Your job contains 1 sequence.
>psy14559
MAVDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICY
VKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPA
HVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSP
QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS
TQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVI
VLIVVDVALDLALEIGDDLEVVVRDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDH
ASVHLDVMMIRNVIVRREVYENVPEVKTRASPPLALPRPSLNQEV
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14559
(405 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0024285 - symbol:Srp54 "Srp54" species:7227 "Droso... 790 1.4e-78 1
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 519 7.4e-50 1
WB|WBGene00004704 - symbol:rsp-7 species:6239 "Caenorhabd... 490 8.8e-47 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 484 3.8e-46 1
UNIPROTKB|Q5T760 - symbol:SRSF11 "Serine/arginine-rich-sp... 315 3.5e-38 2
UNIPROTKB|Q148M1 - symbol:SFRS11 "Uncharacterized protein... 315 9.5e-38 2
UNIPROTKB|Q19QT0 - symbol:SFRS11 "Uncharacterized protein... 315 9.9e-38 2
UNIPROTKB|Q05519 - symbol:SRSF11 "Serine/arginine-rich sp... 315 1.0e-37 2
RGD|1559953 - symbol:Srsf11 "serine/arginine-rich splicin... 310 2.5e-37 2
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 399 3.9e-37 1
ZFIN|ZDB-GENE-030131-605 - symbol:srsf11 "serine/arginine... 299 2.5e-35 2
UNIPROTKB|F1NWC7 - symbol:SRSF11 "Uncharacterized protein... 275 5.5e-34 2
UNIPROTKB|F1MAM3 - symbol:Sfrs11 "Protein Sfrs11" species... 310 3.9e-31 2
UNIPROTKB|F1NWC6 - symbol:SRSF11 "Uncharacterized protein... 262 1.2e-29 2
UNIPROTKB|J9P803 - symbol:SREK1 "Uncharacterized protein"... 278 4.2e-24 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 273 1.6e-22 1
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 273 1.6e-22 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 273 1.6e-22 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 273 1.8e-22 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 273 1.8e-22 1
UNIPROTKB|B4DTC1 - symbol:SRSF11 "cDNA FLJ58939, highly s... 257 4.3e-22 1
UNIPROTKB|B4DWT1 - symbol:SRSF11 "Serine/arginine-rich-sp... 257 4.3e-22 1
UNIPROTKB|D4A4E2 - symbol:Sfrs11 "Protein Sfrs11" species... 257 4.3e-22 1
UNIPROTKB|E5RFV3 - symbol:SREK1 "Splicing regulatory glut... 234 2.1e-19 1
UNIPROTKB|E1BDN8 - symbol:E1BDN8 "Uncharacterized protein... 143 2.3e-06 2
UNIPROTKB|Q5T757 - symbol:SRSF11 "Serine/arginine-rich-sp... 110 1.0e-05 2
UNIPROTKB|G4MTV6 - symbol:MGG_01579 "Pre-mRNA branch site... 100 0.00013 1
WB|WBGene00021921 - symbol:Y55F3AM.3 species:6239 "Caenor... 120 0.00038 1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 92 0.00099 1
>FB|FBgn0024285 [details] [associations]
symbol:Srp54 "Srp54" species:7227 "Drosophila melanogaster"
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 SMART:SM00360 GO:GO:0022008 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GO:GO:0000381 GO:GO:0008187 eggNOG:NOG277302 EMBL:AF055719
ProteinModelPortal:O61646 SMR:O61646 STRING:O61646 PaxDb:O61646
FlyBase:FBgn0024285 InParanoid:O61646 OrthoDB:EOG4JH9XJ Bgee:O61646
Uniprot:O61646
Length = 513
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 159/282 (56%), Positives = 205/282 (72%)
Query: 12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGI 71
+V+QV NIAPQAT+DQMQTLFG +GK+E++RLYP RDVS PVQSRICYVK+ D V +
Sbjct: 8 RVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKYTDTTSVPV 67
Query: 72 SQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIEG 128
+QHLTNTVFIDRAL+V P + IP+E RALE+ G + KLP V N+IEG
Sbjct: 68 AQHLTNTVFIDRALIVIPVLA--IPEEYRALEMLKNGTIVPGLQKPDSKLPPEVINRIEG 125
Query: 129 VPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ 188
P QVI T+DP LV+ LP+YP LP YD +KIEEIRRT++ +++ +L++ FQ
Sbjct: 126 QLPQQVIKTYDPKLVEFNLPEYPALPSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQ 185
