Query psy14560
Match_columns 355
No_of_seqs 390 out of 2490
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:00:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 5.8E-42 1.3E-46 334.0 19.2 182 11-192 127-322 (358)
2 PF00676 E1_dh: Dehydrogenase 100.0 1.3E-39 2.7E-44 314.8 16.3 183 12-194 93-289 (300)
3 KOG0225|consensus 100.0 3.4E-39 7.4E-44 306.3 16.2 212 4-227 152-375 (394)
4 PLN02269 Pyruvate dehydrogenas 100.0 1.4E-37 2.9E-42 307.0 17.2 191 3-195 122-324 (362)
5 TIGR03182 PDH_E1_alph_y pyruva 100.0 1E-36 2.2E-41 296.5 17.9 188 4-193 95-295 (315)
6 CHL00149 odpA pyruvate dehydro 100.0 2E-36 4.3E-41 297.2 18.8 191 3-195 112-322 (341)
7 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 3.4E-36 7.4E-41 290.0 19.1 187 5-192 90-289 (293)
8 PLN02374 pyruvate dehydrogenas 100.0 9.4E-36 2E-40 299.5 19.2 190 4-195 179-388 (433)
9 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.1E-35 2.5E-40 292.0 18.1 186 10-195 112-310 (341)
10 PRK09404 sucA 2-oxoglutarate d 100.0 5E-33 1.1E-37 299.5 16.6 218 18-236 312-586 (924)
11 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.4E-32 3E-37 295.1 17.8 225 12-236 307-588 (929)
12 KOG1182|consensus 100.0 3.6E-33 7.8E-38 263.4 11.3 184 8-191 181-379 (432)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 1.6E-31 3.5E-36 252.8 13.9 147 13-160 106-263 (265)
14 KOG0225|consensus 99.9 1.3E-26 2.9E-31 220.6 5.7 79 272-350 24-102 (394)
15 PRK12270 kgd alpha-ketoglutara 99.9 7.4E-22 1.6E-26 209.0 16.9 220 16-237 615-890 (1228)
16 cd02012 TPP_TK Thiamine pyroph 99.9 1.7E-21 3.6E-26 184.3 15.5 134 14-150 99-235 (255)
17 cd02007 TPP_DXS Thiamine pyrop 99.9 3E-21 6.5E-26 176.0 14.5 125 14-146 69-194 (195)
18 PRK12754 transketolase; Review 99.8 3.6E-20 7.8E-25 195.7 16.4 133 12-148 106-252 (663)
19 PRK12315 1-deoxy-D-xylulose-5- 99.8 2E-20 4.3E-25 195.7 14.1 129 17-149 110-250 (581)
20 TIGR00232 tktlase_bact transke 99.8 5.5E-20 1.2E-24 194.7 16.6 132 12-148 102-248 (653)
21 PRK12753 transketolase; Review 99.8 6.7E-20 1.5E-24 194.2 16.0 134 12-149 106-253 (663)
22 PRK05899 transketolase; Review 99.8 6.9E-20 1.5E-24 193.3 15.9 140 13-157 111-263 (624)
23 cd02013 TPP_Xsc_like Thiamine 99.8 3.5E-20 7.6E-25 168.8 11.2 133 3-144 36-181 (196)
24 PTZ00089 transketolase; Provis 99.8 1.3E-19 2.9E-24 192.0 16.3 137 13-153 109-260 (661)
25 cd02006 TPP_Gcl Thiamine pyrop 99.8 5.7E-20 1.2E-24 168.0 10.4 134 3-144 40-196 (202)
26 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 1.6E-19 3.5E-24 160.6 12.7 127 3-141 31-171 (172)
27 PLN02790 transketolase 99.8 3E-19 6.5E-24 189.2 16.9 134 12-149 97-245 (654)
28 COG3959 Transketolase, N-termi 99.8 3.7E-19 8E-24 162.4 13.0 130 11-143 110-242 (243)
29 PRK05444 1-deoxy-D-xylulose-5- 99.8 1.1E-18 2.3E-23 182.9 14.7 134 12-149 109-249 (580)
30 COG1071 AcoA Pyruvate/2-oxoglu 99.8 1.1E-19 2.4E-24 177.9 6.1 109 155-275 32-152 (358)
31 cd02015 TPP_AHAS Thiamine pyro 99.8 1.6E-18 3.4E-23 156.3 12.7 129 3-143 33-175 (186)
32 cd02010 TPP_ALS Thiamine pyrop 99.8 2E-18 4.3E-23 154.9 12.7 129 3-143 31-171 (177)
33 PF02775 TPP_enzyme_C: Thiamin 99.8 6.6E-19 1.4E-23 153.7 8.8 127 3-139 11-153 (153)
34 cd02003 TPP_IolD Thiamine pyro 99.8 2.5E-18 5.5E-23 157.6 11.5 129 3-143 31-185 (205)
35 cd00568 TPP_enzymes Thiamine p 99.8 2.9E-18 6.3E-23 150.5 11.3 126 4-141 30-168 (168)
36 cd02002 TPP_BFDC Thiamine pyro 99.8 4.9E-18 1.1E-22 151.5 12.4 126 3-141 33-178 (178)
37 cd02014 TPP_POX Thiamine pyrop 99.8 3E-18 6.6E-23 153.5 11.0 129 3-143 34-174 (178)
38 PF00456 Transketolase_N: Tran 99.8 3.4E-18 7.3E-23 167.5 10.7 134 12-149 103-250 (332)
39 TIGR00204 dxs 1-deoxy-D-xylulo 99.8 7.9E-18 1.7E-22 177.3 13.9 130 17-150 108-282 (617)
40 cd02005 TPP_PDC_IPDC Thiamine 99.7 1.8E-17 4E-22 149.4 12.9 130 3-143 33-175 (183)
41 COG0028 IlvB Thiamine pyrophos 99.7 8E-18 1.7E-22 175.0 11.8 131 2-144 390-533 (550)
42 PLN02269 Pyruvate dehydrogenas 99.7 1.3E-18 2.9E-23 172.1 4.3 109 155-275 35-154 (362)
43 cd02017 TPP_E1_EcPDC_like Thia 99.7 1.1E-16 2.5E-21 158.2 15.5 132 14-148 112-323 (386)
44 TIGR01504 glyox_carbo_lig glyo 99.7 1.9E-17 4.1E-22 173.7 10.3 133 3-143 401-556 (588)
45 cd02009 TPP_SHCHC_synthase Thi 99.7 4.8E-17 1E-21 145.6 10.4 126 3-141 33-174 (175)
46 PRK08327 acetolactate synthase 99.7 8.8E-17 1.9E-21 168.0 13.7 134 3-142 413-567 (569)
47 PRK06154 hypothetical protein; 99.7 8E-17 1.7E-21 168.3 13.3 132 3-143 414-556 (565)
48 PRK07524 hypothetical protein; 99.7 8.3E-17 1.8E-21 166.9 13.1 132 3-146 389-533 (535)
49 cd02001 TPP_ComE_PpyrDC Thiami 99.7 2.2E-16 4.8E-21 139.2 11.4 111 19-142 41-155 (157)
50 PRK07979 acetolactate synthase 99.7 1.5E-16 3.3E-21 166.3 12.2 132 3-143 404-549 (574)
51 PRK09107 acetolactate synthase 99.7 1.6E-16 3.6E-21 166.9 12.4 129 3-143 413-555 (595)
52 PRK11269 glyoxylate carboligas 99.7 1.1E-16 2.5E-21 167.9 10.6 133 3-143 402-557 (591)
53 PRK07525 sulfoacetaldehyde ace 99.7 1.1E-16 2.4E-21 167.9 9.9 134 3-145 418-565 (588)
54 PRK12571 1-deoxy-D-xylulose-5- 99.7 3.8E-16 8.3E-21 165.2 13.9 126 20-148 119-289 (641)
55 PRK06965 acetolactate synthase 99.7 1.6E-16 3.5E-21 166.7 11.0 130 3-143 420-563 (587)
56 KOG0450|consensus 99.7 1.8E-16 3.9E-21 162.7 10.7 219 16-238 370-653 (1017)
57 PRK05858 hypothetical protein; 99.7 2E-16 4.4E-21 164.3 11.4 129 3-143 390-531 (542)
58 COG0567 SucA 2-oxoglutarate de 99.7 2.6E-16 5.6E-21 167.1 12.2 221 16-237 294-569 (906)
59 CHL00149 odpA pyruvate dehydro 99.7 3.2E-17 6.9E-22 161.4 4.9 108 155-274 25-143 (341)
60 PRK06725 acetolactate synthase 99.7 2.4E-16 5.3E-21 164.8 11.6 129 3-143 405-546 (570)
61 PRK12474 hypothetical protein; 99.7 2.6E-16 5.7E-21 162.7 11.7 126 3-141 373-518 (518)
62 TIGR02418 acolac_catab acetola 99.7 3.2E-16 6.9E-21 162.7 12.4 130 3-144 391-532 (539)
63 TIGR03182 PDH_E1_alph_y pyruva 99.7 3.3E-17 7.2E-22 159.7 4.7 109 155-275 7-126 (315)
64 cd03372 TPP_ComE Thiamine pyro 99.7 7.1E-16 1.5E-20 138.7 13.0 113 18-144 40-157 (179)
65 TIGR02720 pyruv_oxi_spxB pyruv 99.7 3.7E-16 8E-21 163.5 12.8 130 3-142 391-532 (575)
66 TIGR03457 sulphoacet_xsc sulfo 99.7 3.6E-16 7.8E-21 163.7 12.5 132 3-143 413-558 (579)
67 PRK09124 pyruvate dehydrogenas 99.7 5.5E-16 1.2E-20 162.1 13.3 129 3-143 391-531 (574)
68 PRK08979 acetolactate synthase 99.7 4E-16 8.7E-21 163.2 12.2 130 3-143 404-547 (572)
69 cd03371 TPP_PpyrDC Thiamine py 99.7 8.8E-16 1.9E-20 139.2 12.8 115 19-145 47-166 (188)
70 PRK06466 acetolactate synthase 99.7 5.1E-16 1.1E-20 162.4 12.6 130 3-143 406-549 (574)
71 cd02008 TPP_IOR_alpha Thiamine 99.7 9E-16 2E-20 137.6 12.5 116 17-141 48-176 (178)
72 PLN02234 1-deoxy-D-xylulose-5- 99.7 1.1E-15 2.5E-20 160.5 15.1 137 13-151 170-330 (641)
73 TIGR03393 indolpyr_decarb indo 99.7 4E-16 8.7E-21 162.0 11.4 128 3-142 387-527 (539)
74 cd02011 TPP_PK Thiamine pyroph 99.7 5.1E-16 1.1E-20 144.1 10.6 116 10-129 52-174 (227)
75 PRK06163 hypothetical protein; 99.7 1.1E-15 2.3E-20 140.3 12.6 114 18-143 55-174 (202)
76 PRK08273 thiamine pyrophosphat 99.7 6.8E-16 1.5E-20 162.2 12.9 130 3-143 398-547 (597)
77 PRK06546 pyruvate dehydrogenas 99.7 8.2E-16 1.8E-20 161.1 13.5 129 3-143 391-531 (578)
78 COG0021 TktA Transketolase [Ca 99.7 1.4E-15 3.1E-20 156.5 14.8 134 12-149 108-255 (663)
79 PLN02582 1-deoxy-D-xylulose-5- 99.7 7.2E-16 1.6E-20 163.2 12.9 136 13-150 137-328 (677)
80 PRK06457 pyruvate dehydrogenas 99.7 8.1E-16 1.8E-20 160.1 13.2 129 3-143 379-520 (549)
81 TIGR03846 sulfopy_beta sulfopy 99.6 1E-15 2.3E-20 138.0 11.9 111 19-143 41-157 (181)
82 PRK07586 hypothetical protein; 99.6 6.6E-16 1.4E-20 159.3 12.0 126 3-141 369-514 (514)
83 PRK08322 acetolactate synthase 99.6 9.9E-16 2.2E-20 159.1 13.2 129 3-143 389-529 (547)
84 PRK06882 acetolactate synthase 99.6 8.2E-16 1.8E-20 160.7 12.3 130 3-143 404-547 (574)
85 cd02000 TPP_E1_PDC_ADC_BCADC T 99.6 1.2E-16 2.6E-21 154.2 5.3 106 158-275 6-120 (293)
86 PRK08266 hypothetical protein; 99.6 9.7E-16 2.1E-20 159.1 12.5 131 4-146 386-529 (542)
87 PRK08155 acetolactate synthase 99.6 1.3E-15 2.9E-20 158.9 13.2 129 3-143 402-544 (564)
88 PRK07418 acetolactate synthase 99.6 7.5E-16 1.6E-20 162.5 11.3 126 4-142 419-559 (616)
89 PRK08617 acetolactate synthase 99.6 1.1E-15 2.4E-20 159.1 12.3 130 3-144 397-538 (552)
90 PLN02470 acetolactate synthase 99.6 1.1E-15 2.4E-20 160.2 12.3 129 3-143 409-558 (585)
91 PRK06048 acetolactate synthase 99.6 1.5E-15 3.2E-20 158.5 12.9 129 3-143 397-539 (561)
92 PRK06456 acetolactate synthase 99.6 1.5E-15 3.2E-20 158.7 12.7 129 3-143 404-546 (572)
93 PRK08611 pyruvate oxidase; Pro 99.6 1.6E-15 3.4E-20 158.9 12.7 129 3-143 391-531 (576)
94 KOG0451|consensus 99.6 1.1E-15 2.4E-20 153.9 10.9 182 7-188 270-482 (913)
95 PLN02573 pyruvate decarboxylas 99.6 1.4E-15 2.9E-20 159.5 12.1 124 9-142 417-552 (578)
96 PRK08527 acetolactate synthase 99.6 1.8E-15 3.8E-20 158.0 12.5 129 3-143 397-539 (563)
97 PRK08978 acetolactate synthase 99.6 1.8E-15 4E-20 157.3 12.6 129 3-143 384-526 (548)
98 PLN02374 pyruvate dehydrogenas 99.6 2.2E-16 4.8E-21 159.5 5.5 108 155-274 91-209 (433)
99 TIGR00118 acolac_lg acetolacta 99.6 1.4E-15 3E-20 158.6 11.5 129 3-143 395-537 (558)
100 TIGR03254 oxalate_oxc oxalyl-C 99.6 2.2E-15 4.8E-20 156.9 12.9 128 3-143 400-539 (554)
101 PRK07064 hypothetical protein; 99.6 1.6E-15 3.4E-20 157.5 11.5 127 3-142 389-528 (544)
102 cd03376 TPP_PFOR_porB_like Thi 99.6 2.6E-15 5.6E-20 140.8 11.7 120 13-142 55-200 (235)
103 cd03375 TPP_OGFOR Thiamine pyr 99.6 4.6E-15 9.9E-20 135.0 13.0 117 16-142 47-184 (193)
104 CHL00099 ilvB acetohydroxyacid 99.6 2.4E-15 5.2E-20 157.8 11.9 126 4-142 415-555 (585)
105 PRK06112 acetolactate synthase 99.6 2.3E-15 5E-20 157.6 11.6 129 3-143 419-561 (578)
106 PRK07282 acetolactate synthase 99.6 1.9E-15 4.2E-20 157.9 10.9 128 3-143 401-542 (566)
107 TIGR00759 aceE pyruvate dehydr 99.6 8.4E-15 1.8E-19 156.4 15.6 131 15-148 184-394 (885)
108 PRK07092 benzoylformate decarb 99.6 2E-15 4.4E-20 156.5 10.7 126 3-141 391-529 (530)
109 PRK07789 acetolactate synthase 99.6 2.3E-15 5E-20 158.7 11.0 130 3-143 430-577 (612)
110 PRK07710 acetolactate synthase 99.6 3.6E-15 7.9E-20 155.9 12.1 129 3-143 407-549 (571)
111 PRK09259 putative oxalyl-CoA d 99.6 8.3E-15 1.8E-19 153.2 13.0 128 3-143 407-547 (569)
112 PRK06276 acetolactate synthase 99.6 6.7E-15 1.5E-19 154.4 11.8 129 3-143 402-544 (586)
113 PRK08199 thiamine pyrophosphat 99.6 7.4E-15 1.6E-19 153.1 11.9 128 3-143 399-539 (557)
114 cd02018 TPP_PFOR Thiamine pyro 99.6 1.3E-14 2.9E-19 136.1 11.2 118 18-142 62-203 (237)
115 TIGR03186 AKGDH_not_PDH alpha- 99.6 2.2E-14 4.7E-19 154.6 14.1 131 15-148 184-394 (889)
116 KOG0523|consensus 99.6 3E-14 6.6E-19 145.3 13.5 133 10-146 108-245 (632)
117 TIGR03394 indol_phenyl_DC indo 99.5 3.2E-14 6.8E-19 147.9 11.8 121 10-142 393-521 (535)
118 PRK07449 2-succinyl-5-enolpyru 99.5 1.4E-14 3E-19 151.3 8.5 126 4-142 409-549 (568)
119 PRK09628 oorB 2-oxoglutarate-a 99.5 8.5E-14 1.8E-18 133.4 12.6 111 20-142 68-201 (277)
120 PRK13012 2-oxoacid dehydrogena 99.5 1.6E-13 3.6E-18 148.3 15.8 131 15-148 198-408 (896)
121 PRK05778 2-oxoglutarate ferred 99.5 1.7E-13 3.7E-18 132.7 13.6 140 18-169 68-230 (301)
122 PRK11869 2-oxoacid ferredoxin 99.5 2.5E-13 5.4E-18 130.3 12.7 116 17-142 57-193 (280)
123 TIGR02177 PorB_KorB 2-oxoacid: 99.5 2.2E-13 4.7E-18 131.1 12.2 113 18-141 51-185 (287)
124 TIGR03297 Ppyr-DeCO2ase phosph 99.5 4.1E-13 8.9E-18 133.2 13.7 114 19-144 220-338 (361)
125 PRK11867 2-oxoglutarate ferred 99.5 3.7E-13 8E-18 129.6 11.6 113 19-141 68-201 (286)
126 PRK11866 2-oxoacid ferredoxin 99.5 6.6E-13 1.4E-17 127.3 12.7 116 16-141 55-191 (279)
127 PRK09405 aceE pyruvate dehydro 99.5 1.2E-12 2.5E-17 141.4 15.7 129 16-147 191-399 (891)
128 PF13292 DXP_synthase_N: 1-deo 99.4 6.1E-13 1.3E-17 125.3 11.9 120 18-141 109-270 (270)
129 PRK05261 putative phosphoketol 99.4 7.7E-13 1.7E-17 141.2 13.0 133 10-146 132-287 (785)
130 COG1154 Dxs Deoxyxylulose-5-ph 99.4 1.7E-12 3.7E-17 133.3 12.0 129 18-150 113-287 (627)
131 PRK11864 2-ketoisovalerate fer 99.4 5.6E-12 1.2E-16 121.8 13.4 124 13-141 62-206 (300)
132 KOG4166|consensus 99.4 8.6E-13 1.9E-17 130.3 6.2 129 3-143 507-648 (675)
133 KOG1185|consensus 99.3 9.5E-12 2.1E-16 124.6 12.2 129 4-143 414-561 (571)
134 TIGR03336 IOR_alpha indolepyru 99.3 1E-11 2.2E-16 130.8 11.7 116 17-141 400-529 (595)
135 PLN02980 2-oxoglutarate decarb 99.3 5.6E-12 1.2E-16 145.7 10.4 127 4-143 742-890 (1655)
136 PLN02225 1-deoxy-D-xylulose-5- 99.3 2.8E-11 6.1E-16 128.1 11.9 126 18-145 187-367 (701)
137 PF00676 E1_dh: Dehydrogenase 99.3 2.5E-12 5.4E-17 124.7 3.2 102 159-276 5-118 (300)
138 TIGR03181 PDH_E1_alph_x pyruva 99.2 3.6E-12 7.8E-17 125.7 3.3 102 155-275 29-138 (341)
139 COG3960 Glyoxylate carboligase 99.2 1.8E-11 4E-16 118.1 6.7 152 3-166 402-576 (592)
140 KOG1182|consensus 99.0 1.1E-10 2.4E-15 111.5 2.9 90 172-273 116-207 (432)
141 PRK11865 pyruvate ferredoxin o 99.0 9.9E-09 2.1E-13 99.4 16.2 123 13-141 62-210 (299)
142 COG3962 Acetolactate synthase 99.0 1.1E-09 2.4E-14 109.5 9.0 131 1-143 425-576 (617)
143 COG3961 Pyruvate decarboxylase 98.9 5.7E-09 1.2E-13 106.0 9.0 117 16-143 407-536 (557)
144 KOG1184|consensus 98.4 1.3E-06 2.7E-11 88.9 10.8 117 16-142 411-539 (561)
145 cd02016 TPP_E1_OGDC_like Thiam 98.2 1.6E-06 3.5E-11 82.7 4.0 92 171-275 13-129 (265)
146 COG1013 PorB Pyruvate:ferredox 98.1 3.6E-05 7.8E-10 74.7 12.8 115 17-141 67-203 (294)
147 PF09364 XFP_N: XFP N-terminal 98.0 1.3E-05 2.9E-10 78.8 7.8 98 19-126 139-249 (379)
148 PRK09404 sucA 2-oxoglutarate d 98.0 5.6E-06 1.2E-10 91.0 5.5 113 158-275 199-330 (924)
149 COG2609 AceE Pyruvate dehydrog 97.9 0.00013 2.8E-09 76.9 13.5 63 19-81 191-261 (887)
150 COG4231 Indolepyruvate ferredo 97.5 0.00038 8.2E-09 72.9 9.1 113 17-140 425-552 (640)
151 cd03377 TPP_PFOR_PNO Thiamine 97.3 0.0019 4.1E-08 64.3 10.3 93 43-141 152-266 (365)
152 PRK12315 1-deoxy-D-xylulose-5- 96.8 0.00094 2E-08 70.7 4.1 83 172-274 41-128 (581)
153 COG1165 MenD 2-succinyl-6-hydr 96.8 0.0024 5.2E-08 66.2 6.7 110 22-144 424-548 (566)
154 COG3957 Phosphoketolase [Carbo 96.6 0.0054 1.2E-07 65.1 7.4 100 11-118 144-254 (793)
155 cd06586 TPP_enzyme_PYR Pyrimid 96.5 0.033 7.2E-07 47.6 10.6 105 26-140 48-153 (154)
156 PRK09193 indolepyruvate ferred 96.3 0.022 4.8E-07 64.4 10.7 118 17-140 478-615 (1165)
157 PRK13030 2-oxoacid ferredoxin 96.3 0.021 4.4E-07 64.8 10.2 113 18-140 466-601 (1159)
158 PRK13029 2-oxoacid ferredoxin 96.0 0.032 7E-07 63.1 9.9 117 17-140 492-629 (1186)
159 cd07035 TPP_PYR_POX_like Pyrim 95.6 0.15 3.2E-06 44.0 10.6 103 26-140 47-154 (155)
160 TIGR03845 sulfopyru_alph sulfo 95.5 0.28 6.1E-06 43.3 12.1 105 23-140 44-153 (157)
161 cd07034 TPP_PYR_PFOR_IOR-alpha 95.4 0.28 6.1E-06 42.6 11.5 88 44-139 67-158 (160)
162 TIGR02176 pyruv_ox_red pyruvat 95.3 0.077 1.7E-06 60.6 9.7 94 43-142 952-1067(1165)
163 cd07039 TPP_PYR_POX Pyrimidine 95.3 0.23 4.9E-06 44.0 10.7 104 28-141 53-158 (164)
164 PF02776 TPP_enzyme_N: Thiamin 94.4 0.24 5.2E-06 43.8 8.6 106 26-142 52-162 (172)
165 cd07038 TPP_PYR_PDC_IPDC_like 94.0 0.82 1.8E-05 40.3 11.2 92 44-140 60-161 (162)
166 PRK08659 2-oxoglutarate ferred 93.9 0.53 1.1E-05 47.4 10.8 116 24-150 59-178 (376)
167 TIGR00239 2oxo_dh_E1 2-oxoglut 93.9 0.11 2.3E-06 57.9 6.2 73 191-275 241-331 (929)
168 PRK07119 2-ketoisovalerate fer 93.6 0.59 1.3E-05 46.6 10.5 114 24-149 59-177 (352)
169 PRK11864 2-ketoisovalerate fer 93.0 0.09 1.9E-06 51.3 3.5 63 199-273 14-83 (300)
170 cd07037 TPP_PYR_MenD Pyrimidin 92.6 0.95 2.1E-05 40.1 9.2 101 28-140 50-161 (162)
171 TIGR03297 Ppyr-DeCO2ase phosph 91.5 0.88 1.9E-05 45.6 8.6 113 22-142 35-153 (361)
172 PRK08611 pyruvate oxidase; Pro 91.1 1.9 4.1E-05 45.7 11.1 105 28-142 58-164 (576)
173 cd07033 TPP_PYR_DXS_TK_like Py 90.9 2.5 5.5E-05 36.8 10.0 100 27-139 53-154 (156)
174 TIGR03710 OAFO_sf 2-oxoacid:ac 90.4 1.5 3.2E-05 46.5 9.4 114 25-149 249-366 (562)
175 PF01855 POR_N: Pyruvate flavo 90.3 0.82 1.8E-05 42.9 6.7 110 25-149 48-161 (230)
176 PRK06457 pyruvate dehydrogenas 90.3 2.8 6.1E-05 44.0 11.4 105 28-142 54-160 (549)
177 COG0028 IlvB Thiamine pyrophos 90.2 1.8 3.8E-05 45.8 9.8 105 28-142 54-161 (550)
178 PRK09627 oorA 2-oxoglutarate-a 90.2 1.9 4.1E-05 43.5 9.6 114 25-150 59-177 (375)
179 TIGR03254 oxalate_oxc oxalyl-C 89.9 2.7 5.9E-05 44.1 11.0 95 43-142 67-164 (554)
180 PRK08366 vorA 2-ketoisovalerat 89.9 3 6.5E-05 42.3 10.8 112 25-149 61-173 (390)
181 PRK07064 hypothetical protein; 89.2 3.1 6.6E-05 43.5 10.6 107 28-142 56-166 (544)
182 TIGR03457 sulphoacet_xsc sulfo 88.9 3.8 8.2E-05 43.3 11.2 91 44-142 67-160 (579)
183 PRK09259 putative oxalyl-CoA d 88.8 4.3 9.4E-05 42.8 11.5 94 44-142 75-171 (569)
184 PRK07524 hypothetical protein; 88.6 3.4 7.5E-05 43.1 10.5 94 44-142 67-164 (535)
185 PRK07525 sulfoacetaldehyde ace 88.5 4 8.7E-05 43.2 11.1 105 28-142 58-164 (588)
186 PRK06112 acetolactate synthase 88.4 5.3 0.00011 42.2 11.9 105 28-142 64-171 (578)
187 PRK07586 hypothetical protein; 88.4 4 8.7E-05 42.3 10.8 105 28-142 54-161 (514)
188 PRK12474 hypothetical protein; 88.1 4.2 9.2E-05 42.3 10.8 105 28-142 58-165 (518)
189 PRK06456 acetolactate synthase 88.1 3.9 8.5E-05 43.1 10.7 103 28-142 58-165 (572)
190 PRK06466 acetolactate synthase 88.1 4.3 9.4E-05 42.9 10.9 105 28-142 57-164 (574)
191 TIGR01504 glyox_carbo_lig glyo 87.9 5.7 0.00012 42.2 11.7 94 42-142 66-164 (588)
192 TIGR03394 indol_phenyl_DC indo 87.6 3.5 7.7E-05 43.2 9.9 106 29-142 54-165 (535)
193 PRK07979 acetolactate synthase 87.4 4.1 8.9E-05 43.0 10.3 105 28-142 57-164 (574)
194 PF02779 Transket_pyr: Transke 87.2 6.1 0.00013 35.1 9.9 106 26-140 61-171 (178)
195 PRK07418 acetolactate synthase 87.0 5.3 0.00011 42.6 10.9 91 44-142 88-182 (616)
196 PRK08155 acetolactate synthase 87.0 5.4 0.00012 42.0 10.9 103 28-142 66-173 (564)
197 PRK06725 acetolactate synthase 86.8 5.6 0.00012 42.1 10.9 105 28-142 67-174 (570)
198 PRK09622 porA pyruvate flavodo 86.8 3.8 8.3E-05 41.7 9.3 112 24-148 67-181 (407)
199 PRK08199 thiamine pyrophosphat 86.8 4.5 9.7E-05 42.5 10.1 105 28-142 61-168 (557)
200 PRK08978 acetolactate synthase 86.8 5.2 0.00011 41.9 10.6 105 28-142 53-160 (548)
201 PRK07789 acetolactate synthase 86.6 6.5 0.00014 41.9 11.3 105 28-142 84-191 (612)
202 PRK08322 acetolactate synthase 86.5 5.4 0.00012 41.7 10.5 105 28-142 53-160 (547)
203 PLN02470 acetolactate synthase 86.4 5.7 0.00012 42.1 10.7 105 28-142 66-173 (585)
204 PRK07710 acetolactate synthase 86.3 5.8 0.00013 41.9 10.7 106 27-142 67-175 (571)
205 PRK09124 pyruvate dehydrogenas 85.6 7.3 0.00016 41.1 11.0 103 28-142 56-162 (574)
206 PRK11269 glyoxylate carboligas 85.4 7.3 0.00016 41.3 11.0 91 45-142 72-165 (591)
207 PRK08266 hypothetical protein; 85.1 6.7 0.00014 41.0 10.4 106 28-142 58-168 (542)
208 TIGR02720 pyruv_oxi_spxB pyruv 85.0 7.7 0.00017 41.1 10.9 92 43-142 65-159 (575)
209 PTZ00089 transketolase; Provis 84.9 5.8 0.00013 42.9 10.0 92 42-140 428-520 (661)
210 COG0674 PorA Pyruvate:ferredox 84.8 6.3 0.00014 39.6 9.6 108 23-142 57-166 (365)
211 PRK06276 acetolactate synthase 84.3 7.4 0.00016 41.2 10.4 106 27-142 52-160 (586)
212 PRK08617 acetolactate synthase 84.3 7.4 0.00016 40.8 10.3 94 42-142 66-164 (552)
213 PRK06882 acetolactate synthase 84.1 8 0.00017 40.8 10.5 92 44-142 70-164 (574)
214 PRK09107 acetolactate synthase 84.1 6.6 0.00014 41.8 9.9 105 28-142 64-171 (595)
215 PRK08979 acetolactate synthase 84.0 8.8 0.00019 40.6 10.8 105 28-142 57-164 (572)
216 TIGR02418 acolac_catab acetola 83.8 9.3 0.0002 39.9 10.8 93 43-142 63-158 (539)
217 PRK07092 benzoylformate decarb 83.6 10 0.00022 39.5 11.0 106 28-142 63-171 (530)
218 PRK08273 thiamine pyrophosphat 83.4 5.4 0.00012 42.4 8.9 105 28-142 57-164 (597)
219 TIGR00118 acolac_lg acetolacta 83.4 9.8 0.00021 40.0 10.8 105 28-142 54-161 (558)
220 TIGR00232 tktlase_bact transke 82.7 8.5 0.00018 41.6 10.1 77 58-139 434-512 (653)
221 TIGR00204 dxs 1-deoxy-D-xylulo 82.6 9.1 0.0002 41.1 10.3 101 27-139 366-467 (617)
222 PRK06048 acetolactate synthase 82.5 12 0.00025 39.5 10.9 105 28-142 60-167 (561)
223 PRK07282 acetolactate synthase 82.2 12 0.00025 39.6 10.8 104 28-142 63-170 (566)
224 PRK08367 porA pyruvate ferredo 81.9 14 0.0003 37.6 10.7 113 24-149 61-176 (394)
225 PRK05858 hypothetical protein; 81.5 11 0.00025 39.4 10.4 103 28-142 57-164 (542)
226 PRK06965 acetolactate synthase 80.1 15 0.00033 38.9 10.8 105 28-142 74-181 (587)
227 PRK06154 hypothetical protein; 79.8 18 0.00038 38.3 11.2 91 43-142 81-176 (565)
228 PRK08327 acetolactate synthase 79.4 9.8 0.00021 40.2 9.1 94 44-142 78-181 (569)
229 PRK08527 acetolactate synthase 79.4 16 0.00034 38.6 10.6 93 43-142 68-163 (563)
230 PLN02582 1-deoxy-D-xylulose-5- 79.2 12 0.00027 40.6 9.8 92 41-139 421-513 (677)
231 PRK06546 pyruvate dehydrogenas 79.0 23 0.00051 37.5 11.8 94 42-142 65-162 (578)
232 TIGR03336 IOR_alpha indolepyru 78.8 12 0.00025 40.0 9.5 109 25-149 58-169 (595)
233 CHL00099 ilvB acetohydroxyacid 78.6 18 0.00039 38.4 10.8 91 44-142 79-173 (585)
234 PLN02790 transketolase 78.6 14 0.0003 40.0 10.1 91 42-139 418-509 (654)
235 PLN02573 pyruvate decarboxylas 78.1 18 0.00038 38.4 10.6 106 28-142 69-182 (578)
236 PRK05444 1-deoxy-D-xylulose-5- 77.4 15 0.00034 38.9 9.9 98 28-139 336-436 (580)
237 PRK12753 transketolase; Review 77.0 16 0.00034 39.7 9.9 89 43-139 428-518 (663)
238 PRK12571 1-deoxy-D-xylulose-5- 76.5 17 0.00037 39.2 10.0 101 27-140 375-477 (641)
239 TIGR00173 menD 2-succinyl-5-en 75.4 7.4 0.00016 39.6 6.7 107 28-142 53-166 (432)
240 COG3958 Transketolase, C-termi 75.2 16 0.00034 35.8 8.3 102 26-139 62-165 (312)
241 PRK11892 pyruvate dehydrogenas 75.1 24 0.00051 36.7 10.2 98 26-138 202-309 (464)
242 cd07036 TPP_PYR_E1-PDHc-beta_l 74.6 27 0.00059 31.0 9.3 61 70-138 103-164 (167)
243 PLN02234 1-deoxy-D-xylulose-5- 74.5 20 0.00043 38.8 9.8 98 28-137 414-512 (641)
244 COG4032 Predicted thiamine-pyr 74.1 10 0.00022 33.3 6.1 106 24-140 53-162 (172)
245 cd01460 vWA_midasin VWA_Midasi 73.3 62 0.0014 31.1 12.0 83 44-127 166-258 (266)
246 PLN02225 1-deoxy-D-xylulose-5- 73.1 24 0.00052 38.6 10.0 92 41-139 446-538 (701)
247 COG0021 TktA Transketolase [Ca 72.4 13 0.00028 40.0 7.5 77 59-140 441-519 (663)
248 PRK12754 transketolase; Review 71.3 25 0.00054 38.2 9.7 89 43-139 428-518 (663)
249 PRK05899 transketolase; Review 70.8 30 0.00064 37.1 10.1 102 27-139 381-483 (624)
250 PLN02683 pyruvate dehydrogenas 69.6 45 0.00099 33.3 10.5 98 26-138 87-194 (356)
251 PLN02980 2-oxoglutarate decarb 67.6 18 0.00039 43.4 8.3 104 28-141 354-466 (1655)
252 cd02011 TPP_PK Thiamine pyroph 65.7 7.8 0.00017 36.5 3.9 68 179-271 4-74 (227)
253 TIGR03393 indolpyr_decarb indo 56.3 97 0.0021 32.4 10.6 106 27-142 53-166 (539)
254 PF11069 DUF2870: Protein of u 55.2 26 0.00056 28.7 4.7 41 290-330 32-77 (98)
255 smart00861 Transket_pyr Transk 50.8 1.5E+02 0.0032 25.7 9.3 98 28-139 64-164 (168)
256 KOG4166|consensus 50.4 56 0.0012 33.8 7.2 105 28-141 144-250 (675)
257 TIGR02176 pyruv_ox_red pyruvat 49.0 1.2E+02 0.0026 35.3 10.6 112 25-148 63-175 (1165)
258 PTZ00182 3-methyl-2-oxobutanat 46.3 1E+02 0.0022 30.8 8.4 32 103-138 170-202 (355)
259 PF01380 SIS: SIS domain SIS d 40.5 95 0.0021 25.0 6.2 37 41-79 53-89 (131)
260 COG1303 Uncharacterized protei 40.1 61 0.0013 29.0 5.0 43 96-141 24-66 (179)
261 PRK07449 2-succinyl-5-enolpyru 40.0 86 0.0019 33.0 7.2 46 28-79 62-107 (568)
262 COG0777 AccD Acetyl-CoA carbox 34.3 98 0.0021 30.1 5.8 64 19-83 131-208 (294)
263 cd05014 SIS_Kpsf KpsF-like pro 32.3 2E+02 0.0044 23.2 6.9 21 59-79 63-83 (128)
264 PRK09212 pyruvate dehydrogenas 31.8 3.1E+02 0.0067 27.0 9.2 34 103-140 139-173 (327)
265 KOG1184|consensus 31.7 1E+02 0.0022 32.6 5.7 96 42-142 67-170 (561)
266 KOG0369|consensus 31.0 1.1E+02 0.0024 33.6 6.0 59 59-139 173-233 (1176)
267 CHL00144 odpB pyruvate dehydro 30.7 3.8E+02 0.0083 26.3 9.6 32 103-138 139-171 (327)
268 PF06657 Cep57_MT_bd: Centroso 30.4 38 0.00082 26.5 2.0 27 306-334 52-78 (79)
