RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14559
(405 letters)
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 46.9 bits (111), Expect = 2e-07
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL 223
E+ R L N+ ++ +E+ D F K G + +T A V + D A
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ-IRVGNTPETRGTAYVVYEDIFDAKNAC 63
Query: 224 K-LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNM 272
L+G N+ + L + + + ++ EE + +KE +
Sbjct: 64 DHLSGFNVCNRYLVVLYY-----NANRAFQKMDTKKKEEQLKLLKEKYGI 108
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 43.4 bits (102), Expect = 2e-06
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRE--NDTNKYALVEFSDQACVIPALKLNGTNL 230
+ + + L ++F + G V + + V F DQA V L + L
Sbjct: 7 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 66
Query: 231 KGKTL 235
KT+
Sbjct: 67 DSKTI 71
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 43.4 bits (102), Expect = 2e-06
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 163 EEIRRTLVAI-NIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACV 219
E I+ T + + N+ +++ +L F K G++ + A V ++ +
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 220 IPALK-LNGTNLKGKT 234
A+ LN +G +
Sbjct: 62 QEAISALNNVIPEGGS 77
Score = 26.1 bits (57), Expect = 2.3
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKC 68
+K + V N+ T DQ+ T+FG G + I RD + +V++ +
Sbjct: 4 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ---KNILRDKLTGRPRGVAFVRYNKREE 60
Query: 69 V 69
Sbjct: 61 A 61
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 42.6 bits (100), Expect = 4e-06
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK- 224
R L N+ ++ +E+ F+K G + + + + A
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVE 63
Query: 225 LNGTNLKGKTLQMFHSTQS 243
L+ L+GK L++ + S
Sbjct: 64 LDNMPLRGKQLRVRFACHS 82
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 43.1 bits (101), Expect = 4e-06
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVI 220
E RT+ + + + P++L DFF VG V +R + N A VEF + V
Sbjct: 15 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 74
Query: 221 PALKLNGTNLKGKTLQMFHST 241
A+ L G L G + + S
Sbjct: 75 LAIGLTGQRLLGVPIIVQASQ 95
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 42.6 bits (100), Expect = 4e-06
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL 223
++ NI + +E+ + F G + +R + T + V+F + A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 224 K--LNGTNLKGKTLQ 236
+ T+L G+ L
Sbjct: 69 NALCHSTHLYGRRLV 83
Score = 28.4 bits (63), Expect = 0.49
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSR-ICYVKFFDEKC 68
T + V NI QA + +++ LF G+++ + + ++ R +V F ++
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKT---VRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 69 V--GISQHLTNTVFIDRALVV 87
+ +T R LV+
Sbjct: 64 AKKAFNALCHSTHLYGRRLVL 84
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 42.7 bits (100), Expect = 5e-06
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK--YALVEFSDQA 217
K+ +E R L + + + L +++++ G + + V FS A
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 218 CVIPALKLNGTNLKGKTL 235
V A+ ++ G+ +
Sbjct: 74 EVDAAMAARPHSIDGRVV 91
Score = 26.2 bits (57), Expect = 2.8
Identities = 9/93 (9%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEK 67
+ + + + ++ + T + ++ + GK+ D + +V F
Sbjct: 17 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS---KRSRGFGFVTFSSMA 73
Query: 68 CVGISQHLTNTVFIDRALVVTPYNSGEIPDEQR 100
V + R + + E+
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRA----VAREES 102
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 41.2 bits (96), Expect = 1e-05
Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTRENDTNKYALVEFSDQA 217
K+ E++R+ + + + + L F++ G T + + + V ++
Sbjct: 1 KEPEQLRKLFIG-GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 59
Query: 218 CVIPALKLNGTNLKGKTLQ 236
V A+ + G+ ++
Sbjct: 60 EVDAAMNARPHKVDGRVVE 78
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 41.5 bits (97), Expect = 1e-05
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREND--TNKYALVEFSDQA 217
+K+ + TL N+ + +++ + F K G + I + + VE+ +A
