++|-+.|+|..+.|+.+ .+..+ ||||.|.++-++..|++ +||..+.++.|.|++-...
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 789999999999999999999999999999999766 44455 99999999999999999 9999999999999876532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhhhhh--hccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcce
Q psy14559 244 IQKPEAKSNEAAQREIEEAMSRVKEAQNMIS--AAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEV 321 (405)
Q Consensus 244 ~~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s--~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~ 321 (405)
.-.|..+. ...++ .....+ +.+++.. ..++.. +|.++.++.+.- --++.=.++++...++.
T Consensus 88 shapld~r---~~~ei---------~~~v~s~a~p~~~~R--~~~~~d-~rnrn~~~~~~q--r~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 88 SHAPLDER---VTEEI---------LYEVFSQAGPIEGVR--IPTDND-GRNRNFGFVTYQ--RLCAVPFALDLYQGLEL 150 (267)
T ss_pred Ccchhhhh---cchhh---------heeeecccCCCCCcc--cccccc-CCccCccchhhh--hhhcCcHHhhhhcccCc
Confidence 11111110 01111 111111 2233332 223322 677777777642 12223456777777776
Q ss_pred eee
Q psy14559 322 VVR 324 (405)
Q Consensus 322 ~~~ 324 (405)
..+
T Consensus 151 ~~~ 153 (267)
T KOG4454|consen 151 FQK 153 (267)
T ss_pred CCC
Confidence 655
No 121
>KOG0132|consensus
Probab=98.46 E-value=2.7e-07 Score=97.17 Aligned_cols=74 Identities=15% Similarity=0.319 Sum_probs=62.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
++|||||.|+.+++|.||.++|+.||+|++|.+++ ++++|||.+...++|.+|+..++.+-+....+.+.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 58999999999999999999999999999999933 489999999999999999965555555555555666
Q ss_pred CCC
Q psy14559 91 NSG 93 (405)
Q Consensus 91 ~~~ 93 (405)
+.+
T Consensus 492 a~g 494 (894)
T KOG0132|consen 492 AVG 494 (894)
T ss_pred ecc
Confidence 654
No 122
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.46 E-value=3.7e-07 Score=66.50 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=39.0
Q ss_pred HHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559 28 MQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV 86 (405)
Q Consensus 28 Lr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~ 86 (405)
|+++|++||+|.++.+.+. .+++|||+|.+.++|..|++ +++..+.++.+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~--------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~ 52 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK--------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLK 52 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT--------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEE
T ss_pred ChHHhCCcccEEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 6899999999999999321 16999999999999999996 455555555443
No 123
>KOG0153|consensus
Probab=98.43 E-value=4.2e-07 Score=88.05 Aligned_cols=74 Identities=12% Similarity=0.282 Sum_probs=64.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccceeEEee
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRALVVTP 89 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~~~vv~ 89 (405)
-.||||+||-..++|.+|++.|.+||+|+++.+.+ .+++|||+|.+.++|+.|. +..|..++++..+-+.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 47899999999999999999999999999999943 2679999999999999986 5677888887777776
Q ss_pred cCCC
Q psy14559 90 YNSG 93 (405)
Q Consensus 90 ~~~~ 93 (405)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 7664
No 124
>KOG0146|consensus
Probab=98.42 E-value=2.7e-07 Score=86.37 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=66.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCc-eeCC--eeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGT-NLKG--KTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~-~l~g--~~i~V~~a 240 (405)
.|+||||-|...-+|||++.+|..||.|.+|.+.+. +|.+||+|||.|.+..+|+.||. |+|. .+-| ..|-|+++
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 689999999999999999999999999999988654 78899999999999999999999 9984 3434 35777776
Q ss_pred c
Q psy14559 241 T 241 (405)
Q Consensus 241 ~ 241 (405)
.
T Consensus 99 D 99 (371)
T KOG0146|consen 99 D 99 (371)
T ss_pred c
Confidence 4
No 125
>KOG0116|consensus
Probab=98.42 E-value=5.4e-07 Score=91.38 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
..+|||+|||++++..+|+++|.+||.|+...|... .++..+||||+|.+.++++.|+.-+-..++|+++.|+-.+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 457999999999999999999999999999988543 24444999999999999999999888899999999987653
No 126
>KOG0415|consensus
Probab=98.41 E-value=3.7e-07 Score=88.48 Aligned_cols=81 Identities=15% Similarity=0.303 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
.++..+|||.-|.|-+|.++|.-+||.||+|.+|.++. |..++.+-.||||+|.+.++.+.|.=.+..++++...+-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR---D~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR---DRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEe---cccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 56789999999999999999999999999999999954 556899999999999999999999744445566555555
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
|.+.
T Consensus 313 VDFS 316 (479)
T KOG0415|consen 313 VDFS 316 (479)
T ss_pred eehh
Confidence 5543
No 127
>KOG0106|consensus
Probab=98.38 E-value=5.1e-07 Score=83.54 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=63.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.+|||+||+.+.+.+|..||..||.|.++.+ ..||+||+|.+.-+|.-|+. +||..|.|-.+.|+++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 5899999999999999999999999999987 35799999999999999998 999999999988888864
No 128
>KOG4307|consensus
Probab=98.37 E-value=2e-06 Score=89.61 Aligned_cols=200 Identities=13% Similarity=0.071 Sum_probs=130.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
..++.+-+++.+.+..+.|++++|... .|..+.|. . +...+-..|.++|+|....++++|++.+++.++++...+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~-~--~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLS-E--NRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTG 384 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchh-h--hhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeec
Confidence 346778889999999999999999752 24444441 1 1122334789999999999999999999999999999888
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCC-CCCCCCCCccccccCc
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYP-PLPITYDTKKIEEIRR 167 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p-~~~~~~~~~~~~~~~r 167 (405)
+..+..... +.+...+.+. + ...+--+. ...-| ....+ ++.+ +.| .....
T Consensus 385 P~g~~~~~~----------a~~~~~~~~~-~--~~~~~hg~------p~~~p-r~~~~-~gq~vp~P--------~~ag~ 435 (944)
T KOG4307|consen 385 PPGNLGRNG----------APPFQAGVPP-P--VIQNNHGR------PIAPP-RAMVR-PGQNVPFP--------GGAGG 435 (944)
T ss_pred CCCcccccc----------CccccccCCC-C--cccccCCC------CCCCc-ccccC-CCCCCCCC--------CCccc
Confidence 865532110 0000000000 0 00000000 00000 00111 1111 111 12267
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNY-IRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.|||..||..+++.++.++|+..-.|++ |.|..- ++.-++-|||.|..++++.+|.. -.-+.++-+.|+|....
T Consensus 436 ~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 436 ALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred eEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 8999999999999999999998877777 766443 66788999999999999999987 55566777788887654
No 129
>KOG0533|consensus
Probab=98.36 E-value=1.5e-06 Score=82.06 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
..+|+|.|||+.+++++|+++|..||.+..+.+-.+ .|.+.|.|-|.|...++|..|++ +||..+.|++|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 468999999999999999999999999888888544 78899999999999999999999 9999999999998877533
No 130
>KOG4660|consensus
Probab=98.35 E-value=5.8e-07 Score=91.85 Aligned_cols=71 Identities=18% Similarity=0.390 Sum_probs=59.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc-ccccee
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV-FIDRAL 85 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~-~~~~~~ 85 (405)
..-..++|+|-|||.++|+++|+.+|+.||+|.+|+. +.-.++++||+|-|..+|+.|++..|.. +.++++
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3556799999999999999999999999999999776 3446899999999999999999766643 444443
No 131
>KOG4660|consensus
Probab=98.34 E-value=4.7e-07 Score=92.50 Aligned_cols=71 Identities=32% Similarity=0.423 Sum_probs=64.9
Q ss_pred cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
+-..++|+|-|||.++++++|..+|+.||+|..|+. +-..+|.+||+|-+.-+|++|++ ||+..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~---t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE---TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc---ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 334789999999999999999999999999999766 45568999999999999999999 999999999888
No 132
>KOG0226|consensus
Probab=98.33 E-value=6.5e-07 Score=83.44 Aligned_cols=168 Identities=14% Similarity=0.171 Sum_probs=118.0
Q ss_pred CCCcEEEEcCCCCCCCHHH-H--HHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 9 VKTKVVQVANIAPQATRDQ-M--QTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeed-L--r~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
+..-..+++|+-..+-.+- | ...|+.+-....-++.... -+.-++++|+.|.....-..+...-++..++...