269 COG1154 Dxs Deoxyxylulose-5-ph 27.8 3.6E+02 0.0078 29.2 9.1 104 23-139 366-473 (627)
270 PF07540 NOC3p: Nucleolar comp 27.5 95 0.002 25.2 3.9 38 286-332 57-94 (95)
271 COG0299 PurN Folate-dependent 26.8 2E+02 0.0044 26.5 6.3 79 43-141 2-87 (200)
272 TIGR00315 cdhB CO dehydrogenas 26.3 1.3E+02 0.0029 26.7 5.0 37 43-79 28-64 (162)
273 PF05014 Nuc_deoxyrib_tr: Nucl 25.8 1.3E+02 0.0028 24.3 4.6 39 43-82 63-101 (113)
274 cd05710 SIS_1 A subgroup of th 23.8 1.7E+02 0.0038 23.9 5.0 38 41-80 47-84 (120)
275 PRK10886 DnaA initiator-associ 23.3 2.9E+02 0.0063 25.2 6.8 31 23-53 48-84 (196)
276 COG3960 Glyoxylate carboligase 23.2 1.5E+02 0.0032 29.9 5.0 98 40-142 65-165 (592)
277 COG3453 Uncharacterized protei 22.2 3.3E+02 0.0071 23.4 6.2 47 91-141 41-96 (130)
278 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.2 2E+02 0.0042 23.2 5.0 34 43-78 48-81 (126)
279 PF13899 Thioredoxin_7: Thiore 22.0 65 0.0014 24.4 1.9 20 121-140 6-25 (82)
280 cd04918 ACT_AK1-AT_2 ACT domai 21.8 2.3E+02 0.0049 20.5 4.8 35 44-78 2-36 (65)
281 PRK00414 gmhA phosphoheptose i 21.0 2.7E+02 0.0059 25.0 6.1 37 41-79 111-147 (192)
282 PF00205 TPP_enzyme_M: Thiamin 20.8 69 0.0015 26.7 2.0 33 43-75 12-44 (137)
283 cd05017 SIS_PGI_PMI_1 The memb 20.8 1.9E+02 0.0042 23.5 4.7 8 103-110 70-77 (119)
284 PLN02331 phosphoribosylglycina 20.7 3.8E+02 0.0082 24.7 7.0 51 44-111 2-57 (207)
285 PRK13938 phosphoheptose isomer 20.4 2.7E+02 0.0058 25.4 5.9 41 39-81 111-151 (196)
286 PF11502 BCL9: B-cell lymphoma 20.2 1.9E+02 0.0041 19.8 3.6 23 304-326 2-24 (40)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=5.8e-42 Score=334.01 Aligned_cols=182 Identities=44% Similarity=0.741 Sum_probs=167.7
Q ss_pred CCCccccCCcccccchHHHHHHHHHHHhcCCC-CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc
Q psy14560 11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE 89 (355)
Q Consensus 11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~-~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~ 89 (355)
...++++.++++|.++|.|+|+|+|.|+++.+ .+++|++|||++++|.|||+||+|+.|+|||||||+||+|+||++..
T Consensus 127 ~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~ 206 (358)
T COG1071 127 KEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRS 206 (358)
T ss_pred cccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchh
Confidence 36788999999999999999999999999954 49999999999999999999999999999999999999999998777
Q ss_pred ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----------
Q psy14560 90 RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR---------- 157 (355)
Q Consensus 90 ~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR---------- 157 (355)
.+...+.++.+ |+|+|+++|||+|+.+|++++++|+++||+++||+|||+.|||+.+||++||+..||
T Consensus 207 ~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~ 286 (358)
T COG1071 207 RQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK 286 (358)
T ss_pred hcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc
Confidence 66655666656 479999999999999999999999999999999999999999999999999988898
Q ss_pred -cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcc
Q psy14560 158 -DPITSFKEKMLNSELATVDELKEACAVGMRAVMRE 192 (355)
Q Consensus 158 -DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~ 192 (355)
|||.+++++|++.|++++++++++.++....+.++
T Consensus 287 ~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea 322 (358)
T COG1071 287 RDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEA 322 (358)
T ss_pred cChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887766653
No 2
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=1.3e-39 Score=314.83 Aligned_cols=183 Identities=46% Similarity=0.722 Sum_probs=164.7
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS 91 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~ 91 (355)
..++++.++++|.++|+|+|.|+|.|+.+.+.+++|++|||++++|.|||+||+|+.|+|||||||+||+|+++|+...+
T Consensus 93 ~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~ 172 (300)
T PF00676_consen 93 GLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQ 172 (300)
T ss_dssp TTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHH
T ss_pred cceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCcccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------------
Q psy14560 92 SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------------ 157 (355)
Q Consensus 92 ~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------------ 157 (355)
.+.++++++ ++|+|+++|||+|+++|++++++|++++|++++|+|||+.|+|+.||+++|++..||
T Consensus 173 ~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~ 252 (300)
T PF00676_consen 173 TASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKR 252 (300)
T ss_dssp CSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT
T ss_pred ccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcC
Confidence 888888886 479999999999999999999999999999999999999999999999999888887
Q ss_pred cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcccc
Q psy14560 158 DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQD 194 (355)
Q Consensus 158 DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D 194 (355)
|||.+|+++|++.|++++++++++.++....+.++-+
T Consensus 253 DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~ 289 (300)
T PF00676_consen 253 DPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVE 289 (300)
T ss_dssp -HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888766655433
No 3
>KOG0225|consensus
Probab=100.00 E-value=3.4e-39 Score=306.27 Aligned_cols=212 Identities=58% Similarity=0.956 Sum_probs=187.7
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG 83 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~ 83 (355)
.||++.+ +|+|++|++|.++|.+.|+|+|.|+++.+.+++++.|||+.+||.++|++|+|+.|+||+||||+||.||
T Consensus 152 SMHmy~k---~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yG 228 (394)
T KOG0225|consen 152 SMHMYAK---NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYG 228 (394)
T ss_pred ceeeecc---cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCc
Confidence 3667666 4999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccCCCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------
Q psy14560 84 MGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------ 157 (355)
Q Consensus 84 ~~~~~~~~~~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------ 157 (355)
|.|+..+....++|.+++.-+|+++|||.|+++|++|.+.|.+++++++||.|+|+.|||+.|||++||.+.||
T Consensus 229 MGTs~~Rasa~teyykRG~yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq 308 (394)
T KOG0225|consen 229 MGTSAERASASTEYYKRGDYIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQ 308 (394)
T ss_pred cCcchhhhhcChHHHhccCCCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHH
Confidence 99999988888999999866999999999999999999999999999999999999999999999999999898
Q ss_pred ------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccC
Q psy14560 158 ------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGC 227 (355)
Q Consensus 158 ------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~ 227 (355)
|||..++++|++.++.+++|++++..+...++.++.+. ..+- .--++.+++..++-+..+.
T Consensus 309 ~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~-A~~~--------p~p~~~eL~~dvy~~~~~~ 375 (394)
T KOG0225|consen 309 EVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAF-ATAS--------PEPEPSELFTDVYVKGTGF 375 (394)
T ss_pred HHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHH-hhcC--------CCCCHHHHHHHhhccCCCc
Confidence 99999999999999999999999988887777665443 1111 1123455666666655553
No 4
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=1.4e-37 Score=307.00 Aligned_cols=191 Identities=57% Similarity=0.941 Sum_probs=175.6
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY 82 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~ 82 (355)
..+|+..+ ..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||++++|.|||+||+|+.|+||+||||+||+|
T Consensus 122 gsmH~~~~-~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~ 200 (362)
T PLN02269 122 GSMHFYKK-DANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHY 200 (362)
T ss_pred Ccccccch-hcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCE
Confidence 34565554 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccCCCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----
Q psy14560 83 GMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----- 157 (355)
Q Consensus 83 ~~~~~~~~~~~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----- 157 (355)
+++++...+...++++++++++|+++|||+|+++|++++++|++++|+ ++|+|||+.|+|+.||+++|++..||
T Consensus 201 aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~ 279 (362)
T PLN02269 201 GMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEI 279 (362)
T ss_pred eccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHH
Confidence 999988777777889888899999999999999999999999999999 99999999999999999999876686
Q ss_pred -------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560 158 -------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS 195 (355)
Q Consensus 158 -------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~ 195 (355)
|||.+|+++|++.|++++++++++.++....+.++-++
T Consensus 280 ~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~ 324 (362)
T PLN02269 280 SGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAK 324 (362)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988887776665444
No 5
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1e-36 Score=296.48 Aligned_cols=188 Identities=55% Similarity=0.892 Sum_probs=172.0
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG 83 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~ 83 (355)
.+|+..+ ..++.+.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|++++||+||||+||+|+
T Consensus 95 ~~h~~~~-~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg 173 (315)
T TIGR03182 95 SMHMFDR-EKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA 173 (315)
T ss_pred CCCcCch-hhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc
Confidence 4555444 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----
Q psy14560 84 MGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR---- 157 (355)
Q Consensus 84 ~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR---- 157 (355)
++++...+...++++++| +|+++++|||+|+++|++++++|+++++++++|+|||+.|+|+.||+++|++. ||
T Consensus 174 ~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~-Yr~~~e 252 (315)
T TIGR03182 174 MGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAK-YRSKEE 252 (315)
T ss_pred ccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccc-cCCHHH
Confidence 998877666678999874 79999999999999999999999999999999999999999999999999874 87
Q ss_pred -------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccc
Q psy14560 158 -------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQ 193 (355)
Q Consensus 158 -------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~ 193 (355)
|||.+|+++|+++|++++++++++.++....+.+.-
T Consensus 253 ~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~ 295 (315)
T TIGR03182 253 VEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAV 295 (315)
T ss_pred HHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888766665543
No 6
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=2e-36 Score=297.16 Aligned_cols=191 Identities=39% Similarity=0.683 Sum_probs=171.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcC-------CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEE
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKG-------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIY 75 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~-------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~ 75 (355)
..+|+..+ ..++.+++|+||+++|.|+|+|+|.|+.+ ++++|||++|||++++|.+||+||+|++++||+||
T Consensus 112 gs~H~~~~-~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvif 190 (341)
T CHL00149 112 GSMHIFSA-PHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIF 190 (341)
T ss_pred CCccccch-hcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEE
Confidence 34555554 46777899999999999999999998876 68999999999999999999999999999999999
Q ss_pred EEEeCCCcceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCC
Q psy14560 76 VCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPG 153 (355)
Q Consensus 76 Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~ 153 (355)
||+||+|+++++...+...++++++| +|+++++|||+|+.+|++++++|++++|++++|+|||+.|+|+.||+.+|++
T Consensus 191 vv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~ 270 (341)
T CHL00149 191 VVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPD 270 (341)
T ss_pred EEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCc
Confidence 99999999998876666678899874 7999999999999999999999999999999999999999999999999887
Q ss_pred ccee-----------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560 154 TSFR-----------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS 195 (355)
Q Consensus 154 ~~YR-----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~ 195 (355)
. || |||.+|+++|+++|++++++++++.++....+.+..++
T Consensus 271 ~-YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~ 322 (341)
T CHL00149 271 E-LRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQF 322 (341)
T ss_pred c-CCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 88 99999999999999999999998888876666554443
No 7
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=3.4e-36 Score=289.98 Aligned_cols=187 Identities=47% Similarity=0.757 Sum_probs=171.7
Q ss_pred ccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcc
Q psy14560 5 MIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGM 84 (355)
Q Consensus 5 ~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~ 84 (355)
+|+..+ ..++.+++|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+|++|++++||+||||+||+|++
T Consensus 90 ~h~~~~-~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i 168 (293)
T cd02000 90 MHIGDK-EKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAI 168 (293)
T ss_pred CCCCch-hcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeec
Confidence 454444 6889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----
Q psy14560 85 GTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----- 157 (355)
Q Consensus 85 ~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----- 157 (355)
+++.....+.++++++| +|+++++|||+|++++++++++|+++++++++|+|||+.|+|..||+++|++..||
T Consensus 169 ~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~ 248 (293)
T cd02000 169 STPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEV 248 (293)
T ss_pred cCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHH
Confidence 98876666678898874 69999999999999999999999999999999999999999999999877777787
Q ss_pred ------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcc
Q psy14560 158 ------DPITSFKEKMLNSELATVDELKEACAVGMRAVMRE 192 (355)
Q Consensus 158 ------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~ 192 (355)
|||.+|+++|++.|++++++++++.++....+.+.
T Consensus 249 ~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a 289 (293)
T cd02000 249 EEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEA 289 (293)
T ss_pred HHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887776654
No 8
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=9.4e-36 Score=299.51 Aligned_cols=190 Identities=38% Similarity=0.684 Sum_probs=171.6
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcC-------CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEE
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKG-------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYV 76 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~-------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~V 76 (355)
.+|+..+ +.++++.+++||.++|.|+|+|+|.|+++ ++++|||++|||++++|.|||+||+|+.|+||+|||
T Consensus 179 smH~~~~-~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfV 257 (433)
T PLN02374 179 SMHMFSK-EHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV 257 (433)
T ss_pred cCccCch-hhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEE
Confidence 4566544 67889999999999999999999999875 589999999999999999999999999999999999
Q ss_pred EEeCCCcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc
Q psy14560 77 CENNGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT 154 (355)
Q Consensus 77 v~NN~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~ 154 (355)
|+||+|+++++...+...++++++ ++|+++++|||+|+++|++++++|++++|++++|+|||+.|+|+.||+.+|++.
T Consensus 258 V~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~ 337 (433)
T PLN02374 258 VENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE 337 (433)
T ss_pred EeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccc
Confidence 999999998877766667889887 479999999999999999999999999999999999999999999999999875
Q ss_pred cee-----------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560 155 SFR-----------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS 195 (355)
Q Consensus 155 ~YR-----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~ 195 (355)
|| |||.+|+++|+++|++++++++++.++....+.++.++
T Consensus 338 -YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~ 388 (433)
T PLN02374 338 -LRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEF 388 (433)
T ss_pred -cCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 87 99999999999999999999999888887766654443
No 9
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.1e-35 Score=291.97 Aligned_cols=186 Identities=30% Similarity=0.483 Sum_probs=171.1
Q ss_pred CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc
Q psy14560 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE 89 (355)
Q Consensus 10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~ 89 (355)
+...++++.+++||+++|.|+|+|+|.|+.+++++|||++|||++++|.++|+|++|++++||+||||+||+|+++++..
T Consensus 112 ~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~ 191 (341)
T TIGR03181 112 PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRS 191 (341)
T ss_pred chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----------
Q psy14560 90 RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR---------- 157 (355)
Q Consensus 90 ~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR---------- 157 (355)
.....+|++++| +|+++++|||+|+.+|++++++|++++++.++|+|||+.|+|+.||+.+|++..||
T Consensus 192 ~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~ 271 (341)
T TIGR03181 192 KQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRK 271 (341)
T ss_pred hhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHhc
Confidence 666678998874 79999999999999999999999999999999999999999999999999877787
Q ss_pred -cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560 158 -DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS 195 (355)
Q Consensus 158 -DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~ 195 (355)
|||.+|+++|++.|++++++++++.++....+.++.++
T Consensus 272 ~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 272 KDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888876666654444
No 10
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=5e-33 Score=299.52 Aligned_cols=218 Identities=24% Similarity=0.275 Sum_probs=183.0
Q ss_pred CCcccccchHHHHHHHHHHHhcCCC------CeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEeCCCcceee
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTG------GVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCENNGYGMGTS 87 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~------~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~~~~~ 87 (355)
..+++|...|+|+|+|+|.|+.+.+ .++|+++||||+ ++|.|+|+||+|+.|++| +||||+||+|+++|+
T Consensus 312 npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~ 391 (924)
T PRK09404 312 NPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTS 391 (924)
T ss_pred CccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeC
Confidence 3588999999999999999998877 799999999997 899999999999999998 999999999999999
Q ss_pred ccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee--------
Q psy14560 88 AERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-------- 157 (355)
Q Consensus 88 ~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-------- 157 (355)
.....+..+++++| +|+|+++|||+|+++|++|++.|++++|+++||+|||+.|||+.||+++|++. ||
T Consensus 392 ~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~ 470 (924)
T PRK09404 392 PPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKI 470 (924)
T ss_pred HHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHH
Confidence 87776666777765 69999999999999999999999999999999999999999999999999875 54
Q ss_pred ----cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc---------cccccccccc-----------cc----------
Q psy14560 158 ----DPITSFKEKMLNSELATVDELKEACAVGMRAVMR---------EQDSIISAYR-----------VH---------- 203 (355)
Q Consensus 158 ----DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~---------~~D~v~~~yR-----------~~---------- 203 (355)
||+.+|+++|++.|++++++++++.++....+.+ +.++.-..|- +-
T Consensus 471 ~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~ 550 (924)
T PRK09404 471 KKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKEL 550 (924)
T ss_pred HhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccccCCCCCHHHHHHH
Confidence 8999999999999999999998777665443322 1122111110 00
Q ss_pred ---cceeecCCCHHHHHHHHhcccccCCCCCCCCCc
Q psy14560 204 ---GWTYLMGVSVFGVLSELTGRRTGCAKGKGPISW 236 (355)
Q Consensus 204 ---~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w 236 (355)
-..++.++.+++.+.+++.++..+..++.++||
T Consensus 551 ~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw 586 (924)
T PRK09404 551 AEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDW 586 (924)
T ss_pred HHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCH
Confidence 023467888888999988888777667778999
No 11
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.4e-32 Score=295.14 Aligned_cols=225 Identities=21% Similarity=0.235 Sum_probs=184.5
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcCC------CCeEEEEeCcccc-cccHHHHHHHHHHHcCCCE---EEEEEeCC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGT------GGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPC---IYVCENNG 81 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~------~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPv---i~Vv~NN~ 81 (355)
...+.++.++++...|+|+|.|+|.|+++. +.++||++|||++ ++|.|+|+||+|+.+++|+ ||||+||+
T Consensus 307 ~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNq 386 (929)
T TIGR00239 307 HLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQ 386 (929)
T ss_pred eeeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC
Confidence 445677889999999999999999998765 5789999999996 8999999999999999996 99999999
Q ss_pred CcceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee--
Q psy14560 82 YGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-- 157 (355)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-- 157 (355)
|+++|+.....+.+.++++| +|+|+++|||+|+++|++++++|++++|++++|+|||+.|||+.||+++|++..||
T Consensus 387 yg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~ 466 (929)
T TIGR00239 387 IGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPL 466 (929)
T ss_pred EEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHH
Confidence 99999876666666777765 69999999999999999999999999999999999999999999999999887666
Q ss_pred ---------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccccc------------ccccccc------------
Q psy14560 158 ---------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSII------------SAYRVHG------------ 204 (355)
Q Consensus 158 ---------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~v~------------~~yR~~~------------ 204 (355)
||+.+|+++|++.|++++++++++.++....+.++.++.- +.+.+..
