BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14560
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 117/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA Y SGK
Sbjct: 210 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
GP+++E+ TYRY GHSMSDPG S+R DPI K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
+A++ATFE K LH+L EGP +T++D L YYR MQT+RR+E A LYK+K+IRG
Sbjct: 22 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
FCHL GQ
Sbjct: 82 FCHLCDGQ 89
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 13/103 (12%)
Query: 163 FKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTG 222
+K+K++ D +EAC VG+ A + D +I+A+R HG+T+ G+SV +L+ELTG
Sbjct: 74 YKQKIIRGFCHLCDG-QEACCVGLEAGINPTDHLITAFRAHGFTFTRGLSVREILAELTG 132
Query: 223 RRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQT 265
R+ G CAKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 133 RKGG------------CAKGKGGSMHMYAKNFYGGNGIVGAQV 163
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 117/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA Y SGK
Sbjct: 210 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
GP+++E+ TYRY GHSMSDPG S+R DPI K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
+A++ATFE K LH+L EGP +T++D L YYR MQT+RR+E A LYK+K+IRG
Sbjct: 22 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
FCHL GQ
Sbjct: 82 FCHLCDGQ 89
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 13/103 (12%)
Query: 163 FKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTG 222
+K+K++ D +EAC VG+ A + D +I+AYR HG+T+ G+SV +L+ELTG
Sbjct: 74 YKQKIIRGFCHLCDG-QEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTG 132
Query: 223 RRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQT 265
R+ G CAKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 133 RKGG------------CAKGKGGSMHMYAKNFYGGNGIVGAQV 163
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 254 bits (648), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 116/180 (64%), Positives = 139/180 (77%), Gaps = 12/180 (6%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 192
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA Y SGK
Sbjct: 193 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 252
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
GP+++E+ TYRY GH MSDPG S+R DPI K++M+NS LA+V+ELKE
Sbjct: 253 GPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 312
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%)
Query: 277 SYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIR 336
S+A++ATFE K LH+L EGP +T++D L YYR MQT+RR+E A LYK+K+IR
Sbjct: 4 SFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIR 63
Query: 337 GFCHLYSGQ 345
GFCHL GQ
Sbjct: 64 GFCHLCDGQ 72
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 13/103 (12%)
Query: 163 FKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTG 222
+K+K++ D +EAC VG+ A + D +I+AYR HG+T+ G+SV +L+ELTG
Sbjct: 57 YKQKIIRGFCHLCDG-QEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTG 115
Query: 223 RRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQT 265
R+ G CAKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 116 RKGG------------CAKGKGGSMHMYAKNFYGGNGIVGAQV 146
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 115/180 (63%), Positives = 140/180 (77%), Gaps = 12/180 (6%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
CI++CENN YGMGT+ ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA Y SGK
Sbjct: 210 CIFICENNRYGMGTAVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
GP+++E+ TYRY GHSMSDPG ++R DPI K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
+A++ATFE K LH+L EGP +T++D L YYR MQT+RR+E A LYK+K+IRG
Sbjct: 22 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
FCHL GQ
Sbjct: 82 FCHLCDGQ 89
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 13/103 (12%)
Query: 163 FKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTG 222
+K+K++ D +EAC VG+ A + D +I+AYR HG+T+ G+SV +L+ELTG
Sbjct: 74 YKQKIIRGFCHLCDG-QEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTG 132
Query: 223 RRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQT 265
R+ G CAKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 133 RKGG------------CAKGKGGSMHMYAKNFYGGNGIVGAQV 163
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 251 bits (641), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 114/180 (63%), Positives = 139/180 (77%), Gaps = 12/180 (6%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
CI++CENN YGMGT+ ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA Y SGK
Sbjct: 210 CIFICENNRYGMGTAVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
GP+++E+ TYRY GH MSDPG ++R DPI K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
+A++ATFE K LH+L EGP +T++D L YYR MQT+RR+E A LYK+K+IRG
Sbjct: 22 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
FCHL GQ
Sbjct: 82 FCHLCDGQ 89
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 13/103 (12%)
Query: 163 FKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTG 222
+K+K++ D +EAC VG+ A + D +I+AYR HG+T+ G+SV +L+ELTG
Sbjct: 74 YKQKIIRGFCHLCDG-QEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTG 132
Query: 223 RRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQT 265
R+ G CAKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 133 RKGG------------CAKGKGGSMHMYAKNFYGGNGIVGAQV 163
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/180 (62%), Positives = 134/180 (74%), Gaps = 12/180 (6%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ FEAYN A LW +P
Sbjct: 133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLP 192
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
CI++CENN YG GTS ER++ASTDYY RGD+IPG+ VDG D+L VREA++FA Y SGK
Sbjct: 193 CIFICENNRYGXGTSVERAAASTDYYKRGDFIPGLRVDGXDILCVREATRFAAAYCRSGK 252
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
GP++ E+ TYRY GHS SDPG S+R DPI K++ +NS LA+V+ELKE
Sbjct: 253 GPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVNSNLASVEELKE 312
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 277 SYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIR 336
S+A++ATFE K LH+L EGP +T++D L YYR QT+RR E A LYK+K+IR
Sbjct: 4 SFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRXXQTVRRXELKADQLYKQKIIR 63
Query: 337 GFCHLYSGQ 345
GFCHL GQ
Sbjct: 64 GFCHLCDGQ 72
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 13/103 (12%)
Query: 163 FKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTG 222