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~----p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~ 169 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR----PQPIRPEAFESFKASDALLKAETEKEKKKIGKPP 169 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC----CCccCcccccCcchhhhhhhhccccccccccCcc
Confidence 3445677888887776665 4 6778777666665552221 2456889999999888666666554444443322
Q ss_pred EEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccccc
Q psy14559 86 VVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEI 165 (405)
Q Consensus 86 ~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~ 165 (405)
+-. .. + ..-.||++.. | .+.
T Consensus 170 VR~--a~---------------g--------------------------tswedPsl~e--w---------------~~~ 189 (290)
T KOG0226|consen 170 VRL--AA---------------G--------------------------TSWEDPSLAE--W---------------DED 189 (290)
T ss_pred eee--cc---------------c--------------------------cccCCccccc--C---------------ccc
Confidence 100 00 0 0112232211 1 122
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
..+||+|.|.-+++++-|-..|.+|-.-...+++++ +|+++||+||.|.+.+++..|+. |||..++.++|+...+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 568999999999999999999999987777777665 89999999999999999999998 9999999999987655
No 133
>KOG4208|consensus
Probab=98.29 E-value=1.6e-06 Score=78.77 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccC-CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYL-GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV 86 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~-G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~ 86 (405)
.....+||..+|..+-+.++..+|.+| |.+..+++ .++..||.++|||||+|.+++.|+.|.. |+|..+.+..+.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rl---sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRL---SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEe---ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345679999999999999999999998 77888888 2455799999999999999999999875 566666666555
Q ss_pred Ee
Q psy14559 87 VT 88 (405)
Q Consensus 87 vv 88 (405)
|.
T Consensus 124 c~ 125 (214)
T KOG4208|consen 124 CH 125 (214)
T ss_pred eE
Confidence 43
No 134
>KOG0116|consensus
Probab=98.24 E-value=1.7e-06 Score=87.90 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
...+|||+|||+++|+++|+++|..||.|+...|-.+.. -++..+||||+|.+.++++.|++.. ..++++....+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~---~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP---GGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc---CCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEE
Confidence 345699999999999999999999999999988833321 1334499999999999999999887 666666555554
No 135
>KOG0151|consensus
Probab=98.13 E-value=6.4e-06 Score=86.21 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=70.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-----CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-----ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-----~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
..++||+||++.++++.|...|+.||+|.+++++.. ....+.++||-|-+..+|++|+. |+|..+.+..+++.+
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 568999999999999999999999999999998632 23467899999999999999999 999999999999998
Q ss_pred ccCC
Q psy14559 240 STQS 243 (405)
Q Consensus 240 a~~~ 243 (405)
++..
T Consensus 254 gk~V 257 (877)
T KOG0151|consen 254 GKAV 257 (877)
T ss_pred cccc
Confidence 8655
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.13 E-value=1.3e-05 Score=62.82 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCCCHH----HHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 167 RTLVAINIEESVSPQ----ELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 167 rtvfV~NLp~~~tee----~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
..|||.|||.+.+.. -|+.++.-|| +|.+|. .+.|+|-|.+++.|.+|++ |+|..+.|++|.|++.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 469999999998875 4778888897 776662 4679999999999999998 9999999999999997
Q ss_pred c
Q psy14559 241 T 241 (405)
Q Consensus 241 ~ 241 (405)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 137
>KOG1365|consensus
Probab=98.12 E-value=9e-06 Score=79.78 Aligned_cols=285 Identities=16% Similarity=0.181 Sum_probs=169.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
.+-.|-.++||+..++.+|-.+|.-.-...--+.+. ....++.-|.|.|.|.+.+.-+.|++........+.+-+-.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKO---G~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALC---LNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeee---ehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence 445667799999999999999997532211111100 11235667899999999999999987765555444332221
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559 90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL 169 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv 169 (405)
. .+ ++ .+. +++ |.. . ..++.+ ++.. .-.|
T Consensus 136 a-~g----e~-f~~-iag------g~s-~------------------------------e~~~fl-----sk~~--qviv 164 (508)
T KOG1365|consen 136 A-TG----EE-FLK-IAG------GTS-N------------------------------EAAPFL-----SKEN--QVIV 164 (508)
T ss_pred c-Cc----hh-heE-ecC------Ccc-c------------------------------cCCCCC-----Cccc--ceEE
Confidence 1 00 00 000 000 000 0 000000 0001 2346
Q ss_pred EEeCCCCCCCHHHHHHHHhc-C---CCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCC
Q psy14559 170 VAINIEESVSPQELVDFFQK-V---GTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 170 fV~NLp~~~tee~L~~~F~~-~---G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~ 244 (405)
-..+||+++++.++.+||.. | |....|-++.. +|+..|-|||.|..++.|+.||..+...++-|-|.+-++.
T Consensus 165 RmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST--- 241 (508)
T KOG1365|consen 165 RMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST--- 241 (508)
T ss_pred EecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh---
Confidence 67799999999999999973 2 34456655544 7899999999999999999999988777777766654433
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcc-cccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceee
Q psy14559 245 QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGIL-SKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVV 323 (405)
Q Consensus 245 ~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~-~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~ 323 (405)
..|....+++.... .++.+...|...-. ..--.+-++ +.-+-..-+.....++.+|.+..+++..-
T Consensus 242 -----------aaEvqqvlnr~~s~-pLi~~~~sp~~p~~p~~~~p~~~~-kdcvRLRGLPy~AtvEdIL~FlgdFa~~i 308 (508)
T KOG1365|consen 242 -----------AAEVQQVLNREVSE-PLIPGLTSPLLPGGPARLVPPTRS-KDCVRLRGLPYEATVEDILDFLGDFATDI 308 (508)
T ss_pred -----------HHHHHHHHHhhccc-cccCCCCCCCCCCCccccCCCCCC-CCeeEecCCChhhhHHHHHHHHHHHhhhc
Confidence 12333333332211 11111111111100 000111111 11111112357788899999999999988
Q ss_pred eeeccccccccccccceEEEEEecCcccccccCCCCCccee
Q psy14559 324 RDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVH 364 (405)
Q Consensus 324 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (405)
++-|-=--++..-+|-|=|-|-|+.-+.||-.-.-+|-.++
T Consensus 309 ~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 309 RFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred ccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 87665555788889999999999999999987776666554
No 138
>KOG1457|consensus
Probab=98.08 E-value=3e-05 Score=71.25 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=64.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE--eccCC-CCCcEEEEEECCHHHHHHHHH-hCCceeC---CeeEEEe
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF--CTREN-DTNKYALVEFSDQACVIPALK-LNGTNLK---GKTLQMF 238 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i--~~~~~-~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~~i~V~ 238 (405)
-|||||.+||.++...||..+|-.|---+.+.+ ..+.+ ..+-+||++|.+..+|..|+. |||..|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999998854555544 22222 246899999999999999998 9999886 7789999
Q ss_pred eccCC
Q psy14559 239 HSTQS 243 (405)
Q Consensus 239 ~a~~~ 243 (405)
.+++.
T Consensus 114 lAKSN 118 (284)
T KOG1457|consen 114 LAKSN 118 (284)
T ss_pred ehhcC
Confidence 88654
No 139
>KOG4209|consensus
Probab=97.95 E-value=1.1e-05 Score=76.03 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
......+||+|+.+.+|.+++...|+.||.|..+.+ +.++ .++.+++|+||+|.+.+.++.|+.++...+.+.++.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti-~~d~--~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTV-PKDK--FRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceee-eccc--cCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 456789999999999999999999999999998888 5544 3456899999999999999999997777777776666
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
..+..
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 55433
No 140
>KOG4661|consensus
Probab=97.95 E-value=1.5e-05 Score=81.48 Aligned_cols=79 Identities=10% Similarity=0.140 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
.+.|||.+|+..+.-.+|++||++||+|.-.++.. +..++..++|+||.+.+.++|.+++..+....+.+.+|.|..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVT---NaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVT---NARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeee---cCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 47899999999999999999999999999999954 334677899999999999999999965555555556666654
Q ss_pred CC
Q psy14559 91 NS 92 (405)
Q Consensus 91 ~~ 92 (405)
+.
