Query psy14559
Match_columns 405
No_of_seqs 308 out of 2050
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:58:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.6E-31 5.6E-36 247.1 19.7 167 8-241 12-179 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 4.2E-30 1.4E-34 225.6 19.0 162 12-241 1-165 (166)
3 1l3k_A Heterogeneous nuclear r 100.0 7.8E-30 2.7E-34 230.7 21.0 171 8-242 10-182 (196)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-29 3.6E-34 224.0 18.6 162 10-240 2-168 (168)
5 2cjk_A Nuclear polyadenylated 100.0 4.5E-30 1.5E-34 226.4 15.7 161 10-241 2-164 (167)
6 2qfj_A FBP-interacting repress 100.0 4.5E-29 1.5E-33 229.1 22.0 175 10-243 27-205 (216)
7 1fxl_A Paraneoplastic encephal 100.0 2.6E-29 9E-34 220.7 19.5 161 10-240 1-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 2E-29 7E-34 223.3 18.5 167 10-240 2-174 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 9.6E-29 3.3E-33 218.9 18.0 157 9-241 2-172 (172)
10 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-28 4E-33 237.6 18.1 224 8-356 38-271 (292)
11 3smz_A Protein raver-1, ribonu 100.0 6.4E-28 2.2E-32 231.5 21.6 221 9-324 20-254 (284)
12 2yh0_A Splicing factor U2AF 65 100.0 1.2E-27 4.1E-32 216.6 21.2 178 9-242 2-193 (198)
13 3pgw_A U1-A; protein-RNA compl 100.0 5.2E-27 1.8E-31 224.9 26.3 229 4-241 2-281 (282)
14 1fje_B Nucleolin RBD12, protei 100.0 7.4E-29 2.5E-33 220.7 12.4 164 6-241 8-172 (175)
15 2adc_A Polypyrimidine tract-bi 100.0 8.8E-27 3E-31 217.6 22.7 199 1-242 24-227 (229)
16 3tyt_A Heterogeneous nuclear r 100.0 4.5E-27 1.5E-31 216.7 19.6 190 9-239 2-203 (205)
17 3smz_A Protein raver-1, ribonu 99.9 2.1E-26 7.1E-31 221.0 19.8 167 9-241 93-262 (284)
18 3sde_A Paraspeckle component 1 99.9 1.4E-26 4.7E-31 220.6 17.4 155 8-243 19-179 (261)
19 1qm9_A Polypyrimidine tract-bi 99.9 3.6E-26 1.2E-30 207.7 17.9 188 10-242 2-196 (198)
20 2ghp_A U4/U6 snRNA-associated 99.9 4.1E-26 1.4E-30 219.7 17.6 171 9-242 115-290 (292)
21 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 6.8E-24 157.9 14.4 78 166-243 70-150 (158)
22 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-18 3.6E-23 142.2 10.9 76 166-241 19-97 (99)
23 4f25_A Polyadenylate-binding p 99.8 1.4E-18 4.7E-23 145.1 8.9 78 8-90 2-79 (115)
24 2i2y_A Fusion protein consists 99.7 4.7E-18 1.6E-22 148.1 10.9 136 53-242 10-147 (150)
25 4f25_A Polyadenylate-binding p 99.7 8.2E-18 2.8E-22 140.4 10.5 77 166-242 5-82 (115)
26 3s8s_A Histone-lysine N-methyl 99.7 1.2E-17 4.2E-22 138.5 11.3 76 166-241 6-84 (110)
27 2err_A Ataxin-2-binding protei 99.7 1.4E-17 4.7E-22 137.7 9.8 80 163-242 26-106 (109)
28 2lkz_A RNA-binding protein 5; 99.7 6.3E-18 2.1E-22 136.7 7.5 77 166-242 9-94 (95)
29 2lxi_A RNA-binding protein 10; 99.7 7.2E-18 2.5E-22 135.0 7.8 76 167-242 2-82 (91)
30 2cq3_A RNA-binding protein 9; 99.7 8.4E-17 2.9E-21 131.1 14.2 79 166-244 15-94 (103)
31 2cqi_A Nucleolysin TIAR; RNA r 99.7 7E-17 2.4E-21 131.5 13.6 79 165-243 14-93 (103)
32 4f02_A Polyadenylate-binding p 99.7 7.7E-17 2.6E-21 148.4 14.8 146 166-325 15-172 (213)
33 3s7r_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 129.2 10.6 76 165-240 10-87 (87)
34 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3E-17 1E-21 128.7 9.9 76 166-241 7-85 (85)
35 2dgs_A DAZ-associated protein 99.7 7.4E-17 2.5E-21 130.4 12.5 78 166-243 10-89 (99)
36 1s79_A Lupus LA protein; RRM, 99.7 2.2E-17 7.5E-22 135.4 9.3 76 166-241 11-87 (103)
37 3p5t_L Cleavage and polyadenyl 99.7 6.7E-18 2.3E-22 134.5 5.8 76 167-242 2-82 (90)
38 3md1_A Nuclear and cytoplasmic 99.7 6.5E-17 2.2E-21 126.2 10.8 76 167-242 2-80 (83)
39 3md3_A Nuclear and cytoplasmic 99.7 8.3E-17 2.8E-21 140.5 12.7 146 167-324 1-157 (166)
40 2dgv_A HnRNP M, heterogeneous 99.7 5.2E-17 1.8E-21 129.3 10.4 78 166-243 8-86 (92)
41 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.7E-17 1.9E-21 127.6 10.5 76 166-241 6-84 (87)
42 1whw_A Hypothetical protein ri 99.7 1.1E-16 3.7E-21 129.3 12.3 78 166-243 8-88 (99)
43 2d9p_A Polyadenylate-binding p 99.7 7.3E-17 2.5E-21 131.4 11.0 78 166-243 15-93 (103)
44 2cqc_A Arginine/serine-rich sp 99.7 8.3E-17 2.8E-21 128.8 11.1 77 166-242 15-94 (95)
45 2x1f_A MRNA 3'-END-processing 99.7 9.1E-17 3.1E-21 129.3 11.1 77 166-242 2-81 (96)
46 2ywk_A Putative RNA-binding pr 99.7 6.2E-17 2.1E-21 129.7 10.1 77 166-242 16-94 (95)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.9E-17 2.7E-21 130.9 10.8 78 166-243 12-92 (102)
48 3ucg_A Polyadenylate-binding p 99.7 9.4E-17 3.2E-21 126.9 10.9 77 166-242 6-84 (89)
49 2cq4_A RNA binding motif prote 99.7 6.7E-17 2.3E-21 134.2 10.5 79 163-241 22-102 (114)
50 2cph_A RNA binding motif prote 99.7 1.4E-16 4.7E-21 130.5 12.1 78 166-243 15-97 (107)
51 2dnz_A Probable RNA-binding pr 99.7 1.7E-16 5.8E-21 127.1 12.4 78 166-243 5-85 (95)
52 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-16 4E-21 127.8 11.3 76 166-241 16-94 (94)
53 2cq0_A Eukaryotic translation 99.7 1.2E-16 4.1E-21 130.1 11.4 79 165-243 14-95 (103)
54 2dgo_A Cytotoxic granule-assoc 99.7 1.9E-16 6.6E-21 131.5 12.8 78 166-243 15-95 (115)
55 1x5t_A Splicing factor 3B subu 99.7 1.1E-16 3.9E-21 128.4 10.9 78 166-243 5-86 (96)
56 2krb_A Eukaryotic translation 99.7 2.8E-17 9.4E-22 128.2 7.1 71 167-237 2-80 (81)
57 2la6_A RNA-binding protein FUS 99.7 9.7E-17 3.3E-21 129.8 10.6 76 166-241 13-99 (99)
58 1fxl_A Paraneoplastic encephal 99.7 1.4E-16 5E-21 139.0 12.4 147 166-324 2-158 (167)
59 2cpz_A CUG triplet repeat RNA- 99.7 2E-16 6.9E-21 131.5 12.6 78 166-243 25-105 (115)
60 2do4_A Squamous cell carcinoma 99.7 1.8E-16 6.3E-21 128.3 12.0 77 166-242 17-95 (100)
61 2khc_A Testis-specific RNP-typ 99.7 1.1E-16 3.8E-21 133.5 10.9 77 165-241 39-118 (118)
62 3r27_A HnRNP L, heterogeneous 99.7 9.1E-17 3.1E-21 130.9 10.0 75 165-243 20-97 (100)
63 2dgx_A KIAA0430 protein; RRM d 99.7 1.7E-16 5.9E-21 127.9 11.6 77 166-243 9-90 (96)
64 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-16 4.9E-21 131.6 11.4 80 164-243 23-104 (109)
65 2dnm_A SRP46 splicing factor; 99.7 1E-16 3.4E-21 130.6 10.3 78 166-243 13-93 (103)
66 1x5u_A Splicing factor 3B subu 99.7 2.1E-16 7E-21 129.1 12.1 78 166-243 15-95 (105)
67 2mss_A Protein (musashi1); RNA 99.7 3.6E-17 1.2E-21 125.3 7.0 73 168-240 1-75 (75)
68 3ns6_A Eukaryotic translation 99.7 2.6E-17 8.7E-22 133.9 6.5 76 166-241 6-91 (100)
69 1b7f_A Protein (SXL-lethal pro 99.7 1.3E-16 4.5E-21 139.8 11.5 146 166-323 3-158 (168)
70 2jrs_A RNA-binding protein 39; 99.7 1.1E-16 3.8E-21 132.1 10.3 77 166-242 26-105 (108)
71 2cpf_A RNA binding motif prote 99.7 1.3E-16 4.4E-21 128.7 10.4 78 166-243 5-88 (98)
72 1sjq_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 131.4 10.3 76 166-245 16-94 (105)
73 2dnh_A Bruno-like 5, RNA bindi 99.7 2.5E-16 8.5E-21 128.6 12.2 78 166-243 15-97 (105)
74 1x5s_A Cold-inducible RNA-bind 99.7 1.6E-16 5.6E-21 129.0 10.9 78 166-243 12-92 (102)
75 2nlw_A Eukaryotic translation 99.7 7.7E-17 2.6E-21 132.2 8.9 77 166-242 15-99 (105)
76 2fy1_A RNA-binding motif prote 99.7 2E-16 6.9E-21 132.2 11.7 78 166-243 7-86 (116)
77 1x4h_A RNA-binding protein 28; 99.7 2.8E-16 9.7E-21 129.4 12.3 78 166-243 15-101 (111)
78 1l3k_A Heterogeneous nuclear r 99.7 6.6E-16 2.3E-20 138.9 15.3 147 165-324 12-173 (196)
79 3ulh_A THO complex subunit 4; 99.7 2.1E-16 7.1E-21 129.5 10.8 76 166-241 29-106 (107)
80 2dng_A Eukaryotic translation 99.7 4.5E-16 1.6E-20 126.8 12.5 77 166-243 15-93 (103)
81 2cqd_A RNA-binding region cont 99.7 6.3E-16 2.2E-20 128.6 13.5 78 165-243 16-96 (116)
82 1p27_B RNA-binding protein 8A; 99.7 2.2E-16 7.4E-21 129.2 10.4 77 166-242 23-102 (106)
83 2div_A TRNA selenocysteine ass 99.7 2.1E-16 7.2E-21 127.6 10.0 77 166-242 9-93 (99)
84 2cpy_A RNA-binding protein 12; 99.7 1.9E-16 6.3E-21 131.8 9.9 76 166-241 15-92 (114)
85 4a8x_A RNA-binding protein wit 99.7 2.2E-16 7.4E-21 124.4 9.5 76 166-241 4-83 (88)
86 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.6E-21 125.7 8.7 72 166-241 7-79 (89)
87 2dgp_A Bruno-like 4, RNA bindi 99.7 3.3E-16 1.1E-20 128.1 10.9 78 166-243 13-96 (106)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.3E-17 2.1E-21 131.5 6.5 76 166-242 19-97 (100)
89 3n9u_C Cleavage and polyadenyl 99.7 2.2E-16 7.6E-21 139.1 10.5 77 165-241 54-135 (156)
90 2do0_A HnRNP M, heterogeneous 99.7 4.5E-16 1.6E-20 128.9 11.8 78 166-243 15-94 (114)
91 1oo0_B CG8781-PA, drosophila Y 99.7 3.5E-16 1.2E-20 128.9 11.0 77 166-242 26-105 (110)
92 1x4a_A Splicing factor, argini 99.7 9.3E-16 3.2E-20 126.2 13.3 77 166-243 22-99 (109)
93 2dh8_A DAZ-associated protein 99.7 2.6E-16 8.8E-21 128.6 9.8 79 166-244 16-96 (105)
94 1wi8_A EIF-4B, eukaryotic tran 99.7 5.9E-16 2E-20 126.3 11.7 77 166-243 15-94 (104)
95 2jwn_A Embryonic polyadenylate 99.7 2E-16 6.9E-21 133.1 9.2 79 164-242 34-114 (124)
96 2cq1_A PTB-like protein L; RRM 99.7 9.1E-16 3.1E-20 125.4 12.8 74 166-243 15-91 (101)
97 1wg5_A Heterogeneous nuclear r 99.7 5.3E-16 1.8E-20 126.9 11.4 78 166-243 15-94 (104)
98 2cpe_A RNA-binding protein EWS 99.7 5.1E-16 1.8E-20 128.5 11.4 78 166-243 15-103 (113)
99 1u6f_A Tcubp1, RNA-binding pro 99.7 4.8E-16 1.6E-20 133.4 11.6 80 164-243 40-122 (139)
100 2kt5_A RNA and export factor-b 99.7 6.2E-16 2.1E-20 130.3 12.0 80 166-245 35-116 (124)
101 1x4b_A Heterogeneous nuclear r 99.7 8.1E-16 2.8E-20 128.0 12.5 79 165-243 26-106 (116)
102 2cpi_A CCR4-NOT transcription 99.7 2.5E-16 8.5E-21 130.4 9.2 78 166-243 15-101 (111)
103 2dgw_A Probable RNA-binding pr 99.7 5.6E-16 1.9E-20 123.2 10.7 76 166-242 10-86 (91)
104 2db1_A Heterogeneous nuclear r 99.7 2.7E-16 9.1E-21 131.9 9.1 76 166-241 17-96 (118)
105 3lqv_A PRE-mRNA branch site pr 99.7 8E-16 2.7E-20 127.7 11.8 76 166-242 8-84 (115)
106 2kxn_B Transformer-2 protein h 99.6 3.7E-16 1.3E-20 133.2 9.8 77 166-242 46-125 (129)
107 2ad9_A Polypyrimidine tract-bi 99.6 6.2E-16 2.1E-20 130.0 11.0 77 166-246 31-110 (119)
108 1p1t_A Cleavage stimulation fa 99.6 1.4E-16 4.6E-21 129.8 6.8 76 166-241 8-86 (104)
109 3tyt_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 139.9 14.0 75 166-243 4-80 (205)
110 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.9E-20 121.3 11.8 72 166-243 8-80 (90)
111 2dhg_A TRNA selenocysteine ass 99.6 3.7E-16 1.3E-20 127.3 9.2 78 166-243 9-90 (104)
112 2dnn_A RNA-binding protein 12; 99.6 4.9E-16 1.7E-20 128.8 10.0 75 166-241 16-91 (109)
113 2lea_A Serine/arginine-rich sp 99.6 2.3E-16 8E-21 135.5 8.3 78 166-243 47-127 (135)
114 1wex_A Hypothetical protein (r 99.6 9E-16 3.1E-20 126.1 11.4 75 166-244 15-92 (104)
115 2ytc_A PRE-mRNA-splicing facto 99.6 9.1E-16 3.1E-20 120.2 10.9 72 166-241 12-85 (85)
116 1x4e_A RNA binding motif, sing 99.6 9.9E-17 3.4E-21 125.9 5.3 76 166-241 5-83 (85)
117 1wez_A HnRNP H', FTP-3, hetero 99.6 2.2E-16 7.4E-21 129.1 7.4 77 166-243 15-92 (102)
118 2cqp_A RNA-binding protein 12; 99.6 3.4E-16 1.2E-20 126.2 8.4 77 166-242 15-94 (98)
119 1iqt_A AUF1, heterogeneous nuc 99.6 9.4E-17 3.2E-21 122.9 4.8 73 168-240 1-75 (75)
120 2ek1_A RNA-binding protein 12; 99.6 2E-16 6.9E-21 126.6 7.0 76 166-241 15-93 (95)
121 2cqg_A TDP-43, TAR DNA-binding 99.6 1.7E-15 5.8E-20 123.2 12.6 77 166-243 15-93 (103)
122 2ki2_A SS-DNA binding protein 99.6 8.6E-17 3E-21 127.6 4.7 76 167-243 2-80 (90)
123 2jvr_A Nucleolar protein 3; RN 99.6 4.3E-16 1.5E-20 129.5 9.1 74 166-241 28-103 (111)
124 1whx_A Hypothetical protein ri 99.6 8.9E-16 3.1E-20 127.3 11.0 76 166-245 10-86 (111)
125 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.9E-16 6.4E-21 121.7 6.4 73 167-240 1-76 (77)
126 2jvo_A Nucleolar protein 3; nu 99.6 7.3E-16 2.5E-20 127.2 10.3 72 165-242 30-102 (108)
127 2a3j_A U1 small nuclear ribonu 99.6 5.8E-16 2E-20 131.8 10.0 76 166-242 29-109 (127)
128 2qfj_A FBP-interacting repress 99.6 1.1E-15 3.8E-20 139.5 12.5 151 166-324 28-195 (216)
129 2cjk_A Nuclear polyadenylated 99.6 2.5E-16 8.4E-21 138.1 7.6 145 166-324 3-156 (167)
130 2dgt_A RNA-binding protein 30; 99.6 2.4E-15 8.1E-20 119.9 12.6 72 166-243 10-82 (92)
131 3pgw_S U1-70K; protein-RNA com 99.6 5.3E-16 1.8E-20 158.2 10.8 78 166-243 102-182 (437)
132 3ex7_B RNA-binding protein 8A; 99.6 8E-16 2.7E-20 129.8 10.1 78 166-243 22-102 (126)
133 2xnq_A Nuclear polyadenylated 99.6 1.6E-15 5.5E-20 122.6 11.4 71 166-242 22-94 (97)
134 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.8E-15 6.2E-20 129.5 12.3 75 166-240 63-140 (140)
135 2hgl_A HNRPF protein, heteroge 99.6 3.6E-16 1.2E-20 134.6 7.9 76 166-241 44-123 (136)
136 2dnp_A RNA-binding protein 14; 99.6 1.7E-15 5.9E-20 120.2 11.2 72 166-243 9-81 (90)
137 2dis_A Unnamed protein product 99.6 1.2E-15 4.1E-20 125.3 10.2 78 166-243 8-92 (109)
138 2la4_A Nuclear and cytoplasmic 99.6 1.1E-15 3.6E-20 124.0 9.5 72 166-241 27-99 (101)
139 2cpd_A Apobec-1 stimulating pr 99.6 5E-15 1.7E-19 119.6 13.5 72 166-243 15-89 (99)
140 1x4d_A Matrin 3; structural ge 99.6 6.8E-16 2.3E-20 126.3 8.3 74 166-243 15-92 (102)
141 1x4c_A Splicing factor, argini 99.6 2.6E-15 8.9E-20 123.6 11.9 72 166-242 15-92 (108)
142 2fc9_A NCL protein; structure 99.6 2.1E-15 7.3E-20 122.2 11.2 75 166-243 15-91 (101)
143 4fxv_A ELAV-like protein 1; RN 99.6 1.2E-15 4.1E-20 124.0 9.5 80 9-91 17-96 (99)
144 1x4g_A Nucleolysin TIAR; struc 99.6 2.6E-15 9E-20 123.6 11.6 74 166-243 25-99 (109)
145 1nu4_A U1A RNA binding domain; 99.6 6E-16 2.1E-20 124.3 7.5 76 166-242 8-88 (97)
146 2lmi_A GRSF-1, G-rich sequence 99.6 3.2E-16 1.1E-20 128.9 6.0 76 166-241 11-90 (107)
147 3pgw_A U1-A; protein-RNA compl 99.6 1.7E-15 6E-20 144.6 12.0 77 166-243 9-90 (282)
148 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.5E-15 8.6E-20 131.6 12.0 79 165-243 38-119 (156)
149 2m2b_A RNA-binding protein 10; 99.6 3.4E-16 1.2E-20 133.4 6.2 78 165-243 22-108 (131)
150 2cpj_A Non-POU domain-containi 99.6 2.6E-15 9.1E-20 121.3 11.0 74 166-243 15-89 (99)
151 2g4b_A Splicing factor U2AF 65 99.6 3.4E-15 1.2E-19 131.4 12.3 143 166-324 4-164 (172)
152 3s8s_A Histone-lysine N-methyl 99.6 1.8E-15 6.1E-20 125.4 9.7 83 7-92 2-84 (110)
153 2hvz_A Splicing factor, argini 99.6 1.1E-15 3.9E-20 123.8 8.1 74 167-243 1-75 (101)
154 1fjc_A Nucleolin RBD2, protein 99.6 9.7E-16 3.3E-20 123.0 7.4 75 165-242 15-90 (96)
155 1wel_A RNA-binding protein 12; 99.6 9.8E-16 3.3E-20 129.3 7.8 76 166-241 25-102 (124)
156 1why_A Hypothetical protein ri 99.6 2.7E-15 9.1E-20 120.8 9.9 73 166-242 17-92 (97)
157 1x5o_A RNA binding motif, sing 99.6 2.4E-15 8.3E-20 124.6 9.7 76 166-241 25-110 (114)
158 2dha_A FLJ20171 protein; RRM d 99.6 8.1E-16 2.8E-20 130.2 6.8 76 166-241 23-103 (123)
159 2e5j_A Methenyltetrahydrofolat 99.6 3E-15 1E-19 120.6 9.8 74 166-242 19-93 (97)
160 2cpx_A Hypothetical protein FL 99.6 2.6E-15 9E-20 124.5 9.6 76 166-243 25-105 (115)
161 2xs2_A Deleted in azoospermia- 99.6 1.4E-15 4.7E-20 123.6 7.7 76 166-242 9-85 (102)
162 2dgu_A Heterogeneous nuclear r 99.6 4.9E-15 1.7E-19 120.7 10.9 72 166-243 11-83 (103)
163 1fj7_A Nucleolin RBD1, protein 99.6 4.4E-16 1.5E-20 126.3 4.3 77 166-243 17-95 (101)
164 2hgm_A HNRPF protein, heteroge 99.6 1.7E-15 5.8E-20 128.7 8.0 75 166-241 42-119 (126)
165 2lxi_A RNA-binding protein 10; 99.6 1.1E-15 3.8E-20 122.2 6.5 79 11-92 1-81 (91)
166 2cqh_A IGF-II mRNA-binding pro 99.6 2.1E-15 7.1E-20 120.4 8.1 73 166-243 8-83 (93)
167 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.5E-20 126.1 7.6 74 166-243 25-102 (112)
168 2kvi_A Nuclear polyadenylated 99.6 3.2E-15 1.1E-19 120.3 9.0 72 166-243 10-83 (96)
169 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.6E-15 1.2E-19 132.1 10.2 77 166-242 72-151 (165)
170 2e5g_A U6 snRNA-specific termi 99.6 7.4E-15 2.5E-19 117.6 11.0 75 166-243 8-82 (94)
171 3q2s_C Cleavage and polyadenyl 99.6 2.3E-15 7.8E-20 140.7 9.1 76 166-241 68-148 (229)
172 3nmr_A Cugbp ELAV-like family 99.6 4.9E-15 1.7E-19 130.4 10.7 144 166-322 3-162 (175)
173 3s7r_A Heterogeneous nuclear r 99.6 7.1E-15 2.4E-19 115.7 10.5 79 6-87 6-84 (87)
174 1wf1_A RNA-binding protein RAL 99.6 9.5E-15 3.3E-19 120.4 11.7 71 166-242 27-99 (110)
175 1fje_B Nucleolin RBD12, protei 99.6 4.4E-16 1.5E-20 137.8 3.7 139 166-355 13-152 (175)
176 2yh0_A Splicing factor U2AF 65 99.6 5.6E-15 1.9E-19 133.0 11.0 153 166-355 4-172 (198)
177 2hzc_A Splicing factor U2AF 65 99.6 6.8E-15 2.3E-19 115.6 10.0 70 166-239 6-86 (87)
178 3egn_A RNA-binding protein 40; 99.6 2.2E-15 7.6E-20 130.1 7.5 77 166-243 45-130 (143)
179 1x5p_A Negative elongation fac 99.6 2.2E-14 7.4E-19 115.5 12.9 72 166-243 15-87 (97)
180 2hgn_A Heterogeneous nuclear r 99.6 8.1E-16 2.8E-20 132.9 4.3 76 166-242 46-122 (139)
181 1wg1_A KIAA1579 protein, homol 99.6 4.2E-15 1.4E-19 117.6 8.1 73 166-243 5-78 (88)
182 2lkz_A RNA-binding protein 5; 99.6 3.4E-15 1.2E-19 120.6 7.2 84 6-92 4-93 (95)
183 1s79_A Lupus LA protein; RRM, 99.6 6.6E-15 2.3E-19 120.6 9.0 77 8-88 8-84 (103)
184 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1E-14 3.6E-19 114.0 9.0 80 7-89 3-82 (85)
185 2e5h_A Zinc finger CCHC-type a 99.6 1.6E-14 5.6E-19 115.2 10.3 82 6-90 11-92 (94)
186 2adc_A Polypyrimidine tract-bi 99.6 4.5E-15 1.5E-19 138.1 7.9 75 166-243 34-110 (229)
187 1whw_A Hypothetical protein ri 99.6 1.9E-14 6.5E-19 116.0 10.6 84 6-92 3-86 (99)
188 2fc8_A NCL protein; structure 99.6 1.7E-14 5.8E-19 117.0 10.1 75 166-243 15-92 (102)
189 3d2w_A TAR DNA-binding protein 99.5 2E-14 6.8E-19 114.4 10.2 70 166-241 11-82 (89)
190 3lqv_A PRE-mRNA branch site pr 99.5 5.2E-15 1.8E-19 122.7 7.1 78 7-90 4-81 (115)
191 2cq2_A Hypothetical protein LO 99.5 1.2E-14 4.3E-19 121.0 9.3 74 166-243 25-106 (114)
192 2dnz_A Probable RNA-binding pr 99.5 1.7E-14 6E-19 115.2 9.8 82 8-92 2-83 (95)
193 2f3j_A RNA and export factor b 99.5 1.1E-14 3.8E-19 130.8 9.5 78 166-243 88-167 (177)
194 2dgs_A DAZ-associated protein 99.5 3.2E-14 1.1E-18 114.7 11.3 82 7-92 6-87 (99)
195 2cpf_A RNA binding motif prote 99.5 1.7E-14 5.9E-19 116.1 9.6 85 8-92 2-86 (98)
196 3md1_A Nuclear and cytoplasmic 99.5 2E-14 6.9E-19 111.8 9.7 79 11-92 1-79 (83)
197 2cqc_A Arginine/serine-rich sp 99.5 2.3E-14 7.7E-19 114.5 10.1 81 8-91 12-92 (95)
198 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.4E-14 4.8E-19 113.8 8.7 80 8-90 3-82 (87)
199 2lcw_A RNA-binding protein FUS 99.3 4.5E-16 1.5E-20 129.7 0.0 77 166-242 7-94 (116)
200 2ywk_A Putative RNA-binding pr 99.5 2.1E-14 7E-19 114.8 9.6 79 8-90 13-91 (95)
201 3zzy_A Polypyrimidine tract-bi 99.5 3.1E-14 1.1E-18 121.3 11.1 74 167-243 29-106 (130)
202 2diu_A KIAA0430 protein; struc 99.5 3.3E-14 1.1E-18 113.6 10.2 68 168-243 11-84 (96)
203 1sjq_A Polypyrimidine tract-bi 99.5 1.2E-14 4.2E-19 119.3 7.9 78 6-92 11-90 (105)
204 3ucg_A Polyadenylate-binding p 99.5 3.2E-14 1.1E-18 112.2 10.1 76 10-88 5-80 (89)
205 2e44_A Insulin-like growth fac 99.5 1.9E-14 6.5E-19 115.4 8.8 75 166-242 15-91 (96)
206 2cq0_A Eukaryotic translation 99.5 2.3E-14 7.8E-19 116.5 9.4 82 8-92 12-93 (103)
207 2x1f_A MRNA 3'-END-processing 99.5 2.2E-14 7.4E-19 115.2 9.1 81 10-93 1-81 (96)
208 3beg_B Splicing factor, argini 99.5 1.1E-14 3.9E-19 121.3 7.6 71 166-241 16-92 (115)
209 2div_A TRNA selenocysteine ass 99.5 2E-14 6.7E-19 115.9 8.8 77 6-85 4-81 (99)
210 1qm9_A Polypyrimidine tract-bi 99.5 3.1E-15 1.1E-19 135.3 4.3 75 166-243 3-79 (198)
211 1sjr_A Polypyrimidine tract-bi 99.5 2.6E-14 9E-19 126.3 9.9 75 167-243 47-124 (164)
212 1x5t_A Splicing factor 3B subu 99.5 2.2E-14 7.5E-19 114.9 8.6 82 8-92 2-84 (96)
213 2dh8_A DAZ-associated protein 99.5 3.2E-14 1.1E-18 116.0 9.6 82 7-92 12-93 (105)
214 2voo_A Lupus LA protein; RNA-b 99.5 3.5E-14 1.2E-18 129.2 10.9 79 165-243 108-187 (193)
215 2dnm_A SRP46 splicing factor; 99.5 2.7E-14 9.1E-19 116.1 9.0 82 8-92 10-91 (103)
216 3r27_A HnRNP L, heterogeneous 99.5 2.3E-14 7.7E-19 116.7 8.4 77 7-92 17-95 (100)
217 3ns6_A Eukaryotic translation 99.5 9.4E-15 3.2E-19 118.7 6.2 79 9-90 4-89 (100)
218 2la6_A RNA-binding protein FUS 99.5 3.1E-14 1.1E-18 114.9 9.2 79 6-87 8-95 (99)
219 1x5u_A Splicing factor 3B subu 99.5 3.4E-14 1.2E-18 115.7 9.6 82 8-92 12-93 (105)
220 2rs2_A Musashi-1, RNA-binding 99.5 3.5E-14 1.2E-18 117.1 9.7 80 6-88 20-99 (109)
221 2do4_A Squamous cell carcinoma 99.5 4.4E-14 1.5E-18 114.2 10.0 81 8-92 14-94 (100)
222 2wbr_A GW182, gawky, LD47780P; 99.5 2.3E-14 8E-19 113.3 8.1 75 8-91 4-78 (89)
223 1x4h_A RNA-binding protein 28; 99.5 4.4E-14 1.5E-18 116.2 10.1 82 8-92 12-99 (111)
224 2jrs_A RNA-binding protein 39; 99.5 3.9E-14 1.3E-18 116.7 9.7 82 7-91 22-103 (108)
225 2dnh_A Bruno-like 5, RNA bindi 99.5 4.2E-14 1.4E-18 115.2 9.8 81 8-92 12-95 (105)
226 1wf0_A TDP-43, TAR DNA-binding 99.5 2.3E-14 7.8E-19 113.2 7.9 74 166-243 5-78 (88)
227 2cqd_A RNA-binding region cont 99.5 8.5E-14 2.9E-18 115.6 11.7 80 8-91 14-93 (116)
228 2dgo_A Cytotoxic granule-assoc 99.5 5.7E-14 1.9E-18 116.4 10.4 82 8-92 12-93 (115)
229 2cq3_A RNA-binding protein 9; 99.5 6.3E-14 2.2E-18 113.9 10.3 82 6-92 10-91 (103)
230 3p5t_L Cleavage and polyadenyl 99.5 1E-14 3.6E-19 115.8 5.5 75 12-89 2-79 (90)
231 1x4e_A RNA binding motif, sing 99.5 1.8E-14 6.1E-19 112.9 6.8 75 8-85 2-76 (85)
232 1wg5_A Heterogeneous nuclear r 99.5 6.3E-14 2.2E-18 114.5 10.3 78 8-89 12-90 (104)
233 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2.5E-14 8.7E-19 115.9 7.8 82 8-92 9-90 (102)
234 2cqi_A Nucleolysin TIAR; RNA r 99.5 5.6E-14 1.9E-18 114.1 9.9 80 8-92 12-91 (103)
235 2khc_A Testis-specific RNP-typ 99.5 5.2E-14 1.8E-18 117.2 9.9 79 8-89 37-115 (118)
236 3sde_A Paraspeckle component 1 99.5 3.7E-14 1.3E-18 134.5 10.1 135 166-317 22-158 (261)
237 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.7E-14 5.8E-19 110.7 6.3 73 12-87 1-73 (77)
238 2e5i_A Heterogeneous nuclear r 99.5 7.4E-14 2.5E-18 118.2 10.8 72 168-243 27-102 (124)
239 2cpz_A CUG triplet repeat RNA- 99.5 4.2E-14 1.4E-18 117.3 9.1 82 8-92 22-103 (115)
240 2fy1_A RNA-binding motif prote 99.5 4.6E-14 1.6E-18 117.8 9.3 82 7-92 3-84 (116)
241 1p27_B RNA-binding protein 8A; 99.5 5.3E-14 1.8E-18 114.8 9.4 79 9-90 21-99 (106)
242 2krb_A Eukaryotic translation 99.5 2.8E-14 9.5E-19 111.0 7.3 68 11-83 1-74 (81)
243 2dgv_A HnRNP M, heterogeneous 99.5 4.8E-14 1.6E-18 112.0 8.9 80 7-91 4-83 (92)
244 1wez_A HnRNP H', FTP-3, hetero 99.5 4.7E-14 1.6E-18 115.1 9.0 78 7-89 11-88 (102)
245 2d9p_A Polyadenylate-binding p 99.5 4.6E-14 1.6E-18 114.7 8.8 81 7-92 11-91 (103)
246 2err_A Ataxin-2-binding protei 99.5 4E-14 1.4E-18 116.7 8.6 82 5-91 23-104 (109)
247 2mss_A Protein (musashi1); RNA 99.5 2.9E-14 9.9E-19 109.0 7.1 72 13-87 1-72 (75)
248 2cph_A RNA binding motif prote 99.5 5.7E-14 2E-18 114.7 9.2 83 8-92 12-95 (107)
249 3ulh_A THO complex subunit 4; 99.5 6.1E-14 2.1E-18 114.6 9.3 78 8-89 26-103 (107)
250 1x5s_A Cold-inducible RNA-bind 99.5 3.2E-14 1.1E-18 115.3 7.5 78 8-88 9-87 (102)
251 2dgp_A Bruno-like 4, RNA bindi 99.5 4.3E-14 1.5E-18 115.3 8.2 83 7-92 9-94 (106)
252 2kxn_B Transformer-2 protein h 99.5 5.4E-14 1.8E-18 119.7 9.1 82 8-92 43-124 (129)
253 2j8a_A Histone-lysine N-methyl 99.5 4.3E-14 1.5E-18 119.3 8.3 75 167-241 3-94 (136)
254 4a8x_A RNA-binding protein wit 99.5 4.7E-14 1.6E-18 110.9 8.0 79 9-90 2-81 (88)
255 2dnl_A Cytoplasmic polyadenyla 99.5 3.8E-14 1.3E-18 117.7 7.9 71 166-239 8-84 (114)
256 2ek1_A RNA-binding protein 12; 99.5 2.6E-14 8.8E-19 114.2 6.5 79 8-89 12-90 (95)
257 2nlw_A Eukaryotic translation 99.5 8.1E-14 2.8E-18 114.0 9.6 80 8-92 12-98 (105)
258 1oo0_B CG8781-PA, drosophila Y 99.5 6.7E-14 2.3E-18 115.1 9.1 81 8-91 23-103 (110)
259 2do0_A HnRNP M, heterogeneous 99.5 9.6E-14 3.3E-18 114.8 9.8 81 8-92 12-92 (114)
260 2cpy_A RNA-binding protein 12; 99.5 4.5E-14 1.6E-18 117.3 7.8 79 8-91 12-91 (114)
261 2dng_A Eukaryotic translation 99.5 1.4E-13 4.8E-18 111.9 10.6 80 8-92 12-91 (103)
262 2dhg_A TRNA selenocysteine ass 99.5 6.8E-14 2.3E-18 113.8 8.6 81 8-92 6-88 (104)
263 3n9u_C Cleavage and polyadenyl 99.5 7E-14 2.4E-18 123.0 9.3 80 10-92 54-135 (156)
264 2hvz_A Splicing factor, argini 99.5 1.9E-14 6.4E-19 116.6 5.2 72 12-91 1-72 (101)
265 1u6f_A Tcubp1, RNA-binding pro 99.5 1.3E-13 4.6E-18 118.0 10.6 82 8-92 39-120 (139)
266 1p1t_A Cleavage stimulation fa 99.5 3.7E-14 1.3E-18 115.2 6.7 82 9-93 6-87 (104)
267 1iqt_A AUF1, heterogeneous nuc 99.5 2.6E-14 8.9E-19 109.1 5.3 72 13-87 1-72 (75)
268 2cqp_A RNA-binding protein 12; 99.5 5.1E-14 1.7E-18 113.3 7.2 81 8-91 12-92 (98)
269 1x4a_A Splicing factor, argini 99.5 1.6E-13 5.4E-18 112.7 10.2 79 8-92 19-97 (109)
270 2cpe_A RNA-binding protein EWS 99.5 8.6E-14 3E-18 115.0 8.7 83 7-92 11-101 (113)
271 2cq4_A RNA binding motif prote 99.5 1.1E-13 3.8E-18 114.6 9.3 75 11-89 25-99 (114)
272 1wi8_A EIF-4B, eukaryotic tran 99.5 1.8E-13 6.3E-18 111.4 10.3 80 8-92 12-92 (104)
273 2bz2_A Negative elongation fac 99.5 9.5E-14 3.3E-18 116.9 8.8 72 166-243 39-111 (121)
274 2ytc_A PRE-mRNA-splicing facto 99.5 1.3E-13 4.4E-18 107.9 8.8 74 8-90 9-83 (85)
275 2cpi_A CCR4-NOT transcription 99.5 9.9E-14 3.4E-18 114.7 8.6 85 8-93 12-100 (111)
276 2cq1_A PTB-like protein L; RRM 99.5 1.2E-13 4.2E-18 112.7 9.0 77 7-92 11-89 (101)
277 1wex_A Hypothetical protein (r 99.5 9.3E-14 3.2E-18 114.0 8.2 76 8-92 12-89 (104)
278 2db1_A Heterogeneous nuclear r 99.5 8.4E-14 2.9E-18 116.6 8.1 78 8-89 14-94 (118)
279 2dis_A Unnamed protein product 99.5 1E-13 3.6E-18 113.6 8.5 83 8-92 5-90 (109)
280 2dnq_A RNA-binding protein 4B; 99.5 1.7E-13 5.8E-18 108.6 9.4 75 7-92 4-78 (90)
281 2pe8_A Splicing factor 45; RRM 99.5 3.2E-13 1.1E-17 111.0 11.1 76 166-241 8-92 (105)
282 2cqg_A TDP-43, TAR DNA-binding 99.5 3.3E-13 1.1E-17 109.6 11.1 80 8-92 12-91 (103)
283 2jvr_A Nucleolar protein 3; RN 99.5 8.4E-14 2.9E-18 115.6 7.7 79 7-92 24-103 (111)
284 1why_A Hypothetical protein ri 99.5 1.7E-13 5.8E-18 110.1 9.3 77 7-92 13-91 (97)
285 2dgx_A KIAA0430 protein; RRM d 99.5 1.5E-13 5.1E-18 110.5 8.9 79 8-92 6-88 (96)
286 1x4b_A Heterogeneous nuclear r 99.5 1.7E-13 5.8E-18 113.8 9.5 78 11-92 27-104 (116)
287 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.9E-13 6.4E-18 116.8 10.1 79 8-89 60-138 (140)
288 3ex7_B RNA-binding protein 8A; 99.5 1.3E-13 4.4E-18 116.2 8.8 82 8-92 19-100 (126)
289 2ad9_A Polypyrimidine tract-bi 99.5 9E-14 3.1E-18 116.8 7.5 77 7-92 27-105 (119)
290 2kt5_A RNA and export factor-b 99.5 1.7E-13 5.9E-18 115.2 9.2 81 8-92 32-112 (124)
291 2dgw_A Probable RNA-binding pr 99.5 2.6E-13 8.9E-18 107.6 9.7 79 7-91 6-84 (91)
292 2la4_A Nuclear and cytoplasmic 99.5 1.2E-13 4.1E-18 111.8 7.8 76 7-91 23-98 (101)
293 2hgl_A HNRPF protein, heteroge 99.5 1.1E-13 3.8E-18 119.0 7.8 77 8-88 41-120 (136)
294 2m2b_A RNA-binding protein 10; 99.5 5.6E-14 1.9E-18 119.6 5.9 81 8-92 20-106 (131)
295 1wel_A RNA-binding protein 12; 99.5 6.6E-14 2.2E-18 118.0 6.3 79 8-89 22-100 (124)