Query: 189 KVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPE 248
+ G V Y R+ ++N T Y ++EF +Q +I AL++ G KG L ++HST SI KPE
Sbjct: 186 RAGEVKYARWAEKDNKT--YCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKPE 243
Query: 249 AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKK 290
AKSNEAAQ EIEEAM+ VKEAQ+MISAAIDPVIG+L+KDK++
Sbjct: 244 AKSNEAAQAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRR 285
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 120/294 (40%), Positives = 175/294 (59%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T V+QV N++ T +QM+TLF +LG++E+LRLYP + + S++CYVKF D VG
Sbjct: 18 TAVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYP-PDNAPLAFSSKVCYVKFRDPSSVG 76
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNS---GEPKLPAHVTNQIE 127
++QHLTNTVFIDRAL+V P G+IP+E +AL + A S G LP N +
Sbjct: 77 VAQHLTNTVFIDRALIVVPCAEGKIPEESKALSLLAPAPTMTSLMPGAGLLPIPTPNPLT 136
Query: 128 --GVPPNQV----ISTHDPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVS 179
GV + + + DP + G +PQ PPL D KI+EIRRT+ N+ ++ +
Sbjct: 137 TLGVSLSSLGAIPAAALDPNIATLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTT 195
Query: 180 PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFH 239
+L++FF++VG V ++R E ++A VEF+DQ V AL NG + L++ H
Sbjct: 196 ADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINH 255
Query: 240 STQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
S +I KP + +AA +E+EE M RV+EAQ+ ISAAI+P G S ++K S
Sbjct: 256 SNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESG-KSNERKGGRS 308
>WB|WBGene00004704 [details] [associations]
symbol:rsp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040017
"positive regulation of locomotion" evidence=IMP] [GO:0019915
"lipid storage" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0002119 GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0040017 GO:GO:0003723 GO:GO:0019915
GO:GO:0000398 EMBL:Z36948 GeneTree:ENSGT00700000104035 EMBL:Z49911
PIR:T20382 RefSeq:NP_741039.1 RefSeq:NP_741040.1
ProteinModelPortal:O01159 SMR:O01159 STRING:O01159 PaxDb:O01159
PRIDE:O01159 EnsemblMetazoa:D2089.1a GeneID:174646
KEGG:cel:CELE_D2089.1 UCSC:D2089.1b.1 CTD:174646 WormBase:D2089.1a
WormBase:D2089.1b eggNOG:NOG277302 InParanoid:O01159 KO:K13165
OMA:CAYAYVE NextBio:884894 Uniprot:O01159
Length = 452
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 108/257 (42%), Positives = 156/257 (60%)
Query: 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCV 69
K K++ VANI+ ATRD + +F YLGK++DL++YP +++ + ++KF DE+CV
Sbjct: 8 KVKILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCV 67
Query: 70 GISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQI-EG 128
++QHLTNTV ID A+V PY + IPDE+ +G+ +LP HVTN+I E
Sbjct: 68 EVAQHLTNTVVIDCAIVCLPYPNPVIPDEESFFNSGGST---TAGQRQLPPHVTNKIQES 124
Query: 129 VPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ 188
+ ++ T DP L Q GLP YPPLP D+ K+EEIRRT+ N+ + V E+++ F
Sbjct: 125 DDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFN 184
Query: 189 KV-GTVNYIRFCTRENDTN-KYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
G V Y R + + YA VEFS QA V AL+ +G K + L++ HS +I K
Sbjct: 185 MYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIK 244
Query: 247 PEAKSNEAAQREIEEAM 263
P+AK++E A EIEEA+
Sbjct: 245 PQAKTDEQALGEIEEAI 261
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 110/293 (37%), Positives = 172/293 (58%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T V+Q+ N++ + DQM+TLFG+LG +++LRLYP + + S++CY+K+ + VG
Sbjct: 7 TNVIQITNLSAAVSSDQMRTLFGFLGDIDELRLYP-PDNAPLSFSSKVCYIKYREPSSVG 65
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNS-----GEPKLPAHVTNQ 125
++QHLTNTVFIDRAL+V P G+IP+E +AL + A S G +P+ T Q
Sbjct: 66 VAQHLTNTVFIDRALIVVPCAEGKIPEEAKALSLLAPATPVASLMSGGGLLPIPSPSTLQ 125
Query: 126 IEGVP-PNQVI--STHDP-VLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSP 180