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 43
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.87 E-value=9.4e-05 Score=60.32 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=61.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeC----CeeEEE
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKV--GTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLK----GKTLQM 237 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~--G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~----g~~i~V 237 (405)
.||-+.|||...|.++|.+++... |...-+.++.| ++-+.|||||.|.+++.|..-.+ ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999743 67777777766 56689999999999999998887 9998775 334456
Q ss_pred eecc
Q psy14559 238 FHST 241 (405)
Q Consensus 238 ~~a~ 241 (405)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 142
>KOG0533|consensus
Probab=97.73 E-value=8.7e-05 Score=70.22 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
...+|+|.|||..++++||++||..||.++.+-+ -.++ .+.+.|.|=|.|...+||..|++-.+.+.+++..+.+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~v-hy~~---~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAV-HYDR---AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEee-ccCC---CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 4468999999999999999999999999888888 3333 58889999999999999999997655577776654443
No 143
>KOG0151|consensus
Probab=97.54 E-value=0.00012 Score=76.84 Aligned_cols=74 Identities=14% Similarity=0.248 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccC-CCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIAR-DVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID 82 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~-d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~ 82 (405)
.+.+..|||+||++.+++..|-..|+.||+|.+++| +-.+ +.-....+.+|||.|.+..||+.|++.+++..+-
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKi-mwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKI-MWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceee-ecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 456788999999999999999999999999999998 3322 1113456789999999999999999866654443
No 144
>KOG1995|consensus
Probab=97.49 E-value=9.2e-05 Score=72.49 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=66.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEec--cCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCT--RENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~--~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~ 234 (405)
..||||-+||..+++..|.++|.+||.|.. |.+.. .++.+|+-|.|+|.+...|+.|+. +++..+.|..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 568999999999999999999999998854 22322 277899999999999999999999 9999999999
Q ss_pred EEEeecc
Q psy14559 235 LQMFHST 241 (405)
Q Consensus 235 i~V~~a~ 241 (405)
|+|..+.
T Consensus 146 ikvs~a~ 152 (351)
T KOG1995|consen 146 IKVSLAE 152 (351)
T ss_pred chhhhhh
Confidence 9998775
No 145
>KOG4676|consensus
Probab=97.47 E-value=7e-05 Score=73.83 Aligned_cols=133 Identities=28% Similarity=0.279 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCccccccCcEEEEeCCCCCCCH-HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC
Q psy14559 149 QYPPLPITYDTKKIEEIRRTLVAINIEESVSP-QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNG 227 (405)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~te-e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng 227 (405)
+.+.+.++++..+.....+++||++++..+.. .++..+|-+.+...-|....+...+-.|||+.|.+..++..+|..+|
T Consensus 35 ~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg 114 (479)
T KOG4676|consen 35 PELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDG 114 (479)
T ss_pred ccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCC
Confidence 33445555666677777999999999987654 66777777777666555445555666789999999999999988999
Q ss_pred ceeCCeeE-EEeeccCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccC
Q psy14559 228 TNLKGKTL-QMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIG 282 (405)
Q Consensus 228 ~~l~g~~i-~V~~a~~~~~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~ 282 (405)
..+..+++ .+.+..+...+++..++..+..++++.+ +..+.++++++.+.++..
T Consensus 115 ~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeir-Rt~~v~sl~~~~~l~e~~ 169 (479)
T KOG4676|consen 115 VLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIR-RTREVQSLISAAILPESG 169 (479)
T ss_pred ccCCCCccccccCCccceecCCCCChHhhhhhhHHHH-hhhhhhcchhhhcchhhh
Confidence 99999998 5666666677777777788888888887 777889999888877655
No 146
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.37 E-value=0.00056 Score=49.49 Aligned_cols=52 Identities=10% Similarity=0.239 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHH
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL 223 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al 223 (405)
+.|-|.+.+.+..+. +..+|.+||+|..+.+. ....+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 467889999887755 55588999999999883 34568999999999999985
No 147
>KOG0128|consensus
Probab=97.34 E-value=1.4e-05 Score=85.30 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=105.9
Q ss_pred CCCcEEEEcCCCCCCCHH-HHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 9 VKTKVVQVANIAPQATRD-QMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTee-dLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..-+...+.|+.+...+. ..+..|..+|.|+.|++ +..++... ...++++.+....+++.|.....+-+-.+...
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~-p~~g~k~h--~q~~~~~~~s~~~~~esat~pa~~~~a~~~~a- 644 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNG-PKRGFKAH--EQPQQQKVQSKHGSAESATVPAGGALANRSAA- 644 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccC-cccccccc--ccchhhhhhccccchhhcccccccccCCcccc-
Confidence 344567788888877666 67789999999999999 55332221 12267777777777666653322211111100
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
....++....... . + .........
T Consensus 645 -----------------------------------------------v~~ad~~~~~~~~----k----v-s~n~~R~~~ 668 (881)
T KOG0128|consen 645 -----------------------------------------------VGLADAEEKEENF----K----V-SPNEIRDLI 668 (881)
T ss_pred -----------------------------------------------CCCCCchhhhhcc----C----c-CchHHHHHH
Confidence 0011111111110 0 0 001112245
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe--ccCCCCCcEEEEEECCHHHHHHHHHhCCceeCC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFC--TRENDTNKYALVEFSDQACVIPALKLNGTNLKG 232 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~--~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g 232 (405)
++||+||+..+.+.+|...|+.+|.+..+++. ...++.||+||++|.+++++.+|+.++...+.|
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 89999999999999999999999988887764 447789999999999999999999965555555
No 148
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.33 E-value=0.00045 Score=49.99 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ 73 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al 73 (405)
+.|-|.+.++...+. +...|+.||+|..+.+ + ....+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~-~--------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYV-P--------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEc-C--------CCCcEEEEEECCHHHHHhhC
Confidence 578899999877754 5558999999999988 2 23678999999999999885
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.32 E-value=0.00084 Score=55.68 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=35.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK 224 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~ 224 (405)
..|++.+++..++.++|++.|++||.|..|.+.. .-..|||-|.+.++|+.|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCCEEEEEECCcchHHHHHH
Confidence 3688999999999999999999999999998843 23479999999999999986
No 150
>KOG0226|consensus
Probab=97.31 E-value=0.00024 Score=66.55 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+.....||.|.|...++.+.|-..|.+|-.....+++ +++.+++++||+||.|.+..|+..|++.+|+.+.+...+.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akvi---RdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVI---RDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhcccc---ccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 4456889999999999999999999999888877774 4556899999999999999999999998888888776654
Q ss_pred e
Q psy14559 88 T 88 (405)
Q Consensus 88 v 88 (405)
.
T Consensus 264 l 264 (290)
T KOG0226|consen 264 L 264 (290)
T ss_pred h
Confidence 4
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.30 E-value=0.00059 Score=66.27 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=62.0
Q ss_pred CcEEEEeCCCCCCCHHH------HHHHHhcCCCeeEEEEeccC---CCCCc-E-EEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559 166 RRTLVAINIEESVSPQE------LVDFFQKVGTVNYIRFCTRE---NDTNK-Y-ALVEFSDQACVIPALK-LNGTNLKGK 233 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~------L~~~F~~~G~I~~i~i~~~~---~~~rg-~-afV~F~~~e~A~~Al~-lng~~l~g~ 233 (405)
+.-+||-+||+.+..|+ -.++|++||+|..|.+..++ +...+ + .||+|.+.++|.+|+. .+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 55799999999988777 35899999999999885442 11122 2 3999999999999998 999999999
Q ss_pred eEEEeecc
Q psy14559 234 TLQMFHST 241 (405)
Q Consensus 234 ~i~V~~a~ 241 (405)
.|+-.+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99988764
No 152
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.26 E-value=0.0015 Score=53.66 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=53.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe-cc--------CCCCCcEEEEEECCHHHHHHHHHhCCceeCCe-eE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TR--------ENDTNKYALVEFSDQACVIPALKLNGTNLKGK-TL 235 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~-~~--------~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~-~i 235 (405)
.+.|.|-++|+.. ...+.+.|++||.|.+..-. ++ ......+-.|+|.++.+|.+||..||..+.|. .+
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 5679999999984 46677999999999887511 10 11245689999999999999999999999986 45
Q ss_pred EEeecc
Q psy14559 236 QMFHST 241 (405)
Q Consensus 236 ~V~~a~ 241 (405)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 566653
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.19 E-value=0.00087 Score=55.58 Aligned_cols=54 Identities=13% Similarity=0.305 Sum_probs=35.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH 74 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~ 74 (405)
+.|+|.|++..++.++|+++|+.||.|.-|.+ . ....-|||.|.++++|+.|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~--------~G~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-S--------RGDTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE-----------TT-SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-c--------CCCCEEEEEECCcchHHHHHH
Confidence 57999999999999999999999999988877 1 124469999999999998875
No 154
>KOG2193|consensus
Probab=97.18 E-value=3.6e-05 Score=76.46 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=104.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCc--eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeEEe
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGK--VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALVVT 88 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~--I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~vv 88 (405)
..+|++||++.++..+|..+|...-. -..+- ...||+||.+.+..-|..|+..+++ ..+.++..-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-----------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-----------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-----------eecceeeccCCchhhhhhhHHhhchhhhhcCceeec
Confidence 36899999999999999999986411 11111 1378999999999988888754432 2222211111
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
+.. + .. ....|+
T Consensus 71 ~~s-----------------------------------------------------------------v-~k--kqrsrk 82 (584)
T KOG2193|consen 71 EHS-----------------------------------------------------------------V-PK--KQRSRK 82 (584)
T ss_pred cch-----------------------------------------------------------------h-hH--HHHhhh
Confidence 100 0 00 011466
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
+-+.|+|+...++-|..+..+||.+..|..+.. ....-..-|+|...+.+..|+. |||..+....++|.+-
T Consensus 83 ~Qirnippql~wevld~Ll~qyg~ve~~eqvnt-~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 83 IQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT-DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc-chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 889999999999999999999999999976332 1112234578999999999998 9999999888888764
No 155
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.91 E-value=0.0028 Score=51.71 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc--CCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGY--LGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ 73 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~--~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al 73 (405)
.||.|+|||...|.++|.+++.. .|...=+-+ |. |..+..+.|||||.|.++++|..-.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YL-Pi--Df~~~~N~GYAFVNf~~~~~~~~F~ 62 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYL-PI--DFKNKCNLGYAFVNFTSPQAAIRFY 62 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEe-ee--eccCCCceEEEEEEcCCHHHHHHHH
Confidence 48999999999999999998865 365555555 54 3456778999999999999877554
No 156
>KOG4307|consensus
Probab=96.91 E-value=0.0027 Score=66.92 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=62.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEE-eccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTV-NYIRF-CTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF 238 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I-~~i~i-~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~ 238 (405)
-|-|.|+|++++-+|+.+||..|-.+ .+|.+ ..|.|...|-|-|-|++.++|..|.. |+++.|..|.+++.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 67899999999999999999999755 34555 35688999999999999999999988 99999999988875
No 157
>KOG4210|consensus
Probab=96.80 E-value=0.00088 Score=65.33 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCCcEEE-EcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQ-VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLf-VgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.....++| |+||+.++|+++|+..|..+|.|..+++ +... .++.++++|||.|.+..+...++.. ....+++...