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60
Query: 218 CVIPALK-LNGTNLKGKTLQ 236
A++ +NGT L + ++
Sbjct: 61 DAENAMRYINGTRLDDRIIR 80
Score = 27.6 bits (61), Expect = 0.89
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD---- 65
K+ + V N++ T +Q+ LF G ++ + D C+V+++
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKK---IIMGLDKMKKTACGFCFVEYYSRADA 62
Query: 66 EKCVGISQHLTNTVFIDRALVV 87
E + +++ T DR +
Sbjct: 63 ENAM---RYINGTRLDDRIIRT 81
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.7 bits (95), Expect = 1e-05
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTREN--DTNKYALVEFSDQACVIPALKLNGTNL 230
+ +++ ++F G V I + + F ++ V ++ N+
Sbjct: 6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 65
Query: 231 KGKTLQ 236
+
Sbjct: 66 GLSKCE 71
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 40.8 bits (95), Expect = 2e-05
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L 225
+ L NI +L F + G + + E + + V F + A A + L
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 71
Query: 226 NGTNLKGKTLQMFHSTQSIQKPEAKSN 252
+GT ++G+ +++ ++ +N
Sbjct: 72 HGTVVEGRKIEVNNA-----TARVMTN 93
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 40.1 bits (93), Expect = 2e-05
Identities = 7/66 (10%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVIPALKLNGTNL 230
+ + + +++ +F++ G V+ + + V F + V +++ +
Sbjct: 6 GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 65
Query: 231 KGKTLQ 236
K ++
Sbjct: 66 NNKMVE 71
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 40.4 bits (94), Expect = 3e-05
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
N+++S+ + L D F G + + EN + Y V F Q A++ +NG L
Sbjct: 15 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 74
Query: 232 GKTLQ 236
+ +
Sbjct: 75 DRKVF 79
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.6 bits (92), Expect = 3e-05
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVIPALKLNGTNL 230
+ + ++L D+F K G V + V F + V + L
Sbjct: 6 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 65
Query: 231 KGKTLQ 236
GK +
Sbjct: 66 NGKVID 71
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 40.2 bits (94), Expect = 4e-05
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 176 ESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234
V ++ F K G + +A V++ ++ A+ +G + G+
Sbjct: 26 LVVKKSDVEAIFSKYGKIVGCSVHKG------FAFVQYVNERNARAAVAGEDGRMIAGQV 79
Query: 235 L 235
L
Sbjct: 80 L 80
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.0 bits (93), Expect = 5e-05
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L 225
T+ I ++ Q + F G + IR Y+ V FS A+ +
Sbjct: 19 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSV 74
Query: 226 NGTNLKGKTLQ 236
NGT ++G ++
Sbjct: 75 NGTTIEGHVVK 85
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 39.3 bits (91), Expect = 7e-05
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
N+ + +++ D F K G + I +A VEF D A+ +G +
Sbjct: 21 NLPPDIRTKDIEDVFYKYGAIRDI-DLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 79
Query: 232 GKTLQ 236
G L+
Sbjct: 80 GYRLR 84
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 38.9 bits (90), Expect = 1e-04
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQA 217
+KK+ RTL+A N+ +++ EL + F+ IR +++ + A +EF +A
Sbjct: 9 TSKKVRA-ARTLLAKNLSFNITEDELKEVFED---ALEIRLVSQDGKSKGIAYIEFKSEA 64
Query: 218 CVIPALK-LNGTNLKGKTLQMFHST 241
L+ G + G+++ ++++
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTG 89
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.0 bits (90), Expect = 1e-04
Identities = 9/69 (13%), Positives = 29/69 (42%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG 232
+ + ++ +FF + + + A VEF+ + A+ + N++
Sbjct: 22 GLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQH 81
Query: 233 KTLQMFHST 241
+ +++F ++
Sbjct: 82 RYVELFLNS 90
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 38.5 bits (89), Expect = 1e-04
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY--ALVEFSDQACVIPALK 224
T+ ++E VS L + F + G V VEF + A+K
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
Query: 225 -LNGTNLKGKTLQ 236
++ L GK ++
Sbjct: 70 IMDMIKLYGKPIR 82