296 2xnq_A Nuclear polyadenylated 99.4 2.3E-13 7.7E-18 109.9 9.2 73 8-91 19-92 (97)
297 1x4d_A Matrin 3; structural ge 99.4 6.6E-14 2.3E-18 114.5 6.0 76 8-92 12-90 (102)
298 2hgm_A HNRPF protein, heteroge 99.4 1.8E-13 6.3E-18 116.1 8.9 77 8-89 39-117 (126)
299 2dnn_A RNA-binding protein 12; 99.4 1.8E-13 6.1E-18 113.3 8.5 74 11-89 16-89 (109)
300 2cpj_A Non-POU domain-containi 99.4 1.9E-13 6.4E-18 110.3 7.9 76 8-92 12-87 (99)
301 2xs2_A Deleted in azoospermia- 99.4 1.7E-13 5.9E-18 111.1 7.7 75 8-87 6-80 (102)
302 2dha_A FLJ20171 protein; RRM d 99.4 9.8E-14 3.3E-18 117.3 6.4 75 9-87 21-99 (123)
303 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.1E-13 3.8E-18 112.1 6.5 76 8-86 16-91 (100)
304 2ki2_A SS-DNA binding protein 99.4 6.2E-14 2.1E-18 111.0 4.7 77 12-92 2-78 (90)
305 1h2v_Z 20 kDa nuclear CAP bind 99.4 3E-13 1E-17 118.3 9.6 83 8-93 36-118 (156)
306 2jwn_A Embryonic polyadenylate 99.4 2.8E-13 9.6E-18 113.7 9.0 78 11-92 36-113 (124)
307 2lmi_A GRSF-1, G-rich sequence 99.4 1E-13 3.4E-18 113.9 6.0 76 8-87 8-86 (107)
308 2a3j_A U1 small nuclear ribonu 99.4 2.8E-13 9.6E-18 115.1 8.9 80 8-93 26-109 (127)
309 2kn4_A Immunoglobulin G-bindin 99.4 3.5E-13 1.2E-17 117.9 9.6 82 8-92 67-148 (158)
310 2dgt_A RNA-binding protein 30; 99.4 4.3E-13 1.5E-17 106.7 9.3 75 7-92 6-80 (92)
311 1x4c_A Splicing factor, argini 99.4 5E-13 1.7E-17 109.8 9.9 75 8-92 12-91 (108)
312 1x5o_A RNA binding motif, sing 99.4 3.8E-13 1.3E-17 111.2 9.2 70 8-81 22-91 (114)
313 3d2w_A TAR DNA-binding protein 99.4 4.1E-13 1.4E-17 106.7 8.6 62 3-72 3-64 (89)
314 2dnp_A RNA-binding protein 14; 99.4 2.8E-13 9.7E-18 107.3 7.7 75 7-92 5-79 (90)
315 2dgu_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 109.8 8.1 74 8-92 8-81 (103)
316 2cpd_A Apobec-1 stimulating pr 99.4 7.4E-13 2.5E-17 106.8 10.2 75 7-92 11-87 (99)
317 1whx_A Hypothetical protein ri 99.4 2E-13 6.9E-18 113.0 6.7 75 8-91 7-81 (111)
318 2fc9_A NCL protein; structure 99.4 5E-13 1.7E-17 108.1 8.9 78 8-92 12-89 (101)
319 2kvi_A Nuclear polyadenylated 99.4 1.8E-13 6.3E-18 109.9 6.2 72 7-89 6-79 (96)
320 1x4g_A Nucleolysin TIAR; struc 99.4 4E-13 1.4E-17 110.4 8.3 77 7-92 21-97 (109)
321 1rk8_A CG8781-PA, CG8781-PA pr 99.4 5.5E-13 1.9E-17 117.9 9.7 82 8-92 69-150 (165)
322 3q2s_C Cleavage and polyadenyl 99.4 4.2E-13 1.4E-17 125.3 9.3 80 10-92 67-148 (229)
323 2dnl_A Cytoplasmic polyadenyla 99.4 3.5E-13 1.2E-17 111.8 7.8 68 7-76 4-72 (114)
324 2hzc_A Splicing factor U2AF 65 99.4 4.7E-13 1.6E-17 105.0 8.1 71 8-87 3-84 (87)
325 1nu4_A U1A RNA binding domain; 99.4 2.8E-13 9.7E-18 108.6 6.9 81 7-93 4-88 (97)
326 1x4f_A Matrin 3; structural ge 99.4 1.6E-13 5.5E-18 114.0 5.5 75 8-91 22-99 (112)
327 2jvo_A Nucleolar protein 3; nu 99.4 5.4E-13 1.8E-17 109.9 8.6 75 7-92 27-101 (108)
328 2lea_A Serine/arginine-rich sp 99.4 2.3E-13 7.8E-18 116.7 6.5 82 8-92 44-125 (135)
329 2e5j_A Methenyltetrahydrofolat 99.4 3E-13 1E-17 108.8 6.5 77 8-92 16-92 (97)
330 1fjc_A Nucleolin RBD2, protein 99.4 5.8E-13 2E-17 106.6 7.9 77 8-92 13-89 (96)
331 1fj7_A Nucleolin RBD1, protein 99.4 1.2E-13 3.9E-18 111.9 3.7 81 7-92 13-93 (101)
332 2hgn_A Heterogeneous nuclear r 99.4 2E-13 6.9E-18 117.8 5.3 77 8-89 43-119 (139)
333 2e5g_A U6 snRNA-specific termi 99.4 1.7E-12 5.9E-17 103.7 10.2 74 8-90 5-78 (94)
334 2cqh_A IGF-II mRNA-binding pro 99.4 3.3E-13 1.1E-17 107.5 5.8 77 6-92 3-81 (93)
335 3u1l_A PRE-mRNA-splicing facto 99.4 6.5E-13 2.2E-17 124.6 8.7 73 166-242 134-228 (240)
336 1wg1_A KIAA1579 protein, homol 99.4 6.4E-13 2.2E-17 105.0 6.8 75 8-92 2-76 (88)
337 2cpx_A Hypothetical protein FL 99.4 7.1E-13 2.4E-17 109.7 7.2 78 8-92 22-103 (115)
338 1x5p_A Negative elongation fac 99.4 2.8E-12 9.5E-17 103.0 10.0 74 8-92 12-85 (97)
339 1wf0_A TDP-43, TAR DNA-binding 99.4 1E-12 3.5E-17 103.6 7.2 75 8-92 2-76 (88)
340 2f3j_A RNA and export factor b 99.4 1E-12 3.5E-17 117.9 8.1 81 7-91 84-164 (177)
341 1wf1_A RNA-binding protein RAL 99.4 1.1E-12 3.9E-17 107.8 7.7 73 9-92 25-98 (110)
342 2dit_A HIV TAT specific factor 99.4 4.2E-12 1.4E-16 105.0 11.1 75 166-242 15-101 (112)
343 2cq2_A Hypothetical protein LO 99.3 8.4E-13 2.9E-17 109.9 6.5 63 8-79 22-86 (114)
344 2i2y_A Fusion protein consists 99.3 1.4E-12 4.7E-17 113.3 8.0 76 8-91 70-145 (150)
345 2voo_A Lupus LA protein; RNA-b 99.3 2.4E-12 8.3E-17 117.0 10.0 75 11-89 109-183 (193)
346 1sjr_A Polypyrimidine tract-bi 99.3 2.7E-12 9.4E-17 113.3 9.1 78 8-92 43-122 (164)
347 1jmt_A Splicing factor U2AF 35 99.3 5.2E-13 1.8E-17 109.4 4.0 70 171-240 20-103 (104)
348 2lcw_A RNA-binding protein FUS 99.0 1.2E-13 4.2E-18 114.8 0.0 82 8-92 4-93 (116)
349 2e44_A Insulin-like growth fac 99.3 2.5E-12 8.4E-17 102.9 7.6 78 8-92 12-90 (96)
350 3egn_A RNA-binding protein 40; 99.3 3.1E-13 1.1E-17 116.5 2.0 80 8-93 42-129 (143)
351 2fc8_A NCL protein; structure 99.3 4.7E-12 1.6E-16 102.4 8.6 79 8-92 12-90 (102)
352 3v4m_A Splicing factor U2AF 65 99.3 5.8E-12 2E-16 103.3 9.0 76 166-241 5-95 (105)
353 3pgw_S U1-70K; protein-RNA com 99.3 4.4E-12 1.5E-16 129.2 9.5 82 9-93 100-181 (437)
354 3beg_B Splicing factor, argini 99.3 2.7E-12 9.2E-17 106.8 5.9 66 9-84 14-80 (115)
355 3zzy_A Polypyrimidine tract-bi 99.3 1.1E-11 3.7E-16 105.6 9.1 77 8-92 25-104 (130)
356 2e5i_A Heterogeneous nuclear r 99.3 1.2E-11 4.2E-16 104.5 9.4 76 8-92 22-100 (124)
357 2j8a_A Histone-lysine N-methyl 99.3 1.1E-11 3.9E-16 104.5 8.2 76 12-90 3-92 (136)
358 2bz2_A Negative elongation fac 99.2 9.5E-12 3.3E-16 104.6 7.0 74 8-92 36-109 (121)
359 2pe8_A Splicing factor 45; RRM 99.2 2.2E-11 7.6E-16 99.9 8.9 84 7-92 4-92 (105)
360 3ue2_A Poly(U)-binding-splicin 99.2 3E-11 1E-15 101.3 9.3 76 166-241 20-107 (118)
361 3u1l_A PRE-mRNA-splicing facto 99.2 1.1E-11 3.9E-16 116.1 7.2 77 8-93 131-228 (240)
362 2diu_A KIAA0430 protein; struc 99.2 2.2E-11 7.4E-16 97.3 7.6 69 8-89 5-80 (96)
363 3tht_A Alkylated DNA repair pr 99.2 4.1E-11 1.4E-15 118.0 10.4 73 165-241 17-97 (345)
364 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.3E-10 7.9E-15 93.0 12.6 63 176-243 27-90 (100)
365 3s6e_A RNA-binding protein 39; 99.1 2E-10 7E-15 95.5 10.3 74 166-241 7-91 (114)
366 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 4.2E-15 95.4 7.3 83 9-92 3-95 (105)
367 2dit_A HIV TAT specific factor 99.1 2E-10 6.9E-15 94.8 8.2 78 8-92 12-100 (112)
368 3tht_A Alkylated DNA repair pr 99.0 2.4E-10 8.3E-15 112.5 7.2 63 8-79 15-79 (345)
369 3ue2_A Poly(U)-binding-splicin 99.0 9.4E-10 3.2E-14 92.1 7.6 83 9-92 18-107 (118)
370 1jmt_A Splicing factor U2AF 35 98.9 3.1E-10 1.1E-14 92.7 3.3 70 16-89 20-101 (104)
371 2dnr_A Synaptojanin-1; RRM dom 98.9 3.7E-09 1.3E-13 83.7 9.1 71 166-242 7-85 (91)
372 2d9o_A DNAJ (HSP40) homolog, s 98.9 6.8E-09 2.3E-13 84.2 9.7 75 8-92 7-88 (100)
373 1owx_A Lupus LA protein, SS-B, 98.8 1.9E-08 6.7E-13 84.2 9.2 72 166-241 18-94 (121)
374 3s6e_A RNA-binding protein 39; 98.8 1.3E-08 4.3E-13 84.6 7.7 80 6-92 2-91 (114)
375 1ufw_A Synaptojanin 2; RNP dom 98.7 2.2E-08 7.5E-13 79.6 6.8 70 166-241 15-93 (95)
376 1owx_A Lupus LA protein, SS-B, 98.6 8E-08 2.7E-12 80.4 7.8 77 8-93 15-95 (121)
377 3dxb_A Thioredoxin N-terminall 98.6 8E-08 2.7E-12 88.4 7.5 64 178-241 141-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.2 3.9E-06 1.3E-10 66.3 8.1 71 8-89 4-82 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.1 1E-05 3.5E-10 65.7 8.8 71 165-239 20-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.0 7.3E-06 2.5E-10 75.1 7.5 83 10-92 123-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.0 6.6E-06 2.3E-10 65.3 6.1 71 8-89 12-91 (95)
382 2dhx_A Poly (ADP-ribose) polym 97.5 0.00092 3.2E-08 53.7 10.4 70 166-241 8-82 (104)
383 2dhx_A Poly (ADP-ribose) polym 97.4 0.001 3.5E-08 53.4 9.9 75 7-92 4-83 (104)
384 1wwh_A Nucleoporin 35, nucleop 97.2 0.0021 7.2E-08 53.1 9.6 71 166-241 24-95 (119)
385 1wey_A Calcipressin 1; structu 97.1 0.0011 3.8E-08 53.4 7.1 73 166-242 5-83 (104)
386 2l9w_A U4/U6 snRNA-associated- 97.0 0.0013 4.6E-08 53.3 6.7 71 10-89 20-96 (117)
387 3p3d_A Nucleoporin 53; structu 96.8 0.0013 4.4E-08 55.2 5.0 75 166-241 7-97 (132)
388 1uw4_A UPF3X; nonsense mediate 96.5 0.0093 3.2E-07 47.0 7.8 70 12-83 2-73 (91)
389 1whv_A Poly(A)-specific ribonu 96.4 0.0044 1.5E-07 49.2 5.6 57 8-76 13-69 (100)
390 1uw4_A UPF3X; nonsense mediate 96.3 0.017 5.9E-07 45.4 8.4 67 167-233 2-73 (91)
391 3ctr_A Poly(A)-specific ribonu 96.2 0.0053 1.8E-07 48.9 5.0 54 11-76 6-59 (101)
392 1wwh_A Nucleoporin 35, nucleop 96.1 0.019 6.4E-07 47.4 8.0 75 8-92 21-96 (119)
393 3pq1_A Poly(A) RNA polymerase; 95.8 0.0054 1.8E-07 62.3 3.8 66 163-232 50-115 (464)
394 1whv_A Poly(A)-specific ribonu 95.6 0.032 1.1E-06 44.3 6.9 51 167-224 17-67 (100)
395 3ctr_A Poly(A)-specific ribonu 95.3 0.023 8E-07 45.2 5.2 53 168-226 7-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 95.2 0.011 3.7E-07 60.1 3.8 57 11-76 53-109 (464)
397 1wey_A Calcipressin 1; structu 94.9 0.06 2.1E-06 43.2 6.6 68 11-87 5-78 (104)
398 2l08_A Regulator of nonsense t 94.2 0.049 1.7E-06 43.2 4.5 72 10-83 8-81 (97)
399 2l08_A Regulator of nonsense t 93.2 0.072 2.5E-06 42.3 3.8 68 166-233 9-81 (97)
400 3p3d_A Nucleoporin 53; structu 88.9 0.61 2.1E-05 39.0 5.4 77 13-91 9-97 (132)
401 3d45_A Poly(A)-specific ribonu 77.2 3.6 0.00012 42.1 6.5 55 10-76 439-493 (507)
402 3d45_A Poly(A)-specific ribonu 70.8 10 0.00034 38.7 8.0 54 166-226 440-494 (507)
403 4e8u_A Putative uncharacterize 39.6 70 0.0024 27.7 6.7 56 168-224 14-81 (172)
404 4e8u_A Putative uncharacterize 28.9 87 0.003 27.1 5.5 57 13-75 14-82 (172)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=1.6e-31 Score=247.07 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=137.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.+||||+|||+++|+++|+++|++||+|.+|+|. . +..+++++|||||+|.+.++|+.|+..+|...+.+..+.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-~--d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC-R--DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-E--CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEe-c--ccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 4467899999999999999999999999999999994 3 335688999999999999999999976665555444433
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
+.+....... .....+
T Consensus 89 ~~~~~~~~~~----------------------------------------------------------------~~~~~~ 104 (213)
T 4f02_A 89 IMWSQRDPSL----------------------------------------------------------------RKSGVG 104 (213)
T ss_dssp EEECCCCTHH----------------------------------------------------------------HHHCTT
T ss_pred cccccccccc----------------------------------------------------------------cccccc
Confidence 3322211000 001146
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+|||+|||+++|+++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..|+|++|+|.+++
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 899999999999999999999999999999988877789999999999999999998 99999999999999986
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-30 Score=225.55 Aligned_cols=162 Identities=15% Similarity=0.252 Sum_probs=132.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
|+|||+|||+++|+++|+++|+.||+|.+|++.. +. .++++|||||+|.+.++|..|+..+++..+++..+.+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~-~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI-DK---NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEEC-CC---C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEE-CC---CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 6899999999999999999999999999999943 32 3678999999999999999999554444444433333322
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559 92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA 171 (405)
Q Consensus 92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV 171 (405)
.... .......++|||
T Consensus 77 ~~~~----------------------------------------------------------------~~~~~~~~~l~v 92 (166)
T 3md3_A 77 FQSQ----------------------------------------------------------------QSSSDDTFNLFV 92 (166)
T ss_dssp CCCC----------------------------------------------------------------CCCCTTCEEEEE
T ss_pred CCCC----------------------------------------------------------------CCCCCCCceEEE
Confidence 2100 000111679999
Q ss_pred eCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 172 INIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+|||+++++++|+++|++||.|.++.+..+ ++.++|||||+|.+.++|.+|+. |||..++|++|+|.+++
T Consensus 93 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 93 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp ESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999999755 67889999999999999999998 99999999999999975
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=7.8e-30 Score=230.66 Aligned_cols=171 Identities=15% Similarity=0.230 Sum_probs=139.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+...++|||+|||+++|+++|+++|+.||+|.+|++.. +..++.++|||||+|.+.++|..|+..++..+.++.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMR---DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---cCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 56789999999999999999999999999999999944 234678999999999999999999988665555555554
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
.......... .+ ......+
T Consensus 87 ~~~~~~~~~~-----------------------------------------~~--------------------~~~~~~~ 105 (196)
T 1l3k_A 87 KRAVSREDSQ-----------------------------------------RP--------------------GAHLTVK 105 (196)
T ss_dssp EECCC------------------------------------------------------------------------CCS
T ss_pred ecccCccccc-----------------------------------------cc--------------------ccCCCcc
Confidence 4322110000 00 0001157
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
+|||+|||+++|+++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+..+|..+.|+.|.|.++..
T Consensus 106 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 9999999999999999999999999999999765 67889999999999999999999889999999999999863
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.1e-29 Score=223.98 Aligned_cols=162 Identities=15% Similarity=0.194 Sum_probs=134.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
+.++|||+|||+++|+++|+++|+.||+|.+|++... ..++.++|||||+|.+.++|+.|+..++...+++..+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD---YKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE---TTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe---CCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 5789999999999999999999999999999999443 2467889999999999999999997544444444443333
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559 90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL 169 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv 169 (405)
+.... ......++|
T Consensus 79 ~~~~~------------------------------------------------------------------~~~~~~~~l 92 (168)
T 1b7f_A 79 YARPG------------------------------------------------------------------GESIKDTNL 92 (168)
T ss_dssp ECCCC------------------------------------------------------------------SSTTTTCEE
T ss_pred ecCCC------------------------------------------------------------------cccCCCCCE
Confidence 32210 000115799
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeec
Q psy14559 170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHS 240 (405)
Q Consensus 170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a 240 (405)
||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.| ++|+|.+|
T Consensus 93 ~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 93 YVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999999999765 67789999999999999999999 99999988 99999875
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=4.5e-30 Score=226.42 Aligned_cols=161 Identities=14% Similarity=0.246 Sum_probs=133.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
+.++|||+|||+++|+++|+++|+.||+|.+|++. . +..++.++|||||+|.+.++|..|+.. ...+.++.+ .+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i-~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIM-K--DPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVI-DPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECC-C--CTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEEC-CCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-E--CCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEc-ccc
Confidence 57899999999999999999999999999999993 3 334688999999999999999999974 222222222 111
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559 90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL 169 (405)
Q Consensus 90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv 169 (405)
+... .......++|
T Consensus 77 ~~~~------------------------------------------------------------------~~~~~~~~~l 90 (167)
T 2cjk_A 77 RAIP------------------------------------------------------------------RDEQDKTGKI 90 (167)
T ss_dssp ECCC------------------------------------------------------------------HHHHHHCEEE
T ss_pred cccc------------------------------------------------------------------hhhccCCCeE
Confidence 1110 0001125689
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
||+|||+++++++|+++|++||.|.++.+..+ ++.++|||||+|.+.++|.+|++++|..++|++|+|.++.
T Consensus 91 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 91 FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp EEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred EECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 99999999999999999999999999999765 6789999999999999999999999999999999999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=4.5e-29 Score=229.07 Aligned_cols=175 Identities=12% Similarity=0.183 Sum_probs=137.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT 88 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv 88 (405)
..++|||+|||+++|+++|+++|+.||+|.+|++.. +..++.++|||||+|.+.++|..|+.. ++..+.++.+.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v- 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV- 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE-
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE-
Confidence 358999999999999999999999999999999943 234578899999999999999999984 444444544444
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
.+............. ........++
T Consensus 103 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~ 127 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQ-------------------------------------------------------LAEEARAFNR 127 (216)
T ss_dssp ECCSCCGGGHHHHHH-------------------------------------------------------HHHHHTTSCE
T ss_pred ecCCCccccchhhhh-------------------------------------------------------hhcccCCCcE
Confidence 332221100000000 0001112679
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
|||+|||+++++++|+++|++||.|.++++..+ ++.++|||||+|.+.++|.+|+. |||..|+|+.|+|.++...
T Consensus 128 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 128 IYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred EEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 999999999999999999999999999999765 67889999999999999999999 9999999999999999755
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.6e-29 Score=220.68 Aligned_cols=161 Identities=17% Similarity=0.269 Sum_probs=132.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT 88 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv 88 (405)
+.++|||+|||+++|+++|+++|+.||+|.++++... ..+++++|||||+|.+.++|..|+.. ++..+.++.+.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v- 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD---KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV- 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE-
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE-
Confidence 3589999999999999999999999999999999543 34688999999999999999999975 444444444433
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
.+.... ......++
T Consensus 77 ~~~~~~------------------------------------------------------------------~~~~~~~~ 90 (167)
T 1fxl_A 77 SYARPS------------------------------------------------------------------SASIRDAN 90 (167)
T ss_dssp EECCCC------------------------------------------------------------------CGGGTTCE
T ss_pred EecCCC------------------------------------------------------------------cccCCCCc
Confidence 322110 00011578
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee--EEEeec
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT--LQMFHS 240 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~--i~V~~a 240 (405)
|||+|||+++++++|+++|++||.|.++++..+ ++.++|||||+|.+.++|.+|+. |||..+.|+. |+|.+|
T Consensus 91 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 91 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999999999999765 67789999999999999999999 9999999975 787764
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=2e-29 Score=223.34 Aligned_cols=167 Identities=16% Similarity=0.236 Sum_probs=129.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeEEe
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALVVT 88 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~vv 88 (405)
+.++|||+|||+++|+++|+++|+.||+|.+|++.. +.....++++|||||+|.+.++|+.|++.++ ..+.++....+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR-DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE-ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe-cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 578999999999999999999999999999999943 3321122789999999999999999996444 33332211100
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
.... ..+ ........++
T Consensus 81 ~~~~---------------------------------------------~~~------------------~~~~~~~~~~ 97 (175)
T 3nmr_A 81 QMKP---------------------------------------------ADS------------------EKNNAVEDRK 97 (175)
T ss_dssp EEEE---------------------------------------------CGG------------------GCCSCGGGSE
T ss_pred EEcc---------------------------------------------ccc------------------cccccCCCCe
Confidence 0000 000 0000112679
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeC---CeeEEEeec
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLK---GKTLQMFHS 240 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~~i~V~~a 240 (405)
|||+|||+++|+++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+. |++|.|.++
T Consensus 98 l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 999999999999999999999999999999765 67789999999999999999998 9998776 499999986
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=9.6e-29 Score=218.91 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=130.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYL----G-------KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN 77 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~----G-------~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n 77 (405)
.+.++|||+|||+++|+++|+++|+.| | .|.++++ +.++|||||+|.+.++|..|+.+++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---------~~~~g~afV~f~~~~~A~~A~~~~~ 72 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAMAFDG 72 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---------ETTTTEEEEEESSHHHHHHHGGGTT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---------cCCCCEEEEEeCCHHHHHHHHHhCC
Confidence 367999999999999999999999999 7 7888877 2358999999999999999996555
Q ss_pred CccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCC
Q psy14559 78 TVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITY 157 (405)
Q Consensus 78 ~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~ 157 (405)
..+.++.+.+.. ....
T Consensus 73 ~~~~g~~i~v~~-~~~~--------------------------------------------------------------- 88 (172)
T 2g4b_A 73 IIFQGQSLKIRR-PHDY--------------------------------------------------------------- 88 (172)
T ss_dssp CEETTEECEEEC-CSSC---------------------------------------------------------------
T ss_pred cEecCceeeecC-Cccc---------------------------------------------------------------
Confidence 555555444322 1100
Q ss_pred CCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559 158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234 (405)
Q Consensus 158 ~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~ 234 (405)
......++|||+|||+++++++|+++|++||.|.++.+..+ ++.++|||||+|.+.++|.+|+. |||..++|++
T Consensus 89 ---~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 89 ---QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp ---CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred ---CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 00001578999999999999999999999999999999766 67889999999999999999998 9999999999
Q ss_pred EEEeecc
Q psy14559 235 LQMFHST 241 (405)
Q Consensus 235 i~V~~a~ 241 (405)
|.|.+|.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999863
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.2e-28 Score=237.59 Aligned_cols=224 Identities=16% Similarity=0.190 Sum_probs=162.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++... . ..++|||||+|.+.++|..|+.+++..+.++.+.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS-L----KKNFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEEC-T----TSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C----CCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 567899999999999999999999999999999999543 2 22589999999999999999986555554544433
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
.. . ..+
T Consensus 113 ~~-~-------------------------------------------------------------------------~~~ 118 (292)
T 2ghp_A 113 SH-L-------------------------------------------------------------------------TEC 118 (292)
T ss_dssp EE-C-------------------------------------------------------------------------CSC
T ss_pred EE-C-------------------------------------------------------------------------CCC
Confidence 21 0 057
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~ 244 (405)
+|||+|||+++++++|+++|++|| .|.+|.++.+ .+.++|||||+|.+.++|..|+. |||..+.|++|.|.++...
T Consensus 119 ~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~- 197 (292)
T 2ghp_A 119 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL- 197 (292)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC-
Confidence 999999999999999999999999 9999999765 56789999999999999999999 9999999999999987621
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeee-hhhHHHhhhCCCcceee
Q psy14559 245 QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVD-VALDLALEIGDDLEVVV 323 (405)
Q Consensus 245 ~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d-~~~~~al~~~~~~~~~~ 323 (405)
.... +. .........+.+..+..+ ..-+.. .-..