+P N + S+ D V + PPL D K++EIRRT+ N+ +S +
Sbjct: 126 NRSLPLANLGVLKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTA 185
Query: 181 QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240
+L+ FF++VG V ++R E ++A VEF+DQ V AL NG + L++ HS
Sbjct: 186 DQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHS 245
Query: 241 TQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
+I KP + +AA +E+E+ M +V+EAQ+ I+AAI+P + S + + HS
Sbjct: 246 NNAIVKPPELTPQAAAKELEDVMKKVREAQSTIAAAIEPENELPSSSRSR-HS 297
>UNIPROTKB|Q5T760 [details] [associations]
symbol:SRSF11 "Serine/arginine-rich-splicing factor 11"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL353771 UniGene:Hs.479693
HGNC:HGNC:10782 HOVERGEN:HBG058422 IPI:IPI00641957 SMR:Q5T760
STRING:Q5T760 Ensembl:ENST00000395136 UCSC:uc001deu.2
Uniprot:Q5T760
Length = 389
Score = 315 (115.9 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 68/144 (47%), Positives = 91/144 (63%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
++QHLTNTVF+DRAL+V PY G IPDE +AL + A P G P +T Q
Sbjct: 91 VAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 149
Query: 126 IEGVPPNQV-ISTHDPVLVQHGLP 148
I VP + T DP L GLP
Sbjct: 150 IGAVPLAALGAPTLDPALAALGLP 173
Score = 110 (43.8 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 239 HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
H + P KS + + +EIEEAM RV+EAQ++ISAAI+P K++K+ HS R
Sbjct: 200 HVAAGLVSPSLKS-DTSSKEIEEAMKRVREAQSLISAAIEPD----KKEEKRRHSRSR 252
>UNIPROTKB|Q148M1 [details] [associations]
symbol:SFRS11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:DAAA02008400 CTD:9295 HOGENOM:HOG000121772 HOVERGEN:HBG058422
KO:K12899 OMA:FLKLMQS EMBL:DAAA02008398 EMBL:DAAA02008399
EMBL:BC118154 IPI:IPI00690098 RefSeq:NP_001069089.1
UniGene:Bt.48320 STRING:Q148M1 Ensembl:ENSBTAT00000020564
GeneID:513451 KEGG:bta:513451 InParanoid:Q148M1 NextBio:20870858
Uniprot:Q148M1
Length = 482
Score = 315 (115.9 bits), Expect = 9.5e-38, Sum P(2) = 9.5e-38
Identities = 68/144 (47%), Positives = 91/144 (63%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 31 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 89
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
++QHLTNTVF+DRAL+V PY G IPDE +AL + A P G P +T Q
Sbjct: 90 VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 148
Query: 126 IEGVPPNQV-ISTHDPVLVQHGLP 148
I VP + T DP L GLP
Sbjct: 149 IGAVPLAALGAPTLDPALAALGLP 172
Score = 110 (43.8 bits), Expect = 9.5e-38, Sum P(2) = 9.5e-38
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 239 HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
H + P KS + + +EIEEAM RV+EAQ++ISAAI+P K++K+ HS R
Sbjct: 199 HVAAGLVSPSLKS-DTSSKEIEEAMKRVREAQSLISAAIEPD----KKEEKRRHSRSR 251
>UNIPROTKB|Q19QT0 [details] [associations]
symbol:SFRS11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 CTD:9295 HOGENOM:HOG000121772 HOVERGEN:HBG058422
KO:K12899 OrthoDB:EOG4J9N10 OMA:FLKLMQS EMBL:CU694928 EMBL:DQ499456
RefSeq:NP_001038052.1 UniGene:Ssc.54073 Ensembl:ENSSSCT00000004195
GeneID:733656 KEGG:ssc:733656 Uniprot:Q19QT0
Length = 483
Score = 315 (115.9 bits), Expect = 9.9e-38, Sum P(2) = 9.9e-38
Identities = 68/144 (47%), Positives = 91/144 (63%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 31 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 89
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
++QHLTNTVF+DRAL+V PY G IPDE +AL + A P G P +T Q
Sbjct: 90 VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 148
Query: 126 IEGVPPNQV-ISTHDPVLVQHGLP 148
I VP + T DP L GLP
Sbjct: 149 IGAVPLAALGAPTLDPALAALGLP 172
Score = 110 (43.8 bits), Expect = 9.9e-38, Sum P(2) = 9.9e-38
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 239 HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
H + P KS + + +EIEEAM RV+EAQ++ISAAI+P K++K+ HS R
Sbjct: 199 HVAAGLVSPSLKS-DTSSKEIEEAMKRVREAQSLISAAIEPD----KKEEKRRHSRSR 251