T Consensus 467 ~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~ 546 (929)
T TIGR00239 467 MYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMK 546 (929)
T ss_pred HHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHH
Confidence 7999999999999999999998877766444433222210 0111111
Q ss_pred ---------ceeecCCCHHHHHHHHhccc-ccCCCCCCCCCc
Q psy14560 205 ---------WTYLMGVSVFGVLSELTGRR-TGCAKGKGPISW 236 (355)
Q Consensus 205 ---------~~~~~g~~~~~~~~~~~g~~-~g~~~~~~~~~w 236 (355)
..++.|+.+++.+.+++..+ .....+++++||
T Consensus 547 ~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~ 588 (929)
T TIGR00239 547 RLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDW 588 (929)
T ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccH
Confidence 01256777788888887766 444455677998
No 12
>KOG1182|consensus
Probab=100.00 E-value=3.6e-33 Score=263.37 Aligned_cols=184 Identities=28% Similarity=0.443 Sum_probs=168.2
Q ss_pred cCCCCCccccCCcccccchHHHHHHHHHHHhcCCC-CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCccee
Q psy14560 8 INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGT 86 (355)
Q Consensus 8 ~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~-~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~ 86 (355)
++.+..++..-++++..++|.|+|+|.|.|+.+.+ +++||++|||+.++|.+|.+||+|+....|+||+|-||+|+|||
T Consensus 181 yGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AIST 260 (432)
T KOG1182|consen 181 YGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAIST 260 (432)
T ss_pred cCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeecc
Confidence 34567788889999999999999999999977654 99999999999999999999999999999999999999999999
Q ss_pred eccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-------
Q psy14560 87 SAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------- 157 (355)
Q Consensus 87 ~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------- 157 (355)
|...+....-++.+ |+|+..++|||+|..+||.|+++|.+.+....+|+|||+.|||..+||++|+.+.||
T Consensus 261 ptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~ 340 (432)
T KOG1182|consen 261 PTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQY 340 (432)
T ss_pred ccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhh
Confidence 99988887777666 589999999999999999999999999999999999999999999999999999998
Q ss_pred -----cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560 158 -----DPITSFKEKMLNSELATVDELKEACAVGMRAVMR 191 (355)
Q Consensus 158 -----DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~ 191 (355)
.||.+|+.++..+|+|+++.-.++.......+|+
T Consensus 341 W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~ 379 (432)
T KOG1182|consen 341 WNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLE 379 (432)
T ss_pred hhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHH
Confidence 7999999999999999998887777666555554
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.97 E-value=1.6e-31 Score=252.77 Aligned_cols=147 Identities=27% Similarity=0.310 Sum_probs=135.0
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcC-----CCCeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEeCCCc
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKG-----TGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCENNGYG 83 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~-----~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~ 83 (355)
..+.++.+++|.++|+|+|+|+|.|+++ .+.++|+++|||++ ++|.|+|+||+|+.+++| +||||+||+|+
T Consensus 106 ~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g 185 (265)
T cd02016 106 LSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG 185 (265)
T ss_pred EEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE
Confidence 4567788999999999999999999987 47899999999995 799999999999999999 99999999999
Q ss_pred ceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCcceecch
Q psy14560 84 MGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPI 160 (355)
Q Consensus 84 ~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YRDpI 160 (355)
++|+...+.+.++++++| +|+|+++|||+|+++|++++++|++++|++++|+|||+.|||+.||++.|++. |+.|+
T Consensus 186 ~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D~p~-~t~p~ 263 (265)
T cd02016 186 FTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDEPS-FTQPL 263 (265)
T ss_pred EEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcCCcc-ccCCC
Confidence 999988877777888875 69999999999999999999999999999999999999999999999999875 55543
No 14
>KOG0225|consensus
Probab=99.93 E-value=1.3e-26 Score=220.62 Aligned_cols=79 Identities=57% Similarity=0.947 Sum_probs=77.1
Q ss_pred hhccccccccceeecccceecccCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHhhhhhccccccceeccCccccccc
Q psy14560 272 SISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFL 350 (355)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~r~~~~~~~~~~~~~~~~g~~h~~~g~~~~~~ 350 (355)
.+.+|...+++++++.+|++|+||++|+.++++||||+|+|||+|++|||||++|++|||+|+||||||||+||||++|
T Consensus 24 ~~~~r~~~~~~~~~~~~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvav 102 (394)
T KOG0225|consen 24 LVNTRLVPSDVTFESSPFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAV 102 (394)
T ss_pred hhccccCcccccccccceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999999986
No 15
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.88 E-value=7.4e-22 Score=208.99 Aligned_cols=220 Identities=25% Similarity=0.262 Sum_probs=172.7
Q ss_pred ccCCcccccchHHHHHHHHHHHhcCC------CCeEEEEeCccc-ccccHHHHHHHHHHHcCCC---EEEEEEeCCCcce
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKGT------GGVCFALYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVCENNGYGMG 85 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~~------~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~~~ 85 (355)
..+.++|...-|+.-|+..|.+..-. ....|+++||++ .++|.++|+||+|..+++| +|+||.||++|++
T Consensus 615 aaNPSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGft 694 (1228)
T PRK12270 615 AANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFT 694 (1228)
T ss_pred ecCchhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccc
Confidence 34568999999999999999875321 456889999999 5999999999999999999 9999999999999
Q ss_pred eeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc-----cee-
Q psy14560 86 TSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT-----SFR- 157 (355)
Q Consensus 86 ~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~-----~YR- 157 (355)
|......+.....+. ++++|+++|||+|+++|.++.+.|+++.+++++|+|||+.|||..||++.|++. +|+
T Consensus 695 T~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~ 774 (1228)
T PRK12270 695 TAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDL 774 (1228)
T ss_pred cCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhh
Confidence 876654443333333 568999999999999999999999999999999999999999999998887666 476
Q ss_pred ----c-chhHHHHHHHHhhhhhhhhHHHHHHhhHH-------Hhhc----cccccccccc--------------------
Q psy14560 158 ----D-PITSFKEKMLNSELATVDELKEACAVGMR-------AVMR----EQDSIISAYR-------------------- 201 (355)
Q Consensus 158 ----D-pIr~fee~Li~~Gl~t~~e~qEa~qvg~~-------~al~----~~D~v~~~yR-------------------- 201 (355)
. .-+.|.+.|+.+|.++.++.+++...... ++-+ +.+. .+..+
T Consensus 775 i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~-~~~~~~~~~~~~~~~Tav~~~~l~~ 853 (1228)
T PRK12270 775 IDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEP-PESVESDQGPPAGVDTAVSAEVLER 853 (1228)
T ss_pred hhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCccccccCCCCCCCCCCHHHHHH
Confidence 2 23678889999999999988766544321 1111 1111 11111
Q ss_pred --cccceeecCCCHHHHHHHHhcccccCCCCCCCCCcc
Q psy14560 202 --VHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWE 237 (355)
Q Consensus 202 --~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~ 237 (355)
+.-..++.|+.+|+.+..++.++..+.+ ++.|||-
T Consensus 854 i~da~~~~PegFt~Hpkl~~~l~~R~~m~~-~g~iDWa 890 (1228)
T PRK12270 854 IGDAHVNLPEGFTVHPKLKPLLEKRREMAR-EGGIDWA 890 (1228)
T ss_pred HHHHhccCCCCCccChhhHHHHHHHHHHHh-cCCccHH
Confidence 1113346899999999999999988876 7889995
No 16
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.87 E-value=1.7e-21 Score=184.30 Aligned_cols=134 Identities=21% Similarity=0.238 Sum_probs=117.7
Q ss_pred ccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccccC
Q psy14560 14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAERSS 92 (355)
Q Consensus 14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~~~ 92 (355)
++..++|+||+++|.|+|+|+|.++.++++.|+|++|||++++|.+||++++|++++|| +++|+.||+|+++.+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 66667899999999999999999999999999999999999999999999999999998 88888888899877655555
Q ss_pred CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560 93 ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 93 ~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~ 150 (355)
..+++.++ ++|+++++|||+|.+++.+++++|.+. .++|++|++.|.+..|++..
T Consensus 179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~ 235 (255)
T cd02012 179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFM 235 (255)
T ss_pred CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCcc
Confidence 56788876 579999999999999999888877642 27899999999999999843
No 17
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.86 E-value=3e-21 Score=175.99 Aligned_cols=125 Identities=27% Similarity=0.307 Sum_probs=105.8
Q ss_pred ccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCC
Q psy14560 14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSA 93 (355)
Q Consensus 14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~ 93 (355)
++..++|++|.++|+|+|+|+|.|+.+++++|+|++|||++++|.+||+|++|+.+++|+++||+||+|+++++...
T Consensus 69 ~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~--- 145 (195)
T cd02007 69 YDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT--- 145 (195)
T ss_pred CceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC---
Confidence 44567899999999999999999999989999999999999999999999999999999999999999998765441
Q ss_pred CccHhhhcCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560 94 STDYYTRGDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG 146 (355)
Q Consensus 94 ~~d~~~~A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G 146 (355)
..+.. .++|+.... |||+|++++.+++++|. +.++|++|++.|.+.+|
T Consensus 146 ~~~~~-~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 146 PGNLF-EELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHH-HhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccC
Confidence 11222 257887774 99999999888877653 46799999999987665
No 18
>PRK12754 transketolase; Reviewed
Probab=99.84 E-value=3.6e-20 Score=195.69 Aligned_cols=133 Identities=21% Similarity=0.224 Sum_probs=117.3
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|++|.+++.|+|+|+|.|+.+ -+..|+|++|||++++|.+||++++|+.++|| +|+||+||
T Consensus 106 ~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N 185 (663)
T PRK12754 106 TAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDN 185 (663)
T ss_pred CCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 35777889999999999999999999875 37889999999999999999999999999999 78999999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
+++++++..... .+++.++ |+||++++ |||+|++++.+|+++|.+ ..++|++|++.|++.+|.+
T Consensus 186 ~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~ 252 (663)
T PRK12754 186 GISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSP 252 (663)
T ss_pred CCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcc
Confidence 999998887665 4788776 68999999 899999998888776653 2578999999999999876
No 19
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.84 E-value=2e-20 Score=195.72 Aligned_cols=129 Identities=24% Similarity=0.271 Sum_probs=111.2
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc------
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER------ 90 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~------ 90 (355)
...|+.|.++|+|+|+|+|.|+++.+..|||++|||++++|.+||+||+|+.+++|+|+||+||+|+++++...
T Consensus 110 ~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~ 189 (581)
T PRK12315 110 FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLK 189 (581)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999876531
Q ss_pred ---cCCCccHhh--hcCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 91 ---SSASTDYYT--RGDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 91 ---~~~~~d~~~--~A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
.....++.. .++|++++.| ||+|+.++.+++++| ++.++|++|++.|+|.+|+..
T Consensus 190 ~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~~ 250 (581)
T PRK12315 190 ELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQP 250 (581)
T ss_pred hhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCCh
Confidence 111223333 3689999998 999999998888775 456899999999999999753
No 20
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.83 E-value=5.5e-20 Score=194.69 Aligned_cols=132 Identities=21% Similarity=0.272 Sum_probs=115.3
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|++|.++|.|+|+|+|.|+.+ .+..|+|++|||++++|.+||++++|+.++|| +++||+||
T Consensus 102 ~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N 181 (653)
T TIGR00232 102 TAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSN 181 (653)
T ss_pred CCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 35777889999999999999999999763 37789999999999999999999999999999 88889999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEeeeeCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSG-KGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~R~~GHs 148 (355)
+|+++++..... ..++.++ |+||++++| ||+|+.++.+|+++| ++. ++|++|++.|++.+|.+
T Consensus 182 ~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g~G~~ 248 (653)
T TIGR00232 182 RISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIGFGSP 248 (653)
T ss_pred Ceeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeecccCc
Confidence 999998877665 4677775 689999999 999999887776655 444 48999999999999986
No 21
>PRK12753 transketolase; Reviewed
Probab=99.83 E-value=6.7e-20 Score=194.19 Aligned_cols=134 Identities=22% Similarity=0.232 Sum_probs=117.2
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|++|.+++.|+|+|+|.|+.+. +..|+|++|||++++|.+||++++|+.++|| +|+||+||
T Consensus 106 ~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N 185 (663)
T PRK12753 106 TPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHN 185 (663)
T ss_pred CCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 456777899999999999999999998642 6889999999999999999999999999998 88899999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
+++++.+..... ..++.++ ++||+++. |||+|+.++++|+++|.+ ..++|++|++.|.+.+|++.
T Consensus 186 ~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~ 253 (663)
T PRK12753 186 GISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPN 253 (663)
T ss_pred CCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCc
Confidence 999998877644 4677665 68999994 999999999999888764 25789999999999999874
No 22
>PRK05899 transketolase; Reviewed
Probab=99.83 E-value=6.9e-20 Score=193.31 Aligned_cols=140 Identities=22% Similarity=0.237 Sum_probs=118.9
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG 81 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~ 81 (355)
.++..++|+||+++|.|+|+|+|.++.+. +++|+|++|||++++|.+||+|++|+.++|| +++|++||+
T Consensus 111 ~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~ 190 (624)
T PRK05899 111 PGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNR 190 (624)
T ss_pred CCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 45666789999999999999999987766 8899999999999999999999999999999 788888999
Q ss_pred CcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560 82 YGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157 (355)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR 157 (355)
|+++.+... ...+++.++ ++|+++++|||+|++++.+++++|.+ .++|++|++.|.+.+||+..++...|+
T Consensus 191 ~~~~~~~~~-~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 191 ISIDGPTEG-WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred Ccccccccc-cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence 999876553 335788876 57999999999999999888887653 468999999999999998544433354
No 23
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.82 E-value=3.5e-20 Score=168.78 Aligned_cols=133 Identities=20% Similarity=0.134 Sum_probs=105.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++...++.|+||+++|+|+|+++| .|+++|||++|||++.+. .. +|.||+++++|+++||.||+
T Consensus 36 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~r~vv~i~GDG~f~m~-~~-eL~Ta~~~~lpvi~vV~NN~~ 109 (196)
T cd02013 36 SYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWGMS-MM-EIMTAVRHKLPVTAVVFRNRQ 109 (196)
T ss_pred HhcCcCCCCeEEcCCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCeEEEEEECch
Confidence 567788887777777889999999999999988 579999999999998774 33 48999999999999998887
Q ss_pred Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
|++..... .....+||.++ |+|+++++|+ +++++.+++++|++.++ .++|+|||+.+.+.
T Consensus 110 yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~-~~~p~liev~v~~~ 181 (196)
T cd02013 110 WGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMA-EGKTTVIEIVCDQE 181 (196)
T ss_pred hHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCC-CCCeEEEEEEeCcc
Confidence 77643211 12235789887 4799999998 58888888888876443 47899999998643
No 24
>PTZ00089 transketolase; Provisional
Probab=99.82 E-value=1.3e-19 Score=192.04 Aligned_cols=137 Identities=21% Similarity=0.224 Sum_probs=117.8
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG 81 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~ 81 (355)
.++..++|++|.+++.|+|+|+|.|+.+. +..|+|++|||++++|.+||++++|+.++|| +|+||+||+
T Consensus 109 ~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~ 188 (661)
T PTZ00089 109 PGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNK 188 (661)
T ss_pred CCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 45556789999999999999999998643 7889999999999999999999999999998 889999999
Q ss_pred CcceeeccccCCCccHhhh--cCCcceEEE-eCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCC
Q psy14560 82 YGMGTSAERSSASTDYYTR--GDYIPGIWV-DGM-DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPG 153 (355)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~ 153 (355)
++++.+..... ..++.++ ++||+++.| ||+ |+.++++|+++|.+. .++|++|++.|.+.+||..+++.
T Consensus 189 ~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~ 260 (661)
T PTZ00089 189 ITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTE 260 (661)
T ss_pred cccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCC
Confidence 99988876543 4566665 689999999 999 999999998887643 26899999999999998766543
No 25
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.81 E-value=5.7e-20 Score=167.99 Aligned_cols=134 Identities=25% Similarity=0.218 Sum_probs=106.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++.+|+.+...+++|+||+++|.|+|+++| .|+++|||++|||++++.. .+|.||++++||+++||.||+
T Consensus 40 ~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~ 113 (202)
T cd02006 40 QMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAY 113 (202)
T ss_pred HhcCcCCCCeEEccCCccchhhhhHHHHhHHhh----CCCCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCch
Confidence 567788887777777889999999999999998 4799999999999986643 349999999999999999998
Q ss_pred Ccceeeccc--------------------cCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 82 YGMGTSAER--------------------SSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 82 ~~~~~~~~~--------------------~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
|++...... ....+||++.| +|+++.+|+ +++++.+++++|++.+++.++|+|||+
T Consensus 114 yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 114 LGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 776332100 00147898874 799999997 578888888888765444688999999
Q ss_pred Eeeee
Q psy14560 140 VTYRY 144 (355)
Q Consensus 140 ~t~R~ 144 (355)
.+.+.
T Consensus 192 ~i~~~ 196 (202)
T cd02006 192 ILERV 196 (202)
T ss_pred Eeccc
Confidence 98643
No 26
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.81 E-value=1.6e-19 Score=160.64 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=101.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|++....++.|+||+++|+|+|++++ .|+++|||++|||++++. .++|++|++++||+++||.||+
T Consensus 31 ~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la----~~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~ 104 (172)
T cd02004 31 YILRPRKPRHRLDAGTFGTLGVGLGYAIAAALA----RPDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGG 104 (172)
T ss_pred HHccccCCCcEecCCCCCcccchHHHHHHHHHh----CCCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcc
Confidence 467778888877778889999999999999998 478999999999998764 3569999999999999988876
Q ss_pred Ccceeeccc-----------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSAER-----------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~~~-----------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++...... ....+||.++ |+|+++.+|+ +++++.+++++++ +.++|+|||+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i 171 (172)
T cd02004 105 WYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL----ASGKPALINVII 171 (172)
T ss_pred cccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----HcCCCEEEEEEc
Confidence 887643221 1235788886 5799999998 4777766666654 458999999975
No 27
>PLN02790 transketolase
Probab=99.81 E-value=3e-19 Score=189.16 Aligned_cols=134 Identities=23% Similarity=0.308 Sum_probs=114.7
Q ss_pred CCccccCCcccccchHHHHHHHHHHHh-----cCC-----CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQY-----KGT-----GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~-----~~~-----~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|++|.++|.|+|+|+|.|+ .++ +..|+|++|||++++|.+||++++|+.++|| +|+||+||
T Consensus 97 ~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N 176 (654)
T PLN02790 97 TPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDN 176 (654)
T ss_pred CCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 457778899999999999999999995 343 6889999999999999999999999999998 89999999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceEEEeC--CCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGIWVDG--MDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG--~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
+|+++++..... ..++.++ ++||+++.||| +|++++.+|+++|.+. .++|++|++.|++.+|.+.
T Consensus 177 ~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~ 245 (654)
T PLN02790 177 HISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPN 245 (654)
T ss_pred CccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCcc
Confidence 999998876543 4566665 68999999988 8999888887766532 6789999999999998763
No 28
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.80 E-value=3.7e-19 Score=162.44 Aligned_cols=130 Identities=23% Similarity=0.281 Sum_probs=113.0
Q ss_pred CCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeecc
Q psy14560 11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAE 89 (355)
Q Consensus 11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~ 89 (355)
...++..++|+||.++++|+|+|++.|+++.+..|++++|||.+.+|.+|||+.+|+.|+|. +|.||.-|+..++..+.
T Consensus 110 ~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~ 189 (243)
T COG3959 110 KTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETE 189 (243)
T ss_pred CCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchh
Confidence 34577788999999999999999999999999999999999999999999999999999998 89999989888877766
Q ss_pred ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 90 RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 90 ~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
...+..++.++ |+||++++|||+|.+++.+|+.++.. ..++|.+|.+.|.+
T Consensus 190 ~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~---~~~rP~~IIa~Tvk 242 (243)
T COG3959 190 EIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKGRPTVIIAKTVK 242 (243)
T ss_pred hccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc---cCCCCeEEEEeccc
Confidence 66666777775 89999999999999998887776532 13489999998863
No 29
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.79 E-value=1.1e-18 Score=182.90 Aligned_cols=134 Identities=28% Similarity=0.237 Sum_probs=112.7
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhc-CCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYK-GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER 90 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~-~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~ 90 (355)
..++..++|++|.++|.|+|+|+|.|+. +++++|+|++|||++++|.+||+|++|+.+++|+++|++||+|+++.+...
T Consensus 109 ~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~ 188 (580)
T PRK05444 109 SEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGA 188 (580)
T ss_pred CCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchh
Confidence 3567778999999999999999999988 688999999999999999999999999999999999999999998766542
Q ss_pred c---CCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 91 S---SASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 91 ~---~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
. ....++.++ ++||+++ .|||+|++++.+++++|. +.++|++|++.|.+.+|.+.
T Consensus 189 ~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~T~kg~G~~~ 249 (580)
T PRK05444 189 LSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK----DLKGPVLLHVVTKKGKGYAP 249 (580)
T ss_pred hhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEecCCcCCCh
Confidence 2 112334443 6899999 589999999888776544 45799999999999998763
No 30
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.78 E-value=1.1e-19 Score=177.93 Aligned_cols=109 Identities=39% Similarity=0.551 Sum_probs=98.3
Q ss_pred cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccc-cccccccccccceeecCCCHHHHHHHHhccc
Q psy14560 155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQ-DSIISAYRVHGWTYLMGVSVFGVLSELTGRR 224 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~-D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~ 224 (355)
+|+ ..+|+|+++++. + |++++..+||+.+++...+|+++ ||++|+||+|++.+++|+|+.++|++++|+.
T Consensus 32 ~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~ 111 (358)
T COG1071 32 LYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKA 111 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHHHHHHHhccc
Confidence 466 567999998765 2 36788999999999999999966 9999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560 225 TGCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 225 ~g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
+|+|| |||||||+++ +||+|+++|||+|+|||+..-.+.
T Consensus 112 ~g~~k------------Gr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~ 152 (358)
T COG1071 112 TGPCK------------GRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALAL 152 (358)
T ss_pred cCCCC------------CCCCcccccccccccCCCCceecccccHHHHHHHHH
Confidence 99998 9999999986 699999999999999999875554
No 31
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.78 E-value=1.6e-18 Score=156.32 Aligned_cols=129 Identities=24% Similarity=0.310 Sum_probs=98.6
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+.....+++|+||+++|.|+|+++| .|+++||+++|||++++. + .+|.||+++++|+++||.||+
T Consensus 33 ~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~ 106 (186)
T cd02015 33 QYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA----RPDKTVICIDGDGSFQMN-I-QELATAAQYNLPVKIVILNNGS 106 (186)
T ss_pred HhcccCCCCeEEeCCCccchhchHHHHHHHHHh----CCCCeEEEEEcccHHhcc-H-HHHHHHHHhCCCeEEEEEECCc
Confidence 456667776766667789999999999999988 478999999999998764 3 449999999999999999888
Q ss_pred Ccceeec----------c-ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------E-RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~-~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... . .....+||.+. |+|+++.+|++ .+++.+++++ +++.++|+|||+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~----a~~~~~p~liev~~~~ 175 (186)
T cd02015 107 LGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKE----ALASDGPVLLDVLVDP 175 (186)
T ss_pred cHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHH----HHhCCCCEEEEEEeCC
Confidence 5543210 0 11134788886 47999999985 5566555554 4457899999999864
No 32
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.78 E-value=2e-18 Score=154.94 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=101.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|++....+++|+||+++|.|+|+++| .|+++||+++|||++.+.. ..|.||+++++|+++||.||+
T Consensus 31 ~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~ 104 (177)
T cd02010 31 RYYRTYAPNTCLISNGLATMGVALPGAIGAKLV----YPDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNG 104 (177)
T ss_pred HhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCc
Confidence 466777787777778899999999999999998 4789999999999986643 348999999999999988887
Q ss_pred Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ......+||.+. |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~ 171 (177)
T cd02010 105 YGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERAL----AADGVHVIDCPVDY 171 (177)
T ss_pred chHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 7764211 111234688886 5799999997 5778877777765 46899999999864
No 33
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.77 E-value=6.6e-19 Score=153.68 Aligned_cols=127 Identities=30% Similarity=0.373 Sum_probs=101.4
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++......++||+++|.|+|+++| .|+++||+++|||++... . .+|.+|+++++|+++||.||+
T Consensus 11 ~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~-~-~el~ta~~~~~~v~~vv~nN~~ 84 (153)
T PF02775_consen 11 QYLRVRRPRRFLTSGGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS-L-QELATAVRYGLPVVIVVLNNGG 84 (153)
T ss_dssp HHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH-G-GGHHHHHHTTSSEEEEEEESSB
T ss_pred HhcCcCCCCeEEcCCCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec-c-chhHHHhhccceEEEEEEeCCc
Confidence 567788887777778899999999999999998 589999999999997654 2 338999999999999999998
Q ss_pred Ccceeec----------ccc---CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 82 YGMGTSA----------ERS---SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 82 ~~~~~~~----------~~~---~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
|++.... ... ...+||.+. ++|+++.+|+..|++++.+++++|+ +.++|+||||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 85 YGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp SHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred ceEeccccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 6663221 111 445788886 5799999998777788888777766 5789999996
No 34
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.77 E-value=2.5e-18 Score=157.60 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=101.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...++.|+||+++|+|+|+++| .|+++||+++|||++.++. .+|.||+++++|+++||.||+
T Consensus 31 ~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~ 104 (205)
T cd02003 31 KLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHG 104 (205)
T ss_pred HhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCc
Confidence 456777887777778899999999999999998 4789999999999987643 349999999999988888887
Q ss_pred Ccceeecc-----c------------------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeE
Q psy14560 82 YGMGTSAE-----R------------------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLV 136 (355)
Q Consensus 82 ~~~~~~~~-----~------------------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~l 136 (355)
|++..... . ....+||.++ |+|+++.+|+ +++++.+++++|+ +.++|+|
T Consensus 105 ~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~l 178 (205)
T cd02003 105 FGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK----ASDRTTV 178 (205)
T ss_pred cHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEE
Confidence 77532110 0 0124688887 4799999996 6888877777665 4689999
Q ss_pred EEEEeee
Q psy14560 137 LEVVTYR 143 (355)
Q Consensus 137 Iev~t~R 143 (355)
||+.+.+
T Consensus 179 IeV~v~~ 185 (205)
T cd02003 179 IVIKTDP 185 (205)
T ss_pred EEEEeec
Confidence 9999865
No 35
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.76 E-value=2.9e-18 Score=150.50 Aligned_cols=126 Identities=23% Similarity=0.226 Sum_probs=97.5
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG 83 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~ 83 (355)
++....|.......+.|+||+++|.|+|++++. ++++|++++|||++.+ ..++|++|+++++|+++||.||++.
T Consensus 30 ~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~ 103 (168)
T cd00568 30 YLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGY 103 (168)
T ss_pred heeeCCCCcEEeCCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCcc
Confidence 344456666777888999999999999999984 5889999999999887 4588999999999999999999843
Q ss_pred ceeecc-----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 84 MGTSAE-----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 84 ~~~~~~-----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
..+... .....+|+.++ ++|+++++|++ ++++.+++++ +++.++|+|||+.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~----a~~~~~p~~i~v~~ 168 (168)
T cd00568 104 GTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAE----ALAAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHH----HHhCCCCEEEEEEC
Confidence 322211 22235688876 47999999985 6666555555 44678999999875
No 36
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.76 E-value=4.9e-18 Score=151.52 Aligned_cols=126 Identities=25% Similarity=0.280 Sum_probs=98.5
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+.....++ |+||+++|+|+|+++|. |+++|+|++|||+++++. ++|.+|+++++|+++||.||+
T Consensus 33 ~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~ 105 (178)
T cd02002 33 DQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRG 105 (178)
T ss_pred HhcccCCCCCeeccCC-ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCcc
Confidence 4566667776666666 99999999999999984 689999999999988764 469999999999999999997
Q ss_pred Ccceeecc-----------------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSAE-----------------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~~-----------------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++..... .....+|+.++ ++|+++.+|++ ++++.+++++|+ +.++|+|||+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~vi~v~v 178 (178)
T cd02002 106 YGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREAL----AEGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 88753211 01124688886 47999999986 777777766665 468999999863
No 37
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.76 E-value=3e-18 Score=153.55 Aligned_cols=129 Identities=23% Similarity=0.202 Sum_probs=101.4
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+++...++.|+||+++|+|+|+++| .++++||+++|||++.++ +.| |.+++++++|+++||.||+
T Consensus 34 ~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a----~~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~ 107 (178)
T cd02014 34 RHLRMNGKQRFILSGLLATMGNGLPGAIAAKLA----YPDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSD 107 (178)
T ss_pred HhcccCCCCcEEcCCCCchhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCc
Confidence 567777887888788889999999999999988 478999999999998876 455 8999999999999999997
Q ss_pred Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ......+||.++ |+|+++.+++ +++++.++++++ ++.++|+|||+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a----~~~~~p~liev~~~~ 174 (178)
T cd02014 108 LGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEA----LAADGPVVIDVVTDP 174 (178)
T ss_pred hhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 7764211 111234688886 5799999997 466665555554 456899999999864
No 38
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.75 E-value=3.4e-18 Score=167.51 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=104.9
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|+||.|++.|+|+|+|.|+.+ -+..|+|++|||.+++|.+|||+.+|+.++|. +|+|+.+|
T Consensus 103 ~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N 182 (332)
T PF00456_consen 103 TPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSN 182 (332)
T ss_dssp STT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEE
T ss_pred CceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecC
Confidence 44666689999999999999999988632 25789999999999999999999999999999 99999999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
+..+..+..... ..|+.++ |+||.+++| ||+|++++.+|+.+|.+ ..++|++|.+.|...+|.+.