T Consensus 198 ----~~~~----~~------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l-------~~~F 232 (292)
T 2ghp_A 198 ----EKSK----RT------------------------------DSATLEGREIMIRNLSTELLDENLL-------RESF 232 (292)
T ss_dssp -----------------------------------------------CCTTTEEEEEEECTTTCCHHHH-------HHHH
T ss_pred ----cccc----cc------------------------------cccCCCCceEEEECCCcccCCHHHH-------HHHH
Confidence 1110 00 011234455666676666 442222 2233
Q ss_pred eeeccccccccc------cccceEEEEEecCcccccccC
Q psy14559 324 RDVGHVREEDQD------HVVDVLCLVIVRDPHVARDVH 356 (405)
Q Consensus 324 ~~~g~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 356 (405)
..+|.|..+.-- ...-|.|.|.|.+++.|...-
T Consensus 233 ~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 233 EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 455666653222 445689999999999998654
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6.4e-28 Score=231.52 Aligned_cols=221 Identities=11% Similarity=0.155 Sum_probs=161.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
.+.++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|..|+...|+..+++..+.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 89 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV 89 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEE
Confidence 3568999999999999999999999999 999988 345899999999999999999755444343333222
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
.+.. ..++
T Consensus 90 ~~~~------------------------------------------------------------------------~~~~ 97 (284)
T 3smz_A 90 QLQP------------------------------------------------------------------------TDAL 97 (284)
T ss_dssp EECC------------------------------------------------------------------------CSCE
T ss_pred EecC------------------------------------------------------------------------CCCE
Confidence 2100 0568
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCCC
Q psy14559 169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSIQ 245 (405)
Q Consensus 169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~~ 245 (405)
|||+|||+++|+++|+++|++||.|.++.++.+ +|.++|||||+|.+.++|..|+. |||..+.|++|.|.++.....
T Consensus 98 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999998755 67889999999999999999997 999999999999999864422
Q ss_pred CCCCC----------ChH-HHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhh
Q psy14559 246 KPEAK----------SNE-AAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALE 314 (405)
Q Consensus 246 ~p~~~----------~~~-~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~ 314 (405)
.+... +.. ....++.+. ++.-.......+..+. .+ ...|++++.|.....+++|++
T Consensus 178 ~~~~~~~~~l~v~nlp~~~~~~~~l~~~----------f~~~G~i~~v~i~~~~-~g--~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 178 TPALLHSRCLCVDRLPPGFNDVDALCRA----------LSAVHSPTFCQLACGQ-DG--QLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp CTTTTSCSEEEEECCCTTCCCHHHHHHH----------TCSSSCCSEEEEEECS-SC--CEEEEEEEECSSHHHHHHHHH
T ss_pred CcccCCccEEEEecCCcccCCHHHHHHH----------hhCCCCeEEEEEEECC-CC--CcccEEEEEeCCHHHHHHHHH
Confidence 21110 111 122333222 2211111111223332 23 345677777777788899999
Q ss_pred hCCCcceeee
Q psy14559 315 IGDDLEVVVR 324 (405)
Q Consensus 315 ~~~~~~~~~~ 324 (405)
..++..+.++
T Consensus 245 ~l~g~~~~g~ 254 (284)
T 3smz_A 245 QADGLSLGGS 254 (284)
T ss_dssp HHTTCEETTE
T ss_pred HhCCCccCCe
Confidence 8887777554
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.2e-27 Score=216.56 Aligned_cols=178 Identities=16% Similarity=0.246 Sum_probs=133.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYL----G-------KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN 77 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~----G-------~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n 77 (405)
...++|||+|||+++|+++|+++|+.| | .|.++.+ +.++|||||+|.+.++|+.|+.+++
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------~~~~g~afV~F~~~~~A~~Al~l~g 72 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAMAFDG 72 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------ETTTTEEEEEESCSHHHHHHGGGTT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------cCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 357999999999999999999999999 5 6677666 3468999999999999999996555
Q ss_pred CccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCC
Q psy14559 78 TVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITY 157 (405)
Q Consensus 78 ~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~ 157 (405)
..+.++.+.+ .+.....+.. +....+ ....+. .
T Consensus 73 ~~~~g~~i~v-~~~~~~~~~~---------------~~~~~~------------------------~~~~~~-------~ 105 (198)
T 2yh0_A 73 IIFQGQSLKI-RRPHDYQPLP---------------GMSENP------------------------SVYVPG-------V 105 (198)
T ss_dssp EEETTEEEEE-ECCCCCCCCC---------------CSSSCS------------------------SCCCTT-------S
T ss_pred CEEcCceEEE-eCCCCCCCCC---------------CCcCCC------------------------cCCCCC-------C
Confidence 5555554444 4333210000 000000 000000 0
Q ss_pred CCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559 158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234 (405)
Q Consensus 158 ~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~ 234 (405)
.........++|||+|||+++++++|+++|++||.|.++.+..+ ++.++|||||+|.+.++|.+|+. |||..++|+.
T Consensus 106 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 106 VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 00111123689999999999999999999999999999999766 67889999999999999999999 9999999999
Q ss_pred EEEeeccC
Q psy14559 235 LQMFHSTQ 242 (405)
Q Consensus 235 i~V~~a~~ 242 (405)
|+|.+++.
T Consensus 186 l~v~~a~~ 193 (198)
T 2yh0_A 186 LLVQRASV 193 (198)
T ss_dssp CEEEESCC
T ss_pred EEEEECCC
Confidence 99999873
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=5.2e-27 Score=224.92 Aligned_cols=229 Identities=15% Similarity=0.231 Sum_probs=139.1
Q ss_pred cccCCCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559 4 DTVAPVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV 79 (405)
Q Consensus 4 ~~~~~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~ 79 (405)
.+....++++|||+|||+++|+++|+ ++|+.||.|.+|++.. +++++|||||+|.+.++|..|++.+|+.
T Consensus 2 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 2 AVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 34456789999999999999999977 8999999999999832 4678999999999999999999655555
Q ss_pred cccceeEEeecCCCCCc----------hHHHHH-------------HHHhccC------CCCCCC-CCCCCccccc----
Q psy14559 80 FIDRALVVTPYNSGEIP----------DEQRAL-------------EIAAQQQ------GPNSGE-PKLPAHVTNQ---- 125 (405)
Q Consensus 80 ~~~~~~~vv~~~~~~~~----------~e~ka~-------------~l~~~~~------g~~~~~-~~~~~~~~~~---- 125 (405)
.+++..+.+.+...... ...+.. ....... +..++. ...++.....
T Consensus 76 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
T 3pgw_A 76 PFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155 (282)
T ss_pred eeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccc
Confidence 44444444444332110 000000 0000000 000000 0000000000
Q ss_pred -ccCCCCCcccccC--CcccccC-----CCCCCCCCCCC---CCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCee
Q psy14559 126 -IEGVPPNQVISTH--DPVLVQH-----GLPQYPPLPIT---YDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVN 194 (405)
Q Consensus 126 -~~~~~~~~~~~~~--dp~~~~~-----~~~~~p~~~~~---~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~ 194 (405)
..+.......... .+..... ........+.. ..........++|||+|||+++++++|+++|++||.|.
T Consensus 156 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 156 HMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred cCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence 0000000000000 0000000 00000000000 00111222368999999999999999999999999999
Q ss_pred EEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeecc
Q psy14559 195 YIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQMFHST 241 (405)
Q Consensus 195 ~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~V~~a~ 241 (405)
+|++..+ .+|||||+|.+.++|.+|+. |||..+. |+.|+|.+++
T Consensus 236 ~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 236 EVRLVPG---RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEecC---CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999743 26899999999999999999 9999999 9999999986
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=7.4e-29 Score=220.72 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=133.9
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
..+.+.++|||+|||+++|+++|+++|+.||.+..+.+ . +..++.++|||||+|.+.++|..|+++++..+.++.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~---~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 83 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-V---DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 83 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-C---EEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-E---ECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEE
Confidence 45778999999999999999999999999998877333 1 2235778999999999999999999866655555555
Q ss_pred EEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccccc
Q psy14559 86 VVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEI 165 (405)
Q Consensus 86 ~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~ 165 (405)
.+.. ..... ......
T Consensus 84 ~v~~-~~~~~----------------------------------------------------------------~~~~~~ 98 (175)
T 1fje_B 84 KLEK-PKGRD----------------------------------------------------------------SKKVRA 98 (175)
T ss_dssp EEEC-CCCSS----------------------------------------------------------------CSTTGG
T ss_pred EEec-CCCcc----------------------------------------------------------------cccccc
Confidence 4432 22100 000112
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 6799999999999999999999999988777 5578899999999999999999999 99999999999999986
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=8.8e-27 Score=217.63 Aligned_cols=199 Identities=21% Similarity=0.308 Sum_probs=137.7
Q ss_pred CcccccCCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCC
Q psy14559 1 MAVDTVAPVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNT 78 (405)
Q Consensus 1 ~~~~~~~~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~ 78 (405)
|+....+.+++++|||+|||+ ++|+++|+++|+.||.|.+|++. .+ .+|||||+|.+.++|+.|+. +++.
T Consensus 24 ~~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~-~~-------~~g~afV~F~~~~~A~~Ai~~l~g~ 95 (229)
T 2adc_A 24 IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FN-------KKENALVQMADGNQAQLAMSHLNGH 95 (229)
T ss_dssp CCCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEEC-CT-------TSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEE-EC-------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 344555677889999999999 99999999999999999999993 22 27899999999999999997 5555
Q ss_pred ccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCC
Q psy14559 79 VFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYD 158 (405)
Q Consensus 79 ~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~ 158 (405)
.+.++.+.+........... .. +..... .......... .....+. ...
T Consensus 96 ~~~g~~l~v~~a~~~~~~~~--------~~-----~~~~~~--~~~~~~~~~~---~~~~~~~--------------~~~ 143 (229)
T 2adc_A 96 KLHGKPIRITLSKHQNVQLP--------RE-----GQEDQG--LTKDYGNSPL---HRFKKPG--------------SKN 143 (229)
T ss_dssp BCSSSBCEEECCSCCCCCCC--------CS-----SSSTTT--TEEECTTCSS---CCCCSTT--------------SGG
T ss_pred eECCeEEEEEEecCccccCc--------cc-----cccccc--cccccccCcc---cccCCcc--------------ccc
Confidence 55555554433222110000 00 000000 0000000000 0000000 000
Q ss_pred CccccccCcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeE
Q psy14559 159 TKKIEEIRRTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTL 235 (405)
Q Consensus 159 ~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i 235 (405)
........++|||+|||+++++++|+++|++|| .|.++++.. ..+|||||+|.+.++|.+|+. |||..+. |++|
T Consensus 144 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l 220 (229)
T 2adc_A 144 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ---KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 220 (229)
T ss_dssp GTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS---SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred cccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE---CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence 001112268999999999999999999999999 999999953 247899999999999999999 9999999 9999
Q ss_pred EEeeccC
Q psy14559 236 QMFHSTQ 242 (405)
Q Consensus 236 ~V~~a~~ 242 (405)
+|.+++.
T Consensus 221 ~v~~a~~ 227 (229)
T 2adc_A 221 RVSFSKS 227 (229)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9999874
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=4.5e-27 Score=216.72 Aligned_cols=190 Identities=15% Similarity=0.229 Sum_probs=131.0
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559 9 VKTKVVQVANIA-PQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV 86 (405)
Q Consensus 9 ~~~~tLfVgNLp-~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~ 86 (405)
++.++|||+||| +.+|+++|+++|+.||.|.+|++ +.+ .+|||||+|.+.++|+.|++ +++..+.++.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i-~~~-------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKF-MKS-------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEE-CTT-------STTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEE-ecC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 467899999999 79999999999999999999999 321 37999999999999999997 555555565555
Q ss_pred EeecCCCCC-chHHHHHHHHhccCCCCCCCCCCCCccc--ccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccc
Q psy14559 87 VTPYNSGEI-PDEQRALEIAAQQQGPNSGEPKLPAHVT--NQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIE 163 (405)
Q Consensus 87 vv~~~~~~~-~~e~ka~~l~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~ 163 (405)
|........ +... ...+.... ....+.+ ......+.... .....
T Consensus 74 v~~s~~~~~~p~~~----------------~~~~~~~~~~~~~~~~~---~~r~~~~~~~~--------------~~~~~ 120 (205)
T 3tyt_A 74 VCVSKQPAIMPGQS----------------YGLEDGSCSYKDFSESR---NNRFSTPEQAA--------------KNRIQ 120 (205)
T ss_dssp EEECSCSCCCCCSC----------------CBCTTSCBSEEECTTCT---TCSCSSHHHHT--------------TSCCC
T ss_pred EEEccCCccCCCcc----------------cccccCCccccccCCCc---cccccCccccc--------------ccccC
Confidence 443222110 0000 00000000 0000000 00000000000 00011
Q ss_pred ccCcEEEEeCCCCCCCHHHHHHHHhcCCCe--eEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe----eEE
Q psy14559 164 EIRRTLVAINIEESVSPQELVDFFQKVGTV--NYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK----TLQ 236 (405)
Q Consensus 164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I--~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~----~i~ 236 (405)
...++|||+|||+++|+++|+++|++||.| .++++..+.+.++|||||+|.+.++|.+|+. |||..|.|+ ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 226799999999999999999999999999 8999877666677999999999999999998 999999987 455
Q ss_pred Eee
Q psy14559 237 MFH 239 (405)
Q Consensus 237 V~~ 239 (405)
|++
T Consensus 201 vk~ 203 (205)
T 3tyt_A 201 LKL 203 (205)
T ss_dssp CEE
T ss_pred EEe
Confidence 554
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2.1e-26 Score=220.95 Aligned_cols=167 Identities=13% Similarity=0.176 Sum_probs=137.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
...++|||+|||+++|+++|+++|+.||.|.++++.. +..++.++|||||+|.+.++|..|+..+++..+++..+.+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 169 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY---SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe---eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4568999999999999999999999999999999843 2346889999999999999999999554444444444444
Q ss_pred ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559 89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT 168 (405)
Q Consensus 89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt 168 (405)
.+.... . . .......++
T Consensus 170 ~~a~~~-------------~-----------------------------~---------------------~~~~~~~~~ 186 (284)
T 3smz_A 170 HWTDAG-------------Q-----------------------------L---------------------TPALLHSRC 186 (284)
T ss_dssp EECCGG-------------G-----------------------------C---------------------CTTTTSCSE
T ss_pred EECCCC-------------C-----------------------------C---------------------CcccCCccE
Confidence 433210 0 0 000011679
Q ss_pred EEEeCCCCCC-CHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 169 LVAINIEESV-SPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 169 vfV~NLp~~~-tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
|||+|||+++ ++++|+++|+.||.|.++.++.+ +|.++|||||+|.+.++|.+|+. |||..+.|++|+|.++.
T Consensus 187 l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 187 LCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp EEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 9999999995 99999999999999999999765 77889999999999999999999 99999999999999986
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.4e-26 Score=220.56 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=129.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||.|.+|++ . +++|||||+|.+.++|..|+...|+..+++..+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~--------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-N--------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-E--------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-e--------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 455689999999999999999999999999999999 2 2489999999999999999975444444433333
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
+.+.. ..+
T Consensus 90 v~~a~------------------------------------------------------------------------~~~ 97 (261)
T 3sde_A 90 IRFAT------------------------------------------------------------------------HGA 97 (261)
T ss_dssp EEECC------------------------------------------------------------------------CSS
T ss_pred eeecc------------------------------------------------------------------------cCC
Confidence 32211 046
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-h-CCceeC---CeeEEEeecc
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-L-NGTNLK---GKTLQMFHST 241 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~---g~~i~V~~a~ 241 (405)
+|||+|||+.+|+++|+++|++||.|.+|.++.+ +|.++|||||+|.+.++|.+|+. | +|..+. |++|.|.++.
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 8999999999999999999999999999999765 77889999999999999999998 8 555555 9999999885
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 178 ~~ 179 (261)
T 3sde_A 178 QF 179 (261)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=3.6e-26 Score=207.69 Aligned_cols=188 Identities=22% Similarity=0.308 Sum_probs=131.8
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeEE
Q psy14559 10 KTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALVV 87 (405)
Q Consensus 10 ~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~v 87 (405)
..++|||+|||+ ++|+++|+++|+.||.|.+|++ ..+ .+|||||+|.+.++|+.|+. +++..+.++.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i-~~~-------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFN-------KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEEC-STT-------CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-EeC-------CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 368999999999 9999999999999999999999 322 27899999999999999997 5555555555544
Q ss_pred eecCCCC--CchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccccc
Q psy14559 88 TPYNSGE--IPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEI 165 (405)
Q Consensus 88 v~~~~~~--~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~ 165 (405)
....... .+.. . ...........+.+. .....+.. .........
T Consensus 74 ~~a~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~---~r~~~~~~--------------~~~~~~~~~ 119 (198)
T 1qm9_A 74 TLSKHQNVQLPRE---------G--------QEDQGLTKDYGNSPL---HRFKKPGS--------------KNFQNIFPP 119 (198)
T ss_dssp EECCCCSCCCSSS---------S--------SSSSSCEEESSCCCT---TSSSSCCC--------------CCCSCCCCC
T ss_pred EEecCCCcCCCCc---------C--------CccccccccccCCch---hhccCccc--------------cccccCCCC
Confidence 4322211 0000 0 000000000000000 00000000 000011122
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++|| .|.++++..+ .+|||||+|.+.++|.+|+. |||..+. |++|+|.+++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 68999999999999999999999999 9999999542 47999999999999999999 9999999 99999999874
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=4.1e-26 Score=219.73 Aligned_cols=171 Identities=16% Similarity=0.226 Sum_probs=133.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLG-KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G-~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...++|||+|||+.+|+++|+++|+.|| .|.+|++ +.+. .+.++|||||+|.+.++|..|+..+++..+++..+.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRL-PSLR---FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEEC-C----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEE-EeCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3578999999999999999999999999 9999999 4332 267899999999999999999985444444444444
Q ss_pred eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559 88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR 167 (405)
Q Consensus 88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r 167 (405)
+.+......... . .......+
T Consensus 191 v~~a~~~~~~~~--------------------------------------------~---------------~~~~~~~~ 211 (292)
T 2ghp_A 191 TKVSNPLEKSKR--------------------------------------------T---------------DSATLEGR 211 (292)
T ss_dssp EEECCCC--------------------------------------------------------------------CCTTT
T ss_pred EEECCCCccccc--------------------------------------------c---------------cccCCCCc
Confidence 444332100000 0 00011267
Q ss_pred EEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEecc-C--CCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 168 TLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTR-E--NDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 168 tvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~-~--~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
+|||+|||++ +++++|+++|++||.|.+|+++.+ . +.++|||||+|.+.++|.+|+.|||..|+|++|.|.+++.
T Consensus 212 ~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 212 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADK 290 (292)
T ss_dssp EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred eEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecC
Confidence 9999999999 999999999999999999999766 3 7899999999999999999999999999999999999873
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2e-19 Score=157.93 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=73.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|..|+. |||..+.|++|+|.+++.
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 679999999999999999999999999999999765 78899999999999999999998 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 150 ~ 150 (158)
T 2kn4_A 150 G 150 (158)
T ss_dssp S
T ss_pred C
Confidence 4
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=142.18 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=72.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+++|||+|||+++|+++|+++|++||+|.+|+++.+ +|.++|||||+|.+.++|.+|+. |||..+.|++|+|++|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 678999999999999999999999999999999765 67899999999999999999998 99999999999999986
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=1.4e-18 Score=145.12 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
|..+.+|||+|||+++|+++|+++|+.||+|.+|+|. .+. +.++|||||+|.+.++|+.|+..++...+++..+.
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~-~d~----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDE----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EET----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEe-ecC----CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4457789999999999999999999999999999994 333 45799999999999999999975554444444444
Q ss_pred eec
Q psy14559 88 TPY 90 (405)
Q Consensus 88 v~~ 90 (405)
+.+
T Consensus 77 V~~ 79 (115)
T 4f25_A 77 VGR 79 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=4.7e-18 Score=148.15 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=101.3
Q ss_pred CccccEEEEEecchhhHHHHHhcc-CCccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCC
Q psy14559 53 PVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPP 131 (405)
Q Consensus 53 ~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 131 (405)
...+|+++|+|.+.++|+.|+..+ |...+++ .+.+.+........ . .
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~---------~------~---------------- 57 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVT---------E------G---------------- 57 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEE---------C------S----------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccc---------c------c----------------
Confidence 356899999999999999999765 6666766 44444333210000 0 0
Q ss_pred CcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEE
Q psy14559 132 NQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALV 211 (405)
Q Consensus 132 ~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV 211 (405)
.... . ...........++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||
T Consensus 58 -----~~~~---~-----------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV 115 (150)
T 2i2y_A 58 -----SHHH---H-----------HHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFV 115 (150)
T ss_dssp -----SSSC---C-----------CCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEE
T ss_pred -----cccc---c-----------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEE
Confidence 0000 0 0000011122689999999999999999999999999999999654 6899999
Q ss_pred EECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 212 EFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 212 ~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
+|.+.++|..|+. |||..+.|++|+|.+++.
T Consensus 116 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 116 EFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp EESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 9999999999998 999999999999999863
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=8.2e-18 Score=140.39 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=72.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
..+|||+|||+++|+++|+++|++||.|.+|+|+.+.+.++|||||+|.+.++|++|+. |||..|.|++|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999999988877789999999999999999998 999999999999999864
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=138.52 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=72.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ +++++|||||+|.+.++|.+|+. |||..+.|+.|+|.++.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 689999999999999999999999999999999866 57899999999999999999998 99999999999999975
No 27
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=137.71 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=74.6
Q ss_pred cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
....++|||+|||+++++++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..++|++|+|.+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 33478999999999999999999999999999999987766789999999999999999999 99999999999999987
Q ss_pred C
Q psy14559 242 Q 242 (405)
Q Consensus 242 ~ 242 (405)
.
T Consensus 106 ~ 106 (109)
T 2err_A 106 A 106 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=6.3e-18 Score=136.73 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCC--eeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCc----eeCCeeEE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGT--VNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGT----NLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~--I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~----~l~g~~i~ 236 (405)
-.||||+|||+++|+++|+++|++||. |.+|+++.| ++.+||||||+|.+.++|.+|++ |||. .+.||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 469999999999999999999999995 678998766 68899999999999999999998 9996 59999999
Q ss_pred EeeccC
Q psy14559 237 MFHSTQ 242 (405)
Q Consensus 237 V~~a~~ 242 (405)
|++|++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999874
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=7.2e-18 Score=134.96 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=69.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeecc
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-L-NGTNLKGKTLQMFHST 241 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~g~~i~V~~a~ 241 (405)
++|||+|||+++|+++|+++|++|| +|.+|+++.+ ++.++|||||+|.+.++|.+|++ + ++..++|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 8999999765 67899999999999999999998 6 4578999999999986
Q ss_pred C
Q psy14559 242 Q 242 (405)
Q Consensus 242 ~ 242 (405)
.
T Consensus 82 ~ 82 (91)
T 2lxi_A 82 P 82 (91)
T ss_dssp S
T ss_pred C
Confidence 3
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.4e-17 Score=131.06 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=74.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~ 244 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 68999999999999999999999999999999988766689999999999999999998 99999999999999997553
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7e-17 Score=131.53 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=74.3
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
..++|||+|||+++++++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 378999999999999999999999999999999988766689999999999999999999 9999999999999999754
No 32
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=7.7e-17 Score=148.44 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=106.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.+||||+|||+++|+++|+++|++||+|.+|+|+.+ ++.++|||||+|.+.++|.+|+. +||..+.|+.|++..+..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 679999999999999999999999999999999875 67899999999999999999998 999999999999998753
Q ss_pred CCCCCC---------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHh
Q psy14559 243 SIQKPE---------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLAL 313 (405)
Q Consensus 243 ~~~~p~---------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al 313 (405)
...... .........++.+.+..+ .+....++.+|+. . .+|++++.|.....+++||
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----------G~i~~~~i~~d~~--~--~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF----------GNILSCKVVCDEN--G--SKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGG----------SCEEEEEEEEETT--E--EEEEEEEEESSHHHHHHHH
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhc----------CCeEEEEeeccCC--C--CceEEEEEeCCHHHHHHHH
Confidence 310000 001112233333333222 1112222333422 2 4677777888888889999
Q ss_pred hhCCCcceeeee
Q psy14559 314 EIGDDLEVVVRD 325 (405)
Q Consensus 314 ~~~~~~~~~~~~ 325 (405)
+..++..+.++.
T Consensus 161 ~~lng~~~~g~~ 172 (213)
T 4f02_A 161 EKMNGMLLNDRK 172 (213)
T ss_dssp HHHTTCEETTEE
T ss_pred HHhCCCEECCEE
Confidence 988888877663
No 33
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=3.4e-17 Score=129.18 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=71.1
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a 240 (405)
..++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+.++|..+.|+.|.|+.|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3789999999999999999999999999999999765 578899999999999999999999999999999999875
No 34
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=3e-17 Score=128.67 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|++++
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 789999999999999999999999999999998654 66789999999999999999997 99999999999999874
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=130.41 Aligned_cols=78 Identities=17% Similarity=0.346 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+.|||..+.|++|+|.+++..
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 689999999999999999999999999999999765 678899999999999999999999999999999999999754
No 36
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=135.44 Aligned_cols=76 Identities=12% Similarity=0.206 Sum_probs=71.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|++||+|.+|+++.+ .+.++|||||+|.+.++|.+|+.++|..+.|+.|.|..+.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 689999999999999999999999999999999866 5789999999999999999999999999999999999765
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=6.7e-18 Score=134.49 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=68.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.+|||+|||+++|+++|+++|++|| .|.+++++.+ +|.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999765 78899999999999999999997 99999999999999987
Q ss_pred C
Q psy14559 242 Q 242 (405)
Q Consensus 242 ~ 242 (405)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=6.5e-17 Score=126.16 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.+|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999999999999999999999999999765 67889999999999999999999 999999999999999873
No 39
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.3e-17 Score=140.45 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=104.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~ 244 (405)
|+|||+|||+++|+++|+++|++||.|.++.++.+ .+.++|||||+|.+.++|..|+. |||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999766 56789999999999999999996 99999999999999986442
Q ss_pred CCCCCC---------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhh
Q psy14559 245 QKPEAK---------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEI 315 (405)
Q Consensus 245 ~~p~~~---------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~ 315 (405)
...... +......++.+.+..+. +.....+..++..+. .+|++++.+.....+++|++.
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G----------~i~~~~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFP----------SYLSGHVMWDMQTGS--SRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTST----------TEEEEEEEECTTTCC--EEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccC----------CeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHH
Confidence 211111 11222334333332211 111222334444444 455666667777888999998
Q ss_pred CCCcceeee
Q psy14559 316 GDDLEVVVR 324 (405)
Q Consensus 316 ~~~~~~~~~ 324 (405)
.++..+.++
T Consensus 149 l~g~~~~g~ 157 (166)
T 3md3_A 149 MQGQDLNGR 157 (166)
T ss_dssp HTTCEETTE
T ss_pred hCCCccCCc
Confidence 777776555
No 40
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=5.2e-17 Score=129.33 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=74.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.++.+..+++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 68999999999999999999999999999999988888899999999999999999999 9999999999999998744
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=127.62 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=72.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 679999999999999999999999999999999765 67889999999999999999999 99999999999999986
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=129.33 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=73.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 689999999999999999999999999999999765 67899999999999999999997 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 88 ~ 88 (99)
T 1whw_A 88 K 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=131.41 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=74.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.+..+++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 78999999999999999999999999999999987778899999999999999999999 9999999999999999754
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=128.79 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=72.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 689999999999999999999999999999999765 56789999999999999999999 999999999999999863
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=9.1e-17 Score=129.25 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+++++.+ ++.++|||||+|.+.++|.+|+. |||..++|+.|+|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999765 57889999999999999999998 999999999999999873
No 46
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=129.67 Aligned_cols=77 Identities=25% Similarity=0.457 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++++
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 689999999999999999999999999999999765 57789999999999999999999 999999999999999863
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=130.88 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=73.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 789999999999999999999999999999999765 67899999999999999999998 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 92 ~ 92 (102)
T 2cqb_A 92 M 92 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=9.4e-17 Score=126.91 Aligned_cols=77 Identities=22% Similarity=0.439 Sum_probs=73.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+.|||..+.|++|+|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 689999999999999999999999999999999765 67899999999999999999999999999999999999874
No 49
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.7e-17 Score=134.16 Aligned_cols=79 Identities=29% Similarity=0.466 Sum_probs=73.4
Q ss_pred cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a 240 (405)
+...++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+.|||..|.|+.|+|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 334789999999999999999999999999999999765 478999999999999999999999999999999999998
Q ss_pred c
Q psy14559 241 T 241 (405)
Q Consensus 241 ~ 241 (405)
+
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 6
No 50
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=130.48 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=73.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc---CCCCCcEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR---ENDTNKYALVEFSDQACVIPALK-L-NGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~g~~i~V~~a 240 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. | ||..|.|++|+|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 689999999999999999999999999999999765 77899999999999999999998 8 999999999999999
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
+..
T Consensus 95 ~~~ 97 (107)
T 2cph_A 95 DSE 97 (107)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=127.11 Aligned_cols=78 Identities=24% Similarity=0.455 Sum_probs=73.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 689999999999999999999999999999999765 57899999999999999999999 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 85 ~ 85 (95)
T 2dnz_A 85 R 85 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 52
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=127.81 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=71.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|++ |||..+.|++|+|++++
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 679999999999999999999999999999999765 57789999999999999999997 99999999999999874
No 53
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=130.14 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=73.9
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
..++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 3789999999999999999999999999999999765 67889999999999999999999 99999999999999987
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 94 ~~ 95 (103)
T 2cq0_A 94 PS 95 (103)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=1.9e-16 Score=131.49 Aligned_cols=78 Identities=14% Similarity=0.294 Sum_probs=73.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 789999999999999999999999999999999765 67889999999999999999998 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 95 ~ 95 (115)
T 2dgo_A 95 K 95 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=128.38 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=73.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYI-RFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i-~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++ +++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 6899999999999999999999999999999 98765 67889999999999999999999 99999999999999997
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 85 ~~ 86 (96)
T 1x5t_A 85 KK 86 (96)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 56
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=128.22 Aligned_cols=71 Identities=20% Similarity=0.358 Sum_probs=67.3
Q ss_pred cEEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe-eEEE
Q psy14559 167 RTLVAINIEESV------SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK-TLQM 237 (405)
Q Consensus 167 rtvfV~NLp~~~------tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~-~i~V 237 (405)
++|||+|||+.+ ++++|+++|++||.|.++.++.+++.++|||||+|.+.++|.+|+. |||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 7799999999999999999987788999999999999999999999 999999999 8876
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=129.81 Aligned_cols=76 Identities=21% Similarity=0.447 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~ 234 (405)
.++|||+|||+++++++|+++|++||.|.+ ++++.+ ++.++|||||+|.+.++|.+|++ |||..+.|++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 689999999999999999999999999999 988765 67889999999999999999998 9999999999
Q ss_pred EEEeecc
Q psy14559 235 LQMFHST 241 (405)
Q Consensus 235 i~V~~a~ 241 (405)
|+|++++
T Consensus 93 l~V~~A~ 99 (99)
T 2la6_A 93 IKVSFAT 99 (99)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 9999874
No 58
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.4e-16 Score=139.05 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=104.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 579999999999999999999999999999999765 67889999999999999999998 999999999999999864
Q ss_pred CCCCCCC-------CChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhh
Q psy14559 243 SIQKPEA-------KSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEI 315 (405)
Q Consensus 243 ~~~~p~~-------~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~ 315 (405)
....+.. .+......++.+.+.... ......+..++..++ ..|++++.+.....+++|++.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G----------~i~~~~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYG----------RIITSRILVDQVTGV--SRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGS----------CEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHH
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcC----------CEeEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHH
Confidence 3211110 011222333333332221 111122233433333 456666677777788999997
Q ss_pred CCCcceeee
Q psy14559 316 GDDLEVVVR 324 (405)
Q Consensus 316 ~~~~~~~~~ 324 (405)
.++..+.++
T Consensus 150 l~g~~~~g~ 158 (167)
T 1fxl_A 150 LNGQKPSGA 158 (167)
T ss_dssp HTTCCCTTC
T ss_pred hcCCccCCC
Confidence 776665543
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=2e-16 Score=131.46 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=73.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 679999999999999999999999999999999765 67889999999999999999997 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 105 ~ 105 (115)
T 2cpz_A 105 K 105 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=128.30 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 679999999999999999999999999999999765 67889999999999999999997 999999999999999874
No 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.1e-16 Score=133.54 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=71.6
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
..++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..++|++|+|++++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 3689999999999999999999999999999999755 67899999999999999999998 99999999999999864
No 62
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=130.88 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=68.7
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCce--eCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTN--LKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~--l~g~~i~V~~a~ 241 (405)
..++|||+|||+++|+++|+++|++||.|.++.++. .||||||+|.+.++|.+|+. |||.. +.|++|.|++|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 378999999999999999999999999999999863 58999999999999999998 98875 789999999997
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 63
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=127.87 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++|||+|||+++++++|+ ++|++||.|.+|+++.+... +|||||+|.+.++|.+|+. |||..+.|++|+|.++
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 5799999999999999999 99999999999999876444 8999999999999999999 9999999999999999
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
+..