Score = 25.4 bits (55), Expect = 5.1
Identities = 7/73 (9%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD-EKCVGISQH 74
V + + + + LF G V + + + ++ D + + +
Sbjct: 14 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI---KI 70
Query: 75 LTNTVFIDRALVV 87
+ + + V
Sbjct: 71 MDMIKLYGKPIRV 83
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 37.0 bits (85), Expect = 4e-04
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 161 KIEEIRRTLVAINIEESVSPQELVDFFQKVGTV-NYIRFCTRENDTNKYALVEFSDQACV 219
K + R++ + ++ ++ + G V N T V F
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 60
Query: 220 IPALKLNGTNLKGKTL 235
++ G K L
Sbjct: 61 KKFVETPGQKYKETDL 76
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 37.1 bits (85), Expect = 6e-04
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 168 TLVAINIEESV-----SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPA 222
L+A + V + + F+ ++ + FS+ A
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADA 62
Query: 223 LK-LNGTNLKGKTLQMFHS 240
L+ T GK ++++ +
Sbjct: 63 RLRLHKTEFLGKEMKLYFA 81
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.6 bits (84), Expect = 8e-04
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
+ + + +K G V + C D V+F + A+ LN
Sbjct: 34 EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF 93
Query: 231 KGKTLQ 236
G+ +
Sbjct: 94 NGQPIH 99
Score = 26.5 bits (58), Expect = 2.2
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDE 66
V++ + + + G+VE++ + D YVKF E
Sbjct: 23 LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHL----VGNVYVKFRRE 78
Query: 67 KCVGIS-QHLTNTVFIDRALVV 87
+ + L N F + +
Sbjct: 79 EDAEKAVIDLNNRWFNGQPIHA 100
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 35.9 bits (82), Expect = 9e-04
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 166 RRTLVAINI-EESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIP 221
R ++ N+ E + L + F+ G++ I + + + A + F ++
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 222 ALKLNGTNLKGKTLQ 236
AL++N + L + +
Sbjct: 64 ALQMNRSLLGNREIS 78
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 35.8 bits (82), Expect = 0.001
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTV--NYIRFCTRENDTNKYALVEFSDQACVIPALK 224
L + + ++L + F K G + I + + + +A V F + A +
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 225 -LNGTNLKGKTL 235
NG L G+ +
Sbjct: 70 RANGMELDGRRI 81
Score = 29.3 bits (65), Expect = 0.18
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD-- 65
P + V ++ T ++ +F G + D I D +V F +
Sbjct: 6 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD---VSIVYDQQSRRSRGFAFVYFENVD 62
Query: 66 --EKCVGISQHLTNTVFIDRALVV 87
++ + R + V
Sbjct: 63 DAKEAK---ERANGMELDGRRIRV 83
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 37.3 bits (85), Expect = 0.001
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK--YALVEFSDQACVIPALK 224
+ + I+E L D+F++ G + I T K +A V F D V +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 157
Query: 225 LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ G ++ +++ K E S
Sbjct: 158 QKYHTVNGHNCEV---RKALSKQEMAS 181
Score = 33.1 bits (74), Expect = 0.036
Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREN--DTNKYALVEFSDQA 217
K+ E++R+ + + + + L F++ GT+ N + + V ++
Sbjct: 1 KEPEQLRKLFIG-GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 59
Query: 218 CVIPALKLNGTNLKGKTLQMFHSTQ 242
V A+ + G+ ++ +
Sbjct: 60 EVDAAMNARPHKVDGRVVEPKRAVS 84
Score = 27.3 bits (59), Expect = 2.7
Identities = 6/62 (9%), Positives = 21/62 (33%)
Query: 8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEK 67
P + + + + ++ + T + +++ F G + D + + Y +
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 68 CV 69
Sbjct: 63 AA 64
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 35.9 bits (82), Expect = 0.002
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 167 RTLVAINI-EESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK- 224
L+ N+ E V+PQ L F G V ++ + + ALV+ +D A+
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL---FNKKENALVQMADGNQAQLAMSH 59
Query: 225 LNGTNLKGKTLQ-MFHSTQSIQKPEAKSNE 253