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~-~~~~--~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRL-PTDE--ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPL 256 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeecc-CCCC--CccchhhhhhhhhhhchhHHHHhhc-ccCcccCccc
Confidence 34456666 9999999999999999999999999999 6543 5788999999999999999988876 5555554433
No 158
>KOG1855|consensus
Probab=96.56 E-value=0.0021 Score=64.44 Aligned_cols=72 Identities=14% Similarity=0.286 Sum_probs=56.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeec---cCCCCCC-------ccccEEEEEecchhhHHHHHhccCC
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPI---ARDVSIP-------VQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~---~~d~~~~-------~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
-+.+||.+-|||.+-.-+.|.++|+.||.|.+|+|..- ..+.+-. ..+-+|+|+|...+.|.+|-+++|.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46799999999999999999999999999999999432 1111111 1256899999999999999988765
Q ss_pred cc
Q psy14559 79 VF 80 (405)
Q Consensus 79 ~~ 80 (405)
.-
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 159
>KOG1855|consensus
Probab=96.55 E-value=0.0035 Score=62.84 Aligned_cols=62 Identities=32% Similarity=0.423 Sum_probs=53.0
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-------CCC--------CCcEEEEEECCHHHHHHHHHhC
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-------END--------TNKYALVEFSDQACVIPALKLN 226 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-------~~~--------~rg~afV~F~~~e~A~~Al~ln 226 (405)
..+||.+.|||.+-.-+-|.++|+.||.|..|+|+.. .+. .+-+|+|+|...+.|.+|.++.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4799999999999999999999999999999999643 111 2456999999999999999844
No 160
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.52 E-value=0.012 Score=51.39 Aligned_cols=54 Identities=33% Similarity=0.550 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 182 ELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 182 ~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
+|.+.|..||++.-+|+.. +--.|+|.+-++|.+|+.++|..+.|+.|+|....
T Consensus 52 ~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 7888999999999998864 24789999999999999999999999999998854
No 161
>KOG3152|consensus
Probab=96.40 E-value=0.0021 Score=60.49 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=56.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec-c-C--------CCCCc----EEEEEECCHHHHHHHHH-hCCceeC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT-R-E--------NDTNK----YALVEFSDQACVIPALK-LNGTNLK 231 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~-~-~--------~~~rg----~afV~F~~~e~A~~Al~-lng~~l~ 231 (405)
.-||++|||+.+...-|+++|++||.|-.|.+.. + . |.+++ -|.|+|.+...|..... |||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 4799999999999999999999999999999842 2 1 22222 26799999999988776 9999999
Q ss_pred Cee
Q psy14559 232 GKT 234 (405)
Q Consensus 232 g~~ 234 (405)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 985
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.30 E-value=0.016 Score=47.58 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCC----CCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARD----VSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d----~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
..+-|.|=+.|+. .-..+-+.|++||+|.+..-..+... .......++-.|.|.++.+|..||..++..+-+..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3455777788888 45678889999999988751000000 001234779999999999999999999999888888
Q ss_pred EEeecC
Q psy14559 86 VVTPYN 91 (405)
Q Consensus 86 ~vv~~~ 91 (405)
+.+++.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 877755
No 163
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.24 E-value=0.018 Score=45.43 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=41.5
Q ss_pred cEEEEcCCCCCCCHHHHH----HHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCcccccee
Q psy14559 12 KVVQVANIAPQATRDQMQ----TLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRAL 85 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr----~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~ 85 (405)
..|+|.|||.+.....|+ .|+..||- |.+| +.+.|+|.|.+.+.|..|++.+ +...++..+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------------eCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 469999999998877654 57778865 4443 2567999999999999999755 555666666
Q ss_pred EEee
Q psy14559 86 VVTP 89 (405)
Q Consensus 86 ~vv~ 89 (405)
.+..
T Consensus 70 ~v~~ 73 (90)
T PF11608_consen 70 SVSF 73 (90)
T ss_dssp EEES
T ss_pred EEEE
Confidence 5544
No 164
>KOG1996|consensus
Probab=96.09 E-value=0.015 Score=55.84 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCCeeEEEEeccCCC---CCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 181 QELVDFFQKVGTVNYIRFCTREND---TNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 181 e~L~~~F~~~G~I~~i~i~~~~~~---~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+++++-+++||.|..|.|-..++. ..---||+|...++|.+|+. |||..|+||.++-.+.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 578888999999999877443332 23347999999999999998 99999999988876654
No 165
>KOG3152|consensus
Probab=96.09 E-value=0.0034 Score=59.10 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCC---------CCCCccccEEEEEecchhhHHHHHhccCCcc
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARD---------VSIPVQSRICYVKFFDEKCVGISQHLTNTVF 80 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d---------~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~ 80 (405)
.+.+||++|||+.+....||++|+.||+|-.|-+-|.+.. ......-.-|+|+|.+...|...-.++|+.-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999998655431 1112223347899999999887654444333
Q ss_pred c
Q psy14559 81 I 81 (405)
Q Consensus 81 ~ 81 (405)
+
T Consensus 153 I 153 (278)
T KOG3152|consen 153 I 153 (278)
T ss_pred c
Confidence 3
No 166
>KOG4849|consensus
Probab=96.04 E-value=0.0062 Score=59.57 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=61.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEe--ccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFC--TRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~--~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
+-.+|||||-|.+|+++|.+.....| .+.++++- +..|++||||+|...+..++++-++ |--..|.|..=.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 44799999999999999999999888 55666653 3378999999999999999999988 8778888876555443
No 167
>KOG2314|consensus
Probab=95.84 E-value=0.012 Score=61.01 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=59.9
Q ss_pred CcEEEEeCCCCCCCH------HHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEE
Q psy14559 166 RRTLVAINIEESVSP------QELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~~te------e~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~ 236 (405)
...|+|.|+|---.. .-|..+|+++|+|....++-+ .|..+||.|++|.+..+|+.|++ |||+.|. .++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 467899999873222 346789999999999998744 66799999999999999999999 9998887 44556
Q ss_pred Eeec
Q psy14559 237 MFHS 240 (405)
Q Consensus 237 V~~a 240 (405)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 5544
No 168
>KOG2202|consensus
Probab=95.82 E-value=0.004 Score=58.67 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=50.9
Q ss_pred HHHHHHHh-cCCCeeEEEEeccC-CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 181 QELVDFFQ-KVGTVNYIRFCTRE-NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 181 e~L~~~F~-~~G~I~~i~i~~~~-~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+++...|+ +||+|..+.+...- ..-.|=+||.|...++|++|+. |||..+.|++|....+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45556666 89999999886552 3457889999999999999999 99999999999988764
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.25 E-value=0.07 Score=42.11 Aligned_cols=58 Identities=12% Similarity=0.271 Sum_probs=42.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN 77 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n 77 (405)
|......+|+ .|......||.++|+.||.|.=-.| .|. -|||...+.+.|..|+...+
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi----~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI----NDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE----CTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE----cCC-------cEEEEeecHHHHHHHHHHhc