T Consensus 88 ~~~ 90 (96)
T 2dgx_A 88 TGA 90 (96)
T ss_dssp CCS
T ss_pred CCC
Confidence 744
No 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=1.4e-16 Score=131.58 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=71.7
Q ss_pred ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
...++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+..+|..++|+.|+|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 33789999999999999999999999999999999765 5889999999999999999999955799999999999987
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 103 ~~ 104 (109)
T 2rs2_A 103 PR 104 (109)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=130.60 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=73.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 689999999999999999999999999999999765 57889999999999999999999 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 93 ~ 93 (103)
T 2dnm_A 93 G 93 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=129.06 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=73.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 689999999999999999999999999999999765 67899999999999999999999 999999999999999874
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 95 ~ 95 (105)
T 1x5u_A 95 H 95 (105)
T ss_dssp T
T ss_pred C
Confidence 4
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=3.6e-17 Score=125.34 Aligned_cols=73 Identities=11% Similarity=0.251 Sum_probs=68.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a 240 (405)
+|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|++|+.+||..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999999765 678999999999999999999999999999999999874
No 68
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=2.6e-17 Score=133.94 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=71.9
Q ss_pred CcEEEEeCCCC------CCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC-eeE
Q psy14559 166 RRTLVAINIEE------SVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG-KTL 235 (405)
Q Consensus 166 ~rtvfV~NLp~------~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g-~~i 235 (405)
.++|||+|||+ ++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..+.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 68999999999 9999999999999999999999765 58899999999999999999998 99999999 999
Q ss_pred EEeecc
Q psy14559 236 QMFHST 241 (405)
Q Consensus 236 ~V~~a~ 241 (405)
+|.++.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 999875
No 69
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.3e-16 Score=139.80 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=104.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|..|+. |+|..+.|++|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 689999999999999999999999999999999654 67789999999999999999998 999999999999999864
Q ss_pred CCCCCCCC-------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhh
Q psy14559 243 SIQKPEAK-------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEI 315 (405)
Q Consensus 243 ~~~~p~~~-------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~ 315 (405)
....+... +......++.+.+..+ .+.....+.+++..+++ +|++++.|.....+++|++.
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----------G~i~~~~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKY----------GSIVQKNILRDKLTGRP--RGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSS----------SCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHH
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcC----------CcEEEEEEEEcCCCCCc--ceEEEEEECCHHHHHHHHHH
Confidence 42211111 1122233333333221 11112223344434443 56676677778888999997
Q ss_pred CCCcceee
Q psy14559 316 GDDLEVVV 323 (405)
Q Consensus 316 ~~~~~~~~ 323 (405)
.++..+.+
T Consensus 151 l~g~~~~g 158 (168)
T 1b7f_A 151 LNNVIPEG 158 (168)
T ss_dssp HTTCCCTT
T ss_pred hcCCEecC
Confidence 66666543
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=132.12 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=72.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 689999999999999999999999999999999765 57789999999999999999998 999999999999999863
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=128.67 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=72.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccC---C--CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE---N--DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~---~--~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
.++|||+|||+++++++|+++|++||.|.+|.+..+. + .++|||||+|.+.++|.+|+. |||..+.|++|+|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 6799999999999999999999999999999997542 2 788999999999999999999 999999999999999
Q ss_pred ccCC
Q psy14559 240 STQS 243 (405)
Q Consensus 240 a~~~ 243 (405)
++..
T Consensus 85 a~~~ 88 (98)
T 2cpf_A 85 SERA 88 (98)
T ss_dssp SSCS
T ss_pred ccCC
Confidence 9754
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=131.37 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=69.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++|+++|+++|++||.|.+|+++.+ ||||||+|.+.++|..|+. |+ |..|.|++|+|.+++.
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 689999999999999999999999999999999753 8999999999999999998 76 4799999999999975
Q ss_pred CCC
Q psy14559 243 SIQ 245 (405)
Q Consensus 243 ~~~ 245 (405)
...
T Consensus 92 ~~~ 94 (105)
T 1sjq_A 92 KEL 94 (105)
T ss_dssp SSC
T ss_pred CCC
Confidence 533
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=2.5e-16 Score=128.56 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=73.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC---eeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKG---KTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g---~~i~V~~a 240 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.| ++|+|.++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 789999999999999999999999999999999765 67789999999999999999998 99999998 99999999
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
+..
T Consensus 95 ~~~ 97 (105)
T 2dnh_A 95 DTD 97 (105)
T ss_dssp CSS
T ss_pred ccC
Confidence 754
No 74
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=128.96 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=73.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 689999999999999999999999999999999765 67789999999999999999997 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 92 ~ 92 (102)
T 1x5s_A 92 S 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=7.7e-17 Score=132.20 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe-eEEE
Q psy14559 166 RRTLVAINIEESV------SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK-TLQM 237 (405)
Q Consensus 166 ~rtvfV~NLp~~~------tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~-~i~V 237 (405)
.++|||+|||+.+ ++++|+++|++||.|.+|.++..+|.++|||||+|.+.++|.+|+. |||..|.|+ +|+|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 6899999999999 7899999999999999999986688999999999999999999999 999999999 9999
Q ss_pred eeccC
Q psy14559 238 FHSTQ 242 (405)
Q Consensus 238 ~~a~~ 242 (405)
.++..
T Consensus 95 ~~a~~ 99 (105)
T 2nlw_A 95 NLFTD 99 (105)
T ss_dssp ECSCC
T ss_pred EEcch
Confidence 99863
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=132.22 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=73.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|++|+. |||..+.|+.|+|.+++..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 689999999999999999999999999999999766 67899999999999999999998 9999999999999999743
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=129.42 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=73.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hC------CceeCCeeEE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LN------GTNLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-ln------g~~l~g~~i~ 236 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. || |..+.|++|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 689999999999999999999999999999999765 57789999999999999999998 99 9999999999
Q ss_pred EeeccCC
Q psy14559 237 MFHSTQS 243 (405)
Q Consensus 237 V~~a~~~ 243 (405)
|.++...
T Consensus 95 v~~a~~~ 101 (111)
T 1x4h_A 95 VDLAVTR 101 (111)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9998754
No 78
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=6.6e-16 Score=138.89 Aligned_cols=147 Identities=10% Similarity=0.107 Sum_probs=102.1
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
..++|||+|||+++|+++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+.++|..+.|+.|.|.++..
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 3789999999999999999999999999999999765 57789999999999999999999999999999999999864
Q ss_pred CCCCCCC-------------CChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhh
Q psy14559 243 SIQKPEA-------------KSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVAL 309 (405)
Q Consensus 243 ~~~~p~~-------------~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~ 309 (405)
....... .+......++.+.+..+ .+.....+..++..++ .+|++++.|.....+
T Consensus 92 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----------G~i~~v~i~~~~~~g~--~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----------GKIEVIEIMTDRGSGK--KRGFAFVTFDDHDSV 159 (196)
T ss_dssp -----------CCSEEEEECCTTTCCHHHHHHHHTTT----------SCEEEEEEEECTTTCC--EEEEEEEEESSHHHH
T ss_pred cccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcC----------CCeEEEEEeecCCCCC--ccceEEEEECCHHHH
Confidence 3211100 01112223333332211 1111222334444444 455666667777778
Q ss_pred HHHhhhCCCcceeee
Q psy14559 310 DLALEIGDDLEVVVR 324 (405)
Q Consensus 310 ~~al~~~~~~~~~~~ 324 (405)
++||+. ++..+.++
T Consensus 160 ~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNGH 173 (196)
T ss_dssp HHHHHC-SCCEETTE
T ss_pred HHHHHh-CCcEECCE
Confidence 899986 45555554
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=2.1e-16 Score=129.49 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=72.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+.+++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|++++
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 689999999999999999999999999999999765 77789999999999999999999 99999999999999875
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=4.5e-16 Score=126.77 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=72.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++|| |.+|+++.+ ++.++|||||+|.+.++|.+|+.|||..|.|++|+|.+++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence 68999999999999999999999997 999999766 578899999999999999999999999999999999998754
No 81
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-16 Score=128.63 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=72.3
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
..++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|++|+. +++ .|.|++|+|.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 3789999999999999999999999999999999765 67899999999999999999999 888 8999999999986
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 95 ~~ 96 (116)
T 2cqd_A 95 LG 96 (116)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 82
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=129.15 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 689999999999999999999999999999999765 57789999999999999999998 999999999999999863
No 83
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=127.63 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCee-EEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee----EEE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVN-YIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT----LQM 237 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~-~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~----i~V 237 (405)
.++|||+|||+++++++|+++|++||.|. +++++.+ ++.++|||||+|.+.++|++|+. |||..+.|+. |+|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v 88 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKL 88 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEE
Confidence 68999999999999999999999999999 9999765 67889999999999999999999 9999999999 999
Q ss_pred eeccC
Q psy14559 238 FHSTQ 242 (405)
Q Consensus 238 ~~a~~ 242 (405)
.+++.
T Consensus 89 ~~a~~ 93 (99)
T 2div_A 89 NYATY 93 (99)
T ss_dssp EETTC
T ss_pred eecCC
Confidence 99874
No 84
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=131.83 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTV-NYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I-~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|++||.| .+|+|+.+ ++.++|||||+|.+.++|.+|+.+||..|.|+.|.|.++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 6899999999999999999999999999 88999765 6789999999999999999999999999999999999986
No 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=124.40 Aligned_cols=76 Identities=18% Similarity=0.355 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccC--CC-CCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE--ND-TNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~--~~-~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+. +. ++|||||+|.+.++|.+|+. |||..+.|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5799999999999999999999999999999996653 33 89999999999999999999 99999999999999986
No 86
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.6e-16 Score=125.70 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
...|||+||++.+|+++|+++|++||+|.++.+.. ++|||||+|.+.++|.+|++ |||..+.|++|+|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45799999999999999999999999999999843 79999999999999999999 99999999999999874
No 87
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=3.3e-16 Score=128.09 Aligned_cols=78 Identities=12% Similarity=0.227 Sum_probs=72.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCcee---CCeeEEEee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNL---KGKTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l---~g~~i~V~~ 239 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..+ .|++|+|.+
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 689999999999999999999999999999999765 67899999999999999999998 999988 899999999
Q ss_pred ccCC
Q psy14559 240 STQS 243 (405)
Q Consensus 240 a~~~ 243 (405)
+...
T Consensus 93 a~~~ 96 (106)
T 2dgp_A 93 ADSE 96 (106)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9754
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-17 Score=131.47 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR---ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++|| |.+|+++.+ ++.++|||||+|.+.++|.+|+.|||..++|+.|+|.+++.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence 78999999999999999999999999 999999754 57899999999999999999999999999999999999863
No 89
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=139.06 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=71.8
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
..++|||+|||+++|+++|+++|++|| .|.+|+++.+ +|.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 368999999999999999999999999 9999999866 78899999999999999999999 999999999999999
Q ss_pred cc
Q psy14559 240 ST 241 (405)
Q Consensus 240 a~ 241 (405)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 90
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=128.91 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=72.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++..
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 679999999999999999999999999999999765 67789999999999999999999 9999999999999998643
No 91
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.5e-16 Score=128.86 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|..|+. |||..+.|++|+|.++..
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 689999999999999999999999999999999765 67889999999999999999998 999999999999999863
No 92
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.3e-16 Score=126.19 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|++ |||..|.|+.|+|.+++..
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC-SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 68999999999999999999999999999999854 35579999999999999999997 9999999999999999754
No 93
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=128.58 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+..||..|.|+.|.|.+++..
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCC
Confidence 789999999999999999999999999999999765 678899999999999999999988999999999999998755
Q ss_pred C
Q psy14559 244 I 244 (405)
Q Consensus 244 ~ 244 (405)
.
T Consensus 96 ~ 96 (105)
T 2dh8_A 96 G 96 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.9e-16 Score=126.32 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=72.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--C-CCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--E-NDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~-~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++|| |.+|.++.+ + +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccC
Confidence 68999999999999999999999999 999999766 3 7889999999999999999999999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 94 ~ 94 (104)
T 1wi8_A 94 A 94 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=2e-16 Score=133.11 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=73.8
Q ss_pred ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
...++|||+|||+++|+++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+.|||..|.|+.|+|.+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 34689999999999999999999999999999999765 6789999999999999999999999999999999999987
Q ss_pred C
Q psy14559 242 Q 242 (405)
Q Consensus 242 ~ 242 (405)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.1e-16 Score=125.37 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-h--CCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L--NGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-l--ng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ||||||+|.+.++|..|+. | ++..+.|++|.|++++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 689999999999999999999999999999988653 8999999999999999997 5 57889999999999985
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 91 ~ 91 (101)
T 2cq1_A 91 K 91 (101)
T ss_dssp S
T ss_pred c
Confidence 5
No 97
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=126.93 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=72.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNY-IRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++|+++|+++|++||.|.+ |.++.+ +++++|||||+|.+.++|.+|+..||..++|+.|.|..+...
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHH
Confidence 679999999999999999999999999987 888655 788999999999999999999999999999999999988644
No 98
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=128.48 Aligned_cols=78 Identities=21% Similarity=0.428 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVN--------YIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~--------~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~ 234 (405)
.++|||+|||+++++++|+++|++||.|. .|+++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 78999999999999999999999999999 5888654 67889999999999999999998 9999999999
Q ss_pred EEEeeccCC
Q psy14559 235 LQMFHSTQS 243 (405)
Q Consensus 235 i~V~~a~~~ 243 (405)
|+|.+++..
T Consensus 95 l~V~~a~~~ 103 (113)
T 2cpe_A 95 LKVSLARKK 103 (113)
T ss_dssp CEEECSSCC
T ss_pred EEEEECCCC
Confidence 999998754
No 99
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=133.42 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=74.2
Q ss_pred ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
...++|||+|||+++++++|+++|+.||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34789999999999999999999999999999999765 56789999999999999999999 9999999999999999
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
+..
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 100
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=6.2e-16 Score=130.32 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=74.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 689999999999999999999999999999999765 67789999999999999999999 9999999999999999765
Q ss_pred CC
Q psy14559 244 IQ 245 (405)
Q Consensus 244 ~~ 245 (405)
..
T Consensus 115 ~~ 116 (124)
T 2kt5_A 115 ID 116 (124)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 101
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.1e-16 Score=128.00 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=73.7
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
..++|||+|||+++++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+..+|..|.|+.|+|.++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 3689999999999999999999999999999999765 57899999999999999999999999999999999999875
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=130.43 Aligned_cols=78 Identities=15% Similarity=0.354 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCCCHHHHH---HHHhcCCCeeEEEEeccCC-----CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 166 RRTLVAINIEESVSPQELV---DFFQKVGTVNYIRFCTREN-----DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~---~~F~~~G~I~~i~i~~~~~-----~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
.++|||+|||+++++++|+ ++|++||.|.+|.++.+.+ .++|||||+|.+.++|++|+. |||..|.|++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 6799999999999999999 9999999999999976632 567999999999999999999 999999999999
Q ss_pred EeeccCC
Q psy14559 237 MFHSTQS 243 (405)
Q Consensus 237 V~~a~~~ 243 (405)
|.+++..
T Consensus 95 V~~a~~k 101 (111)
T 2cpi_A 95 ASLGTTK 101 (111)
T ss_dssp EESCCCC
T ss_pred EEecccc
Confidence 9998754
No 103
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.6e-16 Score=123.24 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++| .|.+|+++.+ ++.++|||||+|.+.++|.+|+.|||..++|+.|.|.+++.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 6899999999999999999999999 9999999766 67889999999999999999999999999999999999874
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=131.88 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGT---VNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~---I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|+.||. |.+|+++.+ .++++|||||+|.+.++|++|+.+||..|+|+.|+|.+++
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 689999999999999999999999999 899999755 6788999999999999999999999999999999999875
No 105
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=8e-16 Score=127.72 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+++.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 689999999999999999999999999999999764 4569999999999999999999 999999999999999863
No 106
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=3.7e-16 Score=133.24 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=72.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 689999999999999999999999999999999765 57899999999999999999999 999999999999999863
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-16 Score=130.04 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=70.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++|+++|+++|++||.|.+|+++.+ ||||||+|.+.++|.+|+. |+ +..|.|++|+|.+++.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 689999999999999999999999999999999764 7999999999999999998 77 4689999999999986
Q ss_pred CCCC
Q psy14559 243 SIQK 246 (405)
Q Consensus 243 ~~~~ 246 (405)
...+
T Consensus 107 k~~~ 110 (119)
T 2ad9_A 107 KELK 110 (119)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5433
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=129.81 Aligned_cols=76 Identities=26% Similarity=0.495 Sum_probs=72.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 689999999999999999999999999999999765 67789999999999999999998 99999999999999986
No 109
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=1.3e-15 Score=139.95 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=69.7
Q ss_pred CcEEEEeCCC-CCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIE-ESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp-~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+||| +.+++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|..|++ |||..+.|++|+|.+++..
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 6799999999 89999999999999999999999653 58999999999999999998 9999999999999998643
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=121.29 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 6899999999999999999999999999999995 7899999999999999998 9999999999999999754
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=127.31 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=73.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCce-eCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQK-VGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTN-LKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~-~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~-l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|++ ||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||.. +.|++|+|.++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 679999999999999999999999 999999999766 77889999999999999999999 99999 999999999986
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 89 ~~ 90 (104)
T 2dhg_A 89 PK 90 (104)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 112
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=128.76 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=70.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
..+|||+|||+++|+++|+++|++| .|.+|+|+.+ .|+++|||||+|.+.++|.+|+.+||..|+||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 5799999999999999999999999 8999999765 6789999999999999999999999999999999998764
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=2.3e-16 Score=135.45 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=73.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++|+++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 679999999999999999999999999999999765 67899999999999999999998 999999999999999874
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 127 ~ 127 (135)
T 2lea_A 127 G 127 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9e-16 Score=126.06 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.++. .||||||+|.+.++|.+|+. |++ ..+.|++|.|++++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 68999999999999999999999999999999864 38999999999999999998 765 459999999999976
Q ss_pred CC
Q psy14559 243 SI 244 (405)
Q Consensus 243 ~~ 244 (405)
..
T Consensus 91 ~~ 92 (104)
T 1wex_A 91 KR 92 (104)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 115
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.1e-16 Score=120.23 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L-NGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++.+.. ++|||||+|.+.++|..|+. | +|..+.|++|+|++++
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 68999999999999999999999999999999965 47999999999999999999 8 9999999999999874
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.9e-17 Score=125.91 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|+.|++.+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 689999999999999999999999999999999765 67889999999999999999999 99999999999887654
No 117
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=129.14 Aligned_cols=77 Identities=12% Similarity=0.250 Sum_probs=71.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++|+++|+++|++||. .+|+|+.+ +++++|||||+|.+.++|++|+.+|+..|+|+.|.|..+...
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence 689999999999999999999999995 49998765 778999999999999999999999999999999999988743
No 118
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=126.17 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|++|+. |||..|.|++|+|+++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 679999999999999999999999999987766543 67789999999999999999997 999999999999999863
No 119
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=9.4e-17 Score=122.90 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=68.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a 240 (405)
||||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+.++|..+.|++|.|+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999998765 578899999999999999999999999999999999864
No 120
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=2e-16 Score=126.63 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 579999999999999999999999999988877543 67789999999999999999998 99999999999999876
No 121
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=123.24 Aligned_cols=77 Identities=12% Similarity=0.294 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++...
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence 679999999999999999999999999999999765 57889999999999999999999 578999999999998754
No 122
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=8.6e-17 Score=127.62 Aligned_cols=76 Identities=18% Similarity=0.413 Sum_probs=69.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.+ |..|+. |||..++|++|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999765 5789999999999999 999998 9999999999999998743
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=4.3e-16 Score=129.50 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=69.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
..+|||+|||+++++++|+++|++|| .|..+.+.. ..++|||||+|.+.++|++|+. |||..|.|+.|+|..++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 67999999999999999999999999 999998853 3579999999999999999998 99999999999999986
No 124
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.9e-16 Score=127.26 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~ 244 (405)
.++|||+|||+++++++|+++|++||.|.+|.++ .++|||||+|.+.++|..|+. |||..+.|++|.|++++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 6799999999999999999999999999999885 368999999999999999998 99999999999999997654
Q ss_pred C
Q psy14559 245 Q 245 (405)
Q Consensus 245 ~ 245 (405)
.
T Consensus 86 ~ 86 (111)
T 1whx_A 86 F 86 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-16 Score=121.74 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=68.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. ++ ..++|++|+|+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999765 57899999999999999999999 77 9999999999875
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=7.3e-16 Score=127.21 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=68.6
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
..++|||+|||+++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+. |||..++|+.|+|.+++.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 37899999999999999999999999999999996 7999999999999999998 999999999999999874
No 127
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=131.78 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+. |||..|.|++|+|.++
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 6799999999999999876 6999999999998753 57789999999999999999998 9999999999999998
Q ss_pred cC
Q psy14559 241 TQ 242 (405)
Q Consensus 241 ~~ 242 (405)
+.
T Consensus 108 ~~ 109 (127)
T 2a3j_A 108 ET 109 (127)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 128
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=1.1e-15 Score=139.53 Aligned_cols=151 Identities=12% Similarity=0.117 Sum_probs=100.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++|+++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 679999999999999999999999999999999765 67899999999999999999999 999999999999988753
Q ss_pred CCCCCCCCChHHHHHHHHHHHH--------------HHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehh
Q psy14559 243 SIQKPEAKSNEAAQREIEEAMS--------------RVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVA 308 (405)
Q Consensus 243 ~~~~p~~~~~~~~~~e~~~~~k--------------~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~ 308 (405)
... ..... ........ ...+...+++...+.....+.+++..+++ ++++++.|.....
T Consensus 108 ~~~-----~~~~~-~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~--~g~afV~F~~~~~ 179 (216)
T 2qfj_A 108 IGQ-----AQPII-DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH--KGYGFIEYEKAQS 179 (216)
T ss_dssp CGG-----GHHHH-HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE--EEEEEEEESSHHH
T ss_pred ccc-----cchhh-hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc--CceEEEEecCHHH
Confidence 210 00000 00000000 00112222221111122233445444444 4566666777777
Q ss_pred hHHHhhhCCCcceeee
Q psy14559 309 LDLALEIGDDLEVVVR 324 (405)
Q Consensus 309 ~~~al~~~~~~~~~~~ 324 (405)
+++||+..++..+.++
T Consensus 180 A~~A~~~l~g~~~~g~ 195 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQ 195 (216)
T ss_dssp HHHHHHHHTTCBCSSS
T ss_pred HHHHHHHccCCEeCCc
Confidence 8999998777666554
No 129
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.5e-16 Score=138.10 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=100.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++|+++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|..|+. ++..+.|+.|.|..+...
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCCH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccch
Confidence 689999999999999999999999999999999765 67899999999999999999998 467999999999887522
Q ss_pred CCCCC-------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhC
Q psy14559 244 IQKPE-------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIG 316 (405)
Q Consensus 244 ~~~p~-------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~ 316 (405)
..... ..+......++.+.+..+ .+.....+..++..+++++++| +.+....++++|++ .
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----------G~i~~~~i~~~~~~g~~~g~af--V~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQW----------GTIIDAQLMLDKDTGQSRGFGF--VTYDSADAVDRVCQ-N 148 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHHTT----------SCCSEEECCCSSSSSTTSEEEE--EEESSHHHHHHHHH-C
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHHhC----------ccEEEEEEEEcCCCCccceEEE--EEECCHHHHHHHHh-C
Confidence 10000 001111223333333221 1222233445555666665554 45677777889998 4
Q ss_pred CCcceeee
Q psy14559 317 DDLEVVVR 324 (405)
Q Consensus 317 ~~~~~~~~ 324 (405)
+++.+.++
T Consensus 149 ~~~~~~g~ 156 (167)
T 2cjk_A 149 KFIDFKDR 156 (167)
T ss_dssp SEECSSSS
T ss_pred CCEEeCCe
Confidence 55555544
No 130
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=119.94 Aligned_cols=72 Identities=26% Similarity=0.369 Sum_probs=68.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.+. ++||||+|.+.++|.+|+. |||..+.|+.|+|++++..
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 7899999999999999999999999999999984 5599999999999999998 9999999999999999754
No 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=5.3e-16 Score=158.18 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=73.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||. |||..|.|+.|.|.+++.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 579999999999999999999999999999999765 67899999999999999999997 999999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 182 ~ 182 (437)
T 3pgw_S 182 R 182 (437)
T ss_pred C
Confidence 4
No 132
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=8e-16 Score=129.79 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=73.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++|+++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|+++..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 679999999999999999999999999999999765 67889999999999999999998 999999999999999874
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 102 ~ 102 (126)
T 3ex7_B 102 R 102 (126)
T ss_dssp S
T ss_pred C
Confidence 3
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.6e-15 Score=122.58 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=67.7
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+ ++++++|+++|++||.|.++++ ++|||||+|.+.++|.+|+. |||..+.|++|+|++++.
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 78999999998 9999999999999999999998 38999999999999999999 999999999999999863
No 134
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=129.51 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++|||+|||+++++++|+++|++||.|.+++++.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+|
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 789999999999999999999999999999999765 67899999999999999999997 9999999999999875
No 135
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=3.6e-16 Score=134.65 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGT---VNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~---I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|++||. |.+|+++.+ .++++|||||+|.+.++|++|+.+||..|+|+.|.|..+.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH 123 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence 689999999999999999999999999 899999765 6789999999999999999999999999999999999875
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=120.25 Aligned_cols=72 Identities=28% Similarity=0.416 Sum_probs=68.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++|+++|+++|++||.|.++.++ ++||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 6899999999999999999999999999999995 5599999999999999998 9999999999999999754
No 137
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=125.31 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEe-cc--CCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEe
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGT-VNYIRFC-TR--ENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMF 238 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~-~~--~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~ 238 (405)
.++|||+|||+++++++|+++|++||. |.++.++ .+ ++.++|||||+|.+.++|..|+. || +..+.|++|+|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 689999999999999999999999998 9999987 44 45789999999999999999999 85 599999999999
Q ss_pred eccCC
Q psy14559 239 HSTQS 243 (405)
Q Consensus 239 ~a~~~ 243 (405)
+++..
T Consensus 88 ~a~~~ 92 (109)
T 2dis_A 88 WAEPE 92 (109)
T ss_dssp ESCSS
T ss_pred EcCCC
Confidence 98743
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=124.02 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++++++|+++|++||.|.++++. .++|||||+|.+.++|.+|+. |||..++|+.|+|.+++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 6899999999999999999999999999999985 568999999999999999998 99999999999999886
No 139
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5e-15 Score=119.65 Aligned_cols=72 Identities=26% Similarity=0.418 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKV--GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~--G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++| |.|.++.+ .+|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 6899999999999999999999999 99999987 37899999999999999999 999999999999999874
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 89 ~ 89 (99)
T 2cpd_A 89 V 89 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.8e-16 Score=126.34 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=67.6
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+ ++|+++|+++|++||.|.+|.++. .+|||||+|.+.++|..|+. ||| ..|.|++|.|++++
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 78999999999 999999999999999999999964 36899999999999999998 876 46999999999997
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 91 ~~ 92 (102)
T 1x4d_A 91 KY 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 141
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=123.56 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC-----eeEEEee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG-----KTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g-----~~i~V~~ 239 (405)
.++|||+|||+++++++|+++|++||.|.+|.++.+ |||||+|.+.++|++|+. |||..|.| +.|+|.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 689999999999999999999999999999999765 899999999999999999 99999999 9999999
Q ss_pred ccC
Q psy14559 240 STQ 242 (405)
Q Consensus 240 a~~ 242 (405)
++.
T Consensus 90 a~~ 92 (108)
T 1x4c_A 90 DGP 92 (108)
T ss_dssp SSC
T ss_pred CCC
Confidence 874
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=122.19 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.| +++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 7899999999999999999999999987 45444 77889999999999999999999 9999999999999999754
No 143
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=124.01 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=65.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
....+|||+|||+++|+++|+++|+.||+|.+|++.. +..+++++|||||+|.+.++|+.|+..+|+..+++..+.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR---DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee---cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3457899999999999999999999999999999943 3356889999999999999999999755555555555555
Q ss_pred ecC
Q psy14559 89 PYN 91 (405)
Q Consensus 89 ~~~ 91 (405)
.++
T Consensus 94 ~~A 96 (99)
T 4fxv_A 94 SYA 96 (99)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 144
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=123.56 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 689999999999999999999999999999999754 8999999999999999997 9999999999999999754
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=6e-16 Score=124.33 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++|||+|||+++++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+. |||..+.|++|+|.++
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 6899999999999999999 9999999999998863 45678999999999999999998 9999999999999998
Q ss_pred cC
Q psy14559 241 TQ 242 (405)
Q Consensus 241 ~~ 242 (405)
+.
T Consensus 87 ~~ 88 (97)
T 1nu4_A 87 KT 88 (97)
T ss_dssp SS
T ss_pred cC
Confidence 73
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=128.92 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGT---VNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~---I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|+.||. |.+|+++.+ .|.++|||||+|.+.++|.+|+.+||..++|+.|+|.++.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence 789999999999999999999999998 899999755 5789999999999999999999999999999999998875
No 147
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.7e-15 Score=144.56 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=71.6
Q ss_pred CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++|||+|||+++++++|+ ++|++||.|.+|++.. ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 7899999999999999976 8999999999999875 67789999999999999999997 9999999999999998
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
+..
T Consensus 88 ~~~ 90 (282)
T 3pgw_A 88 KTD 90 (282)
T ss_pred ccC
Confidence 643
No 148
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=2.5e-15 Score=131.61 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=73.7
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
..++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3689999999999999999999999999999999766 57789999999999999999999 99999999999999997
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 118 ~~ 119 (156)
T 1h2v_Z 118 GF 119 (156)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 149
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-16 Score=133.41 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=71.9
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--EEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCc----eeCCeeE
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNY--IRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGT----NLKGKTL 235 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~----~l~g~~i 235 (405)
..++|||+|||+++|+++|+++|++||.|.. |+|+.+ ++.++|||||+|.+. +|.+|+. |||. .+.|++|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 3789999999999999999999999999976 998766 688999999999999 9999998 9999 9999999
Q ss_pred EEeeccCC
Q psy14559 236 QMFHSTQS 243 (405)
Q Consensus 236 ~V~~a~~~ 243 (405)
+|.+++..
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99998643
No 150
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=121.30 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=69.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 68999999999999999999999999999999964 48999999999999999997 9999999999999999754
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=3.4e-15 Score=131.38 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=101.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKV----G-------TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~----G-------~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~ 234 (405)
.++|||+|||+++|+++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|+.+||..+.|++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE----ETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe----cCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 6899999999999999999999999 7 7778877 45689999999999999999999999999999
Q ss_pred EEEeeccCCCCCCCCC-------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeeh
Q psy14559 235 LQMFHSTQSIQKPEAK-------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDV 307 (405)
Q Consensus 235 i~V~~a~~~~~~p~~~-------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~ 307 (405)
|+|.++......+... +......++.+.+..+.. + ....+.+++.++++ +|++++.+....
T Consensus 80 i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--------v--~~v~i~~~~~~g~~--~g~afV~f~~~~ 147 (172)
T 2g4b_A 80 LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP--------L--KAFNLVKDSATGLS--KGYAFCEYVDIN 147 (172)
T ss_dssp CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC--------E--EEEEEEECTTTCSE--EEEEEEEESSTT
T ss_pred eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--------c--eEEEEEecCCCCCc--ceEEEEEeCCHH
Confidence 9999886442211111 112233444444432211 1 11223344434443 456666677777
Q ss_pred hhHHHhhhCCCcceeee
Q psy14559 308 ALDLALEIGDDLEVVVR 324 (405)
Q Consensus 308 ~~~~al~~~~~~~~~~~ 324 (405)
.+++|++..++..+.++
T Consensus 148 ~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp HHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHcCCCEECCe
Confidence 78999998777776655
No 152
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=125.44 Aligned_cols=83 Identities=10% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
++.+.++|||+|||+++|+++|+++|++||+|.+|+| +. |..+++++|||||+|.+.++|+.|++.+|...+++..+
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i-~~--d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEI-LL--HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EE--CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EE--CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4567899999999999999999999999999999999 43 33568899999999999999999997655555555555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 79 ~V~~a~ 84 (110)
T 3s8s_A 79 HAQLDI 84 (110)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 555544
No 153
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=123.83 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=69.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
++|||+|||+++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999765 78999999999999999999 9999999999999998743
No 154
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=9.7e-16 Score=122.99 Aligned_cols=75 Identities=20% Similarity=0.435 Sum_probs=69.4
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
..++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++..
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 36899999999999999999999999988777 4477889999999999999999999 999999999999999864
No 155
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.8e-16 Score=129.27 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-ec-cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CT-RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~-~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|++||.|.++.+ .. .++.++|||||+|.+.++|.+|+.|||..|+|+.|.|.++.
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 689999999999999999999999999988444 33 37788999999999999999999999999999999999976
No 156
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=120.83 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC--CeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK--GKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~--g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|+. |||..+. |++|+|.+++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 578999999999999999999999999999998542 7899999999999999999 9999999 99999999874
No 157
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=124.57 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCcee--------CCeeE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNL--------KGKTL 235 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l--------~g~~i 235 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..+ .|++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 689999999999999999999999999999999766 67789999999999999999999 999999 57789
Q ss_pred EEeecc
Q psy14559 236 QMFHST 241 (405)
Q Consensus 236 ~V~~a~ 241 (405)
.|.++.
T Consensus 105 ~v~~a~ 110 (114)
T 1x5o_A 105 LCKFSG 110 (114)
T ss_dssp EEEECC
T ss_pred eEEccC
Confidence 998876
No 158
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=8.1e-16 Score=130.17 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=70.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTV----NYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I----~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a 240 (405)
..+|||+|||+++|+++|+++|++||.| .+|.|+.+ +++++|||||+|.+.++|.+|+..|+..|+||.|.|..+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 6799999999999999999999999975 68988765 788999999999999999999999999999999999886
Q ss_pred c
Q psy14559 241 T 241 (405)
Q Consensus 241 ~ 241 (405)
.