>UNIPROTKB|Q05519 [details] [associations]
symbol:SRSF11 "Serine/arginine-rich splicing factor 11"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:CH471059 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 EMBL:AL353771
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 eggNOG:NOG277302 EMBL:M74002 EMBL:BC040436
IPI:IPI00464952 IPI:IPI00641287 PIR:A40988 RefSeq:NP_001177916.1
RefSeq:NP_004759.1 UniGene:Hs.479693 ProteinModelPortal:Q05519
SMR:Q05519 IntAct:Q05519 STRING:Q05519 PhosphoSite:Q05519
DMDM:8134672 PaxDb:Q05519 PRIDE:Q05519 Ensembl:ENST00000370950
Ensembl:ENST00000370951 Ensembl:ENST00000405432 GeneID:9295
KEGG:hsa:9295 UCSC:uc001des.3 CTD:9295 GeneCards:GC01P070672
HGNC:HGNC:10782 HPA:HPA008762 MIM:602010 neXtProt:NX_Q05519
PharmGKB:PA35698 HOGENOM:HOG000121772 HOVERGEN:HBG058422
InParanoid:Q05519 KO:K12899 OrthoDB:EOG4J9N10 PhylomeDB:Q05519
ChiTaRS:SRSF11 GenomeRNAi:9295 NextBio:34827 ArrayExpress:Q05519
Bgee:Q05519 CleanEx:HS_SFRS11 Genevestigator:Q05519
GermOnline:ENSG00000116754 Uniprot:Q05519
Length = 484
Score = 315 (115.9 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 68/144 (47%), Positives = 91/144 (63%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
++QHLTNTVF+DRAL+V PY G IPDE +AL + A P G P +T Q
Sbjct: 91 VAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 149
Query: 126 IEGVPPNQV-ISTHDPVLVQHGLP 148
I VP + T DP L GLP
Sbjct: 150 IGAVPLAALGAPTLDPALAALGLP 173
Score = 110 (43.8 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 239 HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
H + P KS + + +EIEEAM RV+EAQ++ISAAI+P K++K+ HS R
Sbjct: 200 HVAAGLVSPSLKS-DTSSKEIEEAMKRVREAQSLISAAIEPD----KKEEKRRHSRSR 252
>RGD|1559953 [details] [associations]
symbol:Srsf11 "serine/arginine-rich splicing factor 11"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1559953 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473952 CTD:9295 HOGENOM:HOG000121772
HOVERGEN:HBG058422 KO:K12899 OrthoDB:EOG4J9N10 IPI:IPI00949618
EMBL:BC099157 RefSeq:NP_001030332.1 UniGene:Rn.11095 STRING:Q4KLK1
GeneID:502603 KEGG:rno:502603 eggNOG:NOG243664 InParanoid:Q4KLK1
NextBio:711976 Genevestigator:Q4KLK1 Uniprot:Q4KLK1
Length = 476
Score = 310 (114.2 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 67/144 (46%), Positives = 90/144 (62%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 25 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 83
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
++QHLTNTVF+DRAL+V PY G IPDE +AL + A P G P +T Q
Sbjct: 84 VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 142
Query: 126 IEGVPPNQV-ISTHDPVLVQHGLP 148
I VP + DP L GLP
Sbjct: 143 IGAVPLAALGAPALDPALAALGLP 166
Score = 111 (44.1 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 220 IPALKLNGTNLKGKTL---QMF-----------HSTQSIQKPEAKSNEAAQREIEEAMSR 265
+ AL L GTNL ++L Q+ H + P KS + + +EIEEAM R
Sbjct: 160 LAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKS-DTSSKEIEEAMKR 218
Query: 266 VKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
V+EAQ++ISAAI+P K++K+ HS R
Sbjct: 219 VREAQSLISAAIEPD----KKEEKRRHSRSR 245
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 93/242 (38%), Positives = 138/242 (57%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T V+QV N++ T +QM+TLFG+LG +E+LRLYP + + S++CY+KF + VG
Sbjct: 4 TSVIQVTNLSLAVTSEQMRTLFGFLGDIEELRLYP-PDNAPLAFSSKVCYIKFREASSVG 62
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
++QHLTNTVFIDRAL+V P G+IPDE +AL + A P +G +P
Sbjct: 63 VAQHLTNTVFIDRALIVVPCAEGKIPDEAKALSLLAPAPTMTSLMPGAGLLPIPTPTPLT 122
Query: 126 IEGVPPNQV----ISTHDPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVS 179
GV + + DP + G +PQ PP+ D KI+EIRRT+ N+ ++ +
Sbjct: 123 TLGVSLGTLGAIPAAALDPNITALGEIPQ-PPIMGNVDPSKIDEIRRTVYVGNLNSQTTT 181
Query: 180 PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMF- 238