Confidence 4456788888 9999999999999999999765555 222 39999999999998876543
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.02 E-value=0.043 Score=53.67 Aligned_cols=74 Identities=15% Similarity=0.323 Sum_probs=54.2
Q ss_pred cEEEEcCCCCCCCHHH----H--HHHhccCCceEEEEEeeccCCCCCCccccEE--EEEecchhhHHHHHhccCCccccc
Q psy14559 12 KVVQVANIAPQATRDQ----M--QTLFGYLGKVEDLRLYPIARDVSIPVQSRIC--YVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 12 ~tLfVgNLp~~vTeed----L--r~lFs~~G~I~~v~i~~~~~d~~~~~~~g~a--FV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
.-+||-+||+.+-.|+ | .++|++||+|..|.+ -+.. .+.....+.+ ||.|.+.+||..++...++.+.|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv-Nkkt-~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV-NKKT-SSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEe-cccc-cccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4589999999987776 3 369999999999988 2211 1212223334 999999999999998887777777
Q ss_pred eeEE
Q psy14559 84 ALVV 87 (405)
Q Consensus 84 ~~~v 87 (405)
+.+-
T Consensus 193 r~lk 196 (480)
T COG5175 193 RVLK 196 (480)
T ss_pred ceEe
Confidence 6654
No 171
>KOG0129|consensus
Probab=94.83 E-value=0.096 Score=54.00 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc----cCCccc
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL----TNTVFI 81 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~----~n~~~~ 81 (405)
.-.+.+|||||+||--+|-++|-.+|+ -||.|.-+-| |.|...+..+|-|=|.|.+..+..+|+.. .+...+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI---DtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~ 442 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI---DTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI 442 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe---ccCcccCCCCCcceeeecccHHHHHHHhhheEEEecccc
Confidence 356789999999999999999999999 6999998888 34445677899999999999998888743 233444
Q ss_pred cceeEEeecC
Q psy14559 82 DRALVVTPYN 91 (405)
Q Consensus 82 ~~~~~vv~~~ 91 (405)
++++-|.|+.
T Consensus 443 ~KRVEIkPYv 452 (520)
T KOG0129|consen 443 DKRVEIKPYV 452 (520)
T ss_pred ceeeeeccee
Confidence 5555555554
No 172
>KOG2314|consensus
Probab=94.60 E-value=0.081 Score=55.05 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=55.2
Q ss_pred CCCCcEEEEcCCCC--CCCHHH----HHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559 8 PVKTKVVQVANIAP--QATRDQ----MQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI 81 (405)
Q Consensus 8 ~~~~~tLfVgNLp~--~vTeed----Lr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~ 81 (405)
.+-...|+|.|+|- ...-+- |..+|+++|+|..+-+ |.+. .+.++||.|++|++..+|+.|++..|+.-+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~-P~~e---~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY-PIDE---EGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee-ccCc---cCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 45678899999984 233333 4468999999999877 6544 366899999999999999999976666555
Q ss_pred cce
Q psy14559 82 DRA 84 (405)
Q Consensus 82 ~~~ 84 (405)
+..
T Consensus 131 dkn 133 (698)
T KOG2314|consen 131 DKN 133 (698)
T ss_pred ccc
Confidence 443
No 173
>KOG4849|consensus
Probab=94.32 E-value=0.039 Score=54.13 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
.+...-+|||||-|.+|++||-+-....| .|.+++++. +..+++++|||.|...+..+++.-+..+-+..+.+.-
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE---NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE---NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh---cccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 44556699999999999999998877655 477777743 3467999999999999999999888877666655444
Q ss_pred EEeecCC
Q psy14559 86 VVTPYNS 92 (405)
Q Consensus 86 ~vv~~~~ 92 (405)
-+|...+
T Consensus 154 P~V~~~N 160 (498)
T KOG4849|consen 154 PTVLSYN 160 (498)
T ss_pred Ceeeccc
Confidence 3443333
No 174
>KOG2193|consensus
Probab=94.26 E-value=0.053 Score=54.52 Aligned_cols=70 Identities=29% Similarity=0.402 Sum_probs=55.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC-ceeCCeeEEEeecc
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG-TNLKGKTLQMFHST 241 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng-~~l~g~~i~V~~a~ 241 (405)
++|++||.+..+..+|..+|...-.-.+=.+. ...|||||.+.+...|.+|++ ++| ..+.|+++.|.++-
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl----~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL----VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee----eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 68999999999999999999854100011111 135899999999999999999 998 58899999998874
No 175
>KOG2253|consensus
Probab=94.13 E-value=0.067 Score=56.63 Aligned_cols=67 Identities=24% Similarity=0.200 Sum_probs=57.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
.-++||+|+...+..+-++.+...||.|.++... .|+|+.|.+......|+. ++...++|..+.+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4689999999999999999999999999888652 299999999999999998 777788887766554
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.98 E-value=0.32 Score=36.33 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=43.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC---CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKV---GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK 224 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~---G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~ 224 (405)
..+|+|.+++. ++.++++.+|..| .....|..+.|+ .|-|.|.+.+.|.+||.
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 34799999965 8889999999988 234577777764 48999999999999986
No 177
>KOG1995|consensus
Probab=93.96 E-value=0.069 Score=52.72 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=60.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCC
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--------LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNT 78 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--------v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~ 78 (405)
....-||||-+||.++++.+|.++|.+||.|.. |+|| +++.|...++-|.|.|.+...|+.|+.. .+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y---~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIY---TDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcc---ccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 445689999999999999999999999999853 3442 3446889999999999999999999864 445
Q ss_pred ccccceeEE
Q psy14559 79 VFIDRALVV 87 (405)
Q Consensus 79 ~~~~~~~~v 87 (405)
.|.+..+.+
T Consensus 140 df~gn~ikv 148 (351)
T KOG1995|consen 140 DFCGNTIKV 148 (351)
T ss_pred cccCCCchh
Confidence 555544443
No 178
>KOG0115|consensus
Probab=93.35 E-value=0.071 Score=50.43 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=54.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
..|||.||+.-++.+.+..-|+.||+|..-.++..++ ++..+-++|.|.+.-.+.+|+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHh
Confidence 7899999999999999999999999999988866655 667888999999999999987543
No 179
>KOG0115|consensus
Probab=93.15 E-value=0.1 Score=49.41 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=59.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-eccCCCCCcEEEEEECCHHHHHHHHH-h--CC--ceeCCeeEEEeec
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNKYALVEFSDQACVIPALK-L--NG--TNLKGKTLQMFHS 240 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~~~~~rg~afV~F~~~e~A~~Al~-l--ng--~~l~g~~i~V~~a 240 (405)
..|||.||..-++.+.|..-|+.||+|....+ +.+.++..+-++|.|.+.-.+.+|+. . .| ....+++.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 57999999999999999999999999988766 45577888999999999999999987 3 22 2334555555544
No 180
>KOG0112|consensus
Probab=93.05 E-value=0.023 Score=61.78 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=63.3
Q ss_pred ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
...+|||+|||+..+++.+|+..|..+|.|..|.|-.. .+....||||.|.+...+..|+. +.|..|.--.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34689999999999999999999999999999998433 45556799999999999999987 8887776445555444
No 181
>KOG4285|consensus
Probab=92.47 E-value=0.39 Score=46.53 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=54.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCe-eEEEeecc
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGK-TLQMFHST 241 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~-~i~V~~a~ 241 (405)
=|-|-++|+.-. .-|...|++||+|.+... ...-.|-+|-|.+..+|++||..||+.|+|. .|-|....