T Consensus 103 ~ 103 (123)
T 2dha_A 103 T 103 (123)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=120.58 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW--QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 67999999999999999999999999996 55553 4678999999999999999998 999999999999999873
No 160
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=124.45 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTV----NYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I----~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 6899999999999999999999999999 455444 78899999999999999999998 9999999999999999
Q ss_pred cCC
Q psy14559 241 TQS 243 (405)
Q Consensus 241 ~~~ 243 (405)
+..
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 755
No 161
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=1.4e-15 Score=123.55 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. +|..++|+.|.|.++..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 689999999999999999999999999999999765 67789999999999999999999 99999999999998863
No 162
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=4.9e-15 Score=120.70 Aligned_cols=72 Identities=19% Similarity=0.489 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++|+++|+++|++||.|.+|.++ ++||||+|.+.++|.+|+. |||..|.|++|+|.+++..
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 6799999999999999999999999999999984 6799999999999999999 9999999999999999744
No 163
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=4.4e-16 Score=126.31 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec--cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT--RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~--~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++|+++|+++|++||.|.. .++. .++.++|||||+|.+.++|.+|++|||..+.|+.|+|.+++..
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence 679999999999999999999999999887 3433 2678999999999999999999999999999999999998743
No 164
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.7e-15 Score=128.71 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=69.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCee--EEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVN--YIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~--~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~ 241 (405)
.++|||+|||+++|+++|+++|++| .|. +|+|+.+ .|+++|||||+|.+.++|++|+.+++..|+||.|.|..+.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 6789999999999999999999999 576 8988755 6789999999999999999999988899999999998875
No 165
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=122.17 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLG-KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT 88 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G-~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv 88 (405)
+.+|||+|||+++|+++|+++|+.|| +|.+|+| +. +..++.++|||||+|.+.++|+.|++. .+...+++..+.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i-~~--d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRL-MR--NKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCS-SS--CSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE-Ee--cCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 47999999999999999999999999 8999998 43 345788999999999999999999975 4666666666666
Q ss_pred ecCC
Q psy14559 89 PYNS 92 (405)
Q Consensus 89 ~~~~ 92 (405)
.++.
T Consensus 78 ~~a~ 81 (91)
T 2lxi_A 78 HYSD 81 (91)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 6654
No 166
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=120.40 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC-ceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG-TNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng-~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+. ||| ..+.|++|+|.+++.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 679999999999999999999999999 6666663 48999999999999999998 999 999999999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 83 ~ 83 (93)
T 2cqh_A 83 K 83 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 167
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=126.15 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeecc
Q psy14559 166 RRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~ 241 (405)
.++|||+|||++ +++++|+++|++||.|.+|.++ +++|||||+|.+.++|..|+. || +..|.|++|+|++++
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 789999999998 9999999999999999999995 358999999999999999998 75 467999999999997
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 101 ~~ 102 (112)
T 1x4f_A 101 KY 102 (112)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 168
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.2e-15 Score=120.27 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=68.1
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|..|+. |||..+.|++|+|.+++..
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 68999999999 99999999999999999999983 7999999999999999999 9999999999999999743
No 169
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=3.6e-15 Score=132.07 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=72.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+.+++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|..|+. |||..|.|++|.|.++..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 679999999999999999999999999999999765 67889999999999999999998 999999999999999863
No 170
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.4e-15 Score=117.61 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=66.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|.+...++. ||||+|.+.++|.+|+.|||..|.|+.|.|.++...
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 579999999999999999999999999999822222333 999999999999999999999999999999988644
No 171
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=2.3e-15 Score=140.73 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a 240 (405)
.++|||+|||+++|+++|+++|++|| .|.+|+|+.+ +++++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 67999999999999999999999999 9999999876 78899999999999999999999 9999999999999998
Q ss_pred c
Q psy14559 241 T 241 (405)
Q Consensus 241 ~ 241 (405)
+
T Consensus 148 ~ 148 (229)
T 3q2s_C 148 N 148 (229)
T ss_dssp C
T ss_pred C
Confidence 6
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=4.9e-15 Score=130.41 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=100.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CC--CCCcEEEEEECCHHHHHHHHH-hCCceeC---CeeEEE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--EN--DTNKYALVEFSDQACVIPALK-LNGTNLK---GKTLQM 237 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~--~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~~i~V 237 (405)
.++|||+|||+++|+++|+++|++||+|.+|+++.+ ++ .++|||||+|.+.++|..|+. |||..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 689999999999999999999999999999999765 33 689999999999999999998 9998776 678888
Q ss_pred eeccCCCCCCC--------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhh
Q psy14559 238 FHSTQSIQKPE--------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVAL 309 (405)
Q Consensus 238 ~~a~~~~~~p~--------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~ 309 (405)
.++......+. ..+......++.+.+..+.. + ....+.++. .+ ..+|++++.|.....+
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--------i--~~v~~~~~~-~g--~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ--------I--EECRILRGP-DG--LSRGCAFVTFTTRAMA 149 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC--------E--EEEEEEECT-TS--CEEEEEEEEESSHHHH
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC--------E--EEEEEEECC-CC--CEEEEEEEEECCHHHH
Confidence 87754322111 01112233444444332211 1 112223332 23 3456777777888888
Q ss_pred HHHhhhCCCccee
Q psy14559 310 DLALEIGDDLEVV 322 (405)
Q Consensus 310 ~~al~~~~~~~~~ 322 (405)
++||+..++..+.
T Consensus 150 ~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 150 QTAIKAMHQAQTM 162 (175)
T ss_dssp HHHHHHHTTSCCC
T ss_pred HHHHHHhcCCccc
Confidence 9999877665544
No 173
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=7.1e-15 Score=115.71 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=66.5
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
....+.++|||+|||+++|+++|+++|++||+|.+|++.. + ..+++++|||||+|.+.++|+.|+.+++..+.++.+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~--~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i 82 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM-D--PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVI 82 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEE-C--TTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEee-c--CCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEE
Confidence 3467889999999999999999999999999999999943 2 246889999999999999999999887766555544
Q ss_pred EE
Q psy14559 86 VV 87 (405)
Q Consensus 86 ~v 87 (405)
.+
T Consensus 83 ~v 84 (87)
T 3s7r_A 83 DP 84 (87)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 174
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=9.5e-15 Score=120.39 Aligned_cols=71 Identities=24% Similarity=0.356 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||++ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 579999999999 999999999999999999998 58999999999999999997 999999999999999874
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=4.4e-16 Score=137.81 Aligned_cols=139 Identities=18% Similarity=0.185 Sum_probs=102.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec-cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~-~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~ 244 (405)
.++|||+|||+++|+++|+++|++||.+..+.+.. .++.++|||||+|.+.++|.+|++|||..+.|++|+|.++....
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 92 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence 78999999999999999999999999776633322 36789999999999999999999999999999999999886321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceeee
Q psy14559 245 QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVR 324 (405)
Q Consensus 245 ~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~~ 324 (405)
.. .......+.+..+..+..-+...++ ..
T Consensus 93 ~~--------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~-------F~ 121 (175)
T 1fje_B 93 SK--------------------------------------------KVRAARTLLAKNLSFNITEDELKEV-------FE 121 (175)
T ss_dssp CS--------------------------------------------TTGGGGEEEEESCCSSCCHHHHHHH-------CT
T ss_pred cc--------------------------------------------ccccCCEEEEeCCCCCCCHHHHHHH-------HH
Confidence 00 0112234555555544442322222 22
Q ss_pred eeccccccccccccceEEEEEecCccccccc
Q psy14559 325 DVGHVREEDQDHVVDVLCLVIVRDPHVARDV 355 (405)
Q Consensus 325 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (405)
.+|.|+........-|.|.|.|.+++.|...
T Consensus 122 ~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 122 DALEIRLVSQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp TCSEEEEECSSSSCCSEEEEECSSHHHHHHH
T ss_pred hcCeEEEecCCCCCceEEEEEECCHHHHHHH
Confidence 3677776655566789999999999998764
No 176
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=5.6e-15 Score=132.97 Aligned_cols=153 Identities=17% Similarity=0.236 Sum_probs=103.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKV----G-------TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~----G-------~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~ 234 (405)
.++|||+|||+++|+++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|+.|||..+.|++
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~ 79 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE----ETTTTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe----cCCCCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence 6899999999999999999999999 5 6666666 56789999999999999999999999999999
Q ss_pred EEEeeccCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhh
Q psy14559 235 LQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALE 314 (405)
Q Consensus 235 i~V~~a~~~~~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~ 314 (405)
|+|.++......+...... . ...|. ............+++..+..+..-+.
T Consensus 80 i~v~~~~~~~~~~~~~~~~----------------~-----~~~~~-----~~~~~~~~~~~~l~v~nl~~~~~~~~--- 130 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENP----------------S-----VYVPG-----VVSTVVPDSAHKLFIGGLPNYLNDDQ--- 130 (198)
T ss_dssp EEEECCCCCCCCCCSSSCS----------------S-----CCCTT-----SSCCCSSCCCCEEEEECCCTTCCHHH---
T ss_pred EEEeCCCCCCCCCCCcCCC----------------c-----CCCCC-----CccCCCCCCCCEEEEeCCCCCCCHHH---
Confidence 9999886542221110000 0 00000 00011223445666666655544222
Q ss_pred hCCCcceeeeeecccccccc-----ccccceEEEEEecCccccccc
Q psy14559 315 IGDDLEVVVRDVGHVREEDQ-----DHVVDVLCLVIVRDPHVARDV 355 (405)
Q Consensus 315 ~~~~~~~~~~~~g~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 355 (405)
+.-...++|.|....- ....-|.|.|.|.+++.|...
T Consensus 131 ----l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A 172 (198)
T 2yh0_A 131 ----VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 172 (198)
T ss_dssp ----HHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHH
T ss_pred ----HHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHH
Confidence 2233345666655322 344578999999999999764
No 177
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=6.8e-15 Score=115.60 Aligned_cols=70 Identities=23% Similarity=0.441 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKV----G-------TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~----G-------~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~ 234 (405)
.++|||+|||+++++++|+++|++| | .|.++.+. .++|||||+|.+.++|.+|+.|||..+.|++
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC----SSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec----CCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 6899999999999999999999999 8 99999985 3489999999999999999999999999999
Q ss_pred EEEee
Q psy14559 235 LQMFH 239 (405)
Q Consensus 235 i~V~~ 239 (405)
|+|++
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99975
No 178
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=130.06 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE--------EEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYI--------RFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i--------~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
.++|||+|||+++|+++|+++|++||.|..+ ++ ..++.++|||||+|.+.++|.+|+. |||..|.|++|.
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 6799999999999999999999999998764 32 2368899999999999999999999 999999999999
Q ss_pred EeeccCC
Q psy14559 237 MFHSTQS 243 (405)
Q Consensus 237 V~~a~~~ 243 (405)
|.+++..
T Consensus 124 V~~a~~~ 130 (143)
T 3egn_A 124 VQFARSA 130 (143)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999744
No 179
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-14 Score=115.54 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=67.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|| ++|+++|+++|++||.|.+|.+ +.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i----~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe----cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 689999996 8999999999999999999998 3678999999999999999997 9999999999999998754
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=8.1e-16 Score=132.92 Aligned_cols=76 Identities=12% Similarity=0.249 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++|+++|+++|++|| |.+|+|+.+ .++++|||||+|.+.++|++|+.+|+..|.|+.|.|..+..
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 67999999999999999999999999 779998765 67899999999999999999999999999999999998864
No 181
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=4.2e-15 Score=117.65 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|.+|+. |||..+.|++|+|+++...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 6789999999999999999999999 99999984 678999999999999999999 9999999999999998654
No 182
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=120.58 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=67.5
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCc--eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc----
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGK--VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV---- 79 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~--I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~---- 79 (405)
.....-.||||+|||+++|+++|+++|++||. |.+|++ +. |..+++++|||||+|.+.++|+.|++.+|..
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i-~~--d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRL-IK--DKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEEC-CC--CSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEE-Ee--cCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 34556689999999999999999999999995 668888 43 4467899999999999999999999755442
Q ss_pred cccceeEEeecCC
Q psy14559 80 FIDRALVVTPYNS 92 (405)
Q Consensus 80 ~~~~~~~vv~~~~ 92 (405)
.++++.+.+.++.
T Consensus 81 ~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 81 KIDGKTIGVDFAK 93 (95)
T ss_dssp EETTEEEEEEECC
T ss_pred eECCEEEEEEEcc
Confidence 4666666666543
No 183
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.6e-15 Score=120.56 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++ +.+. . +.++|||||+|.+.++|+.|+.+++..+.++.+.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i-~~d~--~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTL--H-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEE-ECCC--T-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEE-EECC--C-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence 446799999999999999999999999999999999 5443 3 78999999999999999999996555666666555
Q ss_pred e
Q psy14559 88 T 88 (405)
Q Consensus 88 v 88 (405)
.
T Consensus 84 ~ 84 (103)
T 1s79_A 84 L 84 (103)
T ss_dssp E
T ss_pred E
Confidence 4
No 184
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=1e-14 Score=114.02 Aligned_cols=80 Identities=11% Similarity=0.154 Sum_probs=65.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
...+.++|||+|||+++|+++|+++|+.||+|.+|++. .+ ..++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP-LD--YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECC-EE--TTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEE-EC--CCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 35688999999999999999999999999999999983 32 2467889999999999999999996545444444444
Q ss_pred Eee
Q psy14559 87 VTP 89 (405)
Q Consensus 87 vv~ 89 (405)
.+.
T Consensus 80 ~v~ 82 (85)
T 3mdf_A 80 RVN 82 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 185
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=115.19 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=67.1
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
..+.+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..++.++|||||+|.+.++|+.|+..+|...+++..
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MK--DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEE-CC--CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34667899999999999999999999999999999999 33 2345788999999999999999999755555555555
Q ss_pred EEeec
Q psy14559 86 VVTPY 90 (405)
Q Consensus 86 ~vv~~ 90 (405)
+.+.+
T Consensus 88 l~v~~ 92 (94)
T 2e5h_A 88 IKASI 92 (94)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54443
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=4.5e-15 Score=138.07 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=70.1
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+ ++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|.+|+. |||..+.|+.|.|.+++..
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 68999999999 99999999999999999999997543 7999999999999999998 9999999999999998754
No 187
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=116.00 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=68.0
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
.+..+.++|||+|||+++|+++|+++|+.||+|.+|++. . +..++.++|||||+|.+.++|+.|+..+|...+++..
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYP-I--DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC-C--CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEE-e--cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 346788999999999999999999999999999999993 3 3346788999999999999999999655555555555
Q ss_pred EEeecCC
Q psy14559 86 VVTPYNS 92 (405)
Q Consensus 86 ~vv~~~~ 92 (405)
+.+.++.
T Consensus 80 l~V~~a~ 86 (99)
T 1whw_A 80 LHVLPST 86 (99)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 5555444
No 188
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=116.96 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=67.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|+.|+ .+.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 68999999999999999999999885 4555443 67789999999999999999998 999999999999999974
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 92 ~ 92 (102)
T 2fc8_A 92 K 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=2e-14 Score=114.40 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=62.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCce--eCCeeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTN--LKGKTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~--l~g~~i~V~~a~ 241 (405)
..+|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+ ++|.. +.|++|.|..+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcC
Confidence 679999999999999999999999999999999653 79999999999999884 45544 569999999886
No 190
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=5.2e-15 Score=122.75 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=63.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.+...++|||+|||+++|+++|+++|+.||.|.+|++ +.+ +.++|||||+|.+.++|..|+..+|+..+++..+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV-GNT-----PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-ECS-----TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-----CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3567899999999999999999999999999999999 332 4459999999999999999998555444444444
Q ss_pred Eeec
Q psy14559 87 VTPY 90 (405)
Q Consensus 87 vv~~ 90 (405)
.+.+
T Consensus 78 ~v~~ 81 (115)
T 3lqv_A 78 VVLY 81 (115)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 191
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=121.02 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=67.6
Q ss_pred CcEEEE--eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee-----CCeeEEE
Q psy14559 166 RRTLVA--INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL-----KGKTLQM 237 (405)
Q Consensus 166 ~rtvfV--~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l-----~g~~i~V 237 (405)
.++||| |||++++++++|+++|++||.|.+|.++. .||||||+|.+.++|++|+. |||..+ .|++|.|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 678999 77999999999999999999999998853 48999999999999999998 999998 7899999
Q ss_pred eeccCC
Q psy14559 238 FHSTQS 243 (405)
Q Consensus 238 ~~a~~~ 243 (405)
.+++..
T Consensus 101 ~~a~~~ 106 (114)
T 2cq2_A 101 NFVEKV 106 (114)
T ss_dssp EEESCC
T ss_pred EecccC
Confidence 998744
No 192
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=115.25 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+.+.++|||+|||+++|+++|+++|+.||+|.+|++. . +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM-K--DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE-C--CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe-e--cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4678999999999999999999999999999999994 3 334678899999999999999999985444444444444
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 79 V~~a~ 83 (95)
T 2dnz_A 79 VGHVT 83 (95)
T ss_dssp EEESS
T ss_pred EEEcc
Confidence 44443
No 193
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=1.1e-14 Score=130.77 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=73.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++...
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 679999999999999999999999999999999765 67889999999999999999999 9999999999999998754
No 194
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.2e-14 Score=114.74 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
...+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..+++++|||||+|.+.++|+.|+.+++..+.++.+.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM-IY--DAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEE-CC--CTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--CCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence 3667899999999999999999999999999999999 33 33467889999999999999999999555544455444
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
+.+..
T Consensus 83 -V~~a~ 87 (99)
T 2dgs_A 83 -VKRAE 87 (99)
T ss_dssp -EEECC
T ss_pred -EEECC
Confidence 44433
No 195
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=116.05 Aligned_cols=85 Identities=7% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++.....+..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999999999999999999999999999943321111347899999999999999999986555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 82 V~~a~ 86 (98)
T 2cpf_A 82 VRISE 86 (98)
T ss_dssp EECSS
T ss_pred EEEcc
Confidence 55544
No 196
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=2e-14 Score=111.84 Aligned_cols=79 Identities=8% Similarity=0.033 Sum_probs=64.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
+.+|||+|||+++|+++|+++|+.||+|.++++.. +..++.++|||||+|.+.++|+.|+..+|+..+++..+.+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 47899999999999999999999999999999943 224688999999999999999999985555445555555554
Q ss_pred CC
Q psy14559 91 NS 92 (405)
Q Consensus 91 ~~ 92 (405)
+.
T Consensus 78 a~ 79 (83)
T 3md1_A 78 AA 79 (83)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 197
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=114.48 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+.+.++|||+|||+++|+++|+++|+.||+|.+|++.. +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 66789999999999999999999999999999999943 224578899999999999999999986665555555555
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
+.++
T Consensus 89 v~~a 92 (95)
T 2cqc_A 89 VSGP 92 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 5543
No 198
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=113.77 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++.. +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 35678999999999999999999999999999999943 224678999999999999999999985555545555544
Q ss_pred eec
Q psy14559 88 TPY 90 (405)
Q Consensus 88 v~~ 90 (405)
+.+
T Consensus 80 v~~ 82 (87)
T 3bs9_A 80 TNW 82 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 199
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.5e-16 Score=129.66 Aligned_cols=77 Identities=21% Similarity=0.448 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~ 234 (405)
.++|||+|||+++++++|+++|++||.|.+ |+++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 679999999999999999999999999998 878654 57889999999999999999999 9999999999
Q ss_pred EEEeeccC
Q psy14559 235 LQMFHSTQ 242 (405)
Q Consensus 235 i~V~~a~~ 242 (405)
|+|.+++.
T Consensus 87 l~V~~a~~ 94 (116)
T 2lcw_A 87 IKVSFATR 94 (116)
Confidence 99999863
No 200
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=114.83 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++ +.+. .++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i-~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTI-CKDR---EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT---TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EECC---CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 567799999999999999999999999999999999 4333 377899999999999999999985444444444444
Q ss_pred eec
Q psy14559 88 TPY 90 (405)
Q Consensus 88 v~~ 90 (405)
+.+
T Consensus 89 V~~ 91 (95)
T 2ywk_A 89 VSG 91 (95)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
No 201
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=3.1e-14 Score=121.25 Aligned_cols=74 Identities=28% Similarity=0.355 Sum_probs=67.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcE-EEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY-ALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQ 242 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~-afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~ 242 (405)
-.|||+||++.+|+++|+++|++||.|.+|.+..+ ++|| |||+|.+.++|..|++ |||..|.| +.|+|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 36899999999999999999999999999988653 3688 9999999999999999 99999988 8999999975
Q ss_pred C
Q psy14559 243 S 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 4
No 202
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=113.64 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=62.2
Q ss_pred EEEEeCCCCCCCHHH----HHHHHhcC-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 168 TLVAINIEESVSPQE----LVDFFQKV-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 168 tvfV~NLp~~~tee~----L~~~F~~~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
+|||+|||+++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++ |||..+.||+|+|++++
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 499999999999988 55899999 599998 23 999999999999999998 99999999999999997
Q ss_pred CC
Q psy14559 242 QS 243 (405)
Q Consensus 242 ~~ 243 (405)
..
T Consensus 83 ~~ 84 (96)
T 2diu_A 83 KN 84 (96)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 203
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=119.35 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=63.8
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-c-CCccccc
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-T-NTVFIDR 83 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~-n~~~~~~ 83 (405)
.++.+.++|||+|||+++|+++|+++|++||+|.+|++. . .+|||||+|.+.++|+.|+.. + +...+++
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~--------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-K--------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-T--------TTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-c--------CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 357789999999999999999999999999999999993 2 279999999999999999974 3 3345555
Q ss_pred eeEEeecCC
Q psy14559 84 ALVVTPYNS 92 (405)
Q Consensus 84 ~~~vv~~~~ 92 (405)
..+.+.++.
T Consensus 82 r~l~V~~A~ 90 (105)
T 1sjq_A 82 QPIYIQFSN 90 (105)
T ss_dssp EECCBCCCS
T ss_pred EEEEEEEcC
Confidence 555555544
No 204
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.53 E-value=3.2e-14 Score=112.18 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
..++|||+|||+++|+++|+++|+.||.|.++++. . +..+++++|||||+|.+.++|+.|+.+++..+.++.+.+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTIL-C--DKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEE-E--SCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-e--cCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEE
Confidence 46899999999999999999999999999999994 3 2246788999999999999999999555555555554444
No 205
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=115.36 Aligned_cols=75 Identities=24% Similarity=0.221 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEE-EeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ 242 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~-i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~ 242 (405)
.++|||+|||+++++++|+++|++||.|.+++ ++.+.. .+.|||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 67899999999999999999999999999995 665432 3449999999999999998 999999999999999873
No 206
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=116.50 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++. .+ ..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~-~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA-KD--KTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEE-EC--SSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEe-ec--CCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 5678999999999999999999999999999999994 32 24678999999999999999999985555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 89 v~~a~ 93 (103)
T 2cq0_A 89 VEWAK 93 (103)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 55544
No 207
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.53 E-value=2.2e-14 Score=115.21 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
++++|||+|||+++|+++|+++|+.||.|.+|++ .. +..++.++|||||+|.+.++|+.|+..+|+..+++..+.+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKM-MF--DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CB--CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4689999999999999999999999999999999 33 33467889999999999999999997555555555555555
Q ss_pred cCCC
Q psy14559 90 YNSG 93 (405)
Q Consensus 90 ~~~~ 93 (405)
++..
T Consensus 78 ~a~~ 81 (96)
T 2x1f_A 78 YSSN 81 (96)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 5443
No 208
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.1e-14 Score=121.27 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=64.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee-----EEEee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT-----LQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~-----i~V~~ 239 (405)
.++|||+|||+++++++|+++|++||+|.+|.++.+ |||||+|.+.++|++|+. |||..|.|+. |+|..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 578999999999999999999999999999999654 899999999999999999 9999999998 55555
Q ss_pred cc
Q psy14559 240 ST 241 (405)
Q Consensus 240 a~ 241 (405)
+.
T Consensus 91 ~~ 92 (115)
T 3beg_B 91 DG 92 (115)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 209
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=115.93 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=64.8
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceE-EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVE-DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~-~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
.+..+.++|||+|||+++|+++|+++|+.||+|. +|++.. +..++.++|||||+|.+.++|+.|++.+|...+++.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 3467889999999999999999999999999999 999943 334678999999999999999999986555544444
Q ss_pred e
Q psy14559 85 L 85 (405)
Q Consensus 85 ~ 85 (405)
.
T Consensus 81 ~ 81 (99)
T 2div_A 81 T 81 (99)
T ss_dssp S
T ss_pred C
Confidence 3
No 210
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=3.1e-15 Score=135.28 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=69.8
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+ ++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|.+|+. |||..+.|++|.|.+++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 57999999999 99999999999999999999996543 7899999999999999998 9999999999999998744
No 211
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=2.6e-14 Score=126.27 Aligned_cols=75 Identities=27% Similarity=0.295 Sum_probs=68.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccCC
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQS 243 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~~ 243 (405)
.+|||+||++.+|+++|+++|++||.|.+|.+..+ .++|||||+|.+.++|..|++ |||..|.| ++|+|++++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 57999999999999999999999999999998643 357899999999999999999 99999965 99999999754
No 212
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=114.90 Aligned_cols=82 Identities=10% Similarity=0.182 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEE-EEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDL-RLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v-~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+.+.++|||+|||+++|+++|+++|+.||.|.++ ++ +. +..++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MR--DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CC--CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EE--cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4578999999999999999999999999999999 88 33 33468889999999999999999998655555555555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 79 ~v~~a~ 84 (96)
T 1x5t_A 79 TVSYAF 84 (96)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 555544
No 213
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=116.05 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
...+.++|||+|||+++|+++|+++|+.||+|.+|++.. + ..++.++|||||+|.+.++|+.|+.. +...+++..+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~--~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK-D--KTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE-C--SSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-C--CCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 366789999999999999999999999999999999943 2 24678999999999999999999988 6666666666
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 88 ~V~~a~ 93 (105)
T 2dh8_A 88 DPKPCT 93 (105)
T ss_dssp BCCCSC
T ss_pred EEEEcc
Confidence 655544
No 214
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=3.5e-14 Score=129.21 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=72.0
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
..++|||+|||+++|+++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+.+.+..++|++|.|..++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 3689999999999999999999999999999999765 677899999999999999999996567999999999987643
No 215
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=116.11 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=66.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYI-PR--EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CB--CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 556799999999999999999999999999999999 33 234678899999999999999999985444444444444
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 87 V~~a~ 91 (103)
T 2dnm_A 87 VQVAR 91 (103)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 44443
No 216
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=116.67 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC--ccccce
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT--VFIDRA 84 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~--~~~~~~ 84 (405)
...++++|||+|||+.+|+++|+++|++||+|.+|++. +++|||||+|.+.++|..|+..++. ..+++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 36688999999999999999999999999999999983 1479999999999999999975443 235555
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.+..
T Consensus 88 ~i~V~~S~ 95 (100)
T 3r27_A 88 PAFVNYST 95 (100)
T ss_dssp EEEEEECS
T ss_pred EEEEEecc
Confidence 55665544
No 217
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.52 E-value=9.4e-15 Score=118.65 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559 9 VKTKVVQVANIAP------QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID 82 (405)
Q Consensus 9 ~~~~tLfVgNLp~------~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~ 82 (405)
+..++|||+|||+ ++|+++|+++|++||+|.+|+| +.++ .+++++|||||+|.+.++|+.|++.+|+..++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i-~~d~--~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEF-PIDE--ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEEC-CEET--TTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEE-EEcC--CCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4578999999999 9999999999999999999999 4433 46889999999999999999999755554444
Q ss_pred c-eeEEeec
Q psy14559 83 R-ALVVTPY 90 (405)
Q Consensus 83 ~-~~~vv~~ 90 (405)
+ ..+.+.+
T Consensus 81 g~r~l~V~~ 89 (100)
T 3ns6_A 81 LKHRLFLYT 89 (100)
T ss_dssp SSCBCEEEE
T ss_pred CCeEEEEEE
Confidence 4 4444443
No 218
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=114.93 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=65.1
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-c
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--------LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-T 76 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--------v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~ 76 (405)
..+...++|||+|||+++|+++|+++|+.||.|.+ +++ +.+ ..+++++|||||+|.+.++|+.|++. +
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~--~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTD--RETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEE-EEC--TTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEE-Eec--CCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34778899999999999999999999999999999 888 333 24688999999999999999999975 4
Q ss_pred CCccccceeEE
Q psy14559 77 NTVFIDRALVV 87 (405)
Q Consensus 77 n~~~~~~~~~v 87 (405)
+..+.++.+.|
T Consensus 85 g~~~~g~~l~V 95 (99)
T 2la6_A 85 GKEFSGNPIKV 95 (99)
T ss_dssp TCBSSSSBCEE
T ss_pred CCEeCCcEEEE
Confidence 44444444433
No 219
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=115.74 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++. . +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMP-K--DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC-B--CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-e--cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 6678999999999999999999999999999999993 3 334678999999999999999999986555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 89 v~~a~ 93 (105)
T 1x5u_A 89 VNKAS 93 (105)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 54443
No 220
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=3.5e-14 Score=117.14 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=63.1
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
.+..+.++|||+|||+++|+++|+++|+.||+|.+|++ .. +..++.++|||||+|.+.++|+.|+..++..+.++.+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i-~~--~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MR--DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CC--CTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEE-EE--CCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence 34567899999999999999999999999999999999 33 3346889999999999999999999888754445544
Q ss_pred EEe
Q psy14559 86 VVT 88 (405)
Q Consensus 86 ~vv 88 (405)
.+.
T Consensus 97 ~V~ 99 (109)
T 2rs2_A 97 DPK 99 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 221
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.4e-14 Score=114.16 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++.. +. +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT-NR---AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE-CT---TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE-CC---CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 45679999999999999999999999999999999943 32 578899999999999999999976555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 90 v~~a~ 94 (100)
T 2do4_A 90 VAISN 94 (100)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 55443
No 222
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2.3e-14 Score=113.33 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=63.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...+..|||+||++.+||++|+++|++||+|.++++. .++|||||+|.+.++|.+|++.+|+..++++.+.
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~---------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY---------LNQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc---------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3457889999999999999999999999999999992 2599999999999999999987666666666666
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
+.++
T Consensus 75 V~~A 78 (89)
T 2wbr_A 75 AESP 78 (89)
T ss_dssp EECC
T ss_pred EEEC
Confidence 6554
No 223
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=116.18 Aligned_cols=82 Identities=9% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC------Cccc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN------TVFI 81 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n------~~~~ 81 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..++.++|||||+|.+.++|..|+..+| ...+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VL--HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CB--CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 556899999999999999999999999999999999 33 33467889999999999999999998766 6666
Q ss_pred cceeEEeecCC
Q psy14559 82 DRALVVTPYNS 92 (405)
Q Consensus 82 ~~~~~vv~~~~ 92 (405)
++..+.+.+..
T Consensus 89 ~g~~l~v~~a~ 99 (111)
T 1x4h_A 89 DGRQLKVDLAV 99 (111)
T ss_dssp SSCEEEEECCC
T ss_pred cCEEEEEEECC
Confidence 66666666554
No 224
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=116.72 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=66.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+..+.++|||+|||+.+|+++|+++|+.||+|.+|++.. + ..++.++|||||+|.+.++|+.|+..+|+..+++..+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~--~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM-D--SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE-E--TTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-c--CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 366789999999999999999999999999999999943 2 2467889999999999999999997555444544444
Q ss_pred EeecC
Q psy14559 87 VTPYN 91 (405)
Q Consensus 87 vv~~~ 91 (405)
.+.+.
T Consensus 99 ~V~~a 103 (108)
T 2jrs_A 99 KVGHV 103 (108)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 44443
No 225
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=4.2e-14 Score=115.21 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccc--e
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDR--A 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~--~ 84 (405)
..+.++|||+|||+++|+++|+++|+.||.|.+|++.. +. ++.++|||||+|.+.++|+.|+.. ++..+.++ .
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~-~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR-GP---DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE-CS---SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CC---CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 45689999999999999999999999999999999943 32 478899999999999999999975 44455551 3
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 88 ~l~V~~a~ 95 (105)
T 2dnh_A 88 SLVVKFAD 95 (105)
T ss_dssp CCEEEESC
T ss_pred cEEEEECc
Confidence 44444443
No 226
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=113.21 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=63.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|||+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|+.. +..+.|++|.|.++...
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 689999999999999999999999999999999653 789999999999999764332 34568999999998744
No 227
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.5e-14 Score=115.64 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|+|. . +..+++++|||||+|.+.++|+.|+..++.. +++..+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~-~~g~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI-T--DRQTGKSRGYGFVTMADRAAAERACKDPNPI-IDGRKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEES-C--CSSSCCCCSEEEEEESSHHHHHHHHTCSSCE-ETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEE-E--cCCCCccceEEEEEECCHHHHHHHHHhCCCc-CCCEEEE
Confidence 5678999999999999999999999999999999993 3 3346789999999999999999999888874 5444444
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
+.++
T Consensus 90 V~~a 93 (116)
T 2cqd_A 90 VNLA 93 (116)
T ss_dssp EEES
T ss_pred EEEc
Confidence 5444
No 228
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=5.7e-14 Score=116.43 Aligned_cols=82 Identities=16% Similarity=0.300 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+.+|+++|+++|+.||.|.+|++.. +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 56789999999999999999999999999999999943 224678899999999999999999976555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 89 V~~a~ 93 (115)
T 2dgo_A 89 TNWAT 93 (115)
T ss_dssp EEESS
T ss_pred EEEcc
Confidence 55544
No 229
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=113.86 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=66.1
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
....+.++|||+|||+++|+++|+++|+.||+|.+|++. .+. ..++|||||+|.+.++|+.|+..+|...+++..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~-~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII-FNE----RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEE-CCT----TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ecC----CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346678999999999999999999999999999999994 332 237999999999999999999755554455555
Q ss_pred EEeecCC
Q psy14559 86 VVTPYNS 92 (405)
Q Consensus 86 ~vv~~~~ 92 (405)
+.+.++.