T Consensus 183 ~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~ 250 (332)
T PF00456_consen 183 GIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPF 250 (332)
T ss_dssp SEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTT
T ss_pred CcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchh
Confidence 988877665433 3566654 789999998 99999998888887643 24789999999998888753
No 39
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.75 E-value=7.9e-18 Score=177.32 Aligned_cols=130 Identities=29% Similarity=0.310 Sum_probs=108.9
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccC----
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSS---- 92 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~---- 92 (355)
.++|++|.++|+|+|+|+|.|+++.+..|+|++|||++++|.+||+++.|+.++||+|+||+||+++++++.....
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~ 187 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLA 187 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHH
Confidence 3679999999999999999999999999999999999999999999999999999999999999999987654110
Q ss_pred -------------------C-Cc---c-Hhhh----------------cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcC
Q psy14560 93 -------------------A-ST---D-YYTR----------------GDYIPGI-WVDGMDVLAVREASKFAVNYASSG 131 (355)
Q Consensus 93 -------------------~-~~---d-~~~~----------------A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~ 131 (355)
. .+ + +.++ ++||.++ .|||||+.++.++++. +++.
T Consensus 188 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~----ak~~ 263 (617)
T TIGR00204 188 QLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKN----AKKL 263 (617)
T ss_pred HhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHH----HhcC
Confidence 0 00 1 2121 4699888 8999999998888765 4456
Q ss_pred CCCeEEEEEeeeeCCCCCC
Q psy14560 132 KGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 132 ~gP~lIev~t~R~~GHs~~ 150 (355)
++|++|++.|.+.+|.+..
T Consensus 264 ~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 264 KGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred CCCEEEEEEecCCCCCchh
Confidence 7899999999999997653
No 40
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.74 E-value=1.8e-17 Score=149.41 Aligned_cols=130 Identities=20% Similarity=0.106 Sum_probs=100.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|++....+.+|+||+++|.|+|+++| .|+++||+++|||++.+. +.| |.||+++++|+++||.||+
T Consensus 33 ~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala----~~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~ 106 (183)
T cd02005 33 LDLKLPKGTRFISQPLWGSIGYSVPAALGAALA----APDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDG 106 (183)
T ss_pred hhccCCCCCEEEeccchhhHhhhHHHHHHHHHh----CCCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCC
Confidence 456667777777778889999999999999998 478999999999998663 566 8899999999888887776
Q ss_pred Ccceeeccc------cCCCccHhhhc--CC----cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAER------SSASTDYYTRG--DY----IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~~------~~~~~d~~~~A--~G----~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++...... ....+||.+.| +| +++.+|+ ++.++.++++++++ ..++|+|||+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 107 YTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred cEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 776542211 11246888874 67 7888886 68888777777664 25799999999864
No 41
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.74 E-value=8e-18 Score=175.01 Aligned_cols=131 Identities=25% Similarity=0.352 Sum_probs=106.0
Q ss_pred CccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560 2 QQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG 81 (355)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~ 81 (355)
.+++++..|+++..++++|+||+++|+|||++++ .|+++|||+.|||++++. . ..|.||+++++|+++||.||+
T Consensus 390 a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla----~P~r~Vv~i~GDG~F~m~-~-qEL~Ta~r~~lpv~ivv~nN~ 463 (550)
T COG0028 390 ARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLA----APDRKVVAIAGDGGFMMN-G-QELETAVRYGLPVKIVVLNNG 463 (550)
T ss_pred HHhcccCCCCcEEcCCCCccccchHHHHHHHHhh----CCCCcEEEEEcccHHhcc-H-HHHHHHHHhCCCEEEEEEECC
Confidence 4688899999999999999999999999999998 589999999999998764 2 449999999999999999998
Q ss_pred -Ccceeeccc----------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 82 -YGMGTSAER----------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 82 -~~~~~~~~~----------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
|++...... .+.++.|.+. |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.+.
T Consensus 464 ~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al----~~~~p~lidv~id~~ 533 (550)
T COG0028 464 GYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL----ASDGPVLIDVVVDPE 533 (550)
T ss_pred ccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 777543211 1111228776 5799999998 6777777666655 578999999999754
No 42
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.73 E-value=1.3e-18 Score=172.12 Aligned_cols=109 Identities=40% Similarity=0.635 Sum_probs=97.3
Q ss_pred cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560 155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT 225 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~ 225 (355)
+|| -.+|.|++++.+ + |.++...+||++++|...+|+++||++++||+|++.+++|+++.++|+|++|+.+
T Consensus 35 ~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~ 114 (362)
T PLN02269 35 FFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKD 114 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 466 456899987654 3 3567789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560 226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
|+|+ |||||||+++ .||+|.++|||+|+|+|+.-..|.
T Consensus 115 g~~~------------GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~ 154 (362)
T PLN02269 115 GCSR------------GKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQ 154 (362)
T ss_pred CCCC------------CCCCcccccchhcCccccCchhhccccHHHHHHHHH
Confidence 9997 9999999986 799999999999999999764443
No 43
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.72 E-value=1.1e-16 Score=158.18 Aligned_cols=132 Identities=20% Similarity=0.101 Sum_probs=113.2
Q ss_pred ccccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560 14 NFYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMG 85 (355)
Q Consensus 14 ~~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~ 85 (355)
++..++|++|.+++.|+|.|+|.|+ .+.+..|+|++|||.+++|.+||++.+|+.++|. +|+||.+|++++.
T Consensus 112 gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid 191 (386)
T cd02017 112 FWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD 191 (386)
T ss_pred CeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC
Confidence 4677889999999999999999997 4467889999999999999999999999999996 9999999999887
Q ss_pred eecccc-CCCccHhhh--cCCcceEEEe----------------------------------------------------
Q psy14560 86 TSAERS-SASTDYYTR--GDYIPGIWVD---------------------------------------------------- 110 (355)
Q Consensus 86 ~~~~~~-~~~~d~~~~--A~G~~~~~Vd---------------------------------------------------- 110 (355)
.+.... ....++.++ |+||.+++||
T Consensus 192 G~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 192 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred CcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 776653 234677775 7899999998
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 111 -----------------GMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 111 -----------------G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
|+|..++.+|+.++.+ ..++|++|.+.|...+|.+
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCC
Confidence 9999988888776543 2468999999999888876
No 44
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.71 E-value=1.9e-17 Score=173.75 Aligned_cols=133 Identities=26% Similarity=0.220 Sum_probs=105.5
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.....+++|+||+++|.|+|+++| .|+++||+++|||++++.. .+|.||++++||+++||.||+
T Consensus 401 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~pdr~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvv~iV~NN~~ 474 (588)
T TIGR01504 401 QMLHVYKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVALSGDYDFQFMI--EELAVGAQHNIPYIHVLVNNAY 474 (588)
T ss_pred HhccccCCCcEEeCCccccccchHhHHHhhhhh----CCCCcEEEEEcchHhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence 567778887777677889999999999999998 4899999999999987752 349999999999999999888
Q ss_pred Ccceeeccc----------cC----------CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 82 YGMGTSAER----------SS----------ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 82 ~~~~~~~~~----------~~----------~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
|++...... .. .++||++. |+|+++.+|+ +++++.+++++|++.+++.++|+|||+
T Consensus 475 yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV 552 (588)
T TIGR01504 475 LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEV 552 (588)
T ss_pred hHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEE
Confidence 876421100 00 13789887 4799999997 588888888888765444689999999
Q ss_pred Eeee
Q psy14560 140 VTYR 143 (355)
Q Consensus 140 ~t~R 143 (355)
.+.+
T Consensus 553 ~i~~ 556 (588)
T TIGR01504 553 ILER 556 (588)
T ss_pred Eecc
Confidence 9853
No 45
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.71 E-value=4.8e-17 Score=145.56 Aligned_cols=126 Identities=18% Similarity=0.092 Sum_probs=96.8
Q ss_pred ccccc-cCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560 3 QCMIV-INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG 81 (355)
Q Consensus 3 ~~~~~-~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~ 81 (355)
++++. ..|++.....+.+.||+++|.|+|+++|. +++||+++|||++.+.. .+|.||+++++|+++||.||+
T Consensus 33 ~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~~--~eL~ta~~~~l~v~ivVlNN~ 105 (175)
T cd02009 33 LFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHDL--NGLLLGKQEPLNLTIVVINNN 105 (175)
T ss_pred HccCccCCCceEEecCCccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHhH--HHHHhccccCCCeEEEEEECC
Confidence 45666 67766666677799999999999999983 78899999999987642 348999999999999999887
Q ss_pred -Ccceeeccc---------cC---CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 -YGMGTSAER---------SS---ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 -~~~~~~~~~---------~~---~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++...... .. ..+||.+. |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+
T Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~v 174 (175)
T cd02009 106 GGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESAL----AQDGPHVIEVKT 174 (175)
T ss_pred CCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 775322110 11 24688886 4799999997 6778777777665 468999999976
No 46
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.70 E-value=8.8e-17 Score=168.05 Aligned_cols=134 Identities=22% Similarity=0.206 Sum_probs=109.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|..+...+++|+||+++|.|+|+++| .|+++||+++|||+++++...++|+||+++++|+++||+||+
T Consensus 413 ~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~ 488 (569)
T PRK08327 413 RQARLNKPGSYFGDGSAGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGG 488 (569)
T ss_pred HhcCccCCCCeeeCCCCCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcc
Confidence 567777887787777889999999999999987 589999999999998876544569999999999999999996
Q ss_pred Ccceeec-----------------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSA-----------------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~-----------------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++.... .... +.+||+++ |+|+++.+|+ +++++.+++++|++.++++++|+|||+.+
T Consensus 489 yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 489 WLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 8764210 1111 34688887 4799999997 78999999999998877778899999987
Q ss_pred e
Q psy14560 142 Y 142 (355)
Q Consensus 142 ~ 142 (355)
.
T Consensus 567 ~ 567 (569)
T PRK08327 567 D 567 (569)
T ss_pred c
Confidence 4
No 47
>PRK06154 hypothetical protein; Provisional
Probab=99.70 E-value=8e-17 Score=168.26 Aligned_cols=132 Identities=22% Similarity=0.178 Sum_probs=104.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|++....+++|+||+++|.|+|+++| .|+++|||++|||++++.. ..|.||++++||+++||.||+
T Consensus 414 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la----~p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~ 487 (565)
T PRK06154 414 PFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLA----RPDALVINLWGDAAFGMTG--MDFETAVRERIPILTILLNNFS 487 (565)
T ss_pred HhCCCCCCCeEEccCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECCc
Confidence 467777887777777789999999999999998 4799999999999987753 349999999999999999998
Q ss_pred Ccceeeccc--------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAER--------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~~--------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++...... ....+||+++ |+|+++++|+ +++++.+++++|++.++ .++|+|||+.+.+
T Consensus 488 yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 488 MGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred cceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 876432110 1114689887 4799999998 58888888888876432 4679999999854
No 48
>PRK07524 hypothetical protein; Provisional
Probab=99.70 E-value=8.3e-17 Score=166.89 Aligned_cols=132 Identities=21% Similarity=0.181 Sum_probs=104.1
Q ss_pred ccccccCCCCCcc-ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560 3 QCMIVINPSPKNF-YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~-~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~ 81 (355)
++++...|..... .++.|+||+++|.|+|+++| .|+++|||++|||++++. +.| |.||++++||+++||.||+
T Consensus 389 ~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~ 462 (535)
T PRK07524 389 LYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG----APERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNND 462 (535)
T ss_pred HhcccCCCCceEeCCCCcccccchHHHHHHHHHh----CCCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECC
Confidence 4567777866655 67789999999999999998 489999999999998764 444 9999999999999999985
Q ss_pred -Ccceee---------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560 82 -YGMGTS---------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG 146 (355)
Q Consensus 82 -~~~~~~---------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G 146 (355)
|++... .......+||.+. |+|+++.+|+ +++++.+++++++ +.++|+|||+.++|+.+
T Consensus 463 ~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 463 GYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF----ARPGPTLIEVDQACWFA 533 (535)
T ss_pred chHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCcccc
Confidence 875421 1112235788887 4799999997 6777777666655 46899999999998765
No 49
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.68 E-value=2.2e-16 Score=139.19 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=86.6
Q ss_pred CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc-CCCEEEEEEeCC-CcceeeccccCCCcc
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW-GIPCIYVCENNG-YGMGTSAERSSASTD 96 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~-~LPvi~Vv~NN~-~~~~~~~~~~~~~~d 96 (355)
+|+||+++|.|+|+++|. + ++|||+.|||++.+.. .+|.|++++ ++|+++||.||+ |++..........+|
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 899999999999999984 3 8899999999975432 238899999 599999998887 776432222223578
Q ss_pred Hhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 97 YYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 97 ~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
|.+. |+|+++++|+ +++++.++++++++ .++|+|||+.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 9887 4799999986 58888777777664 579999999874
No 50
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=1.5e-16 Score=166.29 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=104.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|..+...+++|+||+++|+|+|+++| .|+++||+++|||++.+.. .+|.||++++||+++||.||+
T Consensus 404 ~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~eL~Ta~r~~l~v~ivV~NN~~ 477 (574)
T PRK07979 404 LYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA----LPEETVVCVTGDGSIQMNI--QELSTALQYELPVLVLNLNNRY 477 (574)
T ss_pred HhcccCCCCeEEeCCCccchhhHHHHHHHHHHh----CCCCeEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCch
Confidence 467777887777778889999999999999998 4789999999999987642 349999999999999999998
Q ss_pred Ccceeec---------c-ccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------E-RSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~-~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... . ... ..+||.+. |+|+++++|+ +++++.+++++|++.++ .++|+|||+.+.+
T Consensus 478 yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 478 LGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred hhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 7763211 0 111 34789887 4799999997 68888888888876433 3789999999864
No 51
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=1.6e-16 Score=166.87 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=102.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++.+|+.+...+++|+||+++|.|+|+++| .|+++||+++|||++++.. .+|.||++++||+++||.||+
T Consensus 413 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~ 486 (595)
T PRK09107 413 QFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA----HPDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQY 486 (595)
T ss_pred HhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh----CCCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence 567778887777777889999999999999998 5899999999999987743 349999999999999999998
Q ss_pred Ccceeec---------ccc--CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------ERS--SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~~~--~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ... ...+||++. |+|+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 487 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 487 MGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred cHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 7763210 111 124789887 5799999996 57787777777653 5789999999864
No 52
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.68 E-value=1.1e-16 Score=167.88 Aligned_cols=133 Identities=23% Similarity=0.190 Sum_probs=105.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.....+++|+||+++|.|+|+++| .|+++|||++|||++++.. . +|.||++++||+++||.||+
T Consensus 402 ~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~~-~-eL~Ta~~~~lpv~~vV~NN~~ 475 (591)
T PRK11269 402 QFLHVYKPRHWINCGQAGPLGWTIPAALGVRAA----DPDRNVVALSGDYDFQFLI-E-ELAVGAQFNLPYIHVLVNNAY 475 (591)
T ss_pred HhcccCCCCcEEeCCccccccchhhhHHhhhhh----CCCCcEEEEEccchhhcCH-H-HHHHHHHhCCCeEEEEEeCCc
Confidence 466777787777677889999999999999998 4789999999999987643 3 49999999999999999998
Q ss_pred Ccceeecc----------cc----------CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 82 YGMGTSAE----------RS----------SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 82 ~~~~~~~~----------~~----------~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
|++..... .. ..++||++. ++|+++.+|+ +++++.+++++|++.+.+.++|+|||+
T Consensus 476 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV 553 (591)
T PRK11269 476 LGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEV 553 (591)
T ss_pred hhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEE
Confidence 77532110 00 023689887 4799999996 688888888888765545689999999
Q ss_pred Eeee
Q psy14560 140 VTYR 143 (355)
Q Consensus 140 ~t~R 143 (355)
.+.+
T Consensus 554 ~v~~ 557 (591)
T PRK11269 554 ILER 557 (591)
T ss_pred Eecc
Confidence 9864
No 53
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.67 E-value=1.1e-16 Score=167.87 Aligned_cols=134 Identities=19% Similarity=0.099 Sum_probs=105.6
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.....+++|+||+++|.|+|+++| .|+++||+++|||++.+. ..| |.||+++++|+++||.||+
T Consensus 418 ~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la----~p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~ 491 (588)
T PRK07525 418 SYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA----CPDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQ 491 (588)
T ss_pred HhcccCCCCeEEccccccccccHHHHHHHHHHh----CCCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCch
Confidence 567788888877777889999999999999998 578999999999998775 344 8899999999999998886
Q ss_pred Ccceeec----------cccC-CCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS 145 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~ 145 (355)
|++.... .... ..+||.++| +|+++++|+ +++++.++++++++.. +.++|+|||+.+.+..
T Consensus 492 y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 492 WGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred hHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 7753211 0111 236888874 799999997 6788888888887643 2368999999997544
No 54
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.67 E-value=3.8e-16 Score=165.17 Aligned_cols=126 Identities=21% Similarity=0.239 Sum_probs=102.8
Q ss_pred cccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc-------ccC
Q psy14560 20 GIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE-------RSS 92 (355)
Q Consensus 20 g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~-------~~~ 92 (355)
++-+++++.|+|+|+|.++.++++.|+|++|||++++|.+||++++|+.+++|+++|++||+++++.+.. ...
T Consensus 119 g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~ 198 (641)
T PRK12571 119 AHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLR 198 (641)
T ss_pred CCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHh
Confidence 4346678899999999999999999999999999999999999999999999999999999999877653 111
Q ss_pred CCccH------------------------------------hh-hcCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCC
Q psy14560 93 ASTDY------------------------------------YT-RGDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGP 134 (355)
Q Consensus 93 ~~~d~------------------------------------~~-~A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP 134 (355)
....+ .+ .++||.++ .|||||..++.+|+++|.+. .++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P 275 (641)
T PRK12571 199 SSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGP 275 (641)
T ss_pred cCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCC
Confidence 11111 11 26799999 79999999888887765421 4789
Q ss_pred eEEEEEeeeeCCCC
Q psy14560 135 LVLEVVTYRYSGHS 148 (355)
Q Consensus 135 ~lIev~t~R~~GHs 148 (355)
++|++.|...+|.+
T Consensus 276 ~~I~~~T~kGkG~~ 289 (641)
T PRK12571 276 VLVHVVTEKGRGYA 289 (641)
T ss_pred EEEEEEecCccCcc
Confidence 99999999888876
No 55
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=1.6e-16 Score=166.65 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=103.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|.|+|+++| .|+++||+++|||++++.. ..|.||+++++|+++||.||+
T Consensus 420 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~Vv~i~GDGsf~m~~--~eL~Ta~r~~lpviivV~NN~~ 493 (587)
T PRK06965 420 QFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA----HPDDDVVCITGEGSIQMCI--QELSTCLQYDTPVKIISLNNRY 493 (587)
T ss_pred HhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEEEEcchhhhcCH--HHHHHHHHcCCCeEEEEEECCc
Confidence 567777887888788889999999999999998 4789999999999987753 349999999999999999998
Q ss_pred Ccceeec---------cc-cC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------ER-SS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~~-~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .. .. ..+||++. |+|+++++|+ +..++.+++++|++. .++|+|||+.+.+
T Consensus 494 ~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 494 LGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred chHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 6653211 01 11 34789887 4799999997 577888888877652 3689999999863
No 56
>KOG0450|consensus
Probab=99.67 E-value=1.8e-16 Score=162.68 Aligned_cols=219 Identities=20% Similarity=0.244 Sum_probs=171.3
Q ss_pred ccCCcccccchHHHHHHHHHHHhcC-----CCCeEEEEeCccc-ccccHHHHHHHHHHHcCCC------EEEEEEeCCCc
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKG-----TGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIP------CIYVCENNGYG 83 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~-----~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LP------vi~Vv~NN~~~ 83 (355)
..+.++|...-|+.+|-..|.++.. .+...|.++||++ .++|.++|+|.+ ..|| .|+||.||+.|
T Consensus 370 VANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hl---s~LP~YtT~GTvHvVvNNQIg 446 (1017)
T KOG0450|consen 370 VANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHL---SDLPSYTTGGTVHVVVNNQIG 446 (1017)
T ss_pred ecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeecc---ccCCCcccCCeEEEEEccccc
Confidence 4567999999999999999988764 3467899999999 589999999987 4566 99999999999
Q ss_pred ceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc-----ce
Q psy14560 84 MGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT-----SF 156 (355)
Q Consensus 84 ~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~-----~Y 156 (355)
++|......+.|...+.| .++|.++|+++|+++|.-+.+-|.++...++..++|++.+||..||++-|.+. +|
T Consensus 447 FTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMY 526 (1017)
T KOG0450|consen 447 FTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMY 526 (1017)
T ss_pred cccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHH
Confidence 988766555555555544 59999999999999999999999999999999999999999999999988665 56
Q ss_pred e------cchhHHHHHHHHhhhhhhhhHHHHHHhh---HHHhhc-ccccccccccccccee-------------------
Q psy14560 157 R------DPITSFKEKMLNSELATVDELKEACAVG---MRAVMR-EQDSIISAYRVHGWTY------------------- 207 (355)
Q Consensus 157 R------DpIr~fee~Li~~Gl~t~~e~qEa~qvg---~~~al~-~~D~v~~~yR~~~~~~------------------- 207 (355)
+ ..+..|.++|+..|.+++.+++|..... ...+.. +.|+....+|++--.-
T Consensus 527 k~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~T 606 (1017)
T KOG0450|consen 527 KQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPST 606 (1017)
T ss_pred HHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCC
Confidence 5 4578999999999999999997665443 333332 3455544445433111
Q ss_pred -----------------ecCCCHHHHHHHHhcccccCCCCCCCCCccc
Q psy14560 208 -----------------LMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238 (355)
Q Consensus 208 -----------------~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~~ 238 (355)
+.|+.++.-+.+++..+..+-+. .-+||-+
T Consensus 607 gv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal 653 (1017)
T KOG0450|consen 607 GVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWAL 653 (1017)
T ss_pred CCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHH
Confidence 35666777777877777666554 5689975
No 57
>PRK05858 hypothetical protein; Provisional
Probab=99.67 E-value=2e-16 Score=164.35 Aligned_cols=129 Identities=19% Similarity=0.140 Sum_probs=102.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...++.|+||+++|.|+|+++| .|+++||+++|||++++. +. .|.||++++||+++||+||+
T Consensus 390 ~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la----~p~r~vv~i~GDG~f~~~-~~-eL~Ta~~~~lpi~ivV~NN~~ 463 (542)
T PRK05858 390 RYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA----RPSRQVVLLQGDGAFGFS-LM-DVDTLVRHNLPVVSVIGNNGI 463 (542)
T ss_pred HHccccCCCCEEeCCCccccccchhHHHHHHHh----CCCCcEEEEEcCchhcCc-HH-HHHHHHHcCCCEEEEEEeCCc
Confidence 467777887776667789999999999999998 489999999999998764 33 49999999999999999987
Q ss_pred Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++..... ...+.+||.+. |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 464 y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~~~~ 531 (542)
T PRK05858 464 WGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAF----ASGVPYLVNVLTDP 531 (542)
T ss_pred hhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEECC
Confidence 77632110 11145799887 4799999997 5778877777765 46899999999964
No 58
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.67 E-value=2.6e-16 Score=167.09 Aligned_cols=221 Identities=22% Similarity=0.229 Sum_probs=171.3
Q ss_pred ccCCcccccchHHHHHHHHHHHhcCC-----CCeEEEEeCccc-ccccHHHHHHHHHHHcCC---CEEEEEEeCCCccee
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKGT-----GGVCFALYGDGA-SNQGQNFEAYNIAKLWGI---PCIYVCENNGYGMGT 86 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~~-----~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~L---Pvi~Vv~NN~~~~~~ 86 (355)
..+.++|....|+..|.+.|.+.... ....+.++||.+ .++|.+.|+||+....+. +.+++|.||+.|.+|
T Consensus 294 a~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTT 373 (906)
T COG0567 294 AFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT 373 (906)
T ss_pred cCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCC
Confidence 34669999999999999999886533 245679999999 599999999999766555 399999999999988
Q ss_pred eccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc-----cee--
Q psy14560 87 SAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT-----SFR-- 157 (355)
Q Consensus 87 ~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~-----~YR-- 157 (355)
......+.+...+.| .++|+++|+|.||+++..+.+-|+++...++++++|++.+||..||++.|.+. +|.
T Consensus 374 sp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I 453 (906)
T COG0567 374 SPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKI 453 (906)
T ss_pred CcccccCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHH
Confidence 744444444444444 48999999999999999999999999999999999999999999999998776 454
Q ss_pred ----cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccc----------cc---ccccccccc----------------
Q psy14560 158 ----DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQ----------DS---IISAYRVHG---------------- 204 (355)
Q Consensus 158 ----DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~----------D~---v~~~yR~~~---------------- 204 (355)
.+...|.++|++.|.++.++.+++...... .++.. || ..+.|+.+.
T Consensus 454 ~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L 532 (906)
T COG0567 454 KKHPTVRKLYADKLIAEGVISEEEADELVNDYRD-ALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHVDTGVPKKTLKEL 532 (906)
T ss_pred hcCCChhhhHHHHHHhhccccHHHHHHHHHHHHH-HhhhhhhHHhHHHhhhccccccccccCCcccccccccCHHHHHHH
Confidence 455789999999999988888766655421 12111 11 123333333
Q ss_pred ----ceeecCCCHHHHHHHHhcccccCCCCCCCCCcc
Q psy14560 205 ----WTYLMGVSVFGVLSELTGRRTGCAKGKGPISWE 237 (355)
Q Consensus 205 ----~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~ 237 (355)
-.++.|+.+++.+.+++.++.....++.++||-
T Consensus 533 ~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~ 569 (906)
T COG0567 533 GKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWG 569 (906)
T ss_pred HHHhhcCCcceehhHHHHHHHHHHHHHhccccccchh
Confidence 112578889999999998888877778899995
No 59
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.67 E-value=3.2e-17 Score=161.41 Aligned_cols=108 Identities=29% Similarity=0.498 Sum_probs=97.6
Q ss_pred cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560 155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT 225 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~ 225 (355)
.|| -.+|.|++++.+ + |.++...+||+++++...+|+++||++|+||+|++.+++|+++..+|+|++|+.+
T Consensus 25 ~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~ 104 (341)
T CHL00149 25 LYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKET 104 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHHHHHHcCCCC
Confidence 466 556999997665 3 4567889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560 226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS 274 (355)
Q Consensus 226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~ 274 (355)
|+++ |||||||+++ .+++++++++|.|+|.|+.-.++
T Consensus 105 g~~~------------Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A 143 (341)
T CHL00149 105 GCSR------------GRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQ 143 (341)
T ss_pred CCCC------------CCCCCccccchhcCccCCChhhhccHHHHHHHHHH
Confidence 9997 9999999986 79999999999999999988655
No 60
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=2.4e-16 Score=164.83 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=101.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++...+++|+||+++|.|+|+++| .|+++||+++|||++++. +.| |.||++++||+++||.||+
T Consensus 405 ~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~ 478 (570)
T PRK06725 405 HFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKF 478 (570)
T ss_pred HhccccCCCeEEccCCcccccchhhHHHhhHhh----cCCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCc
Confidence 356677787777777889999999999999998 578999999999998654 444 9999999999999999998
Q ss_pred Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ......+||+++ |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 479 ~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~~p~liev~id~ 546 (570)
T PRK06725 479 LGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAF----AHEGPVVVDFCVEE 546 (570)
T ss_pred cHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 6653211 012235788887 5799999996 6777766666554 46899999999864
No 61
>PRK12474 hypothetical protein; Provisional
Probab=99.67 E-value=2.6e-16 Score=162.68 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=96.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+.+...+ .|+||+++|.|+|+++| .|+++|||++|||++++.. ..|.||++++||+++||.||+
T Consensus 373 ~~~~~~~p~~~~~~~-~gsmG~glpaAiGa~lA----~p~r~vv~i~GDG~f~m~~--qEL~Ta~r~~lpv~iiV~NN~~ 445 (518)
T PRK12474 373 MSYDRARPHTHLPLT-GGSIGQGLPLAAGAAVA----APDRKVVCPQGDGGAAYTM--QALWTMARENLDVTVVIFANRS 445 (518)
T ss_pred HhhcccCCCCEEccC-CCccCccHHHHHHHHHH----CCCCcEEEEEcCchhcchH--HHHHHHHHHCCCcEEEEEcCCc
Confidence 456667776555443 49999999999999998 4899999999999987643 349999999999999999998
Q ss_pred Ccceeec---------c------cc--CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSA---------E------RS--SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~---------~------~~--~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++.... . .. .+++||.++ |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+
T Consensus 446 y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~----~~~~p~liev~~ 518 (518)
T PRK12474 446 YAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAM----AQRGPRLIEAMI 518 (518)
T ss_pred chHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 8764311 0 00 113588887 5799999997 4777777777765 468999999863
No 62
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.67 E-value=3.2e-16 Score=162.68 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=102.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+.....++.|+||+++|.|+|+++| .|+++||+++|||++++. . .+|.||++++||+++||.||+
T Consensus 391 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~~~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpi~ivV~NN~~ 464 (539)
T TIGR02418 391 RYFRSYRARHLLISNGMQTLGVALPWAIGAALV----RPNTKVVSVSGDGGFLFS-S-MELETAVRLKLNIVHIIWNDNG 464 (539)
T ss_pred HhcccCCCCceecCCCccccccHHHHHHHHHHh----CCCCcEEEEEcchhhhch-H-HHHHHHHHhCCCeEEEEEECCc
Confidence 456677787777777889999999999999998 478999999999998774 2 349999999999999999887
Q ss_pred Ccceeec-----c----ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 82 YGMGTSA-----E----RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 82 ~~~~~~~-----~----~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
|++.... . .....+||.+. |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+.