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~----~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT----PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec----CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 355668887655 456688999999988754 2445699999999999999999999999987 45676643
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.42 E-value=1.2 Score=37.30 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKV-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG 232 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g 232 (405)
.+.+...|+-++-++|..+.+.+ ..|..+++.++...++-.+.+.|.+.++|..-.. +||+.|..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444555556666776666665 4677888888866688899999999999999887 99987764
No 183
>KOG2202|consensus
Probab=91.73 E-value=0.062 Score=50.84 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 26 DQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 26 edLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
+++...|+ +||+|+++++ -.+ ....-.|-+||.|...++|++|+...|..++.+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~V-c~N---l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a 142 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNV-CDN---LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHA 142 (260)
T ss_pred HHHHHHHHHHhhhhhhhhh-hcc---cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence 45555566 8999999987 221 12345888999999999999999877766665555443
No 184
>KOG1996|consensus
Probab=91.56 E-value=0.41 Score=46.24 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecCC
Q psy14559 25 RDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNS 92 (405)
Q Consensus 25 eedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~~ 92 (405)
++++++-+++||.|..|.|+-. .+..... .---||+|...++|.+|+-.+|+.|++++...-.+++
T Consensus 300 ede~keEceKyg~V~~viifei-p~~p~de-avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEI-PSQPEDE-AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEec-CCCccch-hheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567889999999999988543 2222111 2347999999999999998888888887765544444
No 185
>KOG2416|consensus
Probab=91.55 E-value=0.088 Score=55.09 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=50.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
...+.+|+|.||---.|.-+|+.|.. .+|.|++.+| |. -+..|||.|.+.++|....+.+++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-----Dk----IKShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-----DK----IKSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH-----HH----hhcceeEecccHHHHHHHHHHHhc
Confidence 34578999999999999999999998 6888999855 22 266799999999998876654433
No 186
>KOG2068|consensus
Probab=91.16 E-value=0.081 Score=51.88 Aligned_cols=76 Identities=11% Similarity=0.238 Sum_probs=59.6
Q ss_pred CcEEEEeCCCCCCCHHHH---HHHHhcCCCeeEEEEeccC----C-CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 166 RRTLVAINIEESVSPQEL---VDFFQKVGTVNYIRFCTRE----N-DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L---~~~F~~~G~I~~i~i~~~~----~-~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
++-+||-+|+.....+++ .++|++||.|..|....++ + ....-+||+|...++|..||. .+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 456899999988766554 3689999999999886543 1 122348999999999999999 999999999877
Q ss_pred Eeecc
Q psy14559 237 MFHST 241 (405)
Q Consensus 237 V~~a~ 241 (405)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 66553
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.47 E-value=0.4 Score=43.44 Aligned_cols=74 Identities=14% Similarity=0.129 Sum_probs=42.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcc-CCce---EEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccce
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGY-LGKV---EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRA 84 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~-~G~I---~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~ 84 (405)
....|.|++||++.||+++.+..+. +|.- ..+.-..... ......-.-|||.|.+.+++..=. ..++..|.|..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~-~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKK-SFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-S-SSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCc-cCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3458999999999999999998887 7765 2332111111 111112345999999999865544 45555666644
No 188
>KOG4285|consensus
Probab=89.64 E-value=0.66 Score=45.03 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=54.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE-Eeec
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV-VTPY 90 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~-vv~~ 90 (405)
.=|-|=+.|+.-+ .-|..+|++||+|.+... +....+-+|.|.+..+|++||..+++++-+..++ |.++
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~---------~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT---------PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeec---------CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 3355556666543 457789999999998755 2347799999999999999999988887777666 4555
Q ss_pred CCC
Q psy14559 91 NSG 93 (405)
Q Consensus 91 ~~~ 93 (405)
.+.
T Consensus 268 tDk 270 (350)
T KOG4285|consen 268 TDK 270 (350)
T ss_pred CCH
Confidence 553
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.72 E-value=0.51 Score=42.79 Aligned_cols=76 Identities=9% Similarity=0.127 Sum_probs=47.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhc-CCCe---eEEEE-ecc-CC--CCCcEEEEEECCHHHHHHHHH-hCCceeCCe---
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQK-VGTV---NYIRF-CTR-EN--DTNKYALVEFSDQACVIPALK-LNGTNLKGK--- 233 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~-~G~I---~~i~i-~~~-~~--~~rg~afV~F~~~e~A~~Al~-lng~~l~g~--- 233 (405)
..+|.|++||+++|++++.+.++. +|.- .++.- ..+ .. ..-.-|||.|.+.+++..-.. ++|+.|.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 568999999999999999887776 6655 33331 111 11 123459999999999877777 999877543
Q ss_pred --eEEEeecc
Q psy14559 234 --TLQMFHST 241 (405)
Q Consensus 234 --~i~V~~a~ 241 (405)
+-.|++|-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 33556654
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.41 E-value=1.8 Score=34.26 Aligned_cols=53 Identities=11% Similarity=0.309 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN 226 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln 226 (405)
.-.||+ +|.+-...||.++|+.||.| .|..+.|+ .|||...+.+.|..|+. ++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 345555 99999999999999999987 45555543 69999999999999987 53
No 191
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=87.91 E-value=2.1 Score=37.54 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=50.5
Q ss_pred CCCCcEEEEcCCC-----CCCCHH----HHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559 8 PVKTKVVQVANIA-----PQATRD----QMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 8 ~~~~~tLfVgNLp-----~~vTee----dLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
.++..||.|.=+. ...-.+ +|-+.|+.||++.=+++. .+.-+|.|.+.++|-+|+.+++.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----------~~~mwVTF~dg~sALaals~dg~ 92 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----------GDTMWVTFRDGQSALAALSLDGI 92 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----------TTCEEEEESSCHHHHHHHHGCCS
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----------CCeEEEEECccHHHHHHHccCCc
Confidence 3456677776555 223344 566789999998888882 23489999999999999999999
Q ss_pred ccccceeEEeecC
Q psy14559 79 VFIDRALVVTPYN 91 (405)
Q Consensus 79 ~~~~~~~~vv~~~ 91 (405)
...++.+.+....
T Consensus 93 ~v~g~~l~i~LKt 105 (146)
T PF08952_consen 93 QVNGRTLKIRLKT 105 (146)
T ss_dssp EETTEEEEEEE--
T ss_pred EECCEEEEEEeCC
Confidence 9888888776543
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.20 E-value=1.8 Score=37.71 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=44.1
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHH---HhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559 8 PVKTKVVQVANIAPQA-TRDQMQT---LFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~v-TeedLr~---lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
.++-.||.|+=|..++ ..+|++. ..+.||+|.+|.+. | +.-|.|.|.+..+|-.|+.....
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--------G--rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--------G--RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--------C--CceEEEEehhhHHHHHHHHhhcC
Confidence 3456788887666654 3344554 56789999999882 2 44599999999999999865543
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.11 E-value=2.8 Score=31.30 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=41.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccC----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYL----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL 75 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~ 75 (405)
..|+|.++. +++.++|+.+|..| ++ ..|.++ .|.+ |=|.|.+.+.|..||..
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWI---dDtS-------cNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWI---DDTS-------CNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEe---cCCc-------EEEEECCHHHHHHHHHc
Confidence 478999995 58889999999998 54 567773 2334 88999999999999853
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.10 E-value=2 Score=39.24 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=43.3
Q ss_pred CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeecc
Q psy14559 179 SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHST 241 (405)
Q Consensus 179 tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~ 241 (405)
..+.|+++|..++.+..+.... +-+-..|.|.+.++|..|.. |+ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3478999999999887776532 33458999999999999998 88 999999999999885
No 195
>KOG2416|consensus
Probab=87.08 E-value=0.51 Score=49.61 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=58.1
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee---CCeeEEEee
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQ-KVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL---KGKTLQMFH 239 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~-~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l---~g~~i~V~~ 239 (405)
..+.|||.||=--.|.-+|+.+++ .||.|.+. ++ .+-+.-|||.|.+.++|.+-.. |+|..+ +++.|.+.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm---DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM---DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH---HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 356899999999999999999999 56677666 33 2345679999999999988887 999766 466777776
Q ss_pred cc
Q psy14559 240 ST 241 (405)
Q Consensus 240 a~ 241 (405)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 63
No 196
>KOG2591|consensus
Probab=86.98 E-value=1 Score=47.10 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=53.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHh--cCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQ--KVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~--~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~ 236 (405)
++.|.+.-||..+-.|+++.+|. .|-++.+|.+....+ =||+|++..+|+.|.+ |.. ..|.|++|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45678899999999999999998 588999999843322 5999999999999987 544 577787764
No 197
>KOG2135|consensus
Probab=86.60 E-value=0.46 Score=48.65 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVS-PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~t-ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
.+.+-+.-.|+..+ -.+|...|.+||+|..|.+ +.+.--|.|+|.+..+|-.|-...+..|++|.|+|.+-+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv----~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQV----DYSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccc----cCchhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 34555556666654 4789999999999999988 2234469999999999988888999999999999988764
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.91 E-value=3.1 Score=36.29 Aligned_cols=68 Identities=16% Similarity=0.313 Sum_probs=48.1
Q ss_pred CcEEEEeCCCCCC----CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 166 RRTLVAINIEESV----SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~----tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
-.||.|.=|..++ +-..+....+.||+|.++.++. +..|.|.|.+..+|-+|+. +. ...-|..+...+
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~Af~-s~~pgtm~qCsW 158 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-----RQSAVVVFKDITSACKAVSAFQ-SRAPGTMFQCSW 158 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-----CceEEEEehhhHHHHHHHHhhc-CCCCCceEEeec
Confidence 3478787554444 3345666778999999998842 4579999999999999998 44 345566555443
No 199
>KOG0804|consensus
Probab=85.87 E-value=2.5 Score=43.27 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=59.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKV-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK 233 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~ 233 (405)
...|+|--+|..+|--||..|...+ -.|.++++++|.-.++-...|.|.+.++|..-.. +||..|..-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 6789999999999999999999865 5899999998755667789999999999999988 999888653
No 200
>KOG2591|consensus
Probab=80.36 E-value=3.6 Score=43.20 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcc--CCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGY--LGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~--~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
+-|.|.++-||.++..|+++.||+. |-++.+|.+-..+ + =||.|++..||+.|.+..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---------n-WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---------N-WYITFESDTDAQQAYKYL 232 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---------c-eEEEeecchhHHHHHHHH
Confidence 4477888999999999999999975 8899999883322 1 699999999999996544
No 201
>KOG4574|consensus
Probab=77.79 E-value=2.7 Score=46.18 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=62.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee--CCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL--KGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l--~g~~i~V~~a~~ 242 (405)
.-+.++.|.+-..+..-|..+|++||.+.+....++- ..|.|+|.+.++|..|+. |+|..+ -|-+.+|..++.