+K+K++ D +EAC VG+ A + D +I+AYR HG+T+ G+SV +L+ELTG
Sbjct: 57 YKQKIIRGFCHLCDG-QEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTG 115
Query: 223 RRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQT 265
R+ G CAKGKGGS H YAKNFYGGNGIVGAQ
Sbjct: 116 RKGG------------CAKGKGGSXHXYAKNFYGGNGIVGAQV 146
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 21 IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
I+GAQ G+A + +G V GDG ++QG +E N A + P I+V +NN
Sbjct: 143 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN 202
Query: 81 GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
+ + T E+ + + + IPGI VDGMD LAV A K A A +G+GP ++E
Sbjct: 203 RFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 262
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
+ +RY H+MS D T ++ K L +E A D L
Sbjct: 263 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 296
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 21 IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
I+GAQ G+A + +G V GDG ++QG +E N A + P I+V +NN
Sbjct: 144 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN 203
Query: 81 GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
+ + T E+ + + + IPGI VDGMD LAV A K A A +G+GP ++E
Sbjct: 204 RFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 263
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
+ +RY H+MS D T ++ K L +E A D L
Sbjct: 264 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 297
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 21 IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
I+GAQ G+A + +G V GDG ++QG +E N A + P I+V +NN
Sbjct: 144 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN 203
Query: 81 GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
+ T E+ + + + IPGI VDGMD LAV A K A A +G+GP ++E
Sbjct: 204 RFAASTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 263
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
+ +RY H+MS D T ++ K L +E A D L
Sbjct: 264 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 297
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 21 IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
I+GAQ G+A + +G V GDG ++QG ++ N A + P I+V +NN
Sbjct: 143 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNN 202
Query: 81 GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
+ + T E+ + + + IPGI VDGMD LAV A K A A +G+GP ++E
Sbjct: 203 RFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 262
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
+ +RY H+MS D T ++ K L +E A D L
Sbjct: 263 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 296
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
NF+ + + VP G A + + TG V +GDGA+++G + N A + G P
Sbjct: 138 NFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPA 197
Query: 74 IYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSG 131
+++ ENN Y + + S + IPG VDGMDVLA K AV A G
Sbjct: 198 VFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRG 257
Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFK 164
+GP ++E+ YRY HS +D + +R DPI F+
Sbjct: 258 EGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFR 301
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR HS SD ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAFR 301
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR HS SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAYR 301
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR HS SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAYR 301
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR HS SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAYR 301
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR H+ SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHNTSDDSSAYR 301
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR H SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHDTSDDSSAYR 301
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR H SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHETSDDSSAYR 301
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR H SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHQTSDDSSAYR 301
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR H SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHXTSDDSSAYR 301
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR S SD ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR S SD ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR S SD ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR S SD ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 14/182 (7%)
Query: 2 QQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFE 61
+Q I+ + F+ +G + Q G A A+ KG + A GDGA+ +
Sbjct: 164 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 223
Query: 62 AYNIAKLWGIPCIYVCENNGYGMGT-SAERSSASTDYYTRGDY--IPGIWVDGMDVLAVR 118
A A ++ P I NN + + T A ST + RG I + VDG D +AV
Sbjct: 224 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVY 283
Query: 119 EASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKM 167
AS++A A G GP ++E VTYR HS SD + +R DPI K+ +
Sbjct: 284 AASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHL 343
Query: 168 LN 169
+
Sbjct: 344 IK 345
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR S SD +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAYR 301
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 14/168 (8%)
Query: 15 FYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCI 74
F+ +G + Q G A A+ KG + A GDGA+ + A A ++ P I
Sbjct: 176 FFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVI 235
Query: 75 YVCENNGYGMGT-SAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSG 131
NN + + T A ST + RG I + VDG D +AV AS++A A G
Sbjct: 236 LNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRG 295
Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKML 168
GP ++E VTYR HS SD + +R DPI K+ ++
Sbjct: 296 LGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLI 343
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TYR S S ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSADSSAFR 301
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
++F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
I+ C NNGY + T RG PG I VDG DV AV A+K A
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
A + P ++E +TY S SD +++R
Sbjct: 272 AVAENQPFLIEAMTYAIGHASTSDDSSAYR 301
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 48 LYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYTR-GD 102