T Consensus 465 y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~v~~~ 532 (539)
T TIGR02418 465 YNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAM----EVEGPVVVDIPVDYS 532 (539)
T ss_pred chHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 7763211 1 11235788887 4799999997 5777777777665 467899999998643
No 63
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.67 E-value=3.3e-17 Score=159.72 Aligned_cols=109 Identities=45% Similarity=0.686 Sum_probs=97.6
Q ss_pred cee--cchhHHHHHHHH---hh----hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560 155 SFR--DPITSFKEKMLN---SE----LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT 225 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~G----l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~ 225 (355)
.|| -.+|.|++++.+ +| .++...+||+.+++.+.+|+++||++|+||+|++.+++|+++.++|++++|+.+
T Consensus 7 ~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~ 86 (315)
T TIGR03182 7 LYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAELTGRAT 86 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 466 456899998664 44 355789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560 226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
|+|+ |||||||+.+ .|+++.++++|.|+|.|+.-..+.
T Consensus 87 g~~~------------Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~ 126 (315)
T TIGR03182 87 GCSK------------GKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFAN 126 (315)
T ss_pred CCCC------------CCCCCCCcCchhhCcccCcCcccccccHHHHHHHHH
Confidence 9997 9999999986 799999999999999999886655
No 64
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.67 E-value=7.1e-16 Score=138.73 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=85.8
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-CEEEEEEeCC-CcceeeccccC-CC
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-PCIYVCENNG-YGMGTSAERSS-AS 94 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-Pvi~Vv~NN~-~~~~~~~~~~~-~~ 94 (355)
.+|+||+++|.|+|+++|. + ++|||++|||++.+.. .+|.+++++++ |+++||.||+ |++........ ..
T Consensus 40 ~~g~mG~~lp~AiGaala~----~-~~vv~i~GDG~f~m~~--~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~ 112 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQ----P-RKVIVIDGDGSLLMNL--GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKK 112 (179)
T ss_pred cccchhhHHHHHHHHHhcC----C-CcEEEEECCcHHHhCH--HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCC
Confidence 3899999999999999984 4 7899999999985432 34888999995 6877776665 88754322112 25
Q ss_pred ccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 95 TDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 95 ~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
+||.++ ++|+++.+|++ +++++.+++++++ ++|+|||+.+.+.
T Consensus 113 ~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~ 157 (179)
T cd03372 113 TDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPG 157 (179)
T ss_pred CCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCC
Confidence 788887 47999999986 6777766666654 6899999999643
No 65
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.67 E-value=3.7e-16 Score=163.55 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=102.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...++.|+||+++|.|+|+++| .|+++||+++|||++++. . .+|.|++++++|+++||.||+
T Consensus 391 ~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la----~p~r~Vv~i~GDGsf~m~-~-~eL~Tavr~~lpi~~VV~NN~~ 464 (575)
T TIGR02720 391 RHLKMTPKNKWITSNLFATMGVGVPGAIAAKLN----YPDRQVFNLAGDGAFSMT-M-QDLLTQVQYHLPVINIVFSNCT 464 (575)
T ss_pred HhCCcCCCCeEEcCCCcchhhchHHHHHHHHHh----CCCCcEEEEEcccHHHhh-H-HHHHHHHHhCCCeEEEEEeCCc
Confidence 567777787777677789999999999999998 579999999999998774 3 349999999999999988887
Q ss_pred Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
|++.... ......+||+++ |+|+++.+|+ +.+++.++++++++ . +.++|+|||+.+.
T Consensus 465 yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~ 532 (575)
T TIGR02720 465 YGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKIT 532 (575)
T ss_pred cHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeC
Confidence 8863211 111235788887 4799999997 57788888887765 2 4688999999985
No 66
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.66 E-value=3.6e-16 Score=163.69 Aligned_cols=132 Identities=22% Similarity=0.144 Sum_probs=105.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++...+++|+||+++|.|+|+++| .|+++|||++|||++++.. .+|.||++++||+++||.||+
T Consensus 413 ~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~ 486 (579)
T TIGR03457 413 SYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIA----APDRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQ 486 (579)
T ss_pred HhcCcCCCCeEEcCCccccccchHHHHHhhhhh----CCCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcc
Confidence 577888887777777889999999999999998 5789999999999987753 349999999999999999887
Q ss_pred Ccceeec----------cccCCC-ccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSSAS-TDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~~~-~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ...... +||.+. |+|+++++|+ +++++.+++++|++.. +.++|+|||+.+.+
T Consensus 487 yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 487 WGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred hHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 7763211 011222 589887 4799999997 6888988888887643 35789999999964
No 67
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.66 E-value=5.5e-16 Score=162.11 Aligned_cols=129 Identities=21% Similarity=0.187 Sum_probs=100.8
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++....|+.+...++.|+||+++|.|+|+++| .|+++||+++||||+++. .. +|.||++++||+++||.||+
T Consensus 391 ~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la----~p~r~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~ 464 (574)
T PRK09124 391 RYLKMNGKRRLLGSFNHGSMANAMPQALGAQAA----HPGRQVVALSGDGGFSML-MG-DFLSLVQLKLPVKIVVFNNSV 464 (574)
T ss_pred HhcccCCCCeEEecCCcccccchHHHHHHHHHh----CCCCeEEEEecCcHHhcc-HH-HHHHHHHhCCCeEEEEEeCCc
Confidence 455666776666667889999999999999998 478999999999998664 23 39999999999999999887
Q ss_pred Ccceee---------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTS---------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~---------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++... .......+||.+. |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 465 ~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~i~~ 531 (574)
T PRK09124 465 LGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAF----AHDGPALVDVVTAK 531 (574)
T ss_pred cccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 776421 0111234689887 4799999997 5778877777765 45789999999864
No 68
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=4e-16 Score=163.17 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=102.1
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++.+|+.+...+++|+||+++|+|+|+++| .|+++||+++|||++.+.. ..|.||++++||+++||.||+
T Consensus 404 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpv~~vV~NN~~ 477 (572)
T PRK08979 404 LYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA----MPDETVVCVTGDGSIQMNI--QELSTALQYDIPVKIINLNNRF 477 (572)
T ss_pred HhcCcCCCCeEEccCCcccccchhhHHHhhhhh----CCCCeEEEEEcchHhhccH--HHHHHHHHcCCCeEEEEEeCCc
Confidence 466777887777777889999999999999998 4789999999999987752 349999999999999999888
Q ss_pred Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ..+||++. |+|+++.+|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 478 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 478 LGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 7764311 0111 24789887 4799999997 577887777776641 3789999999864
No 69
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.66 E-value=8.8e-16 Score=139.25 Aligned_cols=115 Identities=20% Similarity=0.123 Sum_probs=88.6
Q ss_pred CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-CEEEEEEeCC-CcceeeccccCCCcc
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-PCIYVCENNG-YGMGTSAERSSASTD 96 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-Pvi~Vv~NN~-~~~~~~~~~~~~~~d 96 (355)
+|+||+++|.|+|+++| .|+++|||++|||++.+. .++|.+++++++ |+++||.||+ |++..........+|
T Consensus 47 ~g~mG~~lpaAiGaala----~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALA----RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHh----CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 49999999999999998 478999999999997653 245999999997 6888888887 766422111223478
Q ss_pred Hhhhc--CCcce-EEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560 97 YYTRG--DYIPG-IWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS 145 (355)
Q Consensus 97 ~~~~A--~G~~~-~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~ 145 (355)
|.+.| +|+++ .+|+ ++.++.+++++|+ +.++|+|||+.+.+..
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~~~~~~ 166 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKAL----AADGPAFIEVKVRPGS 166 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCC
Confidence 88874 79987 5786 6888877777765 4578999999997544
No 70
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=5.1e-16 Score=162.37 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=102.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|.|+|+++| .|+++||+++|||++++.. ..|.||++++||+++||.||+
T Consensus 406 ~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~~--~eL~Ta~r~~lpv~ivV~NN~~ 479 (574)
T PRK06466 406 QYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA----FPDQDVACVTGEGSIQMNI--QELSTCLQYGLPVKIINLNNGA 479 (574)
T ss_pred HhccccCCCcEEcCCCcchhhchHHHHHHHHHh----CCCCeEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence 567777887777778889999999999999998 4799999999999987642 349999999999999999887
Q ss_pred Ccceeec---------c-cc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------E-RS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~-~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... . .. ...+||.+. |+|+++.+|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 480 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 480 LGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred cHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 7763211 0 11 124788887 4799999997 577887777776642 2789999999864
No 71
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.66 E-value=9e-16 Score=137.62 Aligned_cols=116 Identities=20% Similarity=0.121 Sum_probs=87.8
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-----
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER----- 90 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~----- 90 (355)
.++|+||+++|.|+|+++|. |+++||+++|||++.+.. .++|.+|+++++|+++||.||+ |++......
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 46899999999999999984 689999999999986532 4669999999999999998887 665332111
Q ss_pred ----cCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 91 ----SSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 91 ----~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
....+||.++ ++|+++++| +..|..++.+++++|+ +.++|+||++..
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~----~~~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEAL----AVPGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 1123688886 479999999 5566655556666655 468999999864
No 72
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.66 E-value=1.1e-15 Score=160.54 Aligned_cols=137 Identities=22% Similarity=0.230 Sum_probs=107.8
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcce------e
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMG------T 86 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~------~ 86 (355)
.+...++|++|.+|++|+|+|+|.++++.+..|+|++|||++++|..||||+.|+..+-++|+|++||+..+. .
T Consensus 170 ~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g 249 (641)
T PLN02234 170 EHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDG 249 (641)
T ss_pred CCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCC
Confidence 3555678999999999999999999999999999999999999999999999999777779999999987321 1
Q ss_pred eccccCC----------C-----ccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 87 SAERSSA----------S-----TDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 87 ~~~~~~~----------~-----~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
+...... . .+...+ ++||.++ .|||||.+++.++++++.+ ....+|++|.+.|.+.+|.+
T Consensus 250 ~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~--~~~~~P~vI~~~T~KGkGv~ 327 (641)
T PLN02234 250 PTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKS--TKTIGPVLIHVVTEKGRGYP 327 (641)
T ss_pred CCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHh--cCCCCCEEEEEEEecCCCcc
Confidence 1111000 0 122222 6799999 9999999999888876532 12358999999999999887
Q ss_pred CCC
Q psy14560 149 MSD 151 (355)
Q Consensus 149 ~~D 151 (355)
..+
T Consensus 328 ~~E 330 (641)
T PLN02234 328 YAE 330 (641)
T ss_pred hhh
Confidence 543
No 73
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.66 E-value=4e-16 Score=162.05 Aligned_cols=128 Identities=14% Similarity=0.034 Sum_probs=99.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.....++.|+||+++|.|+|+++| .|+++|||++|||++++.. .+|.||+++++|+++||+||+
T Consensus 387 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~EL~Ta~~~~lpi~~vV~NN~~ 460 (539)
T TIGR03393 387 ADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA----CPNRRVILLIGDGSAQLTI--QELGSMLRDKQHPIILVLNNEG 460 (539)
T ss_pred hhccCCCCCeEEechhhhhhhhHHHHHHHHHhc----CCCCCeEEEEcCcHHHhHH--HHHHHHHHcCCCCEEEEEeCCc
Confidence 456666776666677889999999999999998 5899999999999987742 449999999999999998887
Q ss_pred Ccceeecc------ccCCCccHhhhc--CCcc----eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 82 YGMGTSAE------RSSASTDYYTRG--DYIP----GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 82 ~~~~~~~~------~~~~~~d~~~~A--~G~~----~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
|++..... .....+||.+.| +|++ +++|+ +.+++.+++++|+ +.++|+|||+.+.
T Consensus 461 y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i~ 527 (539)
T TIGR03393 461 YTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSLIEVVLP 527 (539)
T ss_pred eEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh----ccCCeEEEEEEcC
Confidence 87643211 112347888874 6775 78996 5777766666654 5689999999885
No 74
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.65 E-value=5.1e-16 Score=144.11 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=99.9
Q ss_pred CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHH---HHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQN---FEAYNIAKLWGIP-CIYVCENNGYGMG 85 (355)
Q Consensus 10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~---~EaL~~Aa~~~LP-vi~Vv~NN~~~~~ 85 (355)
+...++...+|.||++++.|+|+++ ++++.+|+|++|||++++|.+ |++..++..+++. |+.|+.||+|.++
T Consensus 52 ~~tpGi~~~~G~LG~gLs~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~ 127 (227)
T cd02011 52 PETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIS 127 (227)
T ss_pred ccCCCeeecccchhhHHHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCccc
Confidence 4566788889999999999999975 478999999999999999986 8888888888888 8888889999999
Q ss_pred eecccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHH
Q psy14560 86 TSAERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYAS 129 (355)
Q Consensus 86 ~~~~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar 129 (355)
++.... .+..++.++ ++|++.+.|||+|++++++++++|+++++
T Consensus 128 ~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 128 NPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred CCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 988754 345677776 68999999999999999999998888654
No 75
>PRK06163 hypothetical protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=140.34 Aligned_cols=114 Identities=23% Similarity=0.280 Sum_probs=88.2
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc-CCCEEEEEEeCC-Ccceeecc-ccCCC
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW-GIPCIYVCENNG-YGMGTSAE-RSSAS 94 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~-~LPvi~Vv~NN~-~~~~~~~~-~~~~~ 94 (355)
.+|+||+++|+|+|+++| .|+++|||++|||++++.. ..|.|++++ ++|+++||.||+ |++..... .....
T Consensus 55 ~~GsMG~glpaAiGaalA----~p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~ 128 (202)
T PRK06163 55 MLGSMGLAFPIALGVALA----QPKRRVIALEGDGSLLMQL--GALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQT 128 (202)
T ss_pred eecccccHHHHHHHHHHh----CCCCeEEEEEcchHHHHHH--HHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCC
Confidence 379999999999999998 4889999999999976532 348899887 689999999996 87632211 11234
Q ss_pred ccHhhh--cCCcc-eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 95 TDYYTR--GDYIP-GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 95 ~d~~~~--A~G~~-~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
+||.+. |+|++ +++|+ +..++..++++++ +.++|+|||+.+.+
T Consensus 129 ~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~ 174 (202)
T PRK06163 129 VDVVAIARGAGLENSHWAA--DEAHFEALVDQAL----SGPGPSFIAVRIDD 174 (202)
T ss_pred CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 789887 47998 67886 6778877777765 45899999999864
No 76
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.65 E-value=6.8e-16 Score=162.22 Aligned_cols=130 Identities=24% Similarity=0.187 Sum_probs=101.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc-----CCCEEEEE
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW-----GIPCIYVC 77 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~-----~LPvi~Vv 77 (355)
+++++..|......+++|+||+++|.|+|+++| .|+++|||++|||++++....| |.||+++ +||+++||
T Consensus 398 ~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV 472 (597)
T PRK08273 398 RDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA----HPDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLV 472 (597)
T ss_pred HhCCCCCCCeEEecCccccccchHHHHHHHHHh----CCCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEE
Confidence 456677777777778889999999999999998 4799999999999986642233 8999999 89999999
Q ss_pred EeCC-Ccceeec------------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 78 ENNG-YGMGTSA------------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 78 ~NN~-~~~~~~~------------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
+||+ |++.... ....+.+||.+. ++|+++++|+ +++++.+++++|+ +.++|+|||+.+.
T Consensus 473 ~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~~~ 546 (597)
T PRK08273 473 LNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEAL----AADRPVVLEVKTD 546 (597)
T ss_pred EeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence 9997 7653211 011134678887 4799999997 5777777777665 4589999999986
Q ss_pred e
Q psy14560 143 R 143 (355)
Q Consensus 143 R 143 (355)
+
T Consensus 547 ~ 547 (597)
T PRK08273 547 P 547 (597)
T ss_pred C
Confidence 4
No 77
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.65 E-value=8.2e-16 Score=161.08 Aligned_cols=129 Identities=24% Similarity=0.234 Sum_probs=99.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++....|+.....+..|+||+++|.|+|+++| .|+++|||++|||+++++ ..| |.||+++++|+++||+||+
T Consensus 391 ~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la----~p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~ 464 (578)
T PRK06546 391 RYITPNGRRRVIGSFRHGSMANALPHAIGAQLA----DPGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNST 464 (578)
T ss_pred HhcCCCCCceEEccCCcccccchhHHHHHHHHh----CCCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCc
Confidence 345555565555566789999999999999998 478999999999998764 334 8999999999999999998
Q ss_pred Ccceee---------ccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTS---------AERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~---------~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++... .......+||.++| +|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 465 ~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~ 531 (578)
T PRK06546 465 LGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAF----AHPGPALVDVVTDP 531 (578)
T ss_pred cccHHHHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 676320 01123457898874 799999997 6888877777765 46899999999864
No 78
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.4e-15 Score=156.46 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=113.2
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhc-----CC-----CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYK-----GT-----GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~-----~~-----~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
+.++..++|+||+|++.|+|.|+|.+.. +| |.-++|++|||.+++|..+|+..+|..++|. +|++..+|
T Consensus 108 t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N 187 (663)
T COG0021 108 TPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSN 187 (663)
T ss_pred CCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCC
Confidence 4567788999999999999999998763 22 4689999999999999999999999999998 77788899
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
+++|.......+ ..|..+| |+||.++ .+||+|++++.+|+++|.+ ..++|++|+|+|.-.+|-..
T Consensus 188 ~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 188 DISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred CceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCC
Confidence 999987766655 5778776 8999999 7799999998888777654 26799999999987766544
No 79
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.65 E-value=7.2e-16 Score=163.18 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=105.9
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cc-------
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GM------- 84 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~------- 84 (355)
.+..-++|++|.+++.|+|+|+|.++++.+..|+|++|||++++|.+||+|+.|+.+++|+++||+||++ ++
T Consensus 137 ~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s 216 (677)
T PLN02582 137 EYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDG 216 (677)
T ss_pred CCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCC
Confidence 3445678999999999999999999999999999999999999999999999999999999999999986 33
Q ss_pred -eeecccc-------CCCc---------------------cHhh------------------hcCCcceE-EEeCCCHHH
Q psy14560 85 -GTSAERS-------SAST---------------------DYYT------------------RGDYIPGI-WVDGMDVLA 116 (355)
Q Consensus 85 -~~~~~~~-------~~~~---------------------d~~~------------------~A~G~~~~-~VdG~D~~~ 116 (355)
+...... ...+ .+.+ .++|+.++ .|||||..+
T Consensus 217 ~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~ 296 (677)
T PLN02582 217 PAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDD 296 (677)
T ss_pred CCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHH
Confidence 1111000 0000 0100 13689977 999999998
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560 117 VREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 117 v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~ 150 (355)
+.++++++.+. ..++|++|++.|.+.+|+...
T Consensus 297 L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 297 LVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 88887766431 126899999999999988754
No 80
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.65 E-value=8.1e-16 Score=160.07 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=100.6
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCC-CCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGT-GGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~ 81 (355)
++++...|+.....++.|+||+++|.|+|+++| .| +++|||++|||++.+.. .+|.||++++||+++||.||+
T Consensus 379 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~~Vv~i~GDGsf~~~~--~eL~Ta~~~~lpi~ivV~NN~ 452 (549)
T PRK06457 379 RHFRASGEQTFIFSAWLGSMGIGVPGSVGASFA----VENKRQVISFVGDGGFTMTM--MELITAKKYDLPVKIIIYNNS 452 (549)
T ss_pred HhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhc----CCCCCeEEEEEcccHHhhhH--HHHHHHHHHCCCeEEEEEECC
Confidence 456666776667677889999999999999998 46 89999999999986642 348999999999999999887
Q ss_pred -Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 -YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 -~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ......+||.+. ++|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 453 ~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~ 520 (549)
T PRK06457 453 KLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFL----NTKGPAVLDAIVDP 520 (549)
T ss_pred ccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 7753210 111235789887 4799999997 5778877777765 46889999999864
No 81
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.65 E-value=1e-15 Score=138.00 Aligned_cols=111 Identities=25% Similarity=0.270 Sum_probs=86.2
Q ss_pred CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcC-CCEEEEEEeCC-CcceeeccccC-CCc
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWG-IPCIYVCENNG-YGMGTSAERSS-AST 95 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~-LPvi~Vv~NN~-~~~~~~~~~~~-~~~ 95 (355)
+|+||+++|+|+|+++| . +++|||++|||++.++. ++|.+|++++ +|+++||.||+ |++........ ..+
T Consensus 41 ~gsmG~~lpaAiGa~la----~-~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALA----T-DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHc----C-CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 79999999999999998 3 78899999999987643 4589999999 59999999888 77753211111 257
Q ss_pred cHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 96 DYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 96 d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
||++. |+|+++.+ |+ +++++.++++ + ++.++|+|||+.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a----~~~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-A----LAMKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-H----HcCCCCEEEEEEeCC
Confidence 88886 47999988 75 5777766664 4 346899999999863
No 82
>PRK07586 hypothetical protein; Validated
Probab=99.65 E-value=6.6e-16 Score=159.34 Aligned_cols=126 Identities=22% Similarity=0.229 Sum_probs=95.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+++.... .|+||+++|.|+|+++| .|+++|||++|||++++.. .+|.||++++||+++||.||+
T Consensus 369 ~~~~~~~~~~~~~~~-~g~mG~~lpaaiGa~lA----~p~r~Vv~i~GDGsf~m~~--~EL~Ta~~~~lpv~ivV~NN~~ 441 (514)
T PRK07586 369 PATAGAAPHDWLTLT-GGAIGQGLPLATGAAVA----CPDRKVLALQGDGSAMYTI--QALWTQARENLDVTTVIFANRA 441 (514)
T ss_pred HhccccCCCCEEccC-CcccccHHHHHHHHHHh----CCCCeEEEEEechHHHhHH--HHHHHHHHcCCCCEEEEEeCch
Confidence 456667776665443 49999999999999998 4799999999999987742 459999999999999998887
Q ss_pred Ccceeec-----c----------ccC--CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSA-----E----------RSS--ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~-----~----------~~~--~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++.... . ... +.+||.+. |+|+++++|+ ++.++.+++++|+ +.++|+|||+.+
T Consensus 442 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~----~~~~p~liev~~ 514 (514)
T PRK07586 442 YAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAAL----AEPGPHLIEAVV 514 (514)
T ss_pred hHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 8764210 0 011 23688887 4799999997 5777766666655 468999999863
No 83
>PRK08322 acetolactate synthase; Reviewed
Probab=99.65 E-value=9.9e-16 Score=159.10 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=101.4
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+.....++.|+||+++|.|+|+++| .|+++||+++|||++.+.. .+|.||+++++|+++||.||+
T Consensus 389 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~iiV~NN~~ 462 (547)
T PRK08322 389 RNYRAYEPNTCLLDNALATMGAGLPSAIAAKLV----HPDRKVLAVCGDGGFMMNS--QELETAVRLGLPLVVLILNDNA 462 (547)
T ss_pred HhcccCCCCCEEcCCCcccccchhHHHHHHHHh----CCCCcEEEEEcchhHhccH--HHHHHHHHhCCCeEEEEEeCCC
Confidence 456677787777777889999999999999998 4889999999999987643 349999999999999998887
Q ss_pred Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ......+||.+. ++|+++++|+ +++++.+++++++ +.++|+|||+.+.+
T Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~ 529 (547)
T PRK08322 463 YGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEAL----AQPGVHVIDCPVDY 529 (547)
T ss_pred cchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 7764210 111235789887 4799999997 5778877777765 45899999999864
No 84
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.64 E-value=8.2e-16 Score=160.74 Aligned_cols=130 Identities=22% Similarity=0.245 Sum_probs=101.6
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|.|+|+++| .|+++||+++|||++.+.. ++|.||+++++|+++||.||+
T Consensus 404 ~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lpv~~vV~NN~~ 477 (574)
T PRK06882 404 LHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFA----HPEATVVCVTGDGSIQMNI--QELSTAKQYDIPVVIVSLNNRF 477 (574)
T ss_pred HhccccCCCcEEeCCCcccccchhHHHHHHHhh----cCCCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEECch
Confidence 456777787777777889999999999999998 4788999999999987752 559999999999999999998
Q ss_pred Ccceeec----------ccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ... ...+||.++ |+|+++++|+ +.+++.+++++|++. .++|+|||+.+.+
T Consensus 478 ~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 478 LGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred hHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 6643210 111 124688886 5799999997 577777777776642 3789999999974
No 85
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.64 E-value=1.2e-16 Score=154.25 Aligned_cols=106 Identities=40% Similarity=0.608 Sum_probs=96.2
Q ss_pred cchhHHHHHHHH---hh----hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccCCCC
Q psy14560 158 DPITSFKEKMLN---SE----LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKG 230 (355)
Q Consensus 158 DpIr~fee~Li~---~G----l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~ 230 (355)
-.+|.|++++.+ +| .+....+||+.+++...+|++.||++++||+|++.+++|+++.++|+|++|+.+|+++
T Consensus 6 ~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~- 84 (293)
T cd02000 6 VLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKETGPCK- 84 (293)
T ss_pred HHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCC-
Confidence 356899998765 33 3677899999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560 231 KGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 231 ~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
|||||||+.+ .|+++.++++|.|+|.|+...++.
T Consensus 85 -----------G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~ 120 (293)
T cd02000 85 -----------GRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120 (293)
T ss_pred -----------CCCCCCCCCchhcCccccccccccchhHHHHHHHHH
Confidence 9999999986 799999999999999999886664
No 86
>PRK08266 hypothetical protein; Provisional
Probab=99.64 E-value=9.7e-16 Score=159.09 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=100.9
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
++++..|+.....+..|+||+++|.|+|++++ .|+++|||++|||+++++ .++|.||++++||+++||.||+ |
T Consensus 386 ~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y 459 (542)
T PRK08266 386 AFPVYAPRTFVTCGYQGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAY 459 (542)
T ss_pred hcccCCCCcEEeCCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcc
Confidence 45566676665666789999999999999887 578999999999998886 2569999999999999999886 8
Q ss_pred cceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560 83 GMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG 146 (355)
Q Consensus 83 ~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G 146 (355)
++..... .....+||.++ |+|+++++|+. .+++.+++++++ +.++|+|||+.++|...
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~liev~i~~~~~ 529 (542)
T PRK08266 460 GNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDS--PEELRAALEAAL----AHGGPVLIEVPVPRGSE 529 (542)
T ss_pred hHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCcEEEEEEecCCCC
Confidence 7642111 11234688887 47999999984 667766666654 46789999999986543
No 87
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.64 E-value=1.3e-15 Score=158.93 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=102.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|.|+|+++| .|+++||+++|||++++. +.| |.||+++++|+++||.||+
T Consensus 402 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~ 475 (564)
T PRK08155 402 QAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALA----NPERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEA 475 (564)
T ss_pred HhccccCCCeEEeCCCcccccchhHHHHHHHHh----CCCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCc
Confidence 467777887777777889999999999999998 478999999999998774 455 8999999999999999998
Q ss_pred Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ..+||++. |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 476 ~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~~~~ 544 (564)
T PRK08155 476 LGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAI----NRPGPALIHVRIDA 544 (564)
T ss_pred ccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 8774321 0111 34688887 4799999997 4677777666665 46789999999864
No 88
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.64 E-value=7.5e-16 Score=162.48 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=98.0
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
+++ ..|+++...+++|+||+++|.|+|+++| .|+++||+++|||++++. .. .|.||++++||+++||+||+ |
T Consensus 419 ~~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~-~~-eL~Ta~r~~lpvi~vV~NN~~~ 491 (616)
T PRK07418 419 FLR-NGPRRWISSAGLGTMGFGMPAAMGVKVA----LPDEEVICIAGDASFLMN-IQ-ELGTLAQYGINVKTVIINNGWQ 491 (616)
T ss_pred hhh-cCCCeEEcCCCccccccHHHHHHHHHHh----CCCCcEEEEEcchHhhhh-HH-HHHHHHHhCCCeEEEEEECCcc
Confidence 444 4576666667889999999999999998 489999999999998764 23 49999999999999999998 6
Q ss_pred cceeecc----------ccC--CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 83 GMGTSAE----------RSS--ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 83 ~~~~~~~----------~~~--~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
++..... ... ..+||++. |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.