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4467778888899999999999999999998765443 369999999999999998 999755 477899998875
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 5
No 202
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.92 E-value=15 Score=28.01 Aligned_cols=57 Identities=21% Similarity=0.457 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHhcCCC-----eeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 177 SVSPQELVDFFQKVGT-----VNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 177 ~~tee~L~~~F~~~G~-----I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++..+|..++...+. |-.|.+ ...|+||+-.. +.|..++. |++..+.|++++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I------~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI------FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE------eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 6788899999987644 445665 23589999866 46777777 9999999999999864
No 203
>KOG2253|consensus
Probab=64.05 E-value=3.6 Score=44.00 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=54.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
.++..++||+|+...+..+-++.+...||-|.+++. -.|||..|.+......|+.......+++.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr------------~~fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR------------DKFGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh------------hhhcccchhhHHHHHHHHHHhcccCCCcc
Confidence 456789999999999999999999999999888766 22899999999998888876666555443
No 204
>KOG2135|consensus
Probab=56.90 E-value=7.1 Score=40.29 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 10 KTKVVQVANIAPQA-TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 10 ~~~tLfVgNLp~~v-TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
..++|-+.-.|+.. |-.+|-..|.+||+|..|.+- .+.-.|.|.|.+..+|-.|-.....++-++. +-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~---------~~~~~a~vTF~t~aeag~a~~s~~avlnnr~-iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVD---------YSSLHAVVTFKTRAEAGEAYASHGAVLNNRF-IKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCcccccccc---------CchhhheeeeeccccccchhccccceecCce-eEE
Confidence 34566666666654 678899999999999999991 1245699999999998766544444444433 334
Q ss_pred ecCC
Q psy14559 89 PYNS 92 (405)
Q Consensus 89 ~~~~ 92 (405)
.|.+
T Consensus 441 ~whn 444 (526)
T KOG2135|consen 441 FWHN 444 (526)
T ss_pred EEec
Confidence 4433
No 205
>KOG2068|consensus
Probab=54.26 E-value=9.2 Score=37.82 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=48.2
Q ss_pred cEEEEcCCCCCCCHHHH-H--HHhccCCceEEEEEeeccCC-CCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 12 KVVQVANIAPQATRDQM-Q--TLFGYLGKVEDLRLYPIARD-VSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedL-r--~lFs~~G~I~~v~i~~~~~d-~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
.-+||-+|+...-.+.+ + +.|.+||.|..|... .+.- .+......-+||.|...++|..|+..-+++..+.+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~-~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKN-KDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeec-CCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 45788899987654444 4 489999999999882 2110 001112234899999999999988765555554443
No 206
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.14 E-value=24 Score=29.73 Aligned_cols=47 Identities=23% Similarity=0.397 Sum_probs=27.9
Q ss_pred CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEEC-CHHHHHHHHHh
Q psy14559 178 VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFS-DQACVIPALKL 225 (405)
Q Consensus 178 ~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~-~~e~A~~Al~l 225 (405)
.+.++|++.|+.|..+.-..+... ...+|++.|.|. +...-..|+.|
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~-~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGK-QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEET-TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCC-CCCcEEEEEEECCChHHHHHHHHH
Confidence 456899999999988764444333 346899999998 44555666654
No 207
>KOG2318|consensus
Probab=49.61 E-value=80 Score=33.76 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=58.9
Q ss_pred cccCcEEEEeCCCCC-CCHHHHHHHHhcC----CCeeEEEEec-c-----------CCC---------------------
Q psy14559 163 EEIRRTLVAINIEES-VSPQELVDFFQKV----GTVNYIRFCT-R-----------END--------------------- 204 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~-~tee~L~~~F~~~----G~I~~i~i~~-~-----------~~~--------------------- 204 (405)
....+.|-|.|++|+ +..++|.-+|+.| |.|.+|.|.. . .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 344788999999995 7889999999976 6999999851 1 111
Q ss_pred ----------------CCcEEEEEECCHHHHHHHHH-hCCceeC--CeeEEEeec
Q psy14559 205 ----------------TNKYALVEFSDQACVIPALK-LNGTNLK--GKTLQMFHS 240 (405)
Q Consensus 205 ----------------~rg~afV~F~~~e~A~~Al~-lng~~l~--g~~i~V~~a 240 (405)
.--||.|+|.+.+.|.+... .+|..|. |..|.+.+-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01369999999999999888 9999887 445555443
No 208
>KOG4410|consensus
Probab=46.99 E-value=1.7e+02 Score=28.61 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=37.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEeccCCCCCcEEEEEECCHH
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGT-VNYIRFCTRENDTNKYALVEFSDQA 217 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~~~~~~~rg~afV~F~~~e 217 (405)
..-||++|||.++.-.+|+..+.+-|. -.++.. ..+.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 345999999999999999999987763 345555 235678999998754
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=44.60 E-value=32 Score=33.64 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccC----CCCCCccccEEEEEecchhh
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIAR----DVSIPVQSRICYVKFFDEKC 68 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~----d~~~~~~~g~aFV~F~~~e~ 68 (405)
.+.+|.|...|+...++--.+-.-|-+||+|++|.++.... +....+......+.|-+.+.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~ 76 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREI 76 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHH
Confidence 56678899999999999999999999999999999966541 01122345668888888873
No 210
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.53 E-value=46 Score=24.85 Aligned_cols=18 Identities=22% Similarity=0.539 Sum_probs=16.0
Q ss_pred HHHHHHhccCCceEEEEE
Q psy14559 26 DQMQTLFGYLGKVEDLRL 43 (405)
Q Consensus 26 edLr~lFs~~G~I~~v~i 43 (405)
.+||++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999988766
No 211
>KOG4483|consensus
Probab=43.06 E-value=55 Score=33.36 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=49.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~ 234 (405)
..-|=|.|+|.....++|...|+.|| .-.+|.++.|+ .||-.|.+...|..||-|....++=|+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEEeee
Confidence 45788999999999999999999997 44566666554 599999999999999987444444343
No 212
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.95 E-value=38 Score=28.49 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=31.7
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhh-HHHHHhc
Q psy14559 13 VVQVANIAPQ---------ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKC-VGISQHL 75 (405)
Q Consensus 13 tLfVgNLp~~---------vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~-A~~Al~~ 75 (405)
++.|-|++.. ++-+.|++.|+.|..++-..++.. ..+.|++.|.|.+.-+ -..|+.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~------~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGK------QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEET------TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCC------CCCcEEEEEEECCChHHHHHHHHH
Confidence 4566677542 466889999999999765555322 3478999999998776 4556544
No 213
>KOG4410|consensus
Probab=41.05 E-value=46 Score=32.43 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=38.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCce-EEEEEeeccCCCCCCccccEEEEEecchhhH
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKV-EDLRLYPIARDVSIPVQSRICYVKFFDEKCV 69 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I-~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A 69 (405)
..-||++|||.++.-.||+.-..+.|-+ .++.+ ..+.|-||..|.+...+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw---------kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW---------KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee---------ecCCcceeEecCCccCC
Confidence 4569999999999999999888776553 45555 23578899999998744
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=39.64 E-value=86 Score=28.59 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=36.6
Q ss_pred CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC---CccccceeE
Q psy14559 24 TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN---TVFIDRALV 86 (405)
Q Consensus 24 TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n---~~~~~~~~~ 86 (405)
..+.|+++|..|+.+.++..+++ -+-..|.|.+.++|..|..... ..+.+..+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 45789999999999999877443 3348899999999999976544 445554433
No 215
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=39.05 E-value=60 Score=24.23 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCeeEEEE
Q psy14559 181 QELVDFFQKVGTVNYIRF 198 (405)
Q Consensus 181 e~L~~~F~~~G~I~~i~i 198 (405)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999987766
No 216
>KOG4008|consensus
Probab=38.45 E-value=21 Score=33.70 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRL 43 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i 43 (405)
..+..++|+-|+|..+|++.|..+-+.+|-+..+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 457789999999999999999999999997666544
No 217
>KOG4008|consensus
Probab=35.87 E-value=27 Score=33.04 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=29.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF 198 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i 198 (405)
++++|+-|+|..+|++.|..+.+++|-+..+.+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 678999999999999999999999997666544
No 218
>KOG4213|consensus
Probab=35.71 E-value=31 Score=31.35 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEecc-CC--CCCcEEEEEECCHHHHHHHHHhC
Q psy14559 151 PPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ-KVGTVNYIRFCTR-EN--DTNKYALVEFSDQACVIPALKLN 226 (405)
Q Consensus 151 p~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~-~~G~I~~i~i~~~-~~--~~rg~afV~F~~~e~A~~Al~ln 226 (405)
.|+|...+.-......|++|.. .|+++|.++-. .-|++..+..... .+ ..+|.-||+|.+.+.|.+.+.-.