+L++FF++VG V ++R E ++A VEF+DQ V AL NG + L+
Sbjct: 182 ADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKFVN 241
Query: 239 HS 240
HS
Sbjct: 242 HS 243
>ZFIN|ZDB-GENE-030131-605 [details] [associations]
symbol:srsf11 "serine/arginine-rich splicing factor
11" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 SMART:SM00360
ZFIN:ZDB-GENE-030131-605 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG277302 CTD:9295 HOGENOM:HOG000121772
KO:K12899 OrthoDB:EOG4J9N10 EMBL:BC044186 IPI:IPI00491204
RefSeq:NP_955870.1 UniGene:Dr.20792 STRING:Q803U8 PRIDE:Q803U8
GeneID:321886 KEGG:dre:321886 InParanoid:Q803U8 NextBio:20807571
ArrayExpress:Q803U8 Bgee:Q803U8 Uniprot:Q803U8
Length = 461
Score = 299 (110.3 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 59/125 (47%), Positives = 84/125 (67%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T V+QV N++P +T +QM+TLFG++G +++LRL+P D +PV SR+C+VKF + + VG
Sbjct: 6 TSVIQVTNVSPSSTAEQMRTLFGFIGSIDELRLFP-PDDSPLPVTSRVCFVKFHEPESVG 64
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
+SQHLTNTVF+DRAL+V P+ G IPDE +A+ + A P G P V +
Sbjct: 65 VSQHLTNTVFVDRALIVVPFAEGVIPDESKAMSLLAPANAVAGLLPGGGLLPTPNPVPS- 123
Query: 126 IEGVP 130
I GVP
Sbjct: 124 IGGVP 128
Score = 103 (41.3 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKK 290
P K+ +A+ +EIEEAM RV+EAQ++ISAAI+P G DK+K
Sbjct: 182 PGLKA-DASNKEIEEAMKRVREAQSLISAAIEP--GSKKDDKRK 222
>UNIPROTKB|F1NWC7 [details] [associations]
symbol:SRSF11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104035 EMBL:AADN02012412
EMBL:AADN02012413 IPI:IPI00822721 Ensembl:ENSGALT00000018443
ArrayExpress:F1NWC7 Uniprot:F1NWC7
Length = 391
Score = 275 (101.9 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 67/148 (45%), Positives = 89/148 (60%)
Query: 6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD 65
V P + + VQV + +P A+ +QM+TLF LGK+E+LRL+P D +PV SR+C+VKF D
Sbjct: 21 VLP-EAQSVQVFSFSPSASSEQMRTLF-ILGKIEELRLFP-PDDSPLPVSSRVCFVKFHD 77
Query: 66 EKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPA-H 121
++QHLTNTVF+DRAL+V PY G IPDE +AL + A G G LP +
Sbjct: 78 PDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPN 137
Query: 122 VTNQIEGVPPNQV-ISTHDPVLVQHGLP 148
+QI VP + DP L GLP
Sbjct: 138 PLSQIGAVPLAALGAPALDPALAALGLP 165
Score = 114 (45.2 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 239 HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
H + P KS + + +EIEEAM RV+EAQ++ISAAI+P KD+K+ HS R
Sbjct: 192 HVAAGLVSPSLKS-DTSSKEIEEAMKRVREAQSLISAAIEPD----KKDEKRRHSRSR 244
>UNIPROTKB|F1MAM3 [details] [associations]
symbol:Sfrs11 "Protein Sfrs11" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949618 Ensembl:ENSRNOT00000064725 ArrayExpress:F1MAM3
Uniprot:F1MAM3
Length = 511
Score = 310 (114.2 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 67/144 (46%), Positives = 90/144 (62%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 60 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 118
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
++QHLTNTVF+DRAL+V PY G IPDE +AL + A P G P +T Q
Sbjct: 119 VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 177
Query: 126 IEGVPPNQV-ISTHDPVLVQHGLP 148
I VP + DP L GLP
Sbjct: 178 IGAVPLAALGAPALDPALAALGLP 201
Score = 56 (24.8 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 220 IPALKLNGTNLKGKTL---QMF-----------HSTQSIQKPEAKSNEAAQREIEEAMSR 265
+ AL L GTNL ++L Q+ H ++ P K +++ ++I E + R
Sbjct: 195 LAALGLPGTNLNSQSLAADQLLKLMSTVDPNLKHLKAALVSPRLKISKS-YKQILEHVKR 253
Query: 266 VKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
+A +++ A DP K++K+ HS R
Sbjct: 254 AMKANTLVTCASDPD----KKEEKRRHSRSR 280
>UNIPROTKB|F1NWC6 [details] [associations]
symbol:SRSF11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00700000104035 OMA:FLKLMQS EMBL:AADN02012412
EMBL:AADN02012413 IPI:IPI00581815 Ensembl:ENSGALT00000018445