T Consensus 85 l~v~~a~ 91 (103)
T 2cq3_A 85 IEVNNAT 91 (103)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 5555444
No 230
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.51 E-value=1e-14 Score=115.85 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=59.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeEEe
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALVVT 88 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~vv 88 (405)
.+|||+|||+++|+++|+++|+.|| .|.++++. . +..+++++|||||+|.+.++|+.|++.+| ..+.++.+.|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~-~--~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF-E--NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEE-E--CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEE-e--cCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 5899999999999999999999999 99999994 3 33468899999999999999999996544 45555555444
Q ss_pred e
Q psy14559 89 P 89 (405)
Q Consensus 89 ~ 89 (405)
.
T Consensus 79 ~ 79 (90)
T 3p5t_L 79 P 79 (90)
T ss_dssp C
T ss_pred E
Confidence 3
No 231
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=112.89 Aligned_cols=75 Identities=9% Similarity=0.114 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
+.+.++|||+|||+++|+++|+++|+.||+|.+|++. .+ ..++.++|||||+|.+.++|+.|+..+|...+++..
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAI-LD--KTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEE-CC--SSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ec--CCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4578999999999999999999999999999999993 32 246788999999999999999999855554444433
No 232
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=114.48 Aligned_cols=78 Identities=12% Similarity=0.194 Sum_probs=64.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED-LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~-v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
....++|||+|||+++|+++|+++|+.||.|.+ |+| +.+ .+++++|||||+|.+.++|+.|+..++..+.++.+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i-~~~---~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL-PVD---FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEEC-CBC---SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEE-EEC---CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 456799999999999999999999999999998 777 433 368899999999999999999998855555555555
Q ss_pred Eee
Q psy14559 87 VTP 89 (405)
Q Consensus 87 vv~ 89 (405)
+..
T Consensus 88 v~~ 90 (104)
T 1wg5_A 88 IFK 90 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 233
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=115.91 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PL--DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CC--CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEE-Ee--cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 567899999999999999999999999999999999 33 334678899999999999999999976666656566666
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 86 V~~a~ 90 (102)
T 2cqb_A 86 VNLAK 90 (102)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 65554
No 234
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.6e-14 Score=114.15 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+.+|+++|+++|+.||+|.+|++ ..+. ..++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEH----TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCC----CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEE-EecC----CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 556799999999999999999999999999999999 4332 33689999999999999999985555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 87 V~~a~ 91 (103)
T 2cqi_A 87 VNWAT 91 (103)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 65554
No 235
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.51 E-value=5.2e-14 Score=117.21 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++. . +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~-~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVF-I--DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEEC-C--CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-e--CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4567999999999999999999999999999999993 3 234678899999999999999999986555555554444
Q ss_pred ee
Q psy14559 88 TP 89 (405)
Q Consensus 88 v~ 89 (405)
+.
T Consensus 114 V~ 115 (118)
T 2khc_A 114 VQ 115 (118)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 236
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=3.7e-14 Score=134.48 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=95.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI 244 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~ 244 (405)
.++|||+|||+++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|..|+. |||..+.|+.|.|.++....
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA 97 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC
Confidence 6899999999999999999999999999999994 458999999999999999998 99999999999999986431
Q ss_pred -CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCC
Q psy14559 245 -QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGD 317 (405)
Q Consensus 245 -~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~ 317 (405)
.--...+......++.+.+..+. +.....+..+ ++++ ..|++++.|.....+.+||+..+
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G----------~i~~v~i~~~-~~g~--~~g~afV~f~~~~~A~~A~~~l~ 158 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFG----------PVEKAVVVVD-DRGR--ATGKGFVEFAAKPPARKALERCG 158 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGS----------CEEEEEEEEE-TTSC--EEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCCCCCHHHHHHHHHhcC----------CeEEEEeeeC-CCCC--cCcEEEEEeCCHHHHHHHHHHhc
Confidence 00001111122334444432221 1112223344 3344 45666666777777889998753
No 237
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=110.66 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=61.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
++|||+|||+++|+++|+++|++||+|.++++ +. +..+++++|||||+|.+.++|+.|+..++..+.++.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MR--DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-EC--CCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ec--CCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEE
Confidence 57999999999999999999999999999999 43 234678899999999999999999988884444544443
No 238
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=7.4e-14 Score=118.16 Aligned_cols=72 Identities=28% Similarity=0.321 Sum_probs=65.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcE-EEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccCC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY-ALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQS 243 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~-afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~~ 243 (405)
.|||+||++.+|+++|+++|++||.|.+|.+..+ .|| |||+|.+.++|..|+. |||..|.| ++|+|++++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 5789999999999999999999999999998643 386 9999999999999998 99999987 69999999754
No 239
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=4.2e-14 Score=117.35 Aligned_cols=82 Identities=9% Similarity=0.108 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||.|.+|++.. +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45669999999999999999999999999999999944 224678999999999999999999966555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 99 V~~a~ 103 (115)
T 2cpz_A 99 VQLKR 103 (115)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 55544
No 240
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=117.80 Aligned_cols=82 Identities=9% Similarity=0.138 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+....++|||+|||+++|+++|+++|+.||.|.+|.+ ..+. +++++|||||+|.+.++|+.|+..+|...+++..+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~---~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLL-IKDR---TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEE-ECST---TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC---CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3557799999999999999999999999999999999 4332 57889999999999999999997555555555555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 79 ~V~~a~ 84 (116)
T 2fy1_A 79 KVEQAK 84 (116)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 555444
No 241
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.3e-14 Score=114.83 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
.+.++|||+|||+++|+++|+++|+.||+|.+|++. . +..++.++|||||+|.+.++|+.|+..+|+..+++..+.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN-L--DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEE-E--CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEE-e--cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 456889999999999999999999999999999994 3 2346889999999999999999999754544444444444
Q ss_pred ec
Q psy14559 89 PY 90 (405)
Q Consensus 89 ~~ 90 (405)
.+
T Consensus 98 ~~ 99 (106)
T 1p27_B 98 DW 99 (106)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 242
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=111.03 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=58.6
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 11 TKVVQVANIAPQA------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 11 ~~tLfVgNLp~~v------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
.++|||+|||+.+ |+++|+++|++||+|.+|++ +. .+++++|||||+|.+.++|+.|+..+|+..+++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i-~~----~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY-PE----EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC-CC----BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe-cC----CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 4799999999999 88999999999999999998 32 357889999999999999999998655554444
No 243
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.50 E-value=4.8e-14 Score=111.98 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=65.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+..+.++|||+|||+++|+++|+++|+.||+|.+|++.. + +++++|||||+|.+.++|+.|+..++...+++..+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-~----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-E----NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-S----SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-c----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 356789999999999999999999999999999999943 2 47789999999999999999997555444444444
Q ss_pred EeecC
Q psy14559 87 VTPYN 91 (405)
Q Consensus 87 vv~~~ 91 (405)
.+.+.
T Consensus 79 ~v~~a 83 (92)
T 2dgv_A 79 DVRID 83 (92)
T ss_dssp CCEEC
T ss_pred EEEEc
Confidence 44443
No 244
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=115.13 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.+...++|||+|||+++|+++|+++|+.||. .+|+| +.++ +++++|||||+|.+.++|+.|+.+++..+.++.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i-~~d~---~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHI-EIGP---DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEE-EESS---SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEE-EECC---CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 3567799999999999999999999999995 49988 4332 58899999999999999999998765555566555
Q ss_pred Eee
Q psy14559 87 VTP 89 (405)
Q Consensus 87 vv~ 89 (405)
+..
T Consensus 86 V~~ 88 (102)
T 1wez_A 86 LFL 88 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 245
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=114.70 Aligned_cols=81 Identities=9% Similarity=0.089 Sum_probs=66.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
...+.++|||+|||+++|+++|+++|+.||+|.+|++.. + ++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-E----GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE-C----SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-C----CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 356789999999999999999999999999999999943 2 47789999999999999999998555444444445
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 86 ~V~~a~ 91 (103)
T 2d9p_A 86 YVALAQ 91 (103)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 554443
No 246
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=116.70 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=66.1
Q ss_pred ccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 5 TVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 5 ~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
+......++|||+|||+++|+++|+++|+.||+|.+|++ ..+. +.++|||||+|.+.++|+.|+..+|+..+++.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE----RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEE-CCBT----TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEE-EECC----CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344667899999999999999999999999999999999 3332 34799999999999999999985555445555
Q ss_pred eEEeecC
Q psy14559 85 LVVTPYN 91 (405)
Q Consensus 85 ~~vv~~~ 91 (405)
.+.+.++
T Consensus 98 ~l~V~~a 104 (109)
T 2err_A 98 KIEVNNA 104 (109)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 5555443
No 247
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=2.9e-14 Score=108.98 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=60.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+|||+|||+++|+++|+++|+.||+|.+|++ +. +..+++++|||||+|.+.++|+.|+.+++..+.++.+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 72 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MF--DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 72 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-CB--CSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--cCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEE
Confidence 5899999999999999999999999999998 43 234678899999999999999999996665555555443
No 248
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.7e-14 Score=114.70 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~ 86 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++. .+. ..++.++|||||+|.+.++|+.|+..+ |...+++..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLP-KKM-TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-CCC-SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEe-cCC-CCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 5677999999999999999999999999999999993 320 235788999999999999999999765 5555555555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 90 ~v~~a~ 95 (107)
T 2cph_A 90 VLEWAD 95 (107)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 555544
No 249
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.50 E-value=6.1e-14 Score=114.64 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+.+|+++|+++|+.||.|.+|++.. +. +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DR---SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE-CT---TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CC---CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 55689999999999999999999999999999999943 32 578899999999999999999985454444444444
Q ss_pred ee
Q psy14559 88 TP 89 (405)
Q Consensus 88 v~ 89 (405)
+.
T Consensus 102 V~ 103 (107)
T 3ulh_A 102 IQ 103 (107)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 250
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=115.32 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~ 86 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++. . +..++.++|||||+|.+.++|+.|++.+| ..+.++.+.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVV-K--DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEEC-C--CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE-e--CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 5678999999999999999999999999999999993 3 22467789999999999999999996544 444454444
Q ss_pred Ee
Q psy14559 87 VT 88 (405)
Q Consensus 87 vv 88 (405)
|.
T Consensus 86 v~ 87 (102)
T 1x5s_A 86 VD 87 (102)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 251
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=4.3e-14 Score=115.34 Aligned_cols=83 Identities=10% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccc--cc
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFI--DR 83 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~--~~ 83 (405)
...+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..+++++|||||+|.+.++|+.|+.. ++..++ ++
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LK--DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC-CC--CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-Ee--cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 3667899999999999999999999999999999999 43 334678899999999999999999974 444442 33
Q ss_pred eeEEeecCC
Q psy14559 84 ALVVTPYNS 92 (405)
Q Consensus 84 ~~~vv~~~~ 92 (405)
..+.+.++.
T Consensus 86 ~~l~v~~a~ 94 (106)
T 2dgp_A 86 RPIQVKPAD 94 (106)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEECC
Confidence 444444443
No 252
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=5.4e-14 Score=119.73 Aligned_cols=82 Identities=13% Similarity=0.196 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+.+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~--d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VY--DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEE-EC--CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 567899999999999999999999999999999999 33 334678899999999999999999986555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 120 V~~a~ 124 (129)
T 2kxn_B 120 VDFSI 124 (129)
T ss_dssp ESCCS
T ss_pred EEEec
Confidence 55443
No 253
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.3e-14 Score=119.29 Aligned_cols=75 Identities=11% Similarity=0.221 Sum_probs=66.5
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECC----HHH----HHHHHH---hCCce
Q psy14559 167 RTLVAINI----EESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSD----QAC----VIPALK---LNGTN 229 (405)
Q Consensus 167 rtvfV~NL----p~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~----~e~----A~~Al~---lng~~ 229 (405)
.+|||+|| |+.+++++|+++|++||+|.++.++.| +|.++|||||+|.+ +++ |.+|+. +||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999877 78899999999996 433 778865 79999
Q ss_pred eCCeeEEEeecc
Q psy14559 230 LKGKTLQMFHST 241 (405)
Q Consensus 230 l~g~~i~V~~a~ 241 (405)
|.|++|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 254
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.49 E-value=4.7e-14 Score=110.89 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCc-cccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPV-QSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~-~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...++|||+|||+++|+++|+++|+.||.|.++++.. +. .++. ++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ER--MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE-ET--TEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe-CC--CCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 3578999999999999999999999999999999943 22 2233 899999999999999999985554444444444
Q ss_pred eec
Q psy14559 88 TPY 90 (405)
Q Consensus 88 v~~ 90 (405)
+.+
T Consensus 79 v~~ 81 (88)
T 4a8x_A 79 ATA 81 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 255
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=117.74 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=59.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--C---CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--E---NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~---~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
.++|||+|||+++++++|+++|++||.|. +.++.+ + |.++|||||+|.+.++|++|+. |+ .+.|+.|.+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 68999999999999999999999999999 777654 3 6889999999999999999998 72 25555554443
No 256
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.49 E-value=2.6e-14 Score=114.24 Aligned_cols=79 Identities=13% Similarity=0.002 Sum_probs=62.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
.+..++|||+|||+++|+++|+++|+.||.|.++.+... ..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---NEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE---CTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe---CCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 556799999999999999999999999999998888443 24678899999999999999999975454444444444
Q ss_pred ee
Q psy14559 88 TP 89 (405)
Q Consensus 88 v~ 89 (405)
+.
T Consensus 89 v~ 90 (95)
T 2ek1_A 89 LS 90 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 257
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=8.1e-14 Score=114.03 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCCCcEEEEcCCCCCC------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559 8 PVKTKVVQVANIAPQA------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI 81 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~v------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~ 81 (405)
....++|||+|||+.+ |+++|+++|+.||.|.+|++ +. .+++++|||||+|.+.++|+.|+..+|+..+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i-~~----~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY-PE----EDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEEC-CC----BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEe-eC----CCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 4457899999999999 89999999999999999998 32 3578899999999999999999986665555
Q ss_pred cce-eEEeecCC
Q psy14559 82 DRA-LVVTPYNS 92 (405)
Q Consensus 82 ~~~-~~vv~~~~ 92 (405)
++. .+.+.++.
T Consensus 87 ~g~~~l~V~~a~ 98 (105)
T 2nlw_A 87 DKQHTFRVNLFT 98 (105)
T ss_dssp STTCEEEEECSC
T ss_pred CCCceEEEEEcc
Confidence 554 55555544
No 258
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.49 E-value=6.7e-14 Score=115.06 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..++.++|||||+|.+.++|..|+..+|+..+++..+.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NL--DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEC-CB--CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 445689999999999999999999999999999999 33 234678899999999999999999985555445555555
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
+.++
T Consensus 100 V~~a 103 (110)
T 1oo0_B 100 VDWC 103 (110)
T ss_dssp EEES
T ss_pred EEEc
Confidence 5443
No 259
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9.6e-14 Score=114.77 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++ ..+. +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDK---DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT---TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC---CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 456799999999999999999999999999999999 4333 378899999999999999999985555445555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 88 v~~a~ 92 (114)
T 2do0_A 88 VKMDE 92 (114)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 55443
No 260
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.5e-14 Score=117.27 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=65.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCce-EEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKV-EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I-~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+.+.++|||+|||+++|+++|+++|+.||.| .+|+| +.+ . +++++|||||+|.+.++|+.|+.+ |...+++..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i-~~d--~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV-LVD--N-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE-CCC--T-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEE-EEC--C-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 5677999999999999999999999999999 88998 433 2 688999999999999999999988 5555555555
Q ss_pred EeecC
Q psy14559 87 VTPYN 91 (405)
Q Consensus 87 vv~~~ 91 (405)
.+.++
T Consensus 87 ~v~~a 91 (114)
T 2cpy_A 87 FVHVV 91 (114)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55443
No 261
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.4e-13 Score=111.87 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=64.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.|| |.+|++.. + ..+++++|||||+|.+.++|+.|+.+++..+.+ ..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~-~--~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g-~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVR-D--KDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD-RSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEE-C--SSSCSEEEEEEEEESSHHHHHHHGGGTTCEETT-EECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEee-c--CCCCccceEEEEEECCHHHHHHHHhhCCCeECC-eEEE
Confidence 56679999999999999999999999997 99999943 2 346889999999999999999999555544444 4444
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 87 V~~a~ 91 (103)
T 2dng_A 87 VDIAE 91 (103)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 55444
No 262
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.8e-14 Score=113.76 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=66.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcc-CCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcc-cccee
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGY-LGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVF-IDRAL 85 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~-~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~-~~~~~ 85 (405)
+.+.++|||+|||+++|+++|+++|+. ||.|.+|++ +.+ . ++.++|||||+|.+.++|..|+..++... +++..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i-~~~--~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV-VLD--Q-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEE-EEC--T-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEE-EEC--C-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 567899999999999999999999999 999999999 433 2 57899999999999999999998655544 55555
Q ss_pred EEeecCC
Q psy14559 86 VVTPYNS 92 (405)
Q Consensus 86 ~vv~~~~ 92 (405)
+.+.++.
T Consensus 82 l~v~~a~ 88 (104)
T 2dhg_A 82 VRLSVAI 88 (104)
T ss_dssp CCCCBCC
T ss_pred EEEEEcc
Confidence 5554443
No 263
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.48 E-value=7e-14 Score=123.02 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..++|||+|||+++|+++|+++|+.|| +|.+|++.. |..+++++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~---d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE---NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 568999999999999999999999999 999999943 335788999999999999999999987666666666655
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 131 V~~a~ 135 (156)
T 3n9u_C 131 VRPAT 135 (156)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 55554
No 264
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=116.60 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
++|||+|||+++|+++|+++|+.||+|.+|++ +.+ ++|||||+|.+.++|+.|+..++...+++..+.+.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-ARN-------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE-ESS-------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 58999999999999999999999999999999 321 5899999999999999999754443444444444433
No 265
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=118.03 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++.. +. .+++++|||||+|.+.++|..|+..+|...+++..+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~-~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC-DR--ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE-ET--TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-cC--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 55679999999999999999999999999999999943 22 3578899999999999999999986555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 116 v~~a~ 120 (139)
T 1u6f_A 116 VALAA 120 (139)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 55444
No 266
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.7e-14 Score=115.24 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
...++|||+|||+++|+++|+++|+.||.|.+|++.. + ..++.++|||||+|.+.++|+.|+..+|+..+++..+.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~-~--~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY-D--RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE-E--TTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe-C--CCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4568999999999999999999999999999999943 2 236788999999999999999999755555455555555
Q ss_pred ecCCC
Q psy14559 89 PYNSG 93 (405)
Q Consensus 89 ~~~~~ 93 (405)
.++..
T Consensus 83 ~~a~~ 87 (104)
T 1p1t_A 83 DNAAS 87 (104)
T ss_dssp EETTC
T ss_pred EeCCC
Confidence 55543
No 267
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.48 E-value=2.6e-14 Score=109.15 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=61.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+|||+|||+++|+++|+++|+.||+|.+|++ +. +..++.++|||||+|.+.++|+.|+..++..+.++.+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PM--DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC-CC--SCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 6999999999999999999999999999998 43 234578899999999999999999988666655555443
No 268
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.1e-14 Score=113.26 Aligned_cols=81 Identities=11% Similarity=-0.007 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||.|.++.+... ..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---NEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE---CSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE---CCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 556799999999999999999999999999998777433 24678899999999999999999966555555555444
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
+.+.
T Consensus 89 V~~a 92 (98)
T 2cqp_A 89 LVLG 92 (98)
T ss_dssp EEES
T ss_pred EEEc
Confidence 4443
No 269
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=112.75 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||.|.+|++ .. ++.+++||||+|.+.++|+.|++.+|...+++..+.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KN-----RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-CC-----SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EE-----CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 456799999999999999999999999999999999 32 244799999999999999999965555555555556
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 93 V~~a~ 97 (109)
T 1x4a_A 93 VEFPR 97 (109)
T ss_dssp EECCC
T ss_pred EEEcc
Confidence 66554
No 270
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.6e-14 Score=114.97 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceE--------EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVE--------DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~--------~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
...+.++|||+|||+++|+++|+++|+.||.|. .|++ .. +..+++++|||||+|.+.++|+.|+..+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHI-YL--DKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEEC-CB--CTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEE-EE--eCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999999999999999999999999 5888 33 334688899999999999999999986555
Q ss_pred ccccceeEEeecCC
Q psy14559 79 VFIDRALVVTPYNS 92 (405)
Q Consensus 79 ~~~~~~~~vv~~~~ 92 (405)
..+++..+.+.++.
T Consensus 88 ~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 88 KDFQGSKLKVSLAR 101 (113)
T ss_dssp CEETTEECEEECSS
T ss_pred CccCCCEEEEEECC
Confidence 55555555555544
No 271
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=114.58 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=61.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
.++|||+|||+++|+++|+++|+.||.|.+|++ .. +..++.++|||||+|.+.++|+.|+.+++..+ ++..+.+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~-~g~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-IS--DRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL-LGVPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CC--SCCSSSCCCCEEEEESCGGGHHHHHHHTTEEE-TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEE-Ee--cCCCCccCcEEEEEeCcHHHHHHHHHcCCCEe-CCeEEEEE
Confidence 479999999999999999999999999999999 33 33457889999999999999999994444444 44444444
No 272
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.8e-13 Score=111.37 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCC-CccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSI-PVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~-~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
..+.++|||+|||+++|+++|+++|+.|| |.+|++ +.+ ..+ ++++|||||+|.+.++|+.|+.+++..+.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i-~~~--~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l- 86 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PRE--PSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI- 86 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEEC-CBC--SSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC-
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEE-ecC--CCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE-
Confidence 45679999999999999999999999999 999999 433 234 788999999999999999999555555545444
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 87 ~V~~a~ 92 (104)
T 1wi8_A 87 RVDVAD 92 (104)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 444433
No 273
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=9.5e-14 Score=116.91 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=66.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 689999996 69999999999999999999984 678999999999999999997 9999999999999998743
No 274
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=107.86 Aligned_cols=74 Identities=8% Similarity=0.279 Sum_probs=61.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~ 86 (405)
....++|||+|||+++|+++|+++|++||+|.+|++.. ++|||||+|.+.++|+.|+..+ +...+++..+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 56789999999999999999999999999999999931 4799999999999999999854 6655555554
Q ss_pred Eeec
Q psy14559 87 VTPY 90 (405)
Q Consensus 87 vv~~ 90 (405)
.+.+
T Consensus 80 ~v~~ 83 (85)
T 2ytc_A 80 NVKW 83 (85)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 4443
No 275
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.9e-14 Score=114.66 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHhccCCceEEEEEeeccCCC-CCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQ---TLFGYLGKVEDLRLYPIARDV-SIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr---~lFs~~G~I~~v~i~~~~~d~-~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
....++|||+|||+++|+++|+ ++|++||+|.+|++ +.+... ..++++|||||+|.+.++|+.|+..+|...+++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i-~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE-ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 4456899999999999999999 99999999999999 433211 123567999999999999999998766666666
Q ss_pred eeEEeecCCC
Q psy14559 84 ALVVTPYNSG 93 (405)
Q Consensus 84 ~~~vv~~~~~ 93 (405)
..+.+.++..
T Consensus 91 r~l~V~~a~~ 100 (111)
T 2cpi_A 91 RTLKASLGTT 100 (111)
T ss_dssp EEEEEESCCC
T ss_pred EEEEEEeccc
Confidence 6666666553
No 276
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=112.67 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=62.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc--CCccccce
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT--NTVFIDRA 84 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~--n~~~~~~~ 84 (405)
...++++|||+|||+.+|+++|+++|++||.|.+|.+ +. .+|||||+|.+.++|..|+..+ +...+++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LK--------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ET--------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EC--------CCCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 3467799999999999999999999999999999988 22 2899999999999999998643 34445555
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 82 ~l~V~~a~ 89 (101)
T 2cq1_A 82 PIYIQYSN 89 (101)
T ss_dssp ECEEEECS
T ss_pred EEEEEEcC
Confidence 55555544
No 277
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.3e-14 Score=113.98 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Ccccccee
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRAL 85 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~~ 85 (405)
..++++|||+|||+.+|+++|+++|++||+|.+|.+. . .+|||||+|.+.++|..|+..++ ...+++..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-P--------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-T--------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-C--------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 5568999999999999999999999999999999982 1 37999999999999999997432 33344444
Q ss_pred EEeecCC
Q psy14559 86 VVTPYNS 92 (405)
Q Consensus 86 ~vv~~~~ 92 (405)
+.+.+..
T Consensus 83 l~V~~a~ 89 (104)
T 1wex_A 83 AFFNYST 89 (104)
T ss_dssp CEEEECS
T ss_pred EEEEEcc
Confidence 4455443
No 278
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=8.4e-14 Score=116.55 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=63.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK---VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~---I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
....++|||+|||+++|+++|+++|+.||. |.+|+| +.+. . ++++|||||+|.+.++|+.|+.+++..+.++.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i-~~~~--~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTR--E-GRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEE-EECS--S-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEE-EECC--C-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 456799999999999999999999999999 899999 4433 2 78899999999999999999996554444444
Q ss_pred eEEee
Q psy14559 85 LVVTP 89 (405)
Q Consensus 85 ~~vv~ 89 (405)
+.|..
T Consensus 90 i~V~~ 94 (118)
T 2db1_A 90 IEVFK 94 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
No 279
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=113.63 Aligned_cols=83 Identities=8% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Cccccce
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~ 84 (405)
..+.++|||+|||+++|+++|+++|+.||. |.+|.+...+ ..++.++|||||+|.+.++|..|+..++ ...+++.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~--~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA--ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS--CTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC--CCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 456899999999999999999999999999 9999984233 3457889999999999999999998653 3555555
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 83 ~l~V~~a~ 90 (109)
T 2dis_A 83 QIAVDWAE 90 (109)
T ss_dssp CCEEEESC
T ss_pred eEEEEEcC
Confidence 55555544
No 280
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=108.59 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=62.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
++.+.++|||+|||+++|+++|+++|+.||+|.+|++. ++||||+|.+.++|+.|+..+|...+++..+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 46788999999999999999999999999999999992 6899999999999999997555554544555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.+..
T Consensus 73 ~v~~a~ 78 (90)
T 2dnq_A 73 NVEASK 78 (90)
T ss_dssp EEECSS
T ss_pred EEEECC
Confidence 555444
No 281
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=3.2e-13 Score=110.96 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=68.0
Q ss_pred CcEEEEeCCCC-----CCCHHHHHHHHhcCCCeeEEEEeccC---CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 166 RRTLVAINIEE-----SVSPQELVDFFQKVGTVNYIRFCTRE---NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~-----~~tee~L~~~F~~~G~I~~i~i~~~~---~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
.++|++.|+.. +-++++|++.|++||.|.+|.++.+. +.++|||||+|.+.++|.+|+. |||..+.||.|.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 78999999963 23789999999999999999998652 5789999999999999999998 999999999999
Q ss_pred Eeecc
Q psy14559 237 MFHST 241 (405)
Q Consensus 237 V~~a~ 241 (405)
|.++.
T Consensus 88 v~~a~ 92 (105)
T 2pe8_A 88 ACFYN 92 (105)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99985
No 282
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-13 Score=109.58 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++. .+ ..+++++|||||+|.+.++|+.|+.. ...+++..+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~--~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVK-KD--LKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE-EC--SSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEE-ec--CCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEE
Confidence 4567899999999999999999999999999999994 32 24688999999999999999999983 3345555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 87 v~~a~ 91 (103)
T 2cqg_A 87 CKLPN 91 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 55544
No 283
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=8.4e-14 Score=115.61 Aligned_cols=79 Identities=9% Similarity=0.051 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLG-KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G-~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
.+...++|||+|||+++|+++|+++|+.|| +|..+.+. . ..++|||||+|.+.++|+.|+..+|+..+++..
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~-~------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN-T------RDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS-S------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE-c------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 466778999999999999999999999999 99999882 1 236899999999999999999766655555555
Q ss_pred EEeecCC
Q psy14559 86 VVTPYNS 92 (405)
Q Consensus 86 ~vv~~~~ 92 (405)
+.+.+..
T Consensus 97 i~V~~a~ 103 (111)
T 2jvr_A 97 ITVERDD 103 (111)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 5555443
No 284
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=110.13 Aligned_cols=77 Identities=8% Similarity=0.140 Sum_probs=62.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc--ce
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID--RA 84 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~--~~ 84 (405)
...+.++|||+|||+++|+++|+++|+.||+|.+|++ .. .++||||+|.+.++|+.|+..+|...++ +.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VK--------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CS--------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eC--------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 3567799999999999999999999999999999998 21 2789999999999999999855544444 44
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 84 ~l~V~~a~ 91 (97)
T 1why_A 84 RLRVDFAK 91 (97)
T ss_dssp BCEEEECC
T ss_pred EEEEEECC
Confidence 45555443
No 285
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=110.54 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
..+.++|||+|||+++|+++|+ ++|+.||+|.+|++ +.++ . + ++||||+|.+.++|+.|+..+|...+++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i-~~~~--~-~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVEL-SPHT--D-Y--QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CSCC--S-T--TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEE-EeCC--C-C--CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 5567899999999999999999 99999999999999 4332 2 1 8899999999999999998666555555
Q ss_pred eeEEeecCC
Q psy14559 84 ALVVTPYNS 92 (405)
Q Consensus 84 ~~~vv~~~~ 92 (405)
..+.+.++.
T Consensus 80 r~l~V~~a~ 88 (96)
T 2dgx_A 80 KKILVSLAT 88 (96)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEcC
Confidence 555555544
No 286
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=113.81 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
.++|||+|||+++|+++|+++|+.||.|.+|+|. . +..++.++|||||+|.+.++|+.|+.. +...+++..+.+.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~--~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM-R--DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEE-C--CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-E--CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 4899999999999999999999999999999993 3 334678899999999999999999988 55555555555555
Q ss_pred CC
Q psy14559 91 NS 92 (405)
Q Consensus 91 ~~ 92 (405)
+.
T Consensus 103 a~ 104 (116)
T 1x4b_A 103 AV 104 (116)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 287
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=116.83 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.++++ +. +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PL--DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CC--CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-ee--cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 556899999999999999999999999999999999 33 334678899999999999999999976666555555555
Q ss_pred ee
Q psy14559 88 TP 89 (405)
Q Consensus 88 v~ 89 (405)
+.
T Consensus 137 v~ 138 (140)
T 2ku7_A 137 VN 138 (140)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 288
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.46 E-value=1.3e-13 Score=116.17 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||.|.+|.| +. +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NL--DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CB--CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 456789999999999999999999999999999999 33 334688899999999999999999975555445555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 96 v~~a~ 100 (126)
T 3ex7_B 96 VDWCF 100 (126)
T ss_dssp EEESE
T ss_pred EEEec
Confidence 55443
No 289
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9e-14 Score=116.80 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=61.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Cccccce
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRA 84 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~ 84 (405)
...+.++|||+|||+++|+++|+++|++||+|.+|++. . .+|||||+|.+.++|..|+..++ ...+++.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~--------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-K--------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-G--------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-C--------CCCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 35678999999999999999999999999999999993 2 27999999999999999997554 2344444
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 98 ~l~V~~a~ 105 (119)
T 2ad9_A 98 PIYIQFSN 105 (119)
T ss_dssp CCEEEECS
T ss_pred EEEEEEcc
Confidence 44444443
No 290
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=1.7e-13 Score=115.20 Aligned_cols=81 Identities=14% Similarity=0.057 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+.+|+++|+++|+.||+|.+|++ ..+. +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR---SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEE-ECCS---SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EECC---CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 556789999999999999999999999999999999 4332 578899999999999999999985555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 108 V~~a~ 112 (124)
T 2kt5_A 108 IQLVA 112 (124)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 54433
No 291
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=107.65 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=65.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.+...++|||+|||+++|+++|+++|+.| .|.+|++.. + .+++++|||||+|.+.++|+.|+. +|...+++..+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~-~---~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVR-N---AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEE-C---TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEE-C---CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 35678999999999999999999999999 999999943 2 357889999999999999999999 66555555555
Q ss_pred EeecC
Q psy14559 87 VTPYN 91 (405)
Q Consensus 87 vv~~~ 91 (405)
.+.++
T Consensus 80 ~v~~a 84 (91)
T 2dgw_A 80 EVFRE 84 (91)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55443
No 292
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.2e-13 Score=111.79 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
++...++|||+|||+++|+++|+++|+.||.|.++++. +++|||||+|.+.++|..|+..+|...+++..+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 35567999999999999999999999999999999992 358999999999999999997656555555555
Q ss_pred EeecC
Q psy14559 87 VTPYN 91 (405)
Q Consensus 87 vv~~~ 91 (405)
.+.++
T Consensus 94 ~V~~a 98 (101)
T 2la4_A 94 RTGWG 98 (101)
T ss_dssp CCCBC
T ss_pred EEEec
Confidence 55543
No 293
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=1.1e-13 Score=119.00 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK---VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~---I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
....++|||+|||+++|+++|+++|+.||. |.+|+| +.++ . ++++|||||+|.+.++|+.|+.+++..+.++.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i-~~d~--~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTR--E-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEE-EECS--S-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEE-EECC--C-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 456789999999999999999999999999 899999 4443 3 78999999999999999999994444444554
Q ss_pred eEEe
Q psy14559 85 LVVT 88 (405)
Q Consensus 85 ~~vv 88 (405)
+.|.