LNG L GK ++ Q++Q P +
Sbjct: 60 LNGHKLHGKPIRITLSKHQNVQLPREGQED 89
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 170 VAINIEESVSPQ----------ELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACV 219
V +N++ + EL+ GT+ +R LV F+D
Sbjct: 18 VVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN---QGQ---MLVTFADSHSA 71
Query: 220 IPALKLNGTNLKGKTLQM 237
+ L ++G +KG+ +++
Sbjct: 72 LSVLDVDGMKVKGRAVKI 89
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 34.7 bits (79), Expect = 0.003
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRF----CTRENDTNK---YALVEFSDQACV 219
R L NI ++ + ++DFF + + N+ +A +EF
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 220 IPALKLNGTNLKGKTL 235
A+ +G +G++L
Sbjct: 62 TQAMAFDGIIFQGQSL 77
Score = 29.7 bits (66), Expect = 0.14
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 16 VANIAPQATRDQMQTLFGYLGKVEDLRL--YPIARDVSIPVQSRICYVKFFDEKCVGISQ 73
V NI T + M F ++ L V I +++F +
Sbjct: 6 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 65
Query: 74 HLTNTVFIDRALVV 87
+F ++L +
Sbjct: 66 AFDGIIFQGQSLKI 79
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 34.3 bits (78), Expect = 0.004
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 161 KIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY--ALVEFSDQAC 218
++ R++ NI + ++L D F +VG V R E+ DQ
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 219 VIPALK-LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
+ A++ LNG G+ L++ ++ K E KS
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 96
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 33.9 bits (77), Expect = 0.005
Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 160 KKIEEIRRTLVAINI-EESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQ-- 216
K E RR + ++ +L+ + G ++ + A +E +
Sbjct: 2 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTED 57
Query: 217 -ACVIPALKLNGTNLKGKTLQMFHSTQ 242
+ + GK +++ S +
Sbjct: 58 AQAAVDYYTTTPALVFGKPVRVHLSQK 84
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 33.5 bits (76), Expect = 0.005
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVIPALKLNGTNL 230
I+E L D+F++ G + I T +A V F D V + +
Sbjct: 9 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV 68
Query: 231 KGKTLQ 236
G +
Sbjct: 69 NGHNCE 74
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 32.8 bits (74), Expect = 0.007
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY--ALVEFSDQACVIPALK-LNGTN 229
++ + Q+LV Q G + + + V+F + A+ L +
Sbjct: 5 GLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 64
Query: 230 LKGKTLQ 236
++ + +
Sbjct: 65 VQAQMAK 71
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.1 bits (75), Expect = 0.009
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVIPALK 224
T+ N+ E +L + F+ G+++ I + +A + F + A+
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 225 -LNGTNLKGKTLQ 236
++G L
Sbjct: 69 GVSGFGYDHLILN 81
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 32.4 bits (73), Expect = 0.020
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 19/101 (18%)
Query: 173 NIEESVSPQELVDFFQKVGT----VNYIRFCTRENDTNKYALVEFSDQACV---IPALKL 225
I + +E+++ KV V + +A VE+ L
Sbjct: 8 GIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMP 67
Query: 226 NGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRV 266
L G + + +PE + E+ M V
Sbjct: 68 GRIQLWGHQIAV-----DWAEPEIDVD-------EDVMETV 96
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 32.6 bits (73), Expect = 0.028
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 149 QYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY 208
Q +P T + + +R +V I +V +L F++ G + ++
Sbjct: 26 QQQHIPPTQMNPEPDVLRNLMVN-YIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSR 84
Query: 209 --ALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSIQKP 247
V+F + A+ LNG N+ K L++ + Q+P
Sbjct: 85 GYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRP 126
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 31.4 bits (71), Expect = 0.029
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 182 ELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTL 235