ArrayExpress:F1NWC6 Uniprot:F1NWC6
Length = 443
Score = 262 (97.3 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 62/134 (46%), Positives = 81/134 (60%)
Query: 20 APQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV 79
+P A+ +QM+TLF LGK+E+LRL+P D +PV SR+C+VKF D ++QHLTNTV
Sbjct: 2 SPSASSEQMRTLF-ILGKIEELRLFP-PDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTV 59
Query: 80 FIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPA-HVTNQIEGVPPNQV- 134
F+DRAL+V PY G IPDE +AL + A G G LP + +QI VP +
Sbjct: 60 FVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLSQIGAVPLAALG 119
Query: 135 ISTHDPVLVQHGLP 148
DP L GLP
Sbjct: 120 APALDPALAALGLP 133
Score = 114 (45.2 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 239 HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
H + P KS + + +EIEEAM RV+EAQ++ISAAI+P KD+K+ HS R
Sbjct: 160 HVAAGLVSPSLKS-DTSSKEIEEAMKRVREAQSLISAAIEPD----KKDEKRRHSRSR 212
>UNIPROTKB|J9P803 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 EMBL:AAEX03001478
Ensembl:ENSCAFT00000049340 Uniprot:J9P803
Length = 432
Score = 278 (102.9 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 90/295 (30%), Positives = 144/295 (48%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T V+QV N++ T +QM+TLF +LG++E+LRLYP + + S++CYVKF D VG
Sbjct: 32 TAVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYP-PDNAPLAFSSKVCYVKFRDPSSVG 90
Query: 71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVP 130
++QHLTNTVFIDRAL+V P G+IP+E +AL + A S P + +P
Sbjct: 91 VAQHLTNTVFIDRALIVVPCAEGKIPEESKALSLLAPAPTMTSLMPGAG------LLPIP 144
Query: 131 PNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKV 190
++T L G P + + + EI + + N + + +L++FF++V
Sbjct: 145 TPNPLTTLGVSLSSLGA--IPAAALDPNIATLGEIPQPPLMGN---TTTADQLLEFFKQV 199
Query: 191 GTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAK 250
G V N +N A+V+ + A +L + + Q F S +I+ K
Sbjct: 200 GEVKI-------NHSNN-AIVKPPEMTPQAAAKELEEVMKRVREAQSFISA-AIEPESGK 250
Query: 251 SNE-----------AAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSP 294
SNE + R ++ SR K +Q+ + KD+++S SP
Sbjct: 251 SNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSP 305
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 273 (101.2 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 63/157 (40%), Positives = 94/157 (59%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 41 DPNITTLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 99
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 100 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
+E+EE M RV+EAQ+ ISAAI+P G S ++K S
Sbjct: 160 KELEEVMKRVREAQSFISAAIEPESG-KSNERKGGRS 195
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 273 (101.2 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 63/157 (40%), Positives = 94/157 (59%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 41 DPNITALGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 99
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 100 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
+E+EE M RV+EAQ+ ISAAI+P G S ++K S
Sbjct: 160 KELEEVMKRVREAQSFISAAIEPESG-KSNERKGGRS 195
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 273 (101.2 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 63/157 (40%), Positives = 94/157 (59%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 41 DPNITALGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 99
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 100 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
+E+EE M RV+EAQ+ ISAAI+P G S ++K S
Sbjct: 160 KELEEVMKRVREAQSFISAAIEPESG-KSNERKGGRS 195
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 273 (101.2 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 63/157 (40%), Positives = 94/157 (59%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 38 DPNIATLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 96