T Consensus 117 i~V~ 120 (136)
T 2hgl_A 117 IEVF 120 (136)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 294
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=5.6e-14 Score=119.63 Aligned_cols=81 Identities=10% Similarity=0.180 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--EEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc----cc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV----FI 81 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~----~~ 81 (405)
....++|||+|||+++|+++|+++|+.||.|.+ |+| +. |..+++++|||||+|.+. +|..|+..+|.. .+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i-~~--d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRV-IK--DKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEEC-CB--CSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEE-EE--cCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 456789999999999999999999999999977 888 43 345789999999999999 999999766665 55
Q ss_pred cceeEEeecCC
Q psy14559 82 DRALVVTPYNS 92 (405)
Q Consensus 82 ~~~~~vv~~~~ 92 (405)
++..+.+.++.
T Consensus 96 ~gr~l~V~~a~ 106 (131)
T 2m2b_A 96 DGKTINVEFAK 106 (131)
T ss_dssp GGCCCCCEECC
T ss_pred CCEEEEEEECC
Confidence 55555555544
No 295
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.6e-14 Score=117.97 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=63.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||.|.++.++... .+++++|||||+|.+.++|+.|+.+++..+.++.+.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~---~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG---PNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC---TTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC---CCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 3456899999999999999999999999999885553432 3688999999999999999999995555555555544
Q ss_pred ee
Q psy14559 88 TP 89 (405)
Q Consensus 88 v~ 89 (405)
..
T Consensus 99 ~~ 100 (124)
T 1wel_A 99 HP 100 (124)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 296
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.45 E-value=2.3e-13 Score=109.88 Aligned_cols=73 Identities=7% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.++.++|||+|||+ ++|+++|+++|+.||.|.+|++ .+|||||+|.+.++|..|+..+|+..+++..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 56789999999998 9999999999999999999999 27899999999999999998555555544444
Q ss_pred EeecC
Q psy14559 87 VTPYN 91 (405)
Q Consensus 87 vv~~~ 91 (405)
.+.+.
T Consensus 88 ~V~~a 92 (97)
T 2xnq_A 88 ILEVS 92 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 44443
No 297
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=6.6e-14 Score=114.47 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=60.7
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Cccccce
Q psy14559 8 PVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~ 84 (405)
..+.++|||+|||+ .+|+++|+++|++||+|.+|++. . .++||||+|.+.++|..|+..+| ...+++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-N--------KINEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-S--------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-c--------CCCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 55789999999999 99999999999999999999992 1 36899999999999999997543 2334444
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 83 ~l~V~~a~ 90 (102)
T 1x4d_A 83 PVRVHLSQ 90 (102)
T ss_dssp ECEEEEEC
T ss_pred EEEEEECC
Confidence 44444443
No 298
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.45 E-value=1.8e-13 Score=116.09 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceE--EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVE--DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL 85 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~--~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~ 85 (405)
+...++|||+|||+++|+++|+++|+.| .|. +|+| +.++ . ++++|||||+|.+.++|+.|+..++..+.++.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i-~~d~--~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITL-PVDP--E-GKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEEC-CCCS--S-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEE-EECC--C-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 4457899999999999999999999999 666 8888 4443 3 889999999999999999999987755556655
Q ss_pred EEee
Q psy14559 86 VVTP 89 (405)
Q Consensus 86 ~vv~ 89 (405)
.|..
T Consensus 114 ~V~~ 117 (126)
T 2hgm_A 114 EVFK 117 (126)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 4433
No 299
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=113.26 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=62.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
.++|||+|||+++|+++|+++|+.| .|.+|+| +.++ .++++|||||+|.+.++|+.|+.+++..+.++.+.|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i-~~d~---~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHL-LKDH---VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEE-CCCT---TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEE-EECC---CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 4799999999999999999999999 8999999 4433 37899999999999999999997666555555555533
No 300
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=110.32 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=61.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+.+|+++|+++|+.||+|.+|++ + +++|||||+|.+.++|+.|+..++...+++..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~--------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-H--------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-E--------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-e--------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 556789999999999999999999999999999999 2 2389999999999999999965554444444444
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 83 v~~a~ 87 (99)
T 2cpj_A 83 VRFAC 87 (99)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 44433
No 301
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=1.7e-13 Score=111.06 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||.|.+|++ +.+. +++++|||||+|.+.++|+.|+. ++..+.++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~---~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKI-ITDR---TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT---TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC---CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 445799999999999999999999999999999999 4432 58899999999999999999998 444444444443
No 302
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=9.8e-14 Score=117.31 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCce----EEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKV----EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I----~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
...++|||+|||+++|+++|+++|+.||+| .+|+| +.+. +++++|||||+|.+.++|+.|+..++..+.++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i-~~d~---~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILF-VTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEE-EECT---TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEE-EECC---CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE
Confidence 456899999999999999999999999986 68988 4332 588999999999999999999988554444444
Q ss_pred eEE
Q psy14559 85 LVV 87 (405)
Q Consensus 85 ~~v 87 (405)
+.+
T Consensus 97 i~V 99 (123)
T 2dha_A 97 IEL 99 (123)
T ss_dssp ECC
T ss_pred EEE
Confidence 333
No 303
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=112.12 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
....++|||+|||+++|+++|+++|+.|| |.+|++ ..+.+ .+++++|||||+|.+.++|..|+.+++..+.++.+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPS-NPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC-SCCTT-TTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EecCC-cCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence 45679999999999999999999999999 999999 33211 357889999999999999999995555554444443
No 304
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=6.2e-14 Score=110.99 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN 91 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~ 91 (405)
++|||+|||+++|+++|+++|+.||+|.+|++ +. +..++.++|||||+|.+.+ |..|+..+|+..+++..+.+.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL-IY--DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE-CC--CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE-EE--cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 68999999999999999999999999999999 33 3346788999999999999 99999766655555555544444
Q ss_pred C
Q psy14559 92 S 92 (405)
Q Consensus 92 ~ 92 (405)
.
T Consensus 78 ~ 78 (90)
T 2ki2_A 78 N 78 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 305
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.43 E-value=3e-13 Score=118.31 Aligned_cols=83 Identities=17% Similarity=0.301 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|+|.. + ..++.+++||||+|.+.++|+.|+..+|...+++..+.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~--~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL-D--KMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE-C--TTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe-c--CCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34679999999999999999999999999999999943 2 24678899999999999999999986555555556666
Q ss_pred eecCCC
Q psy14559 88 TPYNSG 93 (405)
Q Consensus 88 v~~~~~ 93 (405)
+.++..
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 655543
No 306
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=2.8e-13 Score=113.73 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=63.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY 90 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~ 90 (405)
.++|||+|||+++|+++|+++|+.||+|.+|++.. + ..++.++|||||+|.+.++|+.|+.+++..+.++ .+.+.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~--~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~-~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC-D--KFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGR-TIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE-E--CTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTE-ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe-c--CCCCCcccEEEEEECCHHHHHHHHhcCCCeECCe-EEEEEE
Confidence 58999999999999999999999999999999943 2 2467889999999999999999996555555444 444444
Q ss_pred CC
Q psy14559 91 NS 92 (405)
Q Consensus 91 ~~ 92 (405)
..
T Consensus 112 a~ 113 (124)
T 2jwn_A 112 KR 113 (124)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 307
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=113.86 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK---VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~---I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
....++|||+|||+++|+++|+++|+.||. |.+|+| +.+. . ++++|||||+|.+.++|+.|+.+++..+.++.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i-~~~~--~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF-LLNR--D-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEEC-CCCT--T-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEE-EECC--C-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 567899999999999999999999999998 899999 4433 3 78999999999999999999995554444444
Q ss_pred eEE
Q psy14559 85 LVV 87 (405)
Q Consensus 85 ~~v 87 (405)
+.+
T Consensus 84 i~V 86 (107)
T 2lmi_A 84 VEV 86 (107)
T ss_dssp CCC
T ss_pred EEE
Confidence 433
No 308
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=115.13 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
..+.++|||+|||+.+|+++|+ ++|++||+|.+|.+ +. +++++|||||+|.+.++|..|+..+|+..+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i-~~-----~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV-DL-----SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CC-----CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe-cc-----CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 4567899999999999999876 69999999999988 21 36789999999999999999996555544444
Q ss_pred eeEEeecCCC
Q psy14559 84 ALVVTPYNSG 93 (405)
Q Consensus 84 ~~~vv~~~~~ 93 (405)
..+.+.++..
T Consensus 100 r~l~V~~a~~ 109 (127)
T 2a3j_A 100 NPLVITFSET 109 (127)
T ss_dssp SCCEEEECCC
T ss_pred CEEEEEEccC
Confidence 4555555543
No 309
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.43 E-value=3.5e-13 Score=117.87 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++ +. +..++.++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i-~~--~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PR--DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEC-CC--CSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ee--cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 455799999999999999999999999999999999 43 334688999999999999999999976555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 144 v~~a~ 148 (158)
T 2kn4_A 144 VQMAR 148 (158)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 55443
No 310
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=106.72 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=62.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.....++|||+|||+++|+++|+++|+.||.|.+|++. ++||||+|.+.++|..|+..+|...+++..+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----------SSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 36678999999999999999999999999999999991 4599999999999999997655555555555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.+..
T Consensus 75 ~V~~a~ 80 (92)
T 2dgt_A 75 HVQLST 80 (92)
T ss_dssp EEEESS
T ss_pred EEEEcc
Confidence 555544
No 311
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=5e-13 Score=109.80 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc----
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR---- 83 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~---- 83 (405)
....++|||+|||+++|+++|+++|+.||+|.+|+| +. + |||||+|.+.++|+.|++.+|...+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i-~~--~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YR--D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-ET--T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-ec--C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 445789999999999999999999999999999999 22 1 899999999999999998666655555
Q ss_pred -eeEEeecCC
Q psy14559 84 -ALVVTPYNS 92 (405)
Q Consensus 84 -~~~vv~~~~ 92 (405)
..+.+.++.
T Consensus 82 ~~~i~V~~a~ 91 (108)
T 1x4c_A 82 TAYIRVKVDG 91 (108)
T ss_dssp EEEEEEEESS
T ss_pred ceEEEEEeCC
Confidence 555555444
No 312
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.8e-13 Score=111.24 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=60.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI 81 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~ 81 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.+. ++.++|||||+|.+.++|+.|+..+|...+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDS---SGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-EECS---SSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC---CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456799999999999999999999999999999999 4332 578899999999999999999975444444
No 313
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=4.1e-13 Score=106.69 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=49.3
Q ss_pred ccccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHH
Q psy14559 3 VDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS 72 (405)
Q Consensus 3 ~~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~A 72 (405)
+.........+|||+|||+++|+++|+++|++||+|.+|++ +. .++|||||+|.+.++|+.+
T Consensus 3 ~~~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i-~~-------~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 3 GSHHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFI-PK-------PFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CS-------SCCSEEEEEESCHHHHHHH
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-ee-------CCCCEEEEEECCHHHHHHH
Confidence 34455778899999999999999999999999999999999 32 2699999999999998843
No 314
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=107.30 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.+.+.++|||+|||+++|+++|+++|+.||.|.+|++. ++||||+|.+.++|+.|+..+|...+++..+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 36678999999999999999999999999999999991 4599999999999999998555555555555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 74 ~v~~a~ 79 (90)
T 2dnp_A 74 NVELST 79 (90)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 555444
No 315
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.42 E-value=3.2e-13 Score=109.84 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=62.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++ + ++||||+|.+.++|+.|++.+|...+++..+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~-~----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK-L----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE-C----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-E----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 567799999999999999999999999999999998 1 56999999999999999986555555555666
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 77 v~~a~ 81 (103)
T 2dgu_A 77 IVFAK 81 (103)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 65554
No 316
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7.4e-13 Score=106.78 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccC--CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYL--GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA 84 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~--G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~ 84 (405)
...+.++|||+|||+++|+++|+++|+.| |.|.+|++ .++||||+|.+.++|+.|+..+|...+++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-----------IRDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-----------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 35678999999999999999999999999 99999987 267999999999999999986665555566
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 80 ~l~v~~a~ 87 (99)
T 2cpd_A 80 PIEVTLAK 87 (99)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 66666554
No 317
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2e-13 Score=112.97 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=61.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+.+|+++|+++|++||.|.+|.+ + .+++||||+|.+.++|+.|++.+|...+++..+.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-P--------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-C--------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-e--------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 345689999999999999999999999999999988 2 2578999999999999999975555444444445
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
+.++
T Consensus 78 V~~a 81 (111)
T 1whx_A 78 LEWA 81 (111)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5443
No 318
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5e-13 Score=108.10 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||.| ++ +.+ .+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~-~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KV-PQN---QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---EC-CBC---SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EE-EEC---CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 5678999999999999999999999999987 34 222 3578899999999999999999986665555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 85 v~~a~ 89 (101)
T 2fc9_A 85 LELQG 89 (101)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55544
No 319
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.8e-13 Score=109.92 Aligned_cols=72 Identities=8% Similarity=0.257 Sum_probs=59.6
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccce
Q psy14559 7 APVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRA 84 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~ 84 (405)
...+.++|||+|||+ ++|+++|+++|+.||+|.+|++ ++|||||+|.+.++|+.|+.. ++..+.++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----------KNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-----------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 366889999999998 9999999999999999999999 278999999999999999975 555555655
Q ss_pred eEEee
Q psy14559 85 LVVTP 89 (405)
Q Consensus 85 ~~vv~ 89 (405)
+.|..
T Consensus 75 l~V~~ 79 (96)
T 2kvi_A 75 LILEV 79 (96)
T ss_dssp BCEEE
T ss_pred EEEEE
Confidence 55443
No 320
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4e-13 Score=110.36 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=64.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.....++|||+|||+++|+++|+++|+.||.|.+|++. . .+|||||+|.+.++|..|+..++...+++..+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-P--------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-T--------TTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-C--------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 35678999999999999999999999999999999992 2 27999999999999999997655555656666
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 92 ~v~~a~ 97 (109)
T 1x4g_A 92 KCYWGK 97 (109)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 666554
No 321
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.41 E-value=5.5e-13 Score=117.92 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+.+|+++|+++|+.||+|.+|.|.. +..++.++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe---cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34567899999999999999999999999999999943 234688999999999999999999976555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 146 V~~a~ 150 (165)
T 1rk8_A 146 VDWCF 150 (165)
T ss_dssp EEESE
T ss_pred EEEec
Confidence 55543
No 322
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.41 E-value=4.2e-13 Score=125.31 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..++|||+|||+++|+++|+++|+.|| +|.+|+|. . +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~-~--d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF-E--NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEE-E--CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEE-e--cCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 567899999999999999999999999 99999994 3 335788999999999999999999986665555544555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
|.++.
T Consensus 144 V~~a~ 148 (229)
T 3q2s_C 144 VTPVN 148 (229)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 54443
No 323
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=111.83 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=56.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCC-CCCccccEEEEEecchhhHHHHHhcc
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDV-SIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~-~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
+....++|||+|||+++|+++|+++|++||+|. +.+ +.+... .+++++|||||+|.+.++|+.|+..+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~-~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDW-PHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EEC-TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEE-eecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 356789999999999999999999999999999 766 332211 12688999999999999999999755
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=4.7e-13 Score=104.96 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=59.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYL----G-------KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~----G-------~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
..+.++|||+|||+++|+++|+++|+.| | +|.++++ . +++|||||+|.+.++|+.|+.++
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~--------~~kg~afV~f~~~~~a~~A~~l~ 73 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-N--------QDKNFAFLEFRSVDETTQAMAFD 73 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-C--------SSSSEEEEEESSHHHHHHHGGGT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-c--------CCCcEEEEEcCCHHHHHHHHhcC
Confidence 4568999999999999999999999999 8 9999998 2 23899999999999999999555
Q ss_pred CCccccceeEE
Q psy14559 77 NTVFIDRALVV 87 (405)
Q Consensus 77 n~~~~~~~~~v 87 (405)
+..+.++.+.+
T Consensus 74 g~~~~g~~l~V 84 (87)
T 2hzc_A 74 GIIFQGQSLKI 84 (87)
T ss_dssp TCEETTEECEE
T ss_pred CCEECCeEEEE
Confidence 55555555443
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.41 E-value=2.8e-13 Score=108.55 Aligned_cols=81 Identities=10% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID 82 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~ 82 (405)
+..+.++|||+|||+++|+++|+ ++|+.||.|.+|++. . ++.++|||||+|.+.++|..|+..+|+..++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-R-----SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-H-----HHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-c-----CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 35678999999999999999999 999999999999983 1 3567999999999999999999765555555
Q ss_pred ceeEEeecCCC
Q psy14559 83 RALVVTPYNSG 93 (405)
Q Consensus 83 ~~~~vv~~~~~ 93 (405)
+..+.+.++..
T Consensus 78 g~~l~v~~a~~ 88 (97)
T 1nu4_A 78 DKPMRIQYAKT 88 (97)
T ss_dssp TEECEEEECSS
T ss_pred CcEEEEEEccC
Confidence 55555555543
No 326
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1.6e-13 Score=114.01 Aligned_cols=75 Identities=9% Similarity=0.128 Sum_probs=59.9
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc--CCccccce
Q psy14559 8 PVKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT--NTVFIDRA 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~--n~~~~~~~ 84 (405)
..+.++|||+|||++ +|+++|+++|++||+|.+|++. +++|||||+|.+.++|+.|+..+ +...++++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 456899999999998 9999999999999999999992 24899999999999999999743 23334444
Q ss_pred eEEeecC
Q psy14559 85 LVVTPYN 91 (405)
Q Consensus 85 ~~vv~~~ 91 (405)
.+.+.++
T Consensus 93 ~l~V~~a 99 (112)
T 1x4f_A 93 CVKVDLS 99 (112)
T ss_dssp CCEEEEE
T ss_pred EEEEEEC
Confidence 4444433
No 327
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=5.4e-13 Score=109.89 Aligned_cols=75 Identities=9% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+....++|||+|||+++|+++|+++|+.||.|.+|++. +|||||+|.+.++|+.|+..+|+..+++..+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 35678999999999999999999999999999999992 7899999999999999997655555555555
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.+..
T Consensus 96 ~V~~a~ 101 (108)
T 2jvo_A 96 EVVYSK 101 (108)
T ss_dssp EEESCS
T ss_pred EEEEec
Confidence 555544
No 328
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.40 E-value=2.3e-13 Score=116.70 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=66.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||+|.+|++ +. +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~--~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PR--DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC-CC--CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345689999999999999999999999999999999 33 334678999999999999999999976555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 121 V~~a~ 125 (135)
T 2lea_A 121 VQMAR 125 (135)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 55544
No 329
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=108.82 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||.|. +++.. +.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34479999999999999999999999999997 66622 35699999999999999999976555555545455
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 88 V~~a~ 92 (97)
T 2e5j_A 88 VALAR 92 (97)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 54443
No 330
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=5.8e-13 Score=106.61 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=63.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.||.|..+ - .++.++|||||+|.+.++|..|+..++...+++..+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~-------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S-------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E-------ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C-------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4567999999999999999999999999998776 1 1467899999999999999999986666655555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 85 v~~a~ 89 (96)
T 1fjc_A 85 LYYTG 89 (96)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55543
No 331
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=1.2e-13 Score=111.89 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
.....++|||+|||+++|+++|+++|+.||.|.+ .+ .. +..+++++|||||+|.+.++|+.|+. +|...+++..+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~-~~--~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LA-VV--DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CC-CC--EEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EE-Ee--cCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 3557899999999999999999999999999988 33 22 22357789999999999999999999 55444444444
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 88 ~V~~a~ 93 (101)
T 1fj7_A 88 KLEKPK 93 (101)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 454443
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.39 E-value=2e-13 Score=117.82 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+...++|||+|||+++|+++|+++|+.|| |.+|+| +.++ .++++|||||+|.+.++|+.|+.+++..+.++.+.|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i-~~d~---~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI-EIGP---DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 117 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC-CCSS---SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EECC---CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence 34568999999999999999999999999 779988 4433 378999999999999999999976555555555444
Q ss_pred ee
Q psy14559 88 TP 89 (405)
Q Consensus 88 v~ 89 (405)
..
T Consensus 118 ~~ 119 (139)
T 2hgn_A 118 FL 119 (139)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 333
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=103.68 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=58.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|.+ +..+++ ||||+|.+.++|+.|+. +|...+++..+.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~-----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM-----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE-----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 456789999999999999999999999999999833 222232 99999999999999999 555555555444
Q ss_pred eec
Q psy14559 88 TPY 90 (405)
Q Consensus 88 v~~ 90 (405)
+.+
T Consensus 76 V~~ 78 (94)
T 2e5g_A 76 VRP 78 (94)
T ss_dssp CBC
T ss_pred EEE
Confidence 443
No 334
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.3e-13 Score=107.47 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=62.5
Q ss_pred cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccc
Q psy14559 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDR 83 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~ 83 (405)
.+....++|||+|||+++|+++|+++|+.||. |..+.+ . ++|||||+|.+.++|+.|++.+|. ..+++
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L---------KSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E---------ETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c---------CCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 34667899999999999999999999999999 676666 1 489999999999999999975555 55555
Q ss_pred eeEEeecCC
Q psy14559 84 ALVVTPYNS 92 (405)
Q Consensus 84 ~~~vv~~~~ 92 (405)
..+.+.++.
T Consensus 73 ~~l~v~~a~ 81 (93)
T 2cqh_A 73 KIMEVDYSV 81 (93)
T ss_dssp EECEEEECC
T ss_pred EEEEEEEcc
Confidence 555555544
No 335
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=6.5e-13 Score=124.58 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=68.2
Q ss_pred CcEEEEeCCCCCC---------CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee-----
Q psy14559 166 RRTLVAINIEESV---------SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL----- 230 (405)
Q Consensus 166 ~rtvfV~NLp~~~---------tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l----- 230 (405)
.+|||||||+..+ ++++|+++|++||+|.+|+++. ++|||||+|.+.++|+.|+. |+|..|
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 7899999999998 7999999999999999999964 58999999999999999998 999999
Q ss_pred -------CCeeEEEeeccC
Q psy14559 231 -------KGKTLQMFHSTQ 242 (405)
Q Consensus 231 -------~g~~i~V~~a~~ 242 (405)
.|+.|.|.+++.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-
T ss_pred ccccccCCCCEEEEEEccC
Confidence 899999999974
No 336
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=6.4e-13 Score=104.96 Aligned_cols=75 Identities=7% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+...++|||+|||+++|+++|+++|++| +|.++++ . +++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-D--------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-E--------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-e--------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 4567999999999999999999999999 9999998 2 4689999999999999999986666555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 72 V~~a~ 76 (88)
T 1wg1_A 72 VQLQP 76 (88)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 55443
No 337
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.1e-13 Score=109.68 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCce----EEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKV----EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I----~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
..+.++|||+|||+++|+++|+++|+.||.| ..+++. +++++|||||+|.+.++|+.|+..+|...+++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------CCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4567999999999999999999999999999 455551 46789999999999999999997655554555
Q ss_pred eeEEeecCC
Q psy14559 84 ALVVTPYNS 92 (405)
Q Consensus 84 ~~~vv~~~~ 92 (405)
..+.+.++.
T Consensus 95 ~~l~v~~a~ 103 (115)
T 2cpx_A 95 KILVIEFGK 103 (115)
T ss_dssp CBCEEEECC
T ss_pred cEEEEEEcc
Confidence 555555544
No 338
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.8e-12 Score=103.04 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|| ++|+++|+++|+.||+|.+|++ . .++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-D--------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-E--------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-c--------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 557799999996 9999999999999999999999 2 3589999999999999999976666666666666
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 81 v~~a~ 85 (97)
T 1x5p_A 81 VNIAR 85 (97)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 66654
No 339
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1e-12 Score=103.62 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=58.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..++++|||+|||+++|+++|+++|+.||+|.+|++ +. .++|||||+|.+.++|+.|... ...+++..+.
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~-------~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~ 71 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI-PK-------PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVH 71 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC-CS-------SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEE-ec-------CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEE
Confidence 456799999999999999999999999999999999 22 2589999999999999865432 2333444444
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 72 v~~a~ 76 (88)
T 1wf0_A 72 ISNAE 76 (88)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 54433
No 340
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.36 E-value=1e-12 Score=117.89 Aligned_cols=81 Identities=12% Similarity=0.027 Sum_probs=66.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
+..+.++|||+|||+.+|+++|+++|+.||+|.+|.| ..+ . ++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d--~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYD--R-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE-CCC--T-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEC--C-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 3556799999999999999999999999999999999 433 2 57889999999999999999998555555555555
Q ss_pred EeecC
Q psy14559 87 VTPYN 91 (405)
Q Consensus 87 vv~~~ 91 (405)
.+.++
T Consensus 160 ~V~~a 164 (177)
T 2f3j_A 160 DIQLV 164 (177)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
No 341
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.36 E-value=1.1e-12 Score=107.83 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 9 VKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 9 ~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
...++|||+|||++ +|+++|+++|+.||+|.+|++ ++|||||+|.+.++|+.|+..++...+++..+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34589999999999 999999999999999999988 379999999999999999965555545455555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.+..
T Consensus 94 V~~a~ 98 (110)
T 1wf1_A 94 INMAG 98 (110)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 55443
No 342
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.2e-12 Score=105.04 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=65.6
Q ss_pred CcEEEEeCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559 166 RRTLVAINIEESVS-----------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK 233 (405)
Q Consensus 166 ~rtvfV~NLp~~~t-----------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~ 233 (405)
.++|+|.||....+ +++|+++|++||.|.+|.+.. ..++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~--~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD--RHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEET--TCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEec--CCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 78999999954432 589999999999999997643 2479999999999999999998 999999999
Q ss_pred eEEEeeccC
Q psy14559 234 TLQMFHSTQ 242 (405)
Q Consensus 234 ~i~V~~a~~ 242 (405)
+|+|.++..
T Consensus 93 ~l~v~~a~~ 101 (112)
T 2dit_A 93 QITAQAWDG 101 (112)
T ss_dssp ECEEEECCS
T ss_pred EEEEEEeCC
Confidence 999999864
No 343
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=8.4e-13 Score=109.92 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCCCcEEEE--cCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559 8 PVKTKVVQV--ANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV 79 (405)
Q Consensus 8 ~~~~~tLfV--gNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~ 79 (405)
..++++||| +||++++|+++|+++|++||+|.+|.+ +. .+|||||+|.+.++|+.|+..+|+.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i-~~--------~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PP--------NKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-CT--------TCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE-eC--------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 456889999 779999999999999999999999988 21 3799999999999999999755544
No 344
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.35 E-value=1.4e-12 Score=113.33 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
....++|||+|||+++|+++|+++|+.||+|.+|++ +.+ ++|||||+|.+.++|..|+..+|...+++..+.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-ARN-------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE-CSS-------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-eeC-------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 556799999999999999999999999999999999 321 589999999999999999975444444444444
Q ss_pred eecC
Q psy14559 88 TPYN 91 (405)
Q Consensus 88 v~~~ 91 (405)
+.+.
T Consensus 142 v~~a 145 (150)
T 2i2y_A 142 VELS 145 (150)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 4443
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=2.4e-12 Score=116.99 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP 89 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~ 89 (405)
.++|||+|||+++|+++|+++|+.||+|.+|++ +.+. ++.++|||||+|.+.++|+.|+..++..+.++.+.|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i-~~~~---~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTL---HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE-EECT---TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE-EECC---CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 489999999999999999999999999999999 4433 37789999999999999999999888766666665544
No 346
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=2.7e-12 Score=113.33 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=61.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc-c-cee
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI-D-RAL 85 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~-~-~~~ 85 (405)
+....+|||+||++.+|+++|+++|++||+|.+|+++.+ .+++||||+|.+.++|+.|+..+|+..+ + +..
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~ 115 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 115 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-------SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE
Confidence 445677999999999999999999999999999999421 2478999999999999999975555444 3 244
Q ss_pred EEeecCC
Q psy14559 86 VVTPYNS 92 (405)
Q Consensus 86 ~vv~~~~ 92 (405)
+.+.+..
T Consensus 116 L~V~~Ak 122 (164)
T 1sjr_A 116 LRIDFSK 122 (164)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 5555544
No 347
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=5.2e-13 Score=109.41 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=62.6
Q ss_pred EeCCCCCCCHHHHHHHH------------hcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559 171 AINIEESVSPQELVDFF------------QKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ 236 (405)
Q Consensus 171 V~NLp~~~tee~L~~~F------------~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~ 236 (405)
+.|||+.+++++|++.| ++||.|.+|.++.+ .+.++|||||+|.+.++|.+|+. |||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 66888888888887777 99999999999766 56789999999999999999998 999999999999
Q ss_pred Eeec
Q psy14559 237 MFHS 240 (405)
Q Consensus 237 V~~a 240 (405)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 348
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=114.76 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=66.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--------LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV 79 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--------v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~ 79 (405)
..+.++|||+|||+++|+++|+++|+.||.|.+ |++ +. +..+++++|||||+|.+.++|+.|+..+|..
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YT--DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 457899999999999999999999999999999 777 33 2245788999999999999999999865555
Q ss_pred cccceeEEeecCC
Q psy14559 80 FIDRALVVTPYNS 92 (405)
Q Consensus 80 ~~~~~~~vv~~~~ 92 (405)
.+++..+.+.++.
T Consensus 81 ~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 81 EFSGNPIKVSFAT 93 (116)
Confidence 5555555555443
No 349
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=102.91 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEE-EeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLR-LYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~-i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~ 86 (405)
....++|||+|||+++|+++|+++|+.||.|.+|+ + +.++ ..+.|||+|.+.++|+.|+..+|...+++..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i-~~~~------~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQV-NTDS------ETAVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEE-CCSS------SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEe-ecCC------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34579999999999999999999999999999995 6 4332 23349999999999999997555544444444
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
.+.++.
T Consensus 85 ~V~~a~ 90 (96)
T 2e44_A 85 KVAYIP 90 (96)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 554443
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.32 E-value=3.1e-13 Score=116.47 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=64.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEE--------EEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDL--------RLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV 79 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v--------~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~ 79 (405)
..++++|||+|||+++|+++|+++|+.||.|.++ ++ . .+++++|||||+|.+.++|..|+..+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~-----~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-M-----KEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-E-----EETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-c-----cCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 4567899999999999999999999999998774 33 1 24678999999999999999999865555
Q ss_pred cccceeEEeecCCC
Q psy14559 80 FIDRALVVTPYNSG 93 (405)
Q Consensus 80 ~~~~~~~vv~~~~~ 93 (405)
.+++..+.+.++..
T Consensus 116 ~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 116 VLFGKPMVVQFARS 129 (143)
T ss_dssp EETTEECEEEECCC
T ss_pred EeCCcEEEEEECCC
Confidence 55555555555543
No 351
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=102.42 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
..+.++|||+|||+++|+++|+++|+.|+ +|+++. +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 56779999999999999999999999885 455522 224578899999999999999999986555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 86 V~~a~ 90 (102)
T 2fc8_A 86 LDWAK 90 (102)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 55544
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=5.8e-12 Score=103.33 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=66.1
Q ss_pred CcEEEEeCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeccC----CCCCcEEEEEECCHHHHHHHHH-hCCcee
Q psy14559 166 RRTLVAINI--EESVS--------PQELVDFFQKVGTVNYIRFCTRE----NDTNKYALVEFSDQACVIPALK-LNGTNL 230 (405)
Q Consensus 166 ~rtvfV~NL--p~~~t--------ee~L~~~F~~~G~I~~i~i~~~~----~~~rg~afV~F~~~e~A~~Al~-lng~~l 230 (405)
.+.|.+.|+ |.+.. +++|++.|++||.|.+|.|+.+. +.++|||||+|.+.++|.+|+. |||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 678999998 43443 36899999999999999997652 3579999999999999999998 999999
Q ss_pred CCeeEEEeecc
Q psy14559 231 KGKTLQMFHST 241 (405)
Q Consensus 231 ~g~~i~V~~a~ 241 (405)
.||+|+|.++.
T Consensus 85 ~GR~i~v~~~~ 95 (105)
T 3v4m_A 85 ANRVVVTKYCD 95 (105)
T ss_dssp TTEECEEEEEC
T ss_pred CCCEEEEEEeC
Confidence 99999999875
No 353
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.30 E-value=4.4e-12 Score=129.24 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT 88 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv 88 (405)
.+.++|||+|||+.+|+++|+++|+.||.|.+|.|+ . +..+++++|||||+|.+.++|..|+..+|+..+++..+.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~-~--d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMV-Y--SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEee-c--cCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 346899999999999999999999999999999993 3 3346889999999999999999999877777777777777
Q ss_pred ecCCC
Q psy14559 89 PYNSG 93 (405)
Q Consensus 89 ~~~~~ 93 (405)
.++.+
T Consensus 177 ~~a~~ 181 (437)
T 3pgw_S 177 DVERG 181 (437)
T ss_pred EEeCC
Confidence 76654
No 354
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.28 E-value=2.7e-12 Score=106.76 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccce
Q psy14559 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRA 84 (405)
Q Consensus 9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~ 84 (405)
...++|||+|||+++|+++|+++|+.||+|.+|.| .. . |||||+|.+.++|+.|++.+|. .+.++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~--------~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YR--------D-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-CT--------T-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ec--------C-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35689999999999999999999999999999999 21 1 8999999999999999985554 444444
No 355
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.27 E-value=1.1e-11 Score=105.55 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=59.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccE-EEEEecchhhHHHHHhccCC-ccccc-e
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRI-CYVKFFDEKCVGISQHLTNT-VFIDR-A 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~-aFV~F~~~e~A~~Al~~~n~-~~~~~-~ 84 (405)
+.....|||+||++.+|+++|+++|++||+|.+|++..+ .+|+ |||+|.+.++|+.|++.+|+ .+.++ .
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 345567889999999999999999999999999988431 2677 99999999999999975554 44442 4
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.+..