T Consensus 492 g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~----~~~~p~lIeV~i~ 559 (616)
T PRK07418 492 GMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEAL----AHDGPVLIDVHVR 559 (616)
T ss_pred hHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 6532110 011 24788887 4799999997 6777777776665 4678999999985
No 89
>PRK08617 acetolactate synthase; Reviewed
Probab=99.64 E-value=1.1e-15 Score=159.07 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=101.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+...+.++.|+||+++|.|+|+++| .|+++|||++|||++++.. .+|.||+++++|+++||.||+
T Consensus 397 ~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~~vV~NN~~ 470 (552)
T PRK08617 397 RYFRSYEPRHLLFSNGMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFSA--MELETAVRLKLNIVHIIWNDGH 470 (552)
T ss_pred HhccccCCCeEEecCccccccccccHHHhhHhh----cCCCcEEEEEechHHhhhH--HHHHHHHHhCCCeEEEEEECCc
Confidence 456667787777777889999999999999998 4889999999999987643 349999999999999999887
Q ss_pred Ccceeec-----c----ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 82 YGMGTSA-----E----RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 82 ~~~~~~~-----~----~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
|++.... . .....+||.+.| +|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+.
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~liev~~~~~ 538 (552)
T PRK08617 471 YNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL----ATDGPVVIDIPVDYS 538 (552)
T ss_pred cchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEeccc
Confidence 7763211 0 112347888874 799999997 5777777776665 467899999998753
No 90
>PLN02470 acetolactate synthase
Probab=99.64 E-value=1.1e-15 Score=160.22 Aligned_cols=129 Identities=23% Similarity=0.283 Sum_probs=101.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++...+++|+||+++|.|+|+++| .|+++|||++|||++++.. .+|.||++++||+++||.||+
T Consensus 409 ~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~ 482 (585)
T PLN02470 409 QWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQH 482 (585)
T ss_pred HhcccCCCCeEEcCCccccccchHHHHHHHHHh----CCCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence 466777887777778889999999999999998 4789999999999987753 349999999999999999887
Q ss_pred Ccceeec----------cccCC--------CccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSA----------ERSSA--------STDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~----------~~~~~--------~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++.... ..... .+||.+. |+|+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 483 yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i 556 (585)
T PLN02470 483 LGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIV 556 (585)
T ss_pred chHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 7653210 00111 2688887 4799999997 57788777777653 57899999998
Q ss_pred ee
Q psy14560 142 YR 143 (355)
Q Consensus 142 ~R 143 (355)
.+
T Consensus 557 ~~ 558 (585)
T PLN02470 557 PH 558 (585)
T ss_pred CC
Confidence 64
No 91
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.63 E-value=1.5e-15 Score=158.54 Aligned_cols=129 Identities=24% Similarity=0.283 Sum_probs=101.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++.+|.++...+++|+||+++|.|+|+++| .|+++||+++|||++++.. .+|.||+++++|+++||.||+
T Consensus 397 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~ 470 (561)
T PRK06048 397 QYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG----KPDKTVIDIAGDGSFQMNS--QELATAVQNDIPVIVAILNNGY 470 (561)
T ss_pred HhcccCCCCeEEeCCCccccccHHHHHHHHHHh----CCCCcEEEEEeCchhhccH--HHHHHHHHcCCCeEEEEEECCc
Confidence 466677787777777789999999999999998 4789999999999987753 349999999999999999887
Q ss_pred Ccceeec----------ccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ... .+.+||.+. |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 471 y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~----~~~~p~liev~~~~ 539 (561)
T PRK06048 471 LGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAV----ASDRPVVIDFIVEC 539 (561)
T ss_pred cHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 7653210 011 135789887 4799999997 4777777777665 46899999999864
No 92
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.63 E-value=1.5e-15 Score=158.72 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=100.8
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|.+....++.|+||+++|.|+|+++| .|+++||+++|||++.+.. .+|.||++++||+++||.||+
T Consensus 404 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~ 477 (572)
T PRK06456 404 VFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRT 477 (572)
T ss_pred HhcCcCCCCcEEcCCCcccccchhHHHHHHHHh----CCCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCc
Confidence 345667787777777889999999999999998 4789999999999976653 349999999999999999998
Q ss_pred Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ..+||.+. |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 478 yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~ 546 (572)
T PRK06456 478 LGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAI----KEDIPAVIRVPVDK 546 (572)
T ss_pred hHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 7764311 0011 24688887 4799999996 5777777766655 46899999999975
No 93
>PRK08611 pyruvate oxidase; Provisional
Probab=99.63 E-value=1.6e-15 Score=158.86 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=100.5
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|.......+.|+||+++|.|+|++++ .|+++||+++|||++.+. . .+|.||+++++|+++||.||+
T Consensus 391 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDGsf~m~-~-~eL~Ta~r~~l~~iivV~NN~~ 464 (576)
T PRK08611 391 RYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIA----FPDRQAIAICGDGGFSMV-M-QDFVTAVKYKLPIVVVVLNNQQ 464 (576)
T ss_pred hcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHh----CCCCcEEEEEcccHHhhh-H-HHHHHHHHhCCCeEEEEEeCCc
Confidence 466777776666667789999999999999998 478999999999998774 2 448999999999999998887
Q ss_pred Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ......+||.+. ++|+++.+|+ +++++.+++++++ +.++|+|||+.+.+
T Consensus 465 ~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~vd~ 531 (576)
T PRK08611 465 LAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEAL----AQDKPVIIDVYVDP 531 (576)
T ss_pred chHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 7753210 112235789887 4799999996 5777777766655 46899999999964
No 94
>KOG0451|consensus
Probab=99.63 E-value=1.1e-15 Score=153.94 Aligned_cols=182 Identities=19% Similarity=0.215 Sum_probs=148.1
Q ss_pred ccCCCCCccccCCcccccchHHHHHHHHHHHhcC------C--------CCeEEEEeCccc-ccccHHHHHHHHHHHc--
Q psy14560 7 VINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKG------T--------GGVCFALYGDGA-SNQGQNFEAYNIAKLW-- 69 (355)
Q Consensus 7 ~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~------~--------~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~-- 69 (355)
...+-...+.++.+++....|+|+|-+.+++... | ....|.++||++ .++|.++|+++++-..
T Consensus 270 ~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHF 349 (913)
T KOG0451|consen 270 LGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHF 349 (913)
T ss_pred cCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCce
Confidence 3445555667788999999999999999877542 2 224567889999 5899999999985322
Q ss_pred CCC-EEEEEEeCCCcceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560 70 GIP-CIYVCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG 146 (355)
Q Consensus 70 ~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G 146 (355)
++- -+++|.||+.+++++..+..+....+++| .++|+++|+|.||++|.+|.+-|+++-|++++.++|++.++|..|
T Consensus 350 rvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwg 429 (913)
T KOG0451|consen 350 RVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWG 429 (913)
T ss_pred eecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhc
Confidence 222 79999999999999887776655555554 599999999999999999999999999999999999999999999
Q ss_pred CCCCCCCc-----cee-----c-chhHHHHHHHHhhhhhhhhHHHHHHhhHHH
Q psy14560 147 HSMSDPGT-----SFR-----D-PITSFKEKMLNSELATVDELKEACAVGMRA 188 (355)
Q Consensus 147 Hs~~D~~~-----~YR-----D-pIr~fee~Li~~Gl~t~~e~qEa~qvg~~~ 188 (355)
|++-|++. +|+ . .-+.|.++|++.|++++++..|+.++..+.
T Consensus 430 Hnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~ 482 (913)
T KOG0451|consen 430 HNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKY 482 (913)
T ss_pred cccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 99988776 343 2 226788999999999999999999887544
No 95
>PLN02573 pyruvate decarboxylase
Probab=99.63 E-value=1.4e-15 Score=159.48 Aligned_cols=124 Identities=19% Similarity=0.081 Sum_probs=95.4
Q ss_pred CCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceee
Q psy14560 9 NPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTS 87 (355)
Q Consensus 9 ~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~ 87 (355)
.+......+++|+||+++|.|+|+++| .|+++||+++|||++++.. .+|.||++++||+++||.||+ |++...
T Consensus 417 ~~~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~vv~i~GDG~f~m~~--~EL~Ta~r~~lpvv~vV~NN~~yg~~~~ 490 (578)
T PLN02573 417 EGCGYEFQMQYGSIGWSVGATLGYAQA----APDKRVIACIGDGSFQVTA--QDVSTMIRCGQKSIIFLINNGGYTIEVE 490 (578)
T ss_pred CCCeEEeecchhhhhhhhhHHHHHHHh----CCCCceEEEEeccHHHhHH--HHHHHHHHcCCCCEEEEEeCCceeEEEe
Confidence 343444567789999999999999998 4789999999999987743 349999999999999999888 887542
Q ss_pred cc----ccCCCccHhhhc--CC-----cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 88 AE----RSSASTDYYTRG--DY-----IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 88 ~~----~~~~~~d~~~~A--~G-----~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.. .....+||.++| +| +++.+|+ +++++.+++++|++. +.++|+|||+.+.
T Consensus 491 ~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 491 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred ecccCccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 21 112347888874 43 8899998 477887777777632 2588999999885
No 96
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.63 E-value=1.8e-15 Score=158.03 Aligned_cols=129 Identities=24% Similarity=0.210 Sum_probs=101.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++...+++|+||+++|.|+|+++| .|+++|||++|||++++. ..| |.||++++||+++||.||+
T Consensus 397 ~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la----~p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~ 470 (563)
T PRK08527 397 QFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA----VPDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNF 470 (563)
T ss_pred HhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCc
Confidence 466777887777778889999999999999998 478899999999998774 344 9999999999999999887
Q ss_pred Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ..+||.++ ++|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 471 ~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lieV~v~~ 539 (563)
T PRK08527 471 LGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEAL----ESDKVALIDVKIDR 539 (563)
T ss_pred chhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence 6653211 0111 24688887 4799999997 5777777766665 46889999999975
No 97
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.63 E-value=1.8e-15 Score=157.29 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=101.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++...++.|+||+++|.|+|+++| .|+++||+++|||++++.. .+|.||+++++|+++||.||+
T Consensus 384 ~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~ 457 (548)
T PRK08978 384 QHMRFTRPENFITSSGLGTMGFGLPAAIGAQVA----RPDDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQR 457 (548)
T ss_pred HhcccCCCCeEEeCCchhhhhchHHHHHHHHHh----CCCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence 466777887777777889999999999999998 4789999999999987643 349999999999999999887
Q ss_pred Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ..+||.+. |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~id~ 526 (548)
T PRK08978 458 LGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLL----NSEGPYLLHVSIDE 526 (548)
T ss_pred cHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 7653211 0111 34788887 4799999996 5777777766665 46789999999975
No 98
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.63 E-value=2.2e-16 Score=159.50 Aligned_cols=108 Identities=31% Similarity=0.519 Sum_probs=96.7
Q ss_pred cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560 155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT 225 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~ 225 (355)
+|| -.+|.|++++.+ + |.++...+||+++++...+|+++||++++||+|++.+++|+++.++|+|++|+.+
T Consensus 91 lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~ 170 (433)
T PLN02374 91 LYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 170 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHHHHHHcCCCC
Confidence 466 456999998765 2 3466788999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560 226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS 274 (355)
Q Consensus 226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~ 274 (355)
|+++ |||||||+.+ +|+++.+++||.|+|+|+.--++
T Consensus 171 g~~~------------GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A 209 (433)
T PLN02374 171 GCCR------------GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFS 209 (433)
T ss_pred CCCC------------CCCCcCccCchhhCCCCCceeccCchhHHHHHHHH
Confidence 9987 9999999986 79999999999999999976444
No 99
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.63 E-value=1.4e-15 Score=158.55 Aligned_cols=129 Identities=24% Similarity=0.295 Sum_probs=100.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|.|+|+++| .|+++||+++|||++.+. +. +|.||+++++|+++||.||+
T Consensus 395 ~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la----~~~~~vv~~~GDG~f~~~-~~-eL~ta~~~~l~~~~vv~NN~~ 468 (558)
T TIGR00118 395 QFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA----KPESTVICITGDGSFQMN-LQ-ELSTAVQYDIPVKILILNNRY 468 (558)
T ss_pred HhcccCCCCeEEeCCccccccchhhHHHhhhhh----CCCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCeEEEEEeCCc
Confidence 466777787777777889999999999999988 478999999999998774 33 49999999999999999998
Q ss_pred Ccceee----------cc-ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTS----------AE-RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~----------~~-~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++... .. .....+||.++ |+|+++++|+. ++++.+++++|+ +.++|+|||+.+.+
T Consensus 469 ~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~----~~~~p~liev~~~~ 537 (558)
T TIGR00118 469 LGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEAL----SSNEPVLLDVVVDK 537 (558)
T ss_pred hHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 554320 01 11124789887 47999999985 677777777665 35899999999964
No 100
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.62 E-value=2.2e-15 Score=156.94 Aligned_cols=128 Identities=21% Similarity=0.180 Sum_probs=99.4
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.....+++|+||+++|.|+|+++| ++++||+++|||++++.. .| |.||+++++|+++||.||+
T Consensus 400 ~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~~-~E-L~Ta~r~~l~v~~vV~NN~~ 472 (554)
T TIGR03254 400 NVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFSG-ME-VETICRYNLPVCVVIFNNGG 472 (554)
T ss_pred HhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhcccH-HH-HHHHHHcCCCEEEEEEeChh
Confidence 356778887777777789999999999999997 378999999999987753 33 9999999999999999998
Q ss_pred Ccce--e------eccccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMG--T------SAERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~--~------~~~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|... . ...... +.+||+++ |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~id~ 539 (554)
T TIGR03254 473 IYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEAL----ASGKPTLINAVIDP 539 (554)
T ss_pred hhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence 4211 0 001111 35788887 5799999997 5778877777765 45789999999864
No 101
>PRK07064 hypothetical protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=157.51 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=97.6
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+..... +.|+||+++|.|+|+++| .|+++||+++|||++++.. .+|.||++++||+++||.||+
T Consensus 389 ~~~~~~~p~~~~~~-~~g~mG~~lpaAiGa~lA----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~ 461 (544)
T PRK07064 389 RLLPIFEPRANVHA-LGGGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLMLNL--GELATAVQENANMVIVLMNDGG 461 (544)
T ss_pred HhcCccCCCceecc-CCCccccccchhhhhhhh----CcCCcEEEEEcchHhhhhH--HHHHHHHHhCCCeEEEEEeCCh
Confidence 45667777554443 348999999999999998 4789999999999987643 349999999999999999887
Q ss_pred Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
|++.... ......+||.+. |+|+++.+|+ +++++.+++++|+ +.++|+|||+.++
T Consensus 462 yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~~~ 528 (544)
T PRK07064 462 YGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREAL----AKEGPVLVEVDML 528 (544)
T ss_pred hHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEcc
Confidence 7764211 112235789887 4799999997 5777777777665 4678999999985
No 102
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.62 E-value=2.6e-15 Score=140.78 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=89.8
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER 90 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~ 90 (355)
..+.+..++||+++|.|+|++++ .|+++|||+.|||++ .++ + .+|.+|+++++|+++||.||+ |++......
T Consensus 55 ~~~~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~-~-~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~ 128 (235)
T cd03376 55 HVAFENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG-F-QALSGAAERGHDILYICYDNEAYMNTGIQRS 128 (235)
T ss_pred ehhhcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH-H-HHHHHHHHcCCCeEEEEECCcccccCCCCCC
Confidence 44445568999999999998766 589999999999995 554 3 449999999999999999998 774211000
Q ss_pred ---------------------cCCCccHhhhc--CCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 91 ---------------------SSASTDYYTRG--DYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 91 ---------------------~~~~~d~~~~A--~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
....+||.++| +|++++. ++-.+++++.+++++|++ .++|+|||+.+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~ 200 (235)
T cd03376 129 GSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSP 200 (235)
T ss_pred CCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 11336888874 6988863 455678888887777764 578999999764
No 103
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.62 E-value=4.6e-15 Score=135.02 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=86.9
Q ss_pred ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc---
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER--- 90 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~--- 90 (355)
....++||+++|+|+|+++| .|+++||++.|||+ ++++ . .+|.+|+++++|+++||.||+ |++......
T Consensus 47 ~~~~g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f~m~-~-~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~ 120 (193)
T cd03375 47 YGFHTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIG-G-NHFIHAARRNIDITVIVHNNQIYGLTKGQASPTT 120 (193)
T ss_pred cchhhhhccHHHHHHHHHHh----CCCCeEEEEeccchHhhcc-H-HHHHHHHHhCCCeEEEEEcCcccccCCCccCCCC
Confidence 33458999999999999998 58999999999999 4443 2 348999999999999999998 776432110
Q ss_pred -------------cCCCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 91 -------------SSASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 91 -------------~~~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
..+.+||.+.| +|++++ ++.-.++.++.+++++|++ .++|+|||+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~~ 184 (193)
T cd03375 121 PEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLSP 184 (193)
T ss_pred CCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEECC
Confidence 00135787764 688885 2233478888888887764 588999999753
No 104
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.61 E-value=2.4e-15 Score=157.78 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=96.6
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
+++. .|+++...++.|+||+++|.|+|+++| .|+++||+++|||++++.. .+|.||+++++|+++||.||+ |
T Consensus 415 ~~~~-~~~~~~~~~~~g~mG~glpaaiGaala----~p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~~~~vV~NN~~y 487 (585)
T CHL00099 415 FLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIA----HPNELVICISGDASFQMNL--QELGTIAQYNLPIKIIIINNKWQ 487 (585)
T ss_pred hccC-CCCcEEcCccccchhhhHHHHHHHHHh----CCCCeEEEEEcchhhhhhH--HHHHHHHHhCCCeEEEEEECCcc
Confidence 4443 466666677889999999999999998 4789999999999987642 349999999999999999998 6
Q ss_pred cceeec---------c-c--cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 83 GMGTSA---------E-R--SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 83 ~~~~~~---------~-~--~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
++.... . . ....+||.++ |+|+++.+|+ +++++.+++++|+ +.++|+|||+.+.
T Consensus 488 ~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~v~ 555 (585)
T CHL00099 488 GMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEAL----DYDGPVLIDCQVI 555 (585)
T ss_pred hHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEEC
Confidence 653211 0 0 1124688886 5799999997 4777766666655 4689999999996
No 105
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.61 E-value=2.3e-15 Score=157.58 Aligned_cols=129 Identities=26% Similarity=0.316 Sum_probs=96.1
Q ss_pred ccccccCCCC-CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560 3 QCMIVINPSP-KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG 81 (355)
Q Consensus 3 ~~~~~~~p~~-~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~ 81 (355)
++++...|.. +...+++|+||+++|.|+|+++| .|+++|||++|||++++ ..+.|++|+++++|+++||.||+
T Consensus 419 ~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~ 492 (578)
T PRK06112 419 NFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNG 492 (578)
T ss_pred HhcCccCCCceEECCCCccccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCC
Confidence 3444445542 33345679999999999999987 57899999999999865 34669999999999999999998
Q ss_pred -Ccceeeccc----------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 -YGMGTSAER----------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 -~~~~~~~~~----------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++...... ....+||.++ ++|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 493 ~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~ 561 (578)
T PRK06112 493 ILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM----AAPGPTLIEVITDP 561 (578)
T ss_pred ccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 665332110 1124688887 4799999997 4667766666654 46899999999864
No 106
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.61 E-value=1.9e-15 Score=157.91 Aligned_cols=128 Identities=21% Similarity=0.242 Sum_probs=100.1
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++.+|.++...+++|+||+++|.|+|+++| .|+++||+++|||++++.. ..|.||+++++|+++||.||+
T Consensus 401 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~ 474 (566)
T PRK07282 401 QYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHS 474 (566)
T ss_pred HhcccCCCCcEecCCccccccchhhHhheehee----cCCCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCC
Confidence 467777887777777889999999999999998 5899999999999987643 349999999999999999887
Q ss_pred Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ..+||++. |+|+++.+|+ ++.++.++++ ++ ..++|+|||+.+.+
T Consensus 475 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~----~~~~p~lIeV~v~~ 542 (566)
T PRK07282 475 LGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI----TEDVPMLIEVDISR 542 (566)
T ss_pred chHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh----cCCCCEEEEEEeCC
Confidence 7764311 1112 35789887 4799999997 5677766664 22 34789999999864
No 107
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.61 E-value=8.4e-15 Score=156.39 Aligned_cols=131 Identities=18% Similarity=0.065 Sum_probs=111.2
Q ss_pred cccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560 15 FYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT 86 (355)
Q Consensus 15 ~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~ 86 (355)
+..++|+||.|++.|+|.|++.|+ ...+..|+|++|||.++||++||++.+|++++|. +++||.+|...+..
T Consensus 184 ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG 263 (885)
T TIGR00759 184 WQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDG 263 (885)
T ss_pred EEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence 555789999999999999999996 5578899999999999999999999999999998 99999999988877
Q ss_pred eccccCC-CccHhhh--cCCcceEEE------------------------------------------------------
Q psy14560 87 SAERSSA-STDYYTR--GDYIPGIWV------------------------------------------------------ 109 (355)
Q Consensus 87 ~~~~~~~-~~d~~~~--A~G~~~~~V------------------------------------------------------ 109 (355)
+...... ..++.++ |+||.++.|
T Consensus 264 ~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~ 343 (885)
T TIGR00759 264 PVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKA 343 (885)
T ss_pred ccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHH
Confidence 6654322 2455553 789999999
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 110 ---------------DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 110 ---------------dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
+|||+.+|++|+..|.+. .++|++|.+.|...+|.+
T Consensus 344 lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 344 LVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEEEEEeeeecCCCC
Confidence 599999999998877642 357999999999888765
No 108
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.61 E-value=2e-15 Score=156.45 Aligned_cols=126 Identities=24% Similarity=0.301 Sum_probs=96.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|.++.. ..+|+||+++|.|+|++++ .|+++|||++|||+++++. ++|++|+++++|+++||.||+
T Consensus 391 ~~~~~~~~~~~~~-~~~g~mG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~ 463 (530)
T PRK07092 391 EHLPMRRQGSFYT-MASGGLGYGLPAAVGVALA----QPGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGR 463 (530)
T ss_pred HhcCcCCCCceEc-cCCCcccchHHHHHHHHHh----CCCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChH
Confidence 5666666755543 3469999999999999998 4789999999999988763 669999999999999999998
Q ss_pred Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++.... .......||.++ ++|+++.+|+ ++.++.+++++ +++.++|+|||+.+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~----a~~~~~p~liev~~ 529 (530)
T PRK07092 464 YGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALAR----ALAADGPVLVEVEV 529 (530)
T ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHH----HHhCCCCEEEEEEc
Confidence 8764211 112235788887 4799999998 46666555555 44578999999986
No 109
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.61 E-value=2.3e-15 Score=158.69 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=101.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|.|+|+++| .|+++|||++|||++.+.. .+|.||++++||+++||.||+
T Consensus 430 ~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~ivV~NN~~ 503 (612)
T PRK07789 430 QFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG----RPDKEVWAIDGDGCFQMTN--QELATCAIEGIPIKVALINNGN 503 (612)
T ss_pred HhcccCCCCeEEcCCCcccccchhhhHHhhhcc----CCCCcEEEEEcchhhhccH--HHHHHHHHcCCCeEEEEEECCc
Confidence 467777887777777889999999999999998 4789999999999987642 349999999999999999887
Q ss_pred Ccceeec----------cccC-----CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-----ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-----~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ..+||.+. |+|+++++|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 504 ~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 504 LGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred hHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 7753210 0011 13689887 4799999997 577887777777642 3689999999964
No 110
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.60 E-value=3.6e-15 Score=155.90 Aligned_cols=129 Identities=24% Similarity=0.304 Sum_probs=101.1
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+++...+++|+||+++|.|+|+++| .|+++||+++|||++.+. +.| |+||+++++|+++||.||+
T Consensus 407 ~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala----~p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~ 480 (571)
T PRK07710 407 QYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA----KPDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEA 480 (571)
T ss_pred HhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECch
Confidence 467777887777777889999999999999998 478999999999998764 444 9999999999999999887
Q ss_pred Ccceeec-----c------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA-----E------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~-----~------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... . .....+||++. |+|+++.+|+. .+++.+++++|+ +.++|+|||+.+.+
T Consensus 481 ~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lieV~vd~ 549 (571)
T PRK07710 481 LGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRIDD--ELEAKEQLQHAI----ELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 7763211 0 11134788887 47999999974 666666665554 56899999999974
No 111
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.59 E-value=8.3e-15 Score=153.16 Aligned_cols=128 Identities=21% Similarity=0.202 Sum_probs=98.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.....+++|+||+++|.|+|+++| ++++||+++|||++++. ..| |.||+++++|+++||+||+
T Consensus 407 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~ 479 (569)
T PRK09259 407 NIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGG 479 (569)
T ss_pred HhcccCCCCceEeCCCCccccccHHHHHHHHhc-----CCCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChh
Confidence 456777887776677789999999999999998 37889999999998774 233 9999999999999999998
Q ss_pred C--ccee------e-cccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 Y--GMGT------S-AERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~--~~~~------~-~~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
| .... . .... .+.+||+++ |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~id~ 547 (569)
T PRK09259 480 IYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAI----ASGKPTLINVVIDP 547 (569)
T ss_pred HHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence 3 1100 0 0011 135789887 4799999997 5778877777765 35889999999864
No 112
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.58 E-value=6.7e-15 Score=154.40 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=99.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++.+..|..+...+++|+||+++|.|+|+++| .|+++||+++|||++.+.. . +|.||+++++|+++||.||+
T Consensus 402 ~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la----~p~~~Vv~i~GDGsf~m~~-~-eL~Ta~~~~lpv~~vV~NN~~ 475 (586)
T PRK06276 402 HFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVA----KPDANVIAITGDGGFLMNS-Q-ELATIAEYDIPVVICIFDNRT 475 (586)
T ss_pred HhcccCCCCeEEcCCCccccccchhHHHhhhhh----cCCCcEEEEEcchHhhccH-H-HHHHHHHhCCCeEEEEEeCCc
Confidence 456667776666666779999999999999998 4788999999999987652 3 39999999999999999888
Q ss_pred Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... .... ...||.+. |+|+++++|+ +++++.+++++|+ +.++|+|||+.+.+
T Consensus 476 ~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~ 544 (586)
T PRK06276 476 LGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAI----KSGEPYLLDIIIDP 544 (586)
T ss_pred hHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 7753211 0111 24688887 4799999996 5778877777765 35789999999864
No 113
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.58 E-value=7.4e-15 Score=153.09 Aligned_cols=128 Identities=18% Similarity=0.175 Sum_probs=96.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+... ....|+||+++|.|+|++++ .|+++|||++|||++++.. .+|.+|+++++|+++||.||+
T Consensus 399 ~~~~~~~~~~~~-~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~~--~el~ta~~~~l~i~~vv~nN~~ 471 (557)
T PRK08199 399 RFFRFRRYRTQL-APTSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNG--QELATAVQYGLPIIVIVVNNGM 471 (557)
T ss_pred HhcCcCCCCeEE-CCCCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence 455666663333 34579999999999999988 5789999999999987632 559999999999999999998
Q ss_pred Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... ......+||.+. ++|+++.+|+ +++++.+++++++ +.++|+|||+.+.+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~li~v~~~~ 539 (557)
T PRK08199 472 YGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL----ASGKPALIEIRIDP 539 (557)
T ss_pred chHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCH
Confidence 7753211 011234688887 4799999998 4666666666554 46899999999864
No 114
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.57 E-value=1.3e-14 Score=136.08 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=86.0
Q ss_pred CCcccccchHHHHHHHHHHH-hcCCCCeEEEEeCccccc-ccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc----
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQ-YKGTGGVCFALYGDGASN-QGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER---- 90 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k-~~~~~~~vv~~~GDGa~~-~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~---- 90 (355)
+.|+||+++|.|+|++++.- ...|+++|||+.|||++. ++ +.| +.++.++++|+++||.||+ |++......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 45999999999999988711 113789999999999864 33 233 6788899999999999998 665321110
Q ss_pred ------------cCCCccHhhhc--CCcceEE---EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 91 ------------SSASTDYYTRG--DYIPGIW---VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 91 ------------~~~~~d~~~~A--~G~~~~~---VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
....+||++.| +|+++++ |+ +++++.+++++|++ +.++|+|||+.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 12346898874 7999985 54 57777777777653 2688999999864
No 115
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.57 E-value=2.2e-14 Score=154.59 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=110.0
Q ss_pred cccCCcccccchHHHHHHHHHHHhc-------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560 15 FYGGNGIVGAQVPLGTGIAFAAQYK-------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT 86 (355)
Q Consensus 15 ~~~~~g~lG~~lp~AiGaA~A~k~~-------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~ 86 (355)
+..++|+||.|++.|+|.|++.|+. ..+..|+|++|||.++||++||++.+|++++|. +|+||.+|...+..