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 97 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 156
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
+E+EE M RV+EAQ+ ISAAI+P G S ++K S
Sbjct: 157 KELEEVMKRVREAQSFISAAIEPESG-KSNERKGGRS 192
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 273 (101.2 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 63/157 (40%), Positives = 94/157 (59%)
Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSPQELVDFFQKVGTVNYI 196
DP + G +PQ PPL D KI+EIRRT+ N+ ++ + +L++FF++VG V ++
Sbjct: 38 DPNIATLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 96
Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
R E ++A VEF+DQ V AL NG + L++ HS +I KP + +AA
Sbjct: 97 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 156
Query: 257 REIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
+E+EE M RV+EAQ+ ISAAI+P G S ++K S
Sbjct: 157 KELEEVMKRVREAQSFISAAIEPESG-KSNERKGGRS 192
>UNIPROTKB|B4DTC1 [details] [associations]
symbol:SRSF11 "cDNA FLJ58939, highly similar to Splicing
factor arginine/serine-rich 11" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL353771 UniGene:Hs.479693
HGNC:HGNC:10782 ChiTaRS:SRSF11 EMBL:AK300147 IPI:IPI00910208
SMR:B4DTC1 STRING:B4DTC1 Ensembl:ENST00000454435 UCSC:uc010oqo.1
HOGENOM:HOG000070091 HOVERGEN:HBG103617 Uniprot:B4DTC1
Length = 131
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 45/80 (56%), Positives = 64/80 (80%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90
Query: 71 ISQHLTNTVFIDRALVVTPY 90
++QHLTNTVF+DRAL+V PY
Sbjct: 91 VAQHLTNTVFVDRALIVVPY 110
>UNIPROTKB|B4DWT1 [details] [associations]
symbol:SRSF11 "Serine/arginine-rich-splicing factor 11"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL353771 UniGene:Hs.479693 HGNC:HGNC:10782 ChiTaRS:SRSF11
HOGENOM:HOG000070091 HOVERGEN:HBG103617 EMBL:AK301670
IPI:IPI00908907 SMR:B4DWT1 STRING:B4DWT1 Ensembl:ENST00000436161
UCSC:uc009wbi.3 Uniprot:B4DWT1
Length = 128
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 45/80 (56%), Positives = 64/80 (80%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90
Query: 71 ISQHLTNTVFIDRALVVTPY 90
++QHLTNTVF+DRAL+V PY
Sbjct: 91 VAQHLTNTVFVDRALIVVPY 110
>UNIPROTKB|D4A4E2 [details] [associations]
symbol:Sfrs11 "Protein Sfrs11" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00557063
ProteinModelPortal:D4A4E2 Ensembl:ENSRNOT00000051847
ArrayExpress:D4A4E2 Uniprot:D4A4E2
Length = 155
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 45/80 (56%), Positives = 64/80 (80%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P D +PV SR+C+VKF D
Sbjct: 60 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 118
Query: 71 ISQHLTNTVFIDRALVVTPY 90
++QHLTNTVF+DRAL+V PY
Sbjct: 119 VAQHLTNTVFVDRALIVVPY 138
>UNIPROTKB|E5RFV3 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC025442 HGNC:HGNC:17882 ChiTaRS:SREK1
EMBL:AC008772 IPI:IPI00974421 ProteinModelPortal:E5RFV3 SMR:E5RFV3
Ensembl:ENST00000522912 UCSC:uc003jum.3 ArrayExpress:E5RFV3
Bgee:E5RFV3 Uniprot:E5RFV3
Length = 132
Score = 234 (87.4 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 43/79 (54%), Positives = 59/79 (74%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
T V+QV N++ T +QM+TLF +LG++E+LRLYP + + S++CYVKF D VG
Sbjct: 18 TSVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYP-PDNAPLAFSSKVCYVKFRDPSSVG 76
Query: 71 ISQHLTNTVFIDRALVVTP 89
++QHLTNTVFIDRAL+V P
Sbjct: 77 VAQHLTNTVFIDRALIVVP 95
>UNIPROTKB|E1BDN8 [details] [associations]
symbol:E1BDN8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] GO:GO:0005739 GO:GO:0005634
GeneTree:ENSGT00700000104035 EMBL:DAAA02050131 EMBL:DAAA02050132
EMBL:DAAA02050133 IPI:IPI00700301 Ensembl:ENSBTAT00000009630
Uniprot:E1BDN8
Length = 519
Score = 143 (55.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 58/224 (25%), Positives = 95/224 (42%)