T Consensus 97 ~LrI~~ak 104 (130)
T 3zzy_A 97 TLRIDFSK 104 (130)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 44455443
No 356
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=1.2e-11 Score=104.46 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccE-EEEEecchhhHHHHHhccCC-ccccc-e
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRI-CYVKFFDEKCVGISQHLTNT-VFIDR-A 84 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~-aFV~F~~~e~A~~Al~~~n~-~~~~~-~ 84 (405)
+.....|||+||++.+|+++|+++|++||+|.+|+++. + .|| |||+|.+.++|..|+..+|+ .+.++ .
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--R-------NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--S-------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--C-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 33445578999999999999999999999999999932 1 375 99999999999999975554 45443 3
Q ss_pred eEEeecCC
Q psy14559 85 LVVTPYNS 92 (405)
Q Consensus 85 ~~vv~~~~ 92 (405)
.+.+.++.
T Consensus 93 ~l~V~~Ak 100 (124)
T 2e5i_A 93 TLKIEYAR 100 (124)
T ss_dssp EEEEECCS
T ss_pred EEEEEEec
Confidence 44444443
No 357
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.1e-11 Score=104.53 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=60.1
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecc----hhh----HHHHHh--ccC
Q psy14559 12 KVVQVANI----APQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD----EKC----VGISQH--LTN 77 (405)
Q Consensus 12 ~tLfVgNL----p~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~----~e~----A~~Al~--~~n 77 (405)
..|||+|| |+.+|+++|+++|+.||+|.+|.++. |..|+.++|||||+|.+ +++ |..|+. .+|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~---Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFN---DPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEE---CTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 99999999999999999999999944 44689999999999996 433 677766 556
Q ss_pred CccccceeEEeec
Q psy14559 78 TVFIDRALVVTPY 90 (405)
Q Consensus 78 ~~~~~~~~~vv~~ 90 (405)
+..++++.+.+..
T Consensus 80 g~~I~Gr~irV~l 92 (136)
T 2j8a_A 80 GCFIMGFKFEVIL 92 (136)
T ss_dssp CEEETTEEEEEEE
T ss_pred CCeecCcEEEEEE
Confidence 6666555554443
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.24 E-value=9.5e-12 Score=104.59 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=60.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV 87 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v 87 (405)
+...++|||+|| ++|+++|+++|+.||+|.+|.+ . .++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~--------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-D--------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-E--------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-e--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 557799999996 6999999999999999999999 2 3589999999999999999965555555555555
Q ss_pred eecCC
Q psy14559 88 TPYNS 92 (405)
Q Consensus 88 v~~~~ 92 (405)
+.++.
T Consensus 105 V~~a~ 109 (121)
T 2bz2_A 105 VNIAR 109 (121)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 55544
No 359
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.24 E-value=2.2e-11 Score=99.86 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCCC-----CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559 7 APVKTKVVQVANIAP-----QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI 81 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~-----~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~ 81 (405)
.+.++++|+|+||.. .-++++|+++|++||+|.+|+| +.+++ .++.++|+|||+|.+.++|..|++.+|+..+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i-~~~~~-~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVI-FEIPG-APDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEE-EECSS-CCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEE-ecCCC-CCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 356789999999973 3489999999999999999999 44321 1256899999999999999999987666666
Q ss_pred cceeEEeecCC
Q psy14559 82 DRALVVTPYNS 92 (405)
Q Consensus 82 ~~~~~vv~~~~ 92 (405)
+++.+.+.++.
T Consensus 82 ~Gr~i~v~~a~ 92 (105)
T 2pe8_A 82 GGRVVKACFYN 92 (105)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEcC
Confidence 66666666554
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=3e-11 Score=101.26 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=65.9
Q ss_pred CcEEEEeCCCC--CC---CHHHHHHHHhcCCCeeEEEEeccC------CCCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559 166 RRTLVAINIEE--SV---SPQELVDFFQKVGTVNYIRFCTRE------NDTNKYALVEFSDQACVIPALK-LNGTNLKGK 233 (405)
Q Consensus 166 ~rtvfV~NLp~--~~---tee~L~~~F~~~G~I~~i~i~~~~------~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~ 233 (405)
.++|++.|+-. ++ -+++|++.|++||+|.+|.|+.+. +.++||+||+|.+.++|.+|+. |||..|.||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 68999999832 22 368999999999999999997652 3467999999999999999998 999999999
Q ss_pred eEEEeecc
Q psy14559 234 TLQMFHST 241 (405)
Q Consensus 234 ~i~V~~a~ 241 (405)
.|.|.++.
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99999875
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=1.1e-11 Score=116.12 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559 8 PVKTKVVQVANIAPQA---------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~v---------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
....++|||+||+..+ |+++|+++|++||+|++|+++. ++|||||+|.+.++|+.|+..++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhCC
Confidence 5578999999999998 8999999999999999999932 489999999999999999965544
Q ss_pred ccc------------cceeEEeecCCC
Q psy14559 79 VFI------------DRALVVTPYNSG 93 (405)
Q Consensus 79 ~~~------------~~~~~vv~~~~~ 93 (405)
..+ ++..+.|.|+..
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CEEeccccccccccCCCCEEEEEEccC
Confidence 433 555666666653
No 362
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=97.32 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=56.2
Q ss_pred CCCCcE-EEEcCCCCCCCHHH----HHHHhccC-CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCcc
Q psy14559 8 PVKTKV-VQVANIAPQATRDQ----MQTLFGYL-GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVF 80 (405)
Q Consensus 8 ~~~~~t-LfVgNLp~~vTeed----Lr~lFs~~-G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~ 80 (405)
.+++.| |||+|||+++++++ |+++|+.| |+|.+| + .|+|||.|.+.++|+.|++ +++..+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------t---gG~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------T---GCSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------C---TTCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------e---cCEEEEEECCHHHHHHHHHHhcCCcc
Confidence 345666 99999999999998 55899999 599987 1 2999999999999999996 556667
Q ss_pred ccceeEEee
Q psy14559 81 IDRALVVTP 89 (405)
Q Consensus 81 ~~~~~~vv~ 89 (405)
+++.+.+--
T Consensus 72 ~gr~i~v~~ 80 (96)
T 2diu_A 72 FGNRIIVSF 80 (96)
T ss_dssp SSSCCEEES
T ss_pred CCceEEEEe
Confidence 777666544
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=4.1e-11 Score=118.04 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=63.3
Q ss_pred cCcEEEEeC--CCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC---Ce--eEE
Q psy14559 165 IRRTLVAIN--IEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK---GK--TLQ 236 (405)
Q Consensus 165 ~~rtvfV~N--Lp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~--~i~ 236 (405)
..++||||| |++.+|+++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++ |||..+. |+ .|.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 378999999 588999999999999999999987742 58999999999999999999 9999883 45 577
Q ss_pred Eeecc
Q psy14559 237 MFHST 241 (405)
Q Consensus 237 V~~a~ 241 (405)
+.+..
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 77764
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-10 Score=92.99 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559 176 ESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS 243 (405)
Q Consensus 176 ~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~ 243 (405)
.++++++|+++|++||.|.+|.++ +.++|||||+|.+.++|..|+. +++ +.|++|+|.+++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999996 4789999999999999999998 554 67999999998744
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.14 E-value=2e-10 Score=95.54 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=63.0
Q ss_pred CcEEEEeCCCCCCC----------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559 166 RRTLVAINIEESVS----------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234 (405)
Q Consensus 166 ~rtvfV~NLp~~~t----------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~ 234 (405)
.+.|.+.|+=..-. +++|++.|++||.|.+|.+..++ ++|||||+|.+.++|.+|+. |||..|+||.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 56788888733221 35899999999999999986553 58999999999999999998 9999999999
Q ss_pred EEEeecc
Q psy14559 235 LQMFHST 241 (405)
Q Consensus 235 i~V~~a~ 241 (405)
|.|.++.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999975
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.10 E-value=1.2e-10 Score=95.39 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=64.1
Q ss_pred CCCcEEEEcCC--CCCC--------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559 9 VKTKVVQVANI--APQA--------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 9 ~~~~tLfVgNL--p~~v--------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
.++++|.+.|+ |... .+++|++.|++||+|.+|+| +.+.+..++.++|+|||+|.+.++|..|++.+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i-~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC-CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE-eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 47899999998 3333 34799999999999999999 5544222346799999999999999999987777
Q ss_pred ccccceeEEeecCC
Q psy14559 79 VFIDRALVVTPYNS 92 (405)
Q Consensus 79 ~~~~~~~~vv~~~~ 92 (405)
..++++.+.+.+++
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 66666666665543
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2e-10 Score=94.80 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCCCC-----------HHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 8 PVKTKVVQVANIAPQAT-----------RDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vT-----------eedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
+.++++|+|+||..... +++|+++|++||+|.+|.| +. + .++|||||+|.+.++|+.|+..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~-~-----~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD-R-----HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET-T-----CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec-C-----CCCEEEEEEECCHHHHHHHHHHc
Confidence 66789999999954432 6899999999999999976 32 1 26999999999999999999766
Q ss_pred CCccccceeEEeecCC
Q psy14559 77 NTVFIDRALVVTPYNS 92 (405)
Q Consensus 77 n~~~~~~~~~vv~~~~ 92 (405)
|+..+++..+.+.++.
T Consensus 85 ng~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 85 DGRWFGGRQITAQAWD 100 (112)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCcEEEEEEeC
Confidence 6666666666666554
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.03 E-value=2.4e-10 Score=112.53 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=55.0
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559 8 PVKTKVVQVAN--IAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV 79 (405)
Q Consensus 8 ~~~~~tLfVgN--Lp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~ 79 (405)
..++++|||+| |+..+||++|+++|++||+|.+|.+ + .++|||||+|.+.++|+.|+..+|+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~--------~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-P--------PNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-C--------TTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-e--------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 56789999999 5789999999999999999999887 2 14899999999999999999765543
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.97 E-value=9.4e-10 Score=92.05 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhccCCceEEEEEeeccCCC--CCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559 9 VKTKVVQVANIAP-----QATRDQMQTLFGYLGKVEDLRLYPIARDV--SIPVQSRICYVKFFDEKCVGISQHLTNTVFI 81 (405)
Q Consensus 9 ~~~~tLfVgNLp~-----~vTeedLr~lFs~~G~I~~v~i~~~~~d~--~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~ 81 (405)
.++++|+++|+-. .-.+++|++.|++||+|.+|+| +.+... .++.++|+|||+|.+.++|..|++.+|+..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I-~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVII-YQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEE-EEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEE-eecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4789999999842 2347999999999999999999 443321 1356789999999999999999987777777
Q ss_pred cceeEEeecCC
Q psy14559 82 DRALVVTPYNS 92 (405)
Q Consensus 82 ~~~~~vv~~~~ 92 (405)
+++.+.+.++.
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 66666665544
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.94 E-value=3.1e-10 Score=92.74 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=53.8
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 16 VANIAPQATRDQMQTLF------------GYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 16 VgNLp~~vTeedLr~lF------------s~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
+.|||..+|+++|++.| ++||+|.+|++ +.+. .++++|||||+|.+.++|..|+..+|+..+++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i-~~~~---~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDNL---GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCSS---SSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEE-EeCC---CCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56677778888887766 99999999999 4332 36789999999999999999997666555555
Q ss_pred eeEEee
Q psy14559 84 ALVVTP 89 (405)
Q Consensus 84 ~~~vv~ 89 (405)
+.+.+.
T Consensus 96 r~i~v~ 101 (104)
T 1jmt_A 96 QPIHAE 101 (104)
T ss_dssp EECCEE
T ss_pred EEEEEE
Confidence 554443
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.7e-09 Score=83.66 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=60.7
Q ss_pred CcEEEEeCCCC----CCCH----HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEE
Q psy14559 166 RRTLVAINIEE----SVSP----QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQM 237 (405)
Q Consensus 166 ~rtvfV~NLp~----~~te----e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V 237 (405)
..||+|.-.+. +.-. .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|+.|||..+.||.|+|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d------~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED------KMWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS------SEEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC------CEEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 56888887762 3333 679999999999999999654 389999999999999999999999999999
Q ss_pred eeccC
Q psy14559 238 FHSTQ 242 (405)
Q Consensus 238 ~~a~~ 242 (405)
+.++.
T Consensus 81 ~lkt~ 85 (91)
T 2dnr_A 81 ALKSP 85 (91)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99863
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=6.8e-09 Score=84.23 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=57.8
Q ss_pred CCCCcEEEEcCCC-------CCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcc
Q psy14559 8 PVKTKVVQVANIA-------PQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVF 80 (405)
Q Consensus 8 ~~~~~tLfVgNLp-------~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~ 80 (405)
.....+|.|.-.. ..+|+++|+++|++||+|.+|.+. ++++|||||+|.+.++|+.|++..+. +
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~-~ 77 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG-L 77 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB-C
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC-C
Confidence 3346778887765 468999999999999999999992 34699999999999999999976443 3
Q ss_pred ccceeEEeecCC
Q psy14559 81 IDRALVVTPYNS 92 (405)
Q Consensus 81 ~~~~~~vv~~~~ 92 (405)
.++.+ .+.+..
T Consensus 78 ~g~~l-~V~~a~ 88 (100)
T 2d9o_A 78 VDNPL-KISWLE 88 (100)
T ss_dssp SSSBC-EEECSS
T ss_pred CCCeE-EEEEcc
Confidence 44444 444443
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.9e-08 Score=84.18 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECC-HHHHHHHHH-hC--CceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSD-QACVIPALK-LN--GTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~-~e~A~~Al~-ln--g~~l~g~~i~V~~a 240 (405)
+..|||+||+++ ++.++|+++|++||+|.+|.+..+. ..|||.|.+ .++|..|+. +| |..|.|..++++..
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 678999999999 9999999999999999999996542 269999999 889999988 74 68999998888764
Q ss_pred c
Q psy14559 241 T 241 (405)
Q Consensus 241 ~ 241 (405)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.78 E-value=1.3e-08 Score=84.62 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=62.4
Q ss_pred cCCCCCcEEEEcCCCCCC----------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc
Q psy14559 6 VAPVKTKVVQVANIAPQA----------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL 75 (405)
Q Consensus 6 ~~~~~~~tLfVgNLp~~v----------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~ 75 (405)
..+-++++|.+.|+=..- .+++|++.|++||.|.+|.+ +.+ ..+|+|||+|.+.++|..|++.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~~~------~~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-DKN------SAQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-CTT------CTTCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-ecC------CCcEEEEEEECCHHHHHHHHHH
Confidence 346678999999975322 24588999999999999999 332 2489999999999999999987
Q ss_pred cCCccccceeEEeecCC
Q psy14559 76 TNTVFIDRALVVTPYNS 92 (405)
Q Consensus 76 ~n~~~~~~~~~vv~~~~ 92 (405)
+|+..++++.+.+.++.
T Consensus 75 lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 75 LHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HTTCEETTEECEEEEEC
T ss_pred hCCCEECCEEEEEEEEc
Confidence 77777766666666544
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2.2e-08 Score=79.63 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=60.4
Q ss_pred CcEEEEeCCCCC------CCH---HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEE
Q psy14559 166 RRTLVAINIEES------VSP---QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQ 236 (405)
Q Consensus 166 ~rtvfV~NLp~~------~te---e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~ 236 (405)
..||+|.-++++ ..+ .+|.+.|++||+|..+++..+. +||+|.+.++|.+|+.|||..+.||.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAVK 88 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEEE
Confidence 569999988753 222 5699999999999999997654 9999999999999999999999999999
Q ss_pred Eeecc
Q psy14559 237 MFHST 241 (405)
Q Consensus 237 V~~a~ 241 (405)
|+...
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98753
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=8e-08 Score=80.45 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=59.3
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecc-hhhHHHHHhcc--CCccccc
Q psy14559 8 PVKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD-EKCVGISQHLT--NTVFIDR 83 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~-~e~A~~Al~~~--n~~~~~~ 83 (405)
-...+.|||+||++. +|+++|+++|+.||+|..|.+ ..+ ...|||.|.+ ..+|..|+... +...+.+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g--------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRG--------AKEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTT--------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecC--------CCEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 456799999999999 999999999999999999999 221 2259999999 78888887543 3555555
Q ss_pred eeEEeecCCC
Q psy14559 84 ALVVTPYNSG 93 (405)
Q Consensus 84 ~~~vv~~~~~ 93 (405)
....+....|
T Consensus 86 ~~~~~evL~G 95 (121)
T 1owx_A 86 KEVTWEVLEG 95 (121)
T ss_dssp SSEEEEECCH
T ss_pred cEEEEEECCC
Confidence 5555554444
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=8e-08 Score=88.38 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCHHHHHHHHhcCCCeeEEEEecc------CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559 178 VSPQELVDFFQKVGTVNYIRFCTR------ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST 241 (405)
Q Consensus 178 ~tee~L~~~F~~~G~I~~i~i~~~------~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~ 241 (405)
-.+++|++.|++||.|.++.++.+ ++.++|++||+|.+.++|.+|+. |||..+.||.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356899999999999999999743 34789999999999999999999 99999999999999975
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=3.9e-06 Score=66.28 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=54.3
Q ss_pred CCCCcEEEEcCCCC----CCCH----HHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559 8 PVKTKVVQVANIAP----QATR----DQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV 79 (405)
Q Consensus 8 ~~~~~tLfVgNLp~----~vTe----edLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~ 79 (405)
.++..||+|.-.+. +.-. .+|.+.|++||+|..+++ .. +.+||+|.+.++|.+|+.+++..
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~-~~----------d~~fVtF~d~~sAlaAi~mnG~~ 72 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRF-VE----------DKMWVTFLEGSSALNVLSLNGKE 72 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEE-CS----------SSEEEEESSHHHHHHGGGGTTCE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEE-ec----------CCEEEEECChHHHHHHHhcCCeE
Confidence 45678888888772 3444 668899999999999999 22 22999999999999999966666
Q ss_pred cccceeEEee
Q psy14559 80 FIDRALVVTP 89 (405)
Q Consensus 80 ~~~~~~~vv~ 89 (405)
+.++.+.+-.
T Consensus 73 v~Gr~LkV~l 82 (91)
T 2dnr_A 73 LLNRTITIAL 82 (91)
T ss_dssp ETTEEEEEEE
T ss_pred eCCeEEEEEe
Confidence 6666666544
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=1e-05 Score=65.72 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=63.6
Q ss_pred cCcEEEEeCCCCCCCHHHHHHHHhcC-----CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559 165 IRRTLVAINIEESVSPQELVDFFQKV-----GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF 238 (405)
Q Consensus 165 ~~rtvfV~NLp~~~tee~L~~~F~~~-----G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~ 238 (405)
..++|=+-|||..+++..++.+.+.+ |.|..+.+..|- +-|+|+|.+...|-+|.. |+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 37899999999999999999999999 999999997653 359999999999988864 99999999999986
Q ss_pred e
Q psy14559 239 H 239 (405)
Q Consensus 239 ~ 239 (405)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.05 E-value=7.3e-06 Score=75.11 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=60.8
Q ss_pred CCcEEEEcCCC-----CCCCHHHHHHHhccCCceEEEEEeecc-CCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559 10 KTKVVQVANIA-----PQATRDQMQTLFGYLGKVEDLRLYPIA-RDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR 83 (405)
Q Consensus 10 ~~~tLfVgNLp-----~~vTeedLr~lFs~~G~I~~v~i~~~~-~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~ 83 (405)
....+.+.|+- ..-.+++|++.|++||+|.++.+.... .+..++.++|++||+|.+.++|.+|+..+|+.++++
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34555555543 234678999999999999999993221 122345789999999999999999998777777766
Q ss_pred eeEEeecCC
Q psy14559 84 ALVVTPYNS 92 (405)
Q Consensus 84 ~~~vv~~~~ 92 (405)
+.+.+.+++
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 666665544
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=6.6e-06 Score=65.35 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCCCcEEEEcCCCCC-----CCH----HHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559 8 PVKTKVVQVANIAPQ-----ATR----DQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT 78 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~-----vTe----edLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~ 78 (405)
.++..||+|.-+++. .-+ .+|.+.|+.||+|..+++ ..++ +||+|.+.++|.+|+++++.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~-v~d~----------~fVtF~d~~sAl~AI~ldG~ 80 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRI-NQGQ----------MLVTFADSHSALSVLDVDGM 80 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEE-ETTE----------EEEECSCSHHHHHHHHGGGS
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEE-ecCc----------EEEEEcChHHHHHHHhcCCe
Confidence 457889999998743 223 568889999999999999 3221 99999999999999996666
Q ss_pred ccccceeEEee
Q psy14559 79 VFIDRALVVTP 89 (405)
Q Consensus 79 ~~~~~~~~vv~ 89 (405)
.+.++.+.+..
T Consensus 81 ~v~Gr~L~V~~ 91 (95)
T 1ufw_A 81 KVKGRAVKISG 91 (95)
T ss_dssp EETTEEEEEEC
T ss_pred eeCCeEEEEec
Confidence 66666666544
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00092 Score=53.70 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=61.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhc----C-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQK----V-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~----~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a 240 (405)
+++|.|.|||+++.++.|.-+|+. . |+|.++.... +-|+|+|.+.+.|++.|+...+.|.|.+|.|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 789999999999999999999996 2 5899887632 5799999999999999987779999999999875
Q ss_pred c
Q psy14559 241 T 241 (405)
Q Consensus 241 ~ 241 (405)
.
T Consensus 82 ~ 82 (104)
T 2dhx_A 82 P 82 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.001 Score=53.44 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=59.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccC-----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559 7 APVKTKVVQVANIAPQATRDQMQTLFGYL-----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI 81 (405)
Q Consensus 7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~-----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~ 81 (405)
+....++|.|.|||+.+.++.|.-+|+.- |+|.++...+ +-|+|.|.+.+.|+..|+...-.+.
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----------~~AvItF~d~~va~rVL~k~~H~L~ 72 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----------CGGVLTFREPADAERVLAQADHELH 72 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----------TEEEEEESSHHHHHHHHTCSCCBSS
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----------CcEEEEEcChHHHHHHhcCCcceec
Confidence 45567899999999999999999999872 7899998832 4599999999999999877555566
Q ss_pred cceeEEeecCC
Q psy14559 82 DRALVVTPYNS 92 (405)
Q Consensus 82 ~~~~~vv~~~~ 92 (405)
+-.+.+.++..
T Consensus 73 ~~~LsV~P~~~ 83 (104)
T 2dhx_A 73 GAQLSLRPAPP 83 (104)
T ss_dssp SSBCEEEECCC
T ss_pred CeEEEEEcCCC
Confidence 66666666443
No 384
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0021 Score=53.12 Aligned_cols=71 Identities=8% Similarity=0.120 Sum_probs=60.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCC-eeEEEeecc
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG-KTLQMFHST 241 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g-~~i~V~~a~ 241 (405)
.+.|.|-++|+.. -..+...|++||.|.+.... ....+-.|.|.+..+|++||..||..+.| -.|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 6789999999986 56778999999999988762 23569999999999999999999999985 677887753
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.0011 Score=53.39 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=60.3
Q ss_pred CcEEEEeCCCCCC-CH----HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559 166 RRTLVAINIEESV-SP----QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH 239 (405)
Q Consensus 166 ~rtvfV~NLp~~~-te----e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~ 239 (405)
..+|+|.||+.++ +. +.++++|..|+++....... +-+=.-|.|.++++|.+|.. |+|..+.|+.|+|-+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----cceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 5689999999866 32 57799999999888876532 23347899999999999987 999999999999999
Q ss_pred ccC
Q psy14559 240 STQ 242 (405)
Q Consensus 240 a~~ 242 (405)
++.
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 873
No 386
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0013 Score=53.32 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=59.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccC-----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYL-----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDR 83 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~-----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~ 83 (405)
..++|-+=|||.++++..|+.|.+.+ |.|..+.+.|.. +-|+|+|.+...|-+|. .+++..|-++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---------~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---------NGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---------TEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---------CceEEEEccchhhHHHHhhcCCeeecCe
Confidence 37999999999999999999999999 999999995532 34999999999987775 7777777777
Q ss_pred eeEEee
Q psy14559 84 ALVVTP 89 (405)
Q Consensus 84 ~~~vv~ 89 (405)
.+.|..
T Consensus 91 ~Lr~gT 96 (117)
T 2l9w_A 91 VIRSGT 96 (117)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 777654
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.80 E-value=0.0013 Score=55.19 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=57.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEec-------------c-CC-CCCcEEEEEECCHHHHHHHHHhCCce
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYI-RFCT-------------R-EN-DTNKYALVEFSDQACVIPALKLNGTN 229 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i-~i~~-------------~-~~-~~rg~afV~F~~~e~A~~Al~lng~~ 229 (405)
..-|.|-++|++.+.. +.+.|++||.|.+- ...+ . +. ....+-.|+|.+..+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4568888998877755 55889999998762 1111 0 11 13568899999999999999999999
Q ss_pred eCCeeEEEeecc
Q psy14559 230 LKGKTLQMFHST 241 (405)
Q Consensus 230 l~g~~i~V~~a~ 241 (405)
|.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999998998764
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.50 E-value=0.0093 Score=46.96 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=51.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCC-CccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSI-PVQSRICYVKFFDEKCVGISQ-HLTNTVFIDR 83 (405)
Q Consensus 12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~-~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~ 83 (405)
..|.|++||++.||+++.+..+...++.-....+-+. +. ...-.-|||.|.+.+++..-. ..++..|.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~--s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT--SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC--SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCcc--CCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999999877666644322 21 123346999999998876554 4566667664
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.45 E-value=0.0044 Score=49.24 Aligned_cols=57 Identities=18% Similarity=0.364 Sum_probs=46.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
+...+++++ +.|+.....||.++|+.||.| .|+++ .|. .|||.|.+++.|..|+.+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wi---dDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWI---DDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEE---ETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEE---cCC-------eEEEEecCHHHHHHHHHhc
Confidence 556788888 999999999999999999964 45552 122 4999999999999998753
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.33 E-value=0.017 Score=45.43 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=53.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe-cc-C-C-CCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TR-E-N-DTNKYALVEFSDQACVIPALK-LNGTNLKGK 233 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~-~~-~-~-~~rg~afV~F~~~e~A~~Al~-lng~~l~g~ 233 (405)
.+|.|.+||+++|++++.+.++..+.+...... .+ . + ..-.-|||.|.+.+++..-.+ ++|+.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 378999999999999999999999888777664 22 1 1 223569999999999888877 999887643
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.25 E-value=0.0053 Score=48.91 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=43.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
.+++++ ++|+...-.||.++|+.||. ..|+++ .|. .|||.|.+++.|..|+.+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wi---dDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWI---DDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEE---ETT-------EEEEEEEEECHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEE---cCC-------eEEEEecCHHHHHHHHHhc
Confidence 467788 99999999999999999994 455562 222 4999999999999998753
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.14 E-value=0.019 Score=47.41 Aligned_cols=75 Identities=9% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE-
Q psy14559 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV- 86 (405)
Q Consensus 8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~- 86 (405)
....+-|.|=+.|+.. -..+...|++||+|.+... + ...++-.|.|.+..+|++||..++..+-+..++
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~--------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIG 90 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-S--------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIG 90 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-C--------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-C--------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEE
Confidence 4456889999999885 5678889999999999876 2 236799999999999999999988777655554
Q ss_pred EeecCC
Q psy14559 87 VTPYNS 92 (405)
Q Consensus 87 vv~~~~ 92 (405)
|+++.+
T Consensus 91 V~p~~d 96 (119)
T 1wwh_A 91 VKPCID 96 (119)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 455544
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.76 E-value=0.0054 Score=62.30 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=47.7
Q ss_pred cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCC
Q psy14559 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG 232 (405)
Q Consensus 163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g 232 (405)
++..|+|||. .|..+++.+|.++|++||+|.++.+-.+.| -||.|+|.+.+++..++...+....+
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 3447899997 799999999999999999999998854433 69999999999999887654444333
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.61 E-value=0.032 Score=44.27 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=43.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q psy14559 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK 224 (405)
Q Consensus 167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~ 224 (405)
.-+++ ++|.+....||.++|+.||.| .|+.++|+ .|||.|.+++.|..|+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 44555 999999999999999999943 66666664 59999999999999988
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.31 E-value=0.023 Score=45.17 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=44.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC
Q psy14559 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN 226 (405)
Q Consensus 168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln 226 (405)
-||+-++|.+....||.++|+.|| -..|+.+.|+ .|||.|.+++.|..|+. ++
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 455559999999999999999999 3466666664 59999999999999998 53
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=60.09 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=43.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
.|+|+|. .|+.+++.+|.++|++||+|.++..+. + ..-||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~-~-------~g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE-S-------FGLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC-S-------SSEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc-c-------CCeEEEEEeCCHHHHHHHHhcc
Confidence 4899998 799999999999999999999999942 1 2479999999999999887554
No 397
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.91 E-value=0.06 Score=43.24 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=52.2
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccce
Q psy14559 11 TKVVQVANIAPQA-T----RDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRA 84 (405)
Q Consensus 11 ~~tLfVgNLp~~v-T----eedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~ 84 (405)
..+|+|.||+..+ + .+.++++|..|+++.....+++ -+-..|.|.+.++|..|- ++.+..+.+..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---------FKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---------TTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---------ceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 4689999999865 3 3567899999999999888543 223689999999999995 56667777765
Q ss_pred eEE
Q psy14559 85 LVV 87 (405)
Q Consensus 85 ~~v 87 (405)
+.+
T Consensus 76 ~r~ 78 (104)
T 1wey_A 76 MKL 78 (104)
T ss_dssp CEE
T ss_pred eEE
Confidence 544
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.23 E-value=0.049 Score=43.23 Aligned_cols=72 Identities=15% Similarity=0.334 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCC-ccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIP-VQSRICYVKFFDEKCVGISQ-HLTNTVFIDR 83 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~-~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~ 83 (405)
.+-.|.|+.|||++||+++.+.++..=++.-....+ .+.+.+ ..-.-|||.|.+.+++..-. ...+..|.|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~--G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFA--ADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCC--CCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeC--CccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 356799999999999999888777765543222211 122221 12245999999999876654 4555666664
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.22 E-value=0.072 Score=42.27 Aligned_cols=68 Identities=10% Similarity=0.220 Sum_probs=47.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe-cc-C-C-CCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TR-E-N-DTNKYALVEFSDQACVIPALK-LNGTNLKGK 233 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~-~~-~-~-~~rg~afV~F~~~e~A~~Al~-lng~~l~g~ 233 (405)
.-+|.|..||+++||+++.+.++.+-++...... .+ + + ..-.-|||.|.+.+++..-.+ .+|..|-+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3479999999999999987777665444333222 12 1 1 112459999999999988887 999877543
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.89 E-value=0.61 Score=38.96 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=50.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeeccC---------CCCCC--ccccEEEEEecchhhHHHHHhccCCcc
Q psy14559 13 VVQVANIAPQATRDQMQTLFGYLGKVED-LRLYPIAR---------DVSIP--VQSRICYVKFFDEKCVGISQHLTNTVF 80 (405)
Q Consensus 13 tLfVgNLp~~vTeedLr~lFs~~G~I~~-v~i~~~~~---------d~~~~--~~~g~aFV~F~~~e~A~~Al~~~n~~~ 80 (405)
-|.|=+.|+..+ ..+-+.|++||.|.+ +.. +... ....+ ...++-.|.|.+..+|..||..++..+
T Consensus 9 ~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~-~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETMA-NQVIAYFQEFGTILEDFEV-LRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp EEEEECCCGGGH-HHHHHHHGGGSCBCSCCGG-GCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred EEEEEecCHHHH-HHHHHHHHhhceEeeeccc-cccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 445556666554 456788999999877 211 1000 00001 146788999999999999999999988
Q ss_pred ccceeEEeecC
Q psy14559 81 IDRALVVTPYN 91 (405)
Q Consensus 81 ~~~~~~vv~~~ 91 (405)
-+.-+-|+++.
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 77644566653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.16 E-value=3.6 Score=42.06 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT 76 (405)
Q Consensus 10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~ 76 (405)
...+++|+ +|+.++..+|.++|+.||.+ +|+++ . ...|||.|.+.++|..+++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi---d-------dt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI---D-------DTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC---S-------SSEEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE---c-------CCeEEEEECCHHHHHHHHHHH
Confidence 45688888 99999999999999999964 55551 1 234999999999999888654
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.80 E-value=10 Score=38.75 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=43.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC
Q psy14559 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN 226 (405)
Q Consensus 166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln 226 (405)
...++|+ +|......+|.+.|+.||.+ +|+.+.+ ..|||.|.+.+.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 3456665 99999999999999999954 5655443 369999999999999988 64
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.56 E-value=70 Score=27.66 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=38.8
Q ss_pred EEEEeCCCC---------CCCHHHHHHHH--hcCCCeeEEEEeccCCCCCcEEEEEEC-CHHHHHHHHH
Q psy14559 168 TLVAINIEE---------SVSPQELVDFF--QKVGTVNYIRFCTRENDTNKYALVEFS-DQACVIPALK 224 (405)
Q Consensus 168 tvfV~NLp~---------~~tee~L~~~F--~~~G~I~~i~i~~~~~~~rg~afV~F~-~~e~A~~Al~ 224 (405)
++.|-|+|. ..+..+|++.| +.|.++.-..+....| .+|+|.|.|. +...-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 455666665 25568999988 8999877555544433 6899999998 4455566654
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.91 E-value=87 Score=27.06 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=41.0
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--ccCCceEEEEEeeccCCCCCCccccEEEEEecchhh-HHHHHhc
Q psy14559 13 VVQVANIAP-Q--------ATRDQMQTLF--GYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKC-VGISQHL 75 (405)
Q Consensus 13 tLfVgNLp~-~--------vTeedLr~lF--s~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~-A~~Al~~ 75 (405)
++.|-|+|. . .+..+|++.| +.|.++.-..++.. ..++|+|.|.|.+.-+ -..|+.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~------~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY------LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS------SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC------CCCceeEEEEecCChHHHHHHHHH
Confidence 466788886 2 4457899977 99999887666432 2478999999999775 4455543
Done!