++ F + G + N + + + + AL +G +
Sbjct: 19 YILLQFAQYGNILKHVMSNTGN----WMHIRYQSKLQARKALSKDGRIFGESIM 68
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 30.0 bits (67), Expect = 0.092
Identities = 9/82 (10%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS-QH 74
+ N+ T + ++ +F +G ++ + + + +V++ + + +
Sbjct: 3 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 62
Query: 75 LTNTVFIDRALVVTPYNSGEIP 96
L L V P
Sbjct: 63 LQGHTVDGHKLEVRISERATKP 84
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 30.2 bits (67), Expect = 0.12
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK--YALVEFSDQACVIPALKLNGTNL 230
NI S++ +++ F + + +N+ ALV+F ++ + +L+ L
Sbjct: 15 NIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 74
Query: 231 KGKTLQMFHSTQSIQKPEAKS 251
G+ + T + K+
Sbjct: 75 NGREAFVHVVTLEDMREIEKN 95
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 29.5 bits (66), Expect = 0.14
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS-QH 74
V ++ P T + F G + + RD+ YV F +
Sbjct: 5 VGDLHPDVTEAMLYEKFSPAGPILS---IRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 75 LTNTVFIDRALVV 87
+ V + + +
Sbjct: 62 MNFDVIKGKPVRI 74
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.8 bits (61), Expect = 0.77
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK--YALVEFSDQACVIPALKLNGTNL 230
+ + L +F+ G + T Y V +D+A A K +
Sbjct: 17 GLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPII 76
Query: 231 KGKTL 235
G+
Sbjct: 77 DGRKA 81
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 27.9 bits (61), Expect = 0.98
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTN--KYALVEFSDQACVIPALKLNGTNL 230
+ + ++DFF+K+ V + + VEF ++A AL + +
Sbjct: 25 GLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYM 84
Query: 231 KGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRV 266
+ +Q+ T+ + +I+ R+
Sbjct: 85 GNRFIQVHPITK----------KGMLEKIDMIRKRL 110
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 27.3 bits (60), Expect = 1.0
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD-EKCVGISQH 74
V + T ++ LF +G + R+ + + + + D ++ + +
Sbjct: 7 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI---KV 63
Query: 75 LTNTVFIDRALVV 87
L ++ L V
Sbjct: 64 LNGITVRNKRLKV 76
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 26.8 bits (59), Expect = 1.3
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD----EKCVGI 71
V+N+ + +Q LF G ++ ++ V F K +
Sbjct: 5 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAM-- 58
Query: 72 SQHLTNTVFIDRALVV 87
+ R + +
Sbjct: 59 -KQYNGVPLDGRPMNI 73
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 26.9 bits (59), Expect = 1.5
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDE 66
A ++ + V+ + T+ +++ LF G++ I D V + +++F
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT---SRILVDQVTGVSRGVGFIRFDKR 58
Query: 67 KCV 69
Sbjct: 59 IEA 61
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac
{Lactococcus lactis [TaxId: 1358]}
Length = 104
Score = 26.9 bits (60), Expect = 1.5
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 248 EAKS------NEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIV 301
+A+S A + +A S V EA + I+ A G+L+++ P + ++
Sbjct: 19 DARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPY-SVTMM 77
Query: 302 -----LIVVDVALDLALEI 315
L+ + D+ +
Sbjct: 78 HGQLHLMTTILLKDVIHHL 96
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 27.1 bits (58), Expect = 4.3
Identities = 20/88 (22%), Positives = 31/88 (35%)
Query: 203 NDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEA 262
N+ L SDQ +P L L G N GK + +SI P + R+ A
Sbjct: 16 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 75
Query: 263 MSRVKEAQNMISAAIDPVIGILSKDKKK 290
+R E + S + + +
Sbjct: 76 SNRKLELNVVSSPYHLEITPSDMGNNDR 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,468,343
Number of extensions: 70782
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 58
Length of query: 405
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,213,086
Effective search space: 385761348
Effective search space used: 385761348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)