T Consensus 184 ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG 263 (889)
T TIGR03186 184 WQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDG 263 (889)
T ss_pred eEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence 5557899999999999999998843 236889999999999999999999999999998 99999999988877
Q ss_pred eccccCC-CccHhhh--cCCcceEEE------------------------------------------------------
Q psy14560 87 SAERSSA-STDYYTR--GDYIPGIWV------------------------------------------------------ 109 (355)
Q Consensus 87 ~~~~~~~-~~d~~~~--A~G~~~~~V------------------------------------------------------ 109 (355)
+...... ..++.++ |+||.+++|
T Consensus 264 ~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~ 343 (889)
T TIGR03186 264 PVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAA 343 (889)
T ss_pred ccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHH
Confidence 6654222 3466664 789999999
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 110 ---------------DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 110 ---------------dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
+|||+.+|++|+.+|.+. .++|++|.+.|...+|-+
T Consensus 344 lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTvIla~TvkG~G~~ 394 (889)
T TIGR03186 344 LVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFGMG 394 (889)
T ss_pred HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence 599999999999887642 468999999999777743
No 116
>KOG0523|consensus
Probab=99.56 E-value=3e-14 Score=145.35 Aligned_cols=133 Identities=23% Similarity=0.323 Sum_probs=111.8
Q ss_pred CCCCccccCCcccccchHHHHHHHHHHHhcCC-CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceee
Q psy14560 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGT-GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTS 87 (355)
Q Consensus 10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~ 87 (355)
|+..++.-++|++|++++.|+|+|++.|+.+. +..|+|++|||++++|..||++++|..++|. +|+|..||+.+++.+
T Consensus 108 ~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~ 187 (632)
T KOG0523|consen 108 PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGA 187 (632)
T ss_pred ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCC
Confidence 44556677889999999999999999998877 8899999999999999999999999999999 666666777999877
Q ss_pred ccccCCCccHhh-h--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560 88 AERSSASTDYYT-R--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG 146 (355)
Q Consensus 88 ~~~~~~~~d~~~-~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G 146 (355)
....+ ..|+.+ + |+||.+..|||.|.+++.+++.+|.. ..++|+.|-+.|...+|
T Consensus 188 t~~~~-~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t~~g~G 245 (632)
T KOG0523|consen 188 TSLGF-DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATTFIGRG 245 (632)
T ss_pred Ccccc-cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeeeeeecC
Confidence 66554 356655 3 68999999999999988888888762 35789999999876655
No 117
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.54 E-value=3.2e-14 Score=147.93 Aligned_cols=121 Identities=19% Similarity=0.131 Sum_probs=92.2
Q ss_pred CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec
Q psy14560 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA 88 (355)
Q Consensus 10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~ 88 (355)
|..+...+.+|+||+++|.|+|+++|. + +++|+++|||++++. .. .|.||++++||+++||.||+ |++....
T Consensus 393 ~~~~~~~~~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~-EL~Ta~r~~lpv~~vV~NN~~y~~~~~~ 465 (535)
T TIGR03394 393 DAGLMAPGYYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GW-ELGNCRRLGIDPIVILFNNASWEMLRVF 465 (535)
T ss_pred CCcEECcCccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HH-HHHHHHHcCCCcEEEEEECCccceeehh
Confidence 445555667899999999999999983 3 445789999998774 23 49999999999999999887 8875422
Q ss_pred c-----ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 89 E-----RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 89 ~-----~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
. .....+||.++ |+|+++.+|+ +++++.+++++|++ ..++|+|||+.+.
T Consensus 466 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i~ 521 (535)
T TIGR03394 466 QPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAMLP 521 (535)
T ss_pred ccCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEECC
Confidence 1 12235788886 5799999997 57788777777664 2355899999885
No 118
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.53 E-value=1.4e-14 Score=151.27 Aligned_cols=126 Identities=20% Similarity=0.107 Sum_probs=93.2
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
+++...|.+.....+.+.||+++|.|+|+++| ++++|||++|||++++.. .+|.||+++++|+++||.||+ |
T Consensus 409 ~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~ 481 (568)
T PRK07449 409 FGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGG 481 (568)
T ss_pred ccCcCCCceEEecCCccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCC
Confidence 44445553344345568899999999999987 488899999999987642 338999999999999999998 6
Q ss_pred cceeec---c---------ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 83 GMGTSA---E---------RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 83 ~~~~~~---~---------~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
++.... . .....+||+++| +|+++.+|+ +++++.+++++|+ +.++|+|||+.+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~id 549 (568)
T PRK07449 482 GIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPGLTVIEVKTN 549 (568)
T ss_pred ccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCCCEEEEEeCC
Confidence 642110 0 011246888874 799999996 5777777777665 4689999999885
No 119
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.52 E-value=8.5e-14 Score=133.43 Aligned_cols=111 Identities=22% Similarity=0.160 Sum_probs=83.7
Q ss_pred cccccchHHHHHHHHHHHhcCCCCeEEEEeCccccc-ccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-------
Q psy14560 20 GIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASN-QGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER------- 90 (355)
Q Consensus 20 g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~-~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~------- 90 (355)
+++|.++|+|+|+++| .|++.||++.|||++. .|.. .+.+|+++++|+++||.||+ |++......
T Consensus 68 ~~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~~g~~--el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLA----NPDKHVIVVSGDGDGLAIGGN--HTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHH----CCCCeEEEEECchHHHHhhHH--HHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence 5899999999999998 5899999999999964 3432 26779999999999999998 777431110
Q ss_pred ---------cCCCccHhhh--cCCcceE---EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 91 ---------SSASTDYYTR--GDYIPGI---WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 91 ---------~~~~~d~~~~--A~G~~~~---~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
..+..|+.+. |+|++++ +|+ +++++.+++++|+ +.+||+|||+.+.
T Consensus 142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al----~~~Gp~lIeV~~~ 201 (277)
T PRK09628 142 WTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGF----SHKGFSFFDVFSN 201 (277)
T ss_pred eeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHH----hCCCCEEEEEcCC
Confidence 0122466876 4698875 554 6888877777766 4689999999764
No 120
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.52 E-value=1.6e-13 Score=148.31 Aligned_cols=131 Identities=21% Similarity=0.188 Sum_probs=110.1
Q ss_pred cccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560 15 FYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT 86 (355)
Q Consensus 15 ~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~ 86 (355)
+.-++|+||.|++.|+|.|++.|+ ...++.|+|++|||.+.+|+.||++.+|++++|. +++||.+|...+..
T Consensus 198 ~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG 277 (896)
T PRK13012 198 WQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDG 277 (896)
T ss_pred EecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccC
Confidence 445789999999999999999883 4567899999999999999999999999999998 99999999988876
Q ss_pred eccccCC-CccHhhh--cCCcceEEE--------------------------e---------------------------
Q psy14560 87 SAERSSA-STDYYTR--GDYIPGIWV--------------------------D--------------------------- 110 (355)
Q Consensus 87 ~~~~~~~-~~d~~~~--A~G~~~~~V--------------------------d--------------------------- 110 (355)
+...... ..++.++ |+||.++.| |
T Consensus 278 ~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~ 357 (896)
T PRK13012 278 PVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAA 357 (896)
T ss_pred ccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHH
Confidence 6654322 2455554 789999999 8
Q ss_pred ----------------CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 111 ----------------GMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 111 ----------------G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
|||+.+|++|+..|.+. .++|++|.+.|...+|-+
T Consensus 358 lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 358 LVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence 99999999999877642 457999999999887754
No 121
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.51 E-value=1.7e-13 Score=132.71 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=96.7
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc------
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE------ 89 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~------ 89 (355)
..+++|.++|+|+|+++| .|+++||++.|||++ +.|. ..|.+|+++++|+++||.||+ |++.....
T Consensus 68 ~~g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg~--~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~ 141 (301)
T PRK05778 68 LHTLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIGG--GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPE 141 (301)
T ss_pred cchhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhccH--HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCC
Confidence 348899999999999998 589999999999995 4543 238899999999999999998 77643211
Q ss_pred ----------ccCCCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee--eeCCCCCCCCCc
Q psy14560 90 ----------RSSASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY--RYSGHSMSDPGT 154 (355)
Q Consensus 90 ----------~~~~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~--R~~GHs~~D~~~ 154 (355)
.....+|+.+.| +|+.++ +..-.++.++.+++++|+ +.+||+|||+.+. .+.+....+.
T Consensus 142 g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~----~~~GpalIeV~~~C~~~~~~~~~~~-- 215 (301)
T PRK05778 142 GSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAI----SHKGFAFIDVLSPCVTFNGRNTSTK-- 215 (301)
T ss_pred CcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHH----hCCCCEEEEEcCCCCCCCCcCCccc--
Confidence 001235787764 688876 334457888877777766 4689999998642 2232222110
Q ss_pred ceecchhHHHHHHHH
Q psy14560 155 SFRDPITSFKEKMLN 169 (355)
Q Consensus 155 ~YRDpIr~fee~Li~ 169 (355)
.+.+++..|+++...
T Consensus 216 ~~~~~~~~~~~~~~~ 230 (301)
T PRK05778 216 SPAYMREYYKKRVYK 230 (301)
T ss_pred CHHHHHHHHHhhcEE
Confidence 122556677776654
No 122
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.49 E-value=2.5e-13 Score=130.25 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=87.0
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCccccc-ccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc-----
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASN-QGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE----- 89 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~-~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~----- 89 (355)
+..+.||.++|+|+|+++| +|+++||++.|||++. .|. ..|.+|+++++|+++||.||+ |++.....
T Consensus 57 ~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~--~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~ 130 (280)
T PRK11869 57 GFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGG--NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTL 130 (280)
T ss_pred CCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcH--HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCC
Confidence 4457799999999999888 5899999999999964 322 238999999999999999998 77532111
Q ss_pred -----------ccCCCccHhhhc--CCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 90 -----------RSSASTDYYTRG--DYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 90 -----------~~~~~~d~~~~A--~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
......|+.++| +|++++.. +-.++.++.+++++|++ .+||+|||+.+.
T Consensus 131 ~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p 193 (280)
T PRK11869 131 KGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP 193 (280)
T ss_pred CCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 011235788764 69998763 24578888877777764 689999999753
No 123
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.49 E-value=2.2e-13 Score=131.12 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=82.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-----
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER----- 90 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~----- 90 (355)
..+.||.++|+|+|+++| .|+++||++.|||++ .+|. ..|.+|+++++|+++||.||+ |++......
T Consensus 51 ~~t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~ 124 (287)
T TIGR02177 51 FHGLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLK 124 (287)
T ss_pred cccccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccC
Confidence 335689999999999998 589999999999995 3553 238999999999999999998 776432110
Q ss_pred ---c----------CCCccHhhhcCCc--ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 91 ---S----------SASTDYYTRGDYI--PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 91 ---~----------~~~~d~~~~A~G~--~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
. ..++++.++|.|+ .+.. ...++.++.+++++|+ +.+||+|||+.+
T Consensus 125 G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al----~~~GpslIeV~~ 185 (287)
T TIGR02177 125 GVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAI----NHKGYALVDILQ 185 (287)
T ss_pred CcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 0 0134455666554 3333 2357888877777776 468999999975
No 124
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.48 E-value=4.1e-13 Score=133.21 Aligned_cols=114 Identities=23% Similarity=0.153 Sum_probs=86.4
Q ss_pred CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-CEEEEEEeCC-CcceeeccccCCCcc
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-PCIYVCENNG-YGMGTSAERSSASTD 96 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-Pvi~Vv~NN~-~~~~~~~~~~~~~~d 96 (355)
.|+||+++|+|+|+++| .|+++|||+.|||++.+.. .+|.+++++++ |+++||.||+ |+............|
T Consensus 220 ~GsMG~a~p~AlG~ala----~p~r~Vv~i~GDGsflm~~--~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d 293 (361)
T TIGR03297 220 VGSMGHASQIALGLALA----RPDQRVVCLDGDGAALMHM--GGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLD 293 (361)
T ss_pred echhhhHHHHHHHHHHH----CCCCCEEEEEChHHHHHHH--HHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCC
Confidence 59999999999999998 4789999999999975432 34889999996 7999999998 654322222223578
Q ss_pred Hhhhc--CCc-ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 97 YYTRG--DYI-PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 97 ~~~~A--~G~-~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
|.+.| +|+ .+++|+ +.+++.+++++++ +.++|+|||+.+...
T Consensus 294 ~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~----~~~gp~lIeV~v~~g 338 (361)
T TIGR03297 294 FAQIAKACGYAKVYEVS--TLEELETALTAAS----SANGPRLIEVKVRPG 338 (361)
T ss_pred HHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEecCC
Confidence 88874 686 466764 6888877777764 457899999998643
No 125
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.46 E-value=3.7e-13 Score=129.63 Aligned_cols=113 Identities=22% Similarity=0.213 Sum_probs=84.1
Q ss_pred CcccccchHHHHHHHHHHHhcCCCCeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc-------
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE------- 89 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~------- 89 (355)
.++||.++|+|+|+++| .|+++||++.|||+ ++.|.- .|.+|+++++|+++||.||+ |++.....
T Consensus 68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~~--eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGGN--HFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCHH--HHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 38999999999999998 58999999999996 666542 38899999999999999998 77643211
Q ss_pred cc-----C----CCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 90 RS-----S----ASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 90 ~~-----~----~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
.. . ...|+.++| .|+..+ ++...++.++.+++++|+ +.++|+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al----~~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI----NHKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 00 0 124666665 466655 334457888877777766 468999999975
No 126
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.45 E-value=6.6e-13 Score=127.34 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=87.5
Q ss_pred ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcc-cccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecccc--
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDG-ASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERS-- 91 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDG-a~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~-- 91 (355)
....+++|.++|+|+|+++| .|+++||++.||| ++..|. ..|.+|+++++|+++||.||+ |++...+...
T Consensus 55 ~~~~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t 128 (279)
T PRK11866 55 YGIHGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTT 128 (279)
T ss_pred CCcccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCC
Confidence 34578899999999999998 5899999999999 576664 238999999999999999998 7764311100
Q ss_pred --------C--C----CccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 92 --------S--A----STDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 92 --------~--~----~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
. . ..|+.+.| +|++.+ +.+..++.++.+++++|+ +.+||+|||+..
T Consensus 129 ~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al----~~~Gps~I~v~~ 191 (279)
T PRK11866 129 PRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAI----KHKGFSFIDVLS 191 (279)
T ss_pred CCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 0 0 12777764 688766 445568888877777766 468999999975
No 127
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.45 E-value=1.2e-12 Score=141.43 Aligned_cols=129 Identities=21% Similarity=0.134 Sum_probs=108.1
Q ss_pred ccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceee
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTS 87 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~ 87 (355)
...+++||.|++.|+|.|++.|+ ...+..|+|++|||.+.||+.||++.+|++++|. +++||..|...+..+
T Consensus 191 ~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~ 270 (891)
T PRK09405 191 QFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGP 270 (891)
T ss_pred ecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCc
Confidence 34569999999999999999984 4457899999999999999999999999999998 999999999888766
Q ss_pred ccccCC-CccHhhh--cCCcceEEE--------------------------e----------------------------
Q psy14560 88 AERSSA-STDYYTR--GDYIPGIWV--------------------------D---------------------------- 110 (355)
Q Consensus 88 ~~~~~~-~~d~~~~--A~G~~~~~V--------------------------d---------------------------- 110 (355)
+..... ..++.++ |+||.++.| |
T Consensus 271 v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~l 350 (891)
T PRK09405 271 VRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKAL 350 (891)
T ss_pred cccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHH
Confidence 654221 2455554 789999999 4
Q ss_pred ---------------CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCC
Q psy14560 111 ---------------GMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGH 147 (355)
Q Consensus 111 ---------------G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GH 147 (355)
|||+.+|++|+..|.+. .++|++|.+.|...+|.
T Consensus 351 v~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 351 VADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGM 399 (891)
T ss_pred HhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCCEEEEEeceecCCC
Confidence 99999999999877642 36799999999988876
No 128
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.45 E-value=6.1e-13 Score=125.33 Aligned_cols=120 Identities=28% Similarity=0.349 Sum_probs=85.1
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc-------
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER------- 90 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~------- 90 (355)
+.|+-+.++++|+|.|.|+.+.+++..||+++||||+..|+.+||||.|...+-++|+|++||+++|+.....
T Consensus 109 ~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~ 188 (270)
T PF13292_consen 109 GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSK 188 (270)
T ss_dssp --SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---
T ss_pred cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHh
Confidence 4589999999999999999999999999999999999999999999999999999999999999888643210
Q ss_pred cCCC--------------------ccHhhh--------------cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCe
Q psy14560 91 SSAS--------------------TDYYTR--------------GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPL 135 (355)
Q Consensus 91 ~~~~--------------------~d~~~~--------------A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~ 135 (355)
.... ..+.++ ..|+.++ .|||+|..++.++++. +++-++|+
T Consensus 189 l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~----~K~~~gPv 264 (270)
T PF13292_consen 189 LRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLEN----AKDIDGPV 264 (270)
T ss_dssp ----------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHH----HCCSSSEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHH----HhcCCCCE
Confidence 0000 001111 1267776 8999999887766655 55679999
Q ss_pred EEEEEe
Q psy14560 136 VLEVVT 141 (355)
Q Consensus 136 lIev~t 141 (355)
||++.|
T Consensus 265 llHV~T 270 (270)
T PF13292_consen 265 LLHVIT 270 (270)
T ss_dssp EEEEE-
T ss_pred EEEEeC
Confidence 999976
No 129
>PRK05261 putative phosphoketolase; Provisional
Probab=99.44 E-value=7.7e-13 Score=141.19 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=107.9
Q ss_pred CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHH---HHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQN---FEAYNIAKLWGIP-CIYVCENNGYGMG 85 (355)
Q Consensus 10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~---~EaL~~Aa~~~LP-vi~Vv~NN~~~~~ 85 (355)
|...++....|.||++++.|+|+|+. +++..|+|++|||++++|.+ |++.+++..+++. |+.|+.+|+|+++
T Consensus 132 ~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is 207 (785)
T PRK05261 132 PETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIA 207 (785)
T ss_pred CCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCC
Confidence 55678888899999999999999975 57899999999999999874 7777777777776 7788889999999
Q ss_pred eeccccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHH-----------HcC---CCCe--EEEEEeeeeCC
Q psy14560 86 TSAERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYA-----------SSG---KGPL--VLEVVTYRYSG 146 (355)
Q Consensus 86 ~~~~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~a-----------r~~---~gP~--lIev~t~R~~G 146 (355)
.+..... ...++.++ |+|++.+.|||+|+.++.+++++|++.+ |.+ .+|. +|.++|....|
T Consensus 208 ~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g 287 (785)
T PRK05261 208 NPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWT 287 (785)
T ss_pred CCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCC
Confidence 8877543 34677775 6899999999999999998876666543 334 5899 99999986544
No 130
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.40 E-value=1.7e-12 Score=133.28 Aligned_cols=129 Identities=26% Similarity=0.289 Sum_probs=102.8
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHH-HcCCCEEEEEEeCCCcceeeccc------
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK-LWGIPCIYVCENNGYGMGTSAER------ 90 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa-~~~LPvi~Vv~NN~~~~~~~~~~------ 90 (355)
..|+-+.++++|+|+|.|+.+.+.++.||+++||||++-|+.+||||.|. ..+-|+|+|++||+++|+.+...
T Consensus 113 ~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~ 192 (627)
T COG1154 113 GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLA 192 (627)
T ss_pred ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHH
Confidence 45889999999999999999999999999999999999999999999998 55578999999999998754321
Q ss_pred -cCCC------------------c---cHhhh----------------cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcC
Q psy14560 91 -SSAS------------------T---DYYTR----------------GDYIPGI-WVDGMDVLAVREASKFAVNYASSG 131 (355)
Q Consensus 91 -~~~~------------------~---d~~~~----------------A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~ 131 (355)
.... + ++.++ ..|+.++ .+||||.+++..+++. +++.
T Consensus 193 ~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~----~kd~ 268 (627)
T COG1154 193 RLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKN----AKDL 268 (627)
T ss_pred HHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHH----HhcC
Confidence 0000 0 11111 1266766 8899999988777665 5567
Q ss_pred CCCeEEEEEeeeeCCCCCC
Q psy14560 132 KGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 132 ~gP~lIev~t~R~~GHs~~ 150 (355)
++|+|+++.|...+|+..+
T Consensus 269 ~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 269 KGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred CCCEEEEEEecCCCCCChh
Confidence 9999999999999988764
No 131
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.37 E-value=5.6e-12 Score=121.82 Aligned_cols=124 Identities=16% Similarity=0.074 Sum_probs=95.9
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCCC-CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS 91 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~-~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~ 91 (355)
.+++..+.++|.++|+|.|+++|.+..+++ ..|++++|||++..+.+ |+|+.|+.+++|+++||.||++.++|-....
T Consensus 62 ~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S 140 (300)
T PRK11864 62 LTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRS 140 (300)
T ss_pred ccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCC
Confidence 355666789999999999999998876554 45666999999877765 9999999999999999999997654322111
Q ss_pred -----------------CCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 92 -----------------SASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 92 -----------------~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
...-|+.++ +.|++.+ +++-.|+.++.+++++|++ .+||.+|++..
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112355554 5688876 7788899998888888774 68999999865
No 132
>KOG4166|consensus
Probab=99.35 E-value=8.6e-13 Score=130.26 Aligned_cols=129 Identities=21% Similarity=0.225 Sum_probs=103.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
|+|....|+++..+|+.|+||+++|+|||+..| .|+.+||-+-||+++.+. +.| |.++.+.++||.+++.||.
T Consensus 507 qfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNee 580 (675)
T KOG4166|consen 507 QFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEE 580 (675)
T ss_pred HHhcccCccceeecCCccccccCcchhhccccc----CcccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchh
Confidence 677888999999999999999999999999988 699999999999998764 233 9999999999999999998
Q ss_pred Ccceeecc----------ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAE----------RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~----------~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
.|+.+.+. ...-+|+|.++| .|+++.+|.. -+++ +++++...+.+||+|+|+.+..
T Consensus 581 qGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV~K--~edL----~~k~keflsTkGPvLleV~v~~ 648 (675)
T KOG4166|consen 581 QGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRVTK--KEDL----REKIKEFLSTKGPVLLEVIVPH 648 (675)
T ss_pred hhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCchheeeh--HHHH----HHHHHHHhCCCCCeEEEEEccC
Confidence 56644321 112368999884 6999999974 3444 4455555678999999998753
No 133
>KOG1185|consensus
Probab=99.33 E-value=9.5e-12 Score=124.64 Aligned_cols=129 Identities=21% Similarity=0.230 Sum_probs=99.0
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC--
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-- 81 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-- 81 (355)
.++...|+.+.-.|.+|+||-|++.|+++|++ .|++.|+|+.||++++... .| +.|+++|+|||++||.||+
T Consensus 414 ~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfSa-ME-~ET~vR~~Lpvv~vV~NN~Gi 487 (571)
T KOG1185|consen 414 LLPPRGPRRRLDAGTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFSA-ME-LETFVRYKLPVVIVVGNNNGI 487 (571)
T ss_pred hccCCCcccccCCccccccccchhHHHHHHhh----CCCCeEEEEecCcccCcch-hh-HHHHHHhcCCeEEEEecCCcc
Confidence 34567788888888999999999999998887 5999999999999986643 33 8899999999999998765
Q ss_pred CcceeeccccC---------------CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAERSS---------------ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~~~~---------------~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
||.......+. .+.+|.+. |+|..++.|+ .++++..+++++.+ .+++|+||++...+
T Consensus 488 yg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 488 YGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred cccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 66644322111 12345443 6799999998 68888888887764 46799999998754
No 134
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.31 E-value=1e-11 Score=130.83 Aligned_cols=116 Identities=16% Similarity=0.052 Sum_probs=86.4
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-----
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER----- 90 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~----- 90 (355)
..+++||+++|.|+|+++| .|+++||+++|||++...... +|.+|+++++|+++||.||+ |++......
T Consensus 400 ~~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~~-eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~ 474 (595)
T TIGR03336 400 DTTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGIP-GLINAVYNKANITVVILDNRITAMTGHQPNPGTGV 474 (595)
T ss_pred ceeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCHH-HHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCC
Confidence 3468999999999999988 578999999999998653223 48899999999999999887 776432111
Q ss_pred -----cCCCccHhhh--cCCcceEEEeCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 91 -----SSASTDYYTR--GDYIPGIWVDGM-DVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 91 -----~~~~~d~~~~--A~G~~~~~VdG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
...++||.+. ++|+++.+|+.. |..++.+++++++ +.++|++|++..
T Consensus 475 ~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~----~~~gp~li~v~~ 529 (595)
T TIGR03336 475 TGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAAL----AAEGVSVIIAKQ 529 (595)
T ss_pred CCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHH----hcCCCEEEEEcc
Confidence 1124678876 479999988653 4455566666655 468999999864
No 135
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.31 E-value=5.6e-12 Score=145.72 Aligned_cols=127 Identities=15% Similarity=0.083 Sum_probs=94.9
Q ss_pred cccccCCCCCc-cccCCccccc--chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc--CCCEEEEEE
Q psy14560 4 CMIVINPSPKN-FYGGNGIVGA--QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW--GIPCIYVCE 78 (355)
Q Consensus 4 ~~~~~~p~~~~-~~~~~g~lG~--~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~--~LPvi~Vv~ 78 (355)
+++...|+... +.++.|+||+ ++|.|+|+++|. +++|+|++|||++.+.. .+|.||+++ ++|+++||.
T Consensus 742 ~~~~~~p~~~i~~~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~~--~EL~Ta~r~~~~lpi~iVV~ 814 (1655)
T PLN02980 742 MLSAELPCQWIQVAGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHDT--NGLSILSQRIARKPMTILVI 814 (1655)
T ss_pred ccccccccccceEEecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhhh--hHHHHhhcccCCCCEEEEEE
Confidence 34456676666 3678899999 599999999883 78999999999986642 349999984 999999999
Q ss_pred eCC-Ccceeec------c-----c---cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 79 NNG-YGMGTSA------E-----R---SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 79 NN~-~~~~~~~------~-----~---~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
||+ |++.... . . ...++||.+. |+|+++.+|+ +++++.+++++|. +.++|+||||.|
T Consensus 815 NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~----~~~~p~lIEV~t 888 (1655)
T PLN02980 815 NNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ----VEQMDCVVEVES 888 (1655)
T ss_pred eCCCcHhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh----ccCCCEEEEEec
Confidence 988 5553211 0 0 0124688886 4799999997 5777777666555 468999999999
Q ss_pred ee
Q psy14560 142 YR 143 (355)
Q Consensus 142 ~R 143 (355)
.|
T Consensus 889 ~~ 890 (1655)
T PLN02980 889 SI 890 (1655)
T ss_pred Ch
Confidence 65
No 136
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.26 E-value=2.8e-11 Score=128.14 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=98.5
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee--------cc
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS--------AE 89 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~--------~~ 89 (355)
+.|+-+.++++|+|+|.|+.+.+.+..||+++||||++.|+.+|+||.|...+-++|+|++||+++++.+ ..
T Consensus 187 ~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG 266 (701)
T PLN02225 187 GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASIS 266 (701)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999998766 11
Q ss_pred cc-------CCC-----------------c----cH-hh-----------------hcCCcceE-EEeCCCHHHHHHHHH
Q psy14560 90 RS-------SAS-----------------T----DY-YT-----------------RGDYIPGI-WVDGMDVLAVREASK 122 (355)
Q Consensus 90 ~~-------~~~-----------------~----d~-~~-----------------~A~G~~~~-~VdG~D~~~v~~a~~ 122 (355)
.. ..+ + .+ .+ ...|+.++ .|||||.+++.++++
T Consensus 267 ~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~ 346 (701)
T PLN02225 267 ALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLR 346 (701)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHH
Confidence 00 000 0 00 00 01266666 889999999888877
Q ss_pred HHHHHHHcCCCCeEEEEEeeeeC
Q psy14560 123 FAVNYASSGKGPLVLEVVTYRYS 145 (355)
Q Consensus 123 ~Al~~ar~~~gP~lIev~t~R~~ 145 (355)
++.+. ...+|+||++.|...+
T Consensus 347 ~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 347 EVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHcC--CCCCCEEEEEEecCCC
Confidence 76432 1249999999997443
No 137
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.25 E-value=2.5e-12 Score=124.74 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=83.2
Q ss_pred chhHHHHHHHH-------hhhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccCCCCC
Q psy14560 159 PITSFKEKMLN-------SELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGK 231 (355)
Q Consensus 159 pIr~fee~Li~-------~Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~ 231 (355)
.+++|++.+.. .|++....+||+.+++...+++++||++++||+|+..+++|+++.++|++++|+..