Query: 11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD-EKCV 69
T V+QV N++ T +QM+TLF +LG++E+LRLYP ++ YV F E V
Sbjct: 18 TAVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYP-PEPATVSFSLSAPYVPFSQPESKV 76
Query: 70 GISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGV 129
+ ++T F+ + L+ P N G + + PN G P + + + G
Sbjct: 77 TVVFNVTRMYFLIKILIQLPANGGVCAPS--LFVVRPEMTQPNMGSMTFPG-IPSPL-GK 132
Query: 130 PPNQVISTHDPVL--VQHGLP--QYPPLPITYDTKKIEEIRRTLVAINIEE----SVSPQ 181
+ S H +L Q L + P K+ +I +T IN + + +
Sbjct: 133 LFLSLSSLHLTILQIFQMNLVLLNWEIQPALLGKIKVSKISKTNNLINGRQKKTKATACN 192
Query: 182 ELVDFFQ-KVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK 224
+L +FF+ K+ Y R + N F A IP+ K
Sbjct: 193 QLQEFFKPKIQAKKYTRLVAWQTMPNS-GFFHFFHNAVSIPSRK 235
Score = 38 (18.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 245 QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
+ P K +++ +R + SR ++ + I + KD++K R
Sbjct: 350 KSPHKKRSKSRERRKSRSRSRSRDKRKDTREKIKEKERVKEKDREKEREKER 401
>UNIPROTKB|Q5T757 [details] [associations]
symbol:SRSF11 "Serine/arginine-rich-splicing factor 11"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634 EMBL:AL353771
UniGene:Hs.479693 HGNC:HGNC:10782 HOGENOM:HOG000121772
HOVERGEN:HBG058422 IPI:IPI00641842 STRING:Q5T757
Ensembl:ENST00000370949 UCSC:uc001dew.3 OMA:FLKLMQS Uniprot:Q5T757
Length = 424
Score = 110 (43.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 239 HSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVR 296
H + P KS + + +EIEEAM RV+EAQ++ISAAI+P K++K+ HS R
Sbjct: 140 HVAAGLVSPSLKS-DTSSKEIEEAMKRVREAQSLISAAIEPD----KKEEKRRHSRSR 192
Score = 65 (27.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 90 YNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQIEGVPPNQV-ISTHDPVLV 143
+++G IPDE +AL + A P G P +T QI VP + T DP L
Sbjct: 50 FSAGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLT-QIGAVPLAALGAPTLDPALA 108
Query: 144 QHGLP 148
GLP
Sbjct: 109 ALGLP 113
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 30/101 (29%), Positives = 49/101 (48%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACV 219
K E+ R L N+ +V+P+EL D F K G + +R N T A V + D
Sbjct: 6 KLAPEVNRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASN-TKGTAFVVYEDVMDA 64
Query: 220 IPAL-KLNGTNLKGKTLQ-MFHSTQSIQKPEAKSNEAAQRE 258
A KLNG N + + L ++H + + + +K + A++E
Sbjct: 65 KQACDKLNGFNFQNRYLVVLYHQPEKMAR--SKEDLEARKE 103
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 46/172 (26%), Positives = 74/172 (43%)
Query: 97 DEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPIT 156
D +R+ ++ P P + +++ G P + + +P +H P+ L +T
Sbjct: 108 DRRRSPPRRRDRRTPPRRSPGRRSPPRSRLPG-PERRDVMPFNP---RHSPPKNAKLELT 163
Query: 157 YDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT--RENDTNKYALVEFS 214
+ E +RTL+ + I P++L +FF VG V +R T R + VEF
Sbjct: 164 AE----ERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFW 219
Query: 215 DQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRV 266
D+ V L LNG L G LQ IQ+ A+ N AA + + V
Sbjct: 220 DEESVPLGLALNGQRLMGAPLQ-------IQRTCAERNRAANSSVASTLGFV 264
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 92 (37.4 bits), Expect = 0.00099, P = 0.00099
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFC-TRENDTNK-YALVEFSDQACVIPALK-LNGTN 229
NI + ++L D F +VG V R RE K Y E+ DQ + A++ LNG
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 230 LKGKTLQMFHSTQSIQKPEAKS 251
G+ L++ ++ K E K+
Sbjct: 63 FSGRALRVDNAASEKNKEELKT 84
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 405 376 0.00088 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 588 (63 KB)
Total size of DFA: 216 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 33.89u 0.08s 33.97t Elapsed: 00:00:21
Total cpu time: 33.89u 0.08s 33.97t Elapsed: 00:00:22
Start: Thu Aug 15 14:44:21 2013 End: Thu Aug 15 14:44:43 2013