T Consensus 96 kplpEvt~e~~~~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 96 KPLPEVTDEYKEGIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCCccccHHHHHHHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 3444444433444557889887 55555555444 1278888876432 33 46788999999999998876643
Q ss_pred Cce
Q psy14559 227 GTN 229 (405)
Q Consensus 227 g~~ 229 (405)
+..
T Consensus 171 e~~ 173 (205)
T KOG4213|consen 171 EEK 173 (205)
T ss_pred hhh
Confidence 333
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=35.52 E-value=1.9e+02 Score=21.74 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q psy14559 177 SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQM 237 (405)
Q Consensus 177 ~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V 237 (405)
.++-++++.-+..|+- .+|.. ..+ | =||.|.+..+|+++.. .+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~-d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD-DRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe-cCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999974 34432 112 2 5999999999999998 9999888877654
No 220
>KOG2318|consensus
Probab=34.21 E-value=45 Score=35.56 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=34.7
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhccC----CceEEEEEeecc
Q psy14559 8 PVKTKVVQVANIAPQ-ATRDQMQTLFGYL----GKVEDLRLYPIA 47 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~-vTeedLr~lFs~~----G~I~~v~i~~~~ 47 (405)
...++.|-|-|+.|. +.-.+|.-+|+.| |.|.+|.|||+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe 215 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE 215 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh
Confidence 346789999999995 8999999999876 699999999874
No 221
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=33.43 E-value=2.8e+02 Score=23.02 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL 75 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~ 75 (405)
..+..+.+...|..++-++|..+.+.+-+ |..++|+... ..++--+.+.|.+.++|..=...
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-----~pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-----TPNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-----CCceEEEEEEECCHHHHHHHHHH
Confidence 34555666667777777788777777644 7778884321 12466789999999988765443
No 222
>KOG0156|consensus
Probab=29.83 E-value=1.1e+02 Score=32.22 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=45.8
Q ss_pred EEeCCCCCCCH---HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeE
Q psy14559 170 VAINIEESVSP---QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTL 235 (405)
Q Consensus 170 fV~NLp~~~te---e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i 235 (405)
+||||..-... ..+.++=.+||+|-.+++ |. .-.|.-.+.+.|+.|+.-+|..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l----G~---~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL----GS---VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEe----cC---ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 56777664333 556666669999999988 32 2578889999999999999999999986
No 223
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=28.92 E-value=76 Score=31.08 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=57.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccC---------CCCCcEEEEEECCHHHHHHH----HH-hCC--ce
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE---------NDTNKYALVEFSDQACVIPA----LK-LNG--TN 229 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~---------~~~rg~afV~F~~~e~A~~A----l~-lng--~~ 229 (405)
.|.|...|+..+++--.+..-|-+||+|++|.+..+. .+......+.|-+.+.+..- ++ |+. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999988899999999999999997543 12446788999988776442 22 333 46
Q ss_pred eCCeeEEEeecc
Q psy14559 230 LKGKTLQMFHST 241 (405)
Q Consensus 230 l~g~~i~V~~a~ 241 (405)
++...|++.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 677777777664
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=28.78 E-value=29 Score=27.75 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHh
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQ 188 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~ 188 (405)
+++|.|.|||....+++|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 78999999999999999988754
No 225
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=26.01 E-value=1.4e+02 Score=23.76 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=33.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSD 215 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~ 215 (405)
..-|||||++..+-+.--..+.+.++.=.-+-+-.+.+ ..||+|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeCC
Confidence 45699999999998876666666555433332333333 78999988843
No 226
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=25.89 E-value=1.3e+02 Score=25.70 Aligned_cols=31 Identities=13% Similarity=-0.033 Sum_probs=25.4
Q ss_pred EEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEe
Q psy14559 169 LVAINIEES-VSPQELVDFFQKVGTVNYIRFC 199 (405)
Q Consensus 169 vfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~ 199 (405)
|-|.|||.. .+++-++.+-+.+|++..+...
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 556699997 5778899999999999888763
No 227
>KOG2891|consensus
Probab=23.15 E-value=68 Score=31.13 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=37.7
Q ss_pred CcEEEEcCCCC------------CCCHHHHHHHhccCCceEEEEEeeccCCC---CCCccccEEEEEecchh
Q psy14559 11 TKVVQVANIAP------------QATRDQMQTLFGYLGKVEDLRLYPIARDV---SIPVQSRICYVKFFDEK 67 (405)
Q Consensus 11 ~~tLfVgNLp~------------~vTeedLr~lFs~~G~I~~v~i~~~~~d~---~~~~~~g~aFV~F~~~e 67 (405)
.-||+..+||- --+++-|+..|..||.|..|.| |..... -+++.+|+-|-.|.=..
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi-picdplr~~mn~kisgiq~~gfg~g~ 219 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI-PICDPLREEMNGKISGIQFHGFGFGG 219 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC-cccchhHHHhcCccccceeeccccCc
Confidence 35788888872 2578899999999999999988 543211 14555665555554433
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.02 E-value=2.6e+02 Score=21.73 Aligned_cols=54 Identities=9% Similarity=0.141 Sum_probs=39.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHH
Q psy14559 168 TLVAINIEESVSPQELVDFFQK-VG-TVNYIRFCTRENDTNKYALVEFSDQACVIPA 222 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~-~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~A 222 (405)
.-|+-..+...+..+++..+++ || +|.+|......+ ...=|||++..-..|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CceEEEEEECCCCcHHHH
Confidence 4677788999999999999986 67 777776533222 234599999877666543
No 229
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.29 E-value=3.1e+02 Score=19.76 Aligned_cols=51 Identities=14% Similarity=0.303 Sum_probs=31.3
Q ss_pred HHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEEC--CHHHHHHHHHhCCceeC
Q psy14559 181 QELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFS--DQACVIPALKLNGTNLK 231 (405)
Q Consensus 181 e~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~--~~e~A~~Al~lng~~l~ 231 (405)
..+.++|.++| .|.++.............++.+. +.+.+..+|.-.|..+.
T Consensus 16 ~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 16 ADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 56778899887 77777553322223334455554 56677777776676554
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.29 E-value=2.8e+02 Score=21.96 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=39.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHH
Q psy14559 168 TLVAINIEESVSPQELVDFFQK-VG-TVNYIRFCTRENDTNKYALVEFSDQACVIPA 222 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~-~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~A 222 (405)
.-|+--.+...+..+++..+++ || +|.+|......+ ...=|||++..-..|...
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~v 77 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEI 77 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHH
Confidence 4667778999999999999996 67 777876643322 234599999887777654
Done!