++GD A + QG E N++K G + + NN G TS + ST Y T G
Sbjct: 354 IHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGK 413
Query: 103 YI--PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRD-- 158
+ P V+ D AV ++ A+++ ++ K + +++V YR GH+ +D ++ +
Sbjct: 414 MVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLM 473
Query: 159 ---------PITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYR---VHGWT 206
P + +K+ ++AT+++ E + R + D +++ +R +H +T
Sbjct: 474 YQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL-YRDALDAGDCVVAEWRPMNMHSFT 532
Query: 207 Y 207
+
Sbjct: 533 W 533
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 48 LYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYTR-GD 102
++GD A + QG E N++K G + + NN G TS + ST Y T G
Sbjct: 354 IHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGK 413
Query: 103 YI--PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRD-- 158
+ P V+ D AV ++ A+++ ++ K + +++V YR GH+ +D ++ +
Sbjct: 414 MVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLM 473
Query: 159 ---------PITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYR---VHGWT 206
P + +K+ ++AT+++ E + R + D +++ +R +H +T
Sbjct: 474 YQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL-YRDALDAGDCVVAEWRPMNMHSFT 532
Query: 207 Y 207
+
Sbjct: 533 W 533
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 44 VCFALYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYT 99
V L+GD A + QG E N+A L G I++ NN G T+A S S++Y T
Sbjct: 524 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAPTDSRSSEYCT 582
Query: 100 RGDYI---PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD 151
+ P V+G D A ++ AV++ + K +V++++ YR GH+ D
Sbjct: 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 637
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 44 VCFALYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYT 99
V L+GD A + QG E N+A L G I++ NN G T+A S S++Y T
Sbjct: 279 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAPTDSRSSEYCT 337
Query: 100 RGDYI---PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD 151
+ P V+G D A ++ AV++ + K +V++++ YR GH+ D
Sbjct: 338 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 392
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 383 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 432
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 433 --YSISALWTAAQYNIPTIFVIMNNGTYG----AARWFAGV---LEAENVPGLDVPGIDF 483
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 484 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 523
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 383 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 432
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 433 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 483
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 484 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 523
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 383 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 432
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 433 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 483
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 484 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 523
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 383 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 432
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 433 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 483
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 484 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 523
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 383 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 432
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 433 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 483
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 484 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 523
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 383 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 432
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 433 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 483
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 484 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 523
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 382 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 431
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 432 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 482
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 483 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 522
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 383 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 432
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 433 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 483
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 484 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 523
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
M Q + + NP F G+ G +P G+ A + A+ GDG++N
Sbjct: 382 MWQRLNMRNPGSYYFCAAGGL-GFALPAAIGVQLAEPERQV----IAVIGDGSAN----- 431
Query: 61 EAYNIAKLW-----GIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDV 114
Y+I+ LW IP I+V NNG YG A R A + +PG+ V G+D
Sbjct: 432 --YSISALWTAAQYNIPTIFVIMNNGTYG----ALRWFAGV---LEAENVPGLDVPGIDF 482
Query: 115 LAVR-------------EASKFAVNYASSGKGPLVLEVVT 141
A+ E K ++ A S KGP+++EV T
Sbjct: 483 RALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 522
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 29 GTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIA 66
G GIA AA+ +G + GDGA G FEA N A
Sbjct: 130 GIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHA 167
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 264 QTLKSLLKSISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLE 323
+ LK + IS + Y SE +SE S+ + V +Q + Y + +IR ++
Sbjct: 158 ELLKMIKPVISSKKYGSEDILS------ELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVK 211
Query: 324 TSAGNLYKEKVIRG--FCHLYSGQVSSFLQE 352
G+L VI+G F G V S ++
Sbjct: 212 IMGGSLSNSTVIKGMVFNREPEGHVKSLSED 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,176,892
Number of Sequences: 62578
Number of extensions: 485056
Number of successful extensions: 1073
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 59
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)