T Consensus 5 ~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~------ 78 (300)
T PF00676_consen 5 LIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAK------ 78 (300)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTT------
T ss_pred HHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCccc------
Confidence 45777776543 23578888999999999999999999999999999999999999999999999984
Q ss_pred CCCCcccccCCCCcccc---CCc--ccccccccccCCchhhhhhhhhccc
Q psy14560 232 GPISWECCAKGKGGSMH---MYA--KNFYGGNGIVGAQTLKSLLKSISGR 276 (355)
Q Consensus 232 ~~~~w~~~~~G~gg~~h---~~~--~~~~~~~~~vg~~~~~a~~~~~~~~ 276 (355)
|.||++| ..+ .+|++.++|||+|+|+|+....|.+
T Consensus 79 ----------g~~g~~~~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k 118 (300)
T PF00676_consen 79 ----------GHGGGRHPLHFSDKGLNILGASSPVGAQVPIAAGVALAIK 118 (300)
T ss_dssp ----------STTTTGCTTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHH
T ss_pred ----------CCCCCccccccccccceeeeccccccccCccccchhHhhh
Confidence 5555566 334 4699999999999999998755543
No 138
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.23 E-value=3.6e-12 Score=125.71 Aligned_cols=102 Identities=23% Similarity=0.220 Sum_probs=86.9
Q ss_pred cee--cchhHHHHHHHH---h---hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560 155 SFR--DPITSFKEKMLN---S---ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG 226 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~---Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g 226 (355)
+|| -.+|.|++++.+ + |++....+||+++++.+.+|+++||++++||+|++.+++|+++..+|++++|+.+|
T Consensus 29 ~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g 108 (341)
T TIGR03181 29 LYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDERG 108 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHHHHHHhcCcCcC
Confidence 466 456999998765 2 35677788999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhhhhcc
Q psy14560 227 CAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 227 ~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
.+. ..++|++|.+++||+|+|.|+.-.++.
T Consensus 109 ~~~-------------------~~~~~~~g~~~~vG~~lp~AiGaAla~ 138 (341)
T TIGR03181 109 SWD-------------------PEGVNILPPNIPIGTQYLHAAGVAYAL 138 (341)
T ss_pred CCC-------------------chhcCccCCCchHhcchhHHHhHHHHH
Confidence 421 134799999999999999999886554
No 139
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.21 E-value=1.8e-11 Score=118.07 Aligned_cols=152 Identities=26% Similarity=0.269 Sum_probs=118.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY 82 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~ 82 (355)
|+++++.|+.+...+..|++||.+|+|+|...| .|++.+|++.||-.++. ..|.|...++++||.|+|+.||.|
T Consensus 402 qflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfqf--mieelavgaq~k~pyihv~vnnay 475 (592)
T COG3960 402 QFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQF--LIEELAVGAQFKIPYIHVLVNNAY 475 (592)
T ss_pred hhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHHH--HHHHHhhhhcccCceEEEEecchH
Confidence 789999999999999999999999999999876 69999999999999876 568899999999999999999996
Q ss_pred -cceeeccc--------cCC------------CccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 83 -GMGTSAER--------SSA------------STDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 83 -~~~~~~~~--------~~~------------~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
|......+ +.. ..|..+. +.|++.++|- ++.++..|+++|..-+.+..-|+++|+
T Consensus 476 lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~ 553 (592)
T COG3960 476 LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEV 553 (592)
T ss_pred HHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeeh
Confidence 33221111 110 1122222 3478889986 688999999999888888999999999
Q ss_pred EeeeeCCCCCCCCCcceecchhHHHHH
Q psy14560 140 VTYRYSGHSMSDPGTSFRDPITSFKEK 166 (355)
Q Consensus 140 ~t~R~~GHs~~D~~~~YRDpIr~fee~ 166 (355)
...|...-++...- |-+..|++.
T Consensus 554 ilervtnismgtei----~~v~efedl 576 (592)
T COG3960 554 ILERVTNISMGTEI----DNVMEFEDL 576 (592)
T ss_pred HHHHhhcccccchh----hhhhhHHHH
Confidence 88877655554321 566667653
No 140
>KOG1182|consensus
Probab=99.02 E-value=1.1e-10 Score=111.46 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=83.1
Q ss_pred hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccCCCCCCCCCcccccCCCCccccCCc
Q psy14560 172 LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYA 251 (355)
Q Consensus 172 l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~~~~~G~gg~~h~~~ 251 (355)
+|...-++|+..++.+++|++.|.|++.||+-|..+|||.++..++.+.+|+..+..| ||++|+|+..
T Consensus 116 FYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gk------------GrQMPvHyGs 183 (432)
T KOG1182|consen 116 FYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGK------------GRQMPVHYGS 183 (432)
T ss_pred EEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCcccccc------------ccccccccCc
Confidence 4667778999999999999999999999999999999999999999999999998876 9999999986
Q ss_pred --ccccccccccCCchhhhhhhhh
Q psy14560 252 --KNFYGGNGIVGAQTLKSLLKSI 273 (355)
Q Consensus 252 --~~~~~~~~~vg~~~~~a~~~~~ 273 (355)
.||+..++|+.+|+|+||.-.+
T Consensus 184 ~elnf~tissplatqlpqAvGaaY 207 (432)
T KOG1182|consen 184 KELNFVTISSPLATQLPQAVGAAY 207 (432)
T ss_pred cccceEEecchhhhccchhhhhhh
Confidence 6999999999999999996533
No 141
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.02 E-value=9.9e-09 Score=99.40 Aligned_cols=123 Identities=19% Similarity=0.104 Sum_probs=93.2
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc-
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE- 89 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~- 89 (355)
+.+....+.+|.+.+.|.|++.|.+..+++..||++.|||++ ..|. ++|.-|...+.++++||.||. |+.+.-+.
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~--~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S 139 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF--QSLSGAMERGHNILYLMYDNEAYMNTGIQRS 139 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH--HHHHHHHHcCCCeEEEEECCccccCCCCCCC
Confidence 445566788999999999999998776778899999999995 4443 668899999999999999998 65421110
Q ss_pred ---------------c-----cCCCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 90 ---------------R-----SSASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 90 ---------------~-----~~~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
. .....|+..++ .|++++ +++-.++.++.+++++|++ .+||.||++..
T Consensus 140 ~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 140 GSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 11123566554 788877 6677799998888887764 68999999964
No 142
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.00 E-value=1.1e-09 Score=109.50 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=102.4
Q ss_pred CCccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeC
Q psy14560 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80 (355)
Q Consensus 1 ~~~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN 80 (355)
+|+.|+...|.+..+.-++++||+-+..++|+++| .|++.|++++||||..+ .+..|.|+..++..+++|+.||
T Consensus 425 LhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN 498 (617)
T COG3962 425 LHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDN 498 (617)
T ss_pred HHHHhccCCCCceeeeecccccccccccccccccC----CCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECC
Confidence 35678888898888888999999999999998855 78999999999999765 4556999999999999999988
Q ss_pred C-Ccceeec------------------cccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 81 G-YGMGTSA------------------ERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 81 ~-~~~~~~~------------------~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
. ||-..+. +......||++.| +|+...+|. +.+++ +.|++.+++..+++||++
T Consensus 499 ~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL----~aAL~~Ak~~~~ttvi~I 572 (617)
T COG3962 499 RGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEEL----EAALADAKASDRTTVIVI 572 (617)
T ss_pred CCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHH----HHHHHHHHhCCCCEEEEE
Confidence 6 6532111 0123446888864 699999996 56665 455566677899999999
Q ss_pred Eeee
Q psy14560 140 VTYR 143 (355)
Q Consensus 140 ~t~R 143 (355)
.|..
T Consensus 573 ~t~P 576 (617)
T COG3962 573 DTDP 576 (617)
T ss_pred ecCC
Confidence 8864
No 143
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.88 E-value=5.7e-09 Score=105.96 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=78.2
Q ss_pred ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccccC-C
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAERSS-A 93 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~~~-~ 93 (355)
.+-+|++|+.+|+++|+++|. +++.+|.|+||||++.. +.| +.+-.+++|| +|||++||+|-+........ +
T Consensus 407 Q~lWGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~ 480 (557)
T COG3961 407 QPLWGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAP 480 (557)
T ss_pred ccchhhcccccHhhhhhhhcC----CCccEEEEEcCchhhhh-HHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcC
Confidence 446899999999999999995 78999999999998774 344 8889999997 66666777787755433211 1
Q ss_pred -----CccHhhh--cCC---cce-EEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 94 -----STDYYTR--GDY---IPG-IWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 94 -----~~d~~~~--A~G---~~~-~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
.=|+.++ ++| ... .++. ..+++..+++.+.+ ..+++.+|||...+
T Consensus 481 YNdI~~Wd~~~l~~afg~~~~~~~~~~~--~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 481 YNDIQSWDYTALPEAFGAKNGEAKFRAT--TGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred cccccccchhhhhhhcCCCCceEEEeec--ChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 1134443 444 333 3443 23344444444332 35689999998864
No 144
>KOG1184|consensus
Probab=98.44 E-value=1.3e-06 Score=88.92 Aligned_cols=117 Identities=22% Similarity=0.184 Sum_probs=78.2
Q ss_pred ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccccC--
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAERSS-- 92 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~~~-- 92 (355)
...+|++|+.+|+++|+++|. ++++|+.|+|||+++... .| +.++.+++|| ++|++.||+|-+........
T Consensus 411 q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlTv-Qe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn 484 (561)
T KOG1184|consen 411 QMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLTV-QE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYN 484 (561)
T ss_pred EEEEeeccccchhhhhhhhcc----CCceEEEEecCccceeeH-HH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCcc
Confidence 446799999999999999995 679999999999987753 44 8899999999 45555555687754332211
Q ss_pred --CCccHhhh--cCC-----cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 93 --ASTDYYTR--GDY-----IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 93 --~~~d~~~~--A~G-----~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.+=||.++ |+| ....+|- ...+..++.+.+.. .+.++|.+|||...
T Consensus 485 ~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 485 DIQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATF--EKNDKIRLIEVILP 539 (561)
T ss_pred ccccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhh--cccCceEEEEEecC
Confidence 11245443 442 3334442 23355566666552 24567999999874
No 145
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=98.15 E-value=1.6e-06 Score=82.74 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=76.7
Q ss_pred hhhhhhhHHHHHHhhHHHhhcc------ccccccc-cccccceee--cCCCHHHHHHHHhcccc---cCCCCCCCCCccc
Q psy14560 171 ELATVDELKEACAVGMRAVMRE------QDSIISA-YRVHGWTYL--MGVSVFGVLSELTGRRT---GCAKGKGPISWEC 238 (355)
Q Consensus 171 Gl~t~~e~qEa~qvg~~~al~~------~D~v~~~-yR~~~~~~~--~g~~~~~~~~~~~g~~~---g~~~~~~~~~w~~ 238 (355)
+.++ .+++|....+...+++. .|++++. ||++...|+ .|.|+.++|+|++|+.+ +.+.
T Consensus 13 krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~--------- 82 (265)
T cd02016 13 KRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEG--------- 82 (265)
T ss_pred eEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCC---------
Confidence 3344 78899999998888887 6999999 999999999 99999999999999876 4332
Q ss_pred ccCCCCccccCCc-------------ccccccccccCCchhhhhhhhhcc
Q psy14560 239 CAKGKGGSMHMYA-------------KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 239 ~~~G~gg~~h~~~-------------~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
|++.++|+.. .++++.+++||+|+|+|+....|.
T Consensus 83 ---~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~ 129 (265)
T cd02016 83 ---SGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAK 129 (265)
T ss_pred ---CCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHH
Confidence 7788888853 267899999999999999874443
No 146
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.13 E-value=3.6e-05 Score=74.71 Aligned_cols=115 Identities=22% Similarity=0.205 Sum_probs=82.2
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Cccee-------e
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGT-------S 87 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~-------~ 87 (355)
...+.-|-.++.|.|+.+|. ++..||++.|||. ...|--+ |.-+.+.+..|++||.||. |+.+. +
T Consensus 67 ~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp 140 (294)
T COG1013 67 WVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQASPTTP 140 (294)
T ss_pred ceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCccCCCCC
Confidence 34567788999999999985 6779999999996 5666433 7778889999999999998 66532 1
Q ss_pred cc---------ccC-CCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 88 AE---------RSS-ASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 88 ~~---------~~~-~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
.. ... ..-|...+ ++|.+++ ++.--++.++.+.+++|++ .+||.||++-+
T Consensus 141 ~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~s 203 (294)
T COG1013 141 KGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLS 203 (294)
T ss_pred CCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEec
Confidence 11 100 11144444 4687766 6666678888777777665 57999999864
No 147
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.03 E-value=1.3e-05 Score=78.85 Aligned_cols=98 Identities=21% Similarity=0.364 Sum_probs=62.7
Q ss_pred CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-----C-----EEEEEEeCCCcceeec
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-----P-----CIYVCENNGYGMGTSA 88 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-----P-----vi~Vv~NN~~~~~~~~ 88 (355)
-|-||++++.|.|+++- +||-+|+|++|||.+.+|. +|+.|.. | |+=|+.=|+|-|+.++
T Consensus 139 GGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pT 208 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGP------LAASWHSNKFLNPATDGAVLPILHLNGYKISNPT 208 (379)
T ss_dssp -SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-
T ss_pred CcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCc------ccccccccceeCcccCceeeceEEecCccccCCe
Confidence 47789999999888875 6999999999999998875 3444421 2 6666666999887654
Q ss_pred ccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHH
Q psy14560 89 ERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVN 126 (355)
Q Consensus 89 ~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~ 126 (355)
-.. .+..++.+. ++|+..+.|+|.|+.++...+..+++
T Consensus 209 il~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald 249 (379)
T PF09364_consen 209 ILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALD 249 (379)
T ss_dssp HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHH
T ss_pred EeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 321 122344443 68999999999999888765544443
No 148
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=98.02 E-value=5.6e-06 Score=90.96 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=80.1
Q ss_pred cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHh------hcccccccc-ccccccceee--cCCCHHHHHHHHhccc-
Q psy14560 158 DPITSFKEKMLNS---ELATVDELKEACAVGMRAV------MREQDSIIS-AYRVHGWTYL--MGVSVFGVLSELTGRR- 224 (355)
Q Consensus 158 DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~a------l~~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~~g~~- 224 (355)
-.++.||+.|.+. +-.-..+++|+...+...+ +...|++++ +||+|+..|+ +|.|+..+|+|++|+.
T Consensus 199 ~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~ 278 (924)
T PRK09404 199 TAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHG 278 (924)
T ss_pred HHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCC
Confidence 3458898888662 1122478899999888774 447799999 6999999999 5999999999999986
Q ss_pred ------ccCCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhhhhcc
Q psy14560 225 ------TGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 225 ------~g~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
+|..| --+.......|+||+||+.... ..+++|++.|+|+....|.
T Consensus 279 ~~~~~~~Gdvk--yHlG~~~~~~g~gg~mhi~l~~---npShleav~Pva~G~A~A~ 330 (924)
T PRK09404 279 PDEVLGSGDVK--YHLGFSSDRETDGGEVHLSLAF---NPSHLEIVNPVVEGSVRAR 330 (924)
T ss_pred CCCCCCCCCcc--cccCccccccCCCCeeEeeccC---CccccccccCeehhHHHHH
Confidence 22221 0011111123889999986532 3388999999999875543
No 149
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=97.94 E-value=0.00013 Score=76.88 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=53.7
Q ss_pred CcccccchHHHHHHHHHHHhc-------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYK-------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG 81 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~-------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~ 81 (355)
+.+||-|.-.|+=.|.-.|+- .++..|+||+|||.+.+++..+++..|++++|. ++|||+=|.
T Consensus 191 TvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNl 261 (887)
T COG2609 191 TVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNL 261 (887)
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecch
Confidence 467888887888777777663 368899999999999999999999999999998 888888664
No 150
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.51 E-value=0.00038 Score=72.89 Aligned_cols=113 Identities=23% Similarity=0.222 Sum_probs=76.7
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeecccc---
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERS--- 91 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~--- 91 (355)
..+-.||.++++|-|++++. .+.+|+++|||.+ ..|. .+|..|+..+.+++++|.+|.+ +|+..+..-
T Consensus 425 d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~ 497 (640)
T COG4231 425 DTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTG 497 (640)
T ss_pred hhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcc
Confidence 34456888888888888763 3889999999995 5554 3488899999999999999996 443221110
Q ss_pred -------CCCccHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 92 -------SASTDYYT--RGDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 92 -------~~~~d~~~--~A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
....++.+ ++.|+..+ +||-.|..++.+++++|+ +..+|.+|-..
T Consensus 498 ~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keal----e~~gpsViiak 552 (640)
T COG4231 498 VAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEAL----EVPGPSVIIAK 552 (640)
T ss_pred cccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHh----cCCCceEEEEc
Confidence 01122333 35677766 445567777666666655 57889998764
No 151
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.26 E-value=0.0019 Score=64.28 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=63.2
Q ss_pred CeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Cccee-------ecc---------ccCCCccHhhh--cC
Q psy14560 43 GVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGT-------SAE---------RSSASTDYYTR--GD 102 (355)
Q Consensus 43 ~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~-------~~~---------~~~~~~d~~~~--A~ 102 (355)
..||++.|||. ...|-- .|.-|...+.+|++||.||. |+.+. +.. .....-|+... ++
T Consensus 152 ~~v~v~gGDG~~ydIG~~--~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYG--GLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchh--hHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 58999999997 345432 26667778999999999998 66531 111 11112345444 46
Q ss_pred CcceE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 103 YIPGI-WVD-GMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 103 G~~~~-~Vd-G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|.+++ ++. +.++.++.+++++|++ .+||.+|++-.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 87776 554 3588888888888774 59999999965
No 152
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=96.85 E-value=0.00094 Score=70.68 Aligned_cols=83 Identities=11% Similarity=-0.039 Sum_probs=65.9
Q ss_pred hhhhhhHHHHHHhhHHHhhc---cccccc--cccccccceeecCCCHHHHHHHHhcccccCCCCCCCCCcccccCCCCcc
Q psy14560 172 LATVDELKEACAVGMRAVMR---EQDSII--SAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGS 246 (355)
Q Consensus 172 l~t~~e~qEa~qvg~~~al~---~~D~v~--~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~~~~~G~gg~ 246 (355)
.+.+.-++ ++.+.+..+. +.|+++ +.||+|++.+.+|.++...+.+++|+.+|+++ +++ |
T Consensus 41 h~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~------------~~~-s 105 (581)
T PRK12315 41 HVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTN------------PEE-S 105 (581)
T ss_pred CcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHcCCCCCCCC------------CCC-C
Confidence 45555556 5555566666 789999 99999999999999999999999999999987 777 4
Q ss_pred ccCCcccccccccccCCchhhhhhhhhc
Q psy14560 247 MHMYAKNFYGGNGIVGAQTLKSLLKSIS 274 (355)
Q Consensus 247 ~h~~~~~~~~~~~~vg~~~~~a~~~~~~ 274 (355)
+|.. ..++++|++++.|+.-.+|
T Consensus 106 ~~~~-----~~~g~~~~~ls~A~G~A~A 128 (581)
T PRK12315 106 EHDF-----FTVGHTSTSIALATGLAKA 128 (581)
T ss_pred CCCC-----cCCCcHHHHHHHHHHHHHH
Confidence 4531 3778899999999875433
No 153
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=96.83 E-value=0.0024 Score=66.20 Aligned_cols=110 Identities=25% Similarity=0.120 Sum_probs=68.0
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeC-CCcceeecc---------cc
Q psy14560 22 VGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN-GYGMGTSAE---------RS 91 (355)
Q Consensus 22 lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN-~~~~~~~~~---------~~ 91 (355)
+-+.++.|+|++.|. .+++|.++||=|+-.-. -+|........|+++|+.|| +-||-.... ..
T Consensus 424 IDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~ 496 (566)
T COG1165 424 IDGTVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERL 496 (566)
T ss_pred cchhHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHh
Confidence 345677899999874 56799999999952110 12445566677866666555 455522111 11
Q ss_pred C---CCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 92 S---ASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 92 ~---~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
+ ...||...+ ||+.+.+++. ..++.+++.. +-...|-.|||++|.|-
T Consensus 497 F~tPh~ldF~~la~~y~l~y~~~~s--~~~l~~~~~~----~~~~~g~~viEvkt~r~ 548 (566)
T COG1165 497 FGTPHGLDFAHLAATYGLEYHRPQS--WDELGEALDQ----AWRRSGTTVIEVKTDRS 548 (566)
T ss_pred cCCCCCCCHHHHHHHhCccccccCc--HHHHHHHHhh----hccCCCcEEEEEecChh
Confidence 1 124666654 6888888764 5555554444 44457799999999863
No 154
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0054 Score=65.07 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHH----cCCC----EEEEEEeCCC
Q psy14560 11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKL----WGIP----CIYVCENNGY 82 (355)
Q Consensus 11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~----~~LP----vi~Vv~NN~~ 82 (355)
...+...--|.||+++..|.|+++= .||-+++|++|||....|. +.++-. ++-+ ++=|..=|+|
T Consensus 144 etPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dGavLPIL~lNGy 215 (793)
T COG3957 144 ETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDGAVLPILHLNGY 215 (793)
T ss_pred CCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCc----cccccccccccCccccCceeeEEEecce
Confidence 3344444558899999999998874 6999999999999654443 222211 1222 5556666999
Q ss_pred cceeeccccC-CCccHhhh--cCCcceEEEeCCCHHHHH
Q psy14560 83 GMGTSAERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVR 118 (355)
Q Consensus 83 ~~~~~~~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~ 118 (355)
.|+.+.-... +..++.+. ++|..-+-|+|.|+.+.-
T Consensus 216 kI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~h 254 (793)
T COG3957 216 KIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMH 254 (793)
T ss_pred eccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhh
Confidence 9976543222 23344443 679999999998988743
No 155
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.49 E-value=0.033 Score=47.65 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEe-CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALY-GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI 104 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~-GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~ 104 (355)
..+|.|++++ +. ..+++.. |.|..+ ..+.+..|...++|+++++.+........ . .....+.......+
T Consensus 48 ~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~-~-~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAK-Q-TFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhcc-C-cccccCHHHHHHHh
Confidence 3446666655 33 4444444 888753 34567788888999999997665321111 1 01112222222344
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
+...+--.++.+..+.+.+|++.+...+||++|++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 118 PEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred hheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 444333356778888888998888878899999863
No 156
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.33 E-value=0.022 Score=64.44 Aligned_cols=118 Identities=16% Similarity=0.005 Sum_probs=78.7
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccc--cC
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAER--SS 92 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~--~~ 92 (355)
-++..||+....++|.+-. .+++.||.++|||.+ ..|.. +|.-|+..+.+++++|.+|.. +|+..+.. ..
T Consensus 478 ~~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~ 551 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGL 551 (1165)
T ss_pred CeeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCc
Confidence 4567799999999998775 245779999999994 66653 478888899999999998884 55433221 12
Q ss_pred CCccHhhh--cCCcceEEEeCCCHHHHHHH--------------HHHHHHHHHcCCCCeEEEEE
Q psy14560 93 ASTDYYTR--GDYIPGIWVDGMDVLAVREA--------------SKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 93 ~~~d~~~~--A~G~~~~~VdG~D~~~v~~a--------------~~~Al~~ar~~~gP~lIev~ 140 (355)
+.+++... |.|+.-+.|-..|+...... ++...+..|+.+|+++|...
T Consensus 552 ~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~ 615 (1165)
T PRK09193 552 SVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD 615 (1165)
T ss_pred chhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 33555553 67988776654556555332 33333333467888888764
No 157
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.30 E-value=0.021 Score=64.78 Aligned_cols=113 Identities=19% Similarity=0.080 Sum_probs=75.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCCc
Q psy14560 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSAST 95 (355)
Q Consensus 18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~ 95 (355)
++-.||+....++|.+-+. .++.+|+++|||.+ ..|.. +|.-|+..+.+++++|.+|.. +|+..+.. ....
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~-~g~i 538 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPV-DGSI 538 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCC-CCCC
Confidence 4567999999999988762 45679999999994 66653 588888899999999999984 55433221 1122
Q ss_pred cHhh-----hcCCcceEEEeCCCHHH-----H-----------HHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 96 DYYT-----RGDYIPGIWVDGMDVLA-----V-----------REASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 96 d~~~-----~A~G~~~~~VdG~D~~~-----v-----------~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
++.+ +|.|+.-+.|-..|+.. + .+++++++ ++.+||++|...
T Consensus 539 ~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~~ 601 (1159)
T PRK13030 539 SVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIYD 601 (1159)
T ss_pred CHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 3333 26798877664445544 2 23334433 357788888764
No 158
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.00 E-value=0.032 Score=63.14 Aligned_cols=117 Identities=17% Similarity=0.032 Sum_probs=74.9
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCC
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSAS 94 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~ 94 (355)
.++..||......+|.+-. .+++.+|.++|||.+ ..|.. +|..|+..+.+++++|.+|.. +|+..+.. ...
T Consensus 492 ~~~~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMTGgQp~-~G~ 564 (1186)
T PRK13029 492 EGFSQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMTGGQPV-DGV 564 (1186)
T ss_pred ceeeccCcchhhheeeccc----CCCCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhccCCCCC-CCc
Confidence 3456789988889998765 235679999999994 66653 488888899999999999884 55432221 112
Q ss_pred ccHhh-----hcCCcceEEEeCCCHHHHH--------------HHHHHHHHHHHcCCCCeEEEEE
Q psy14560 95 TDYYT-----RGDYIPGIWVDGMDVLAVR--------------EASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 95 ~d~~~-----~A~G~~~~~VdG~D~~~v~--------------~a~~~Al~~ar~~~gP~lIev~ 140 (355)
.++.. +|.|+.-+.|-..|+.... +.++...+..|+.+|+++|...
T Consensus 565 ~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 565 LTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred CCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 23333 3678877755333453332 2233333333467888888764
No 159
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.61 E-value=0.15 Score=44.03 Aligned_cols=103 Identities=23% Similarity=0.174 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG-- 101 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A-- 101 (355)
..+|.|.+++. +++.++++ |=|..+ ..++|..|...++|+|++..+-..........+ ..|.....
T Consensus 47 ~~~A~g~~~~~-----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q--~~d~~~~~~~ 116 (155)
T cd07035 47 VGMADGYARAT-----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQ--EIDQVALFRP 116 (155)
T ss_pred HHHHHHHHHHH-----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCccc--ccCHHHHHHH
Confidence 34555665552 33333333 344333 346788888899999999876542211111111 12222221
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEE
Q psy14560 102 DYIPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVV 140 (355)
Q Consensus 102 ~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~ 140 (355)
.--...+++ +++++.+.+.+|++.+... ++|+.|++.
T Consensus 117 ~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 112355664 6788999999999999877 789999873
No 160
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.53 E-value=0.28 Score=43.29 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=67.4
Q ss_pred ccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHH-HcCCCEEEEEEeCCC-cceeeccccCCCccHhhh
Q psy14560 23 GAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK-LWGIPCIYVCENNGY-GMGTSAERSSASTDYYTR 100 (355)
Q Consensus 23 G~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa-~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~ 100 (355)
+.+..+|.|..++ .++.++|+.+=|- |...-+|..|. ..++|+++++..-+. +-..+ .+.....+.+.
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~--~q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEKIP--AQIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCc--cccchhhhhHH
Confidence 4555556666644 4566788877773 34556688888 899999999954442 11100 00000111111
Q ss_pred ---cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 101 ---GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 101 ---A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
..+++...++ +++++ +++++|++.+.+.++|+.|-+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 1366788885 47889 9999999999999999998764
No 161
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=95.35 E-value=0.28 Score=42.57 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=55.9
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc-ceeeccccCCCccHhhhc-CC--cceEEEeCCCHHHHHH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG-MGTSAERSSASTDYYTRG-DY--IPGIWVDGMDVLAVRE 119 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~A-~G--~~~~~VdG~D~~~v~~ 119 (355)
.+++..|-|..+. ...|..|...+.|+|+|+-+-... ...+ .. ...++.... .+ ....++ .+++++.+
T Consensus 67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 138 (160)
T cd07034 67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLP-KP--DQSDLMAARYGGHPWPVLAP--SSVQEAFD 138 (160)
T ss_pred EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCC-Cc--CcHHHHHHHhCCCCEEEEeC--CCHHHHHH
Confidence 5556667777543 345777888899999999765532 1111 00 011121211 12 444455 47899999
Q ss_pred HHHHHHHHHHcCCCCeEEEE
Q psy14560 120 ASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 120 a~~~Al~~ar~~~gP~lIev 139 (355)
.+++|++.++..++|++|-+
T Consensus 139 ~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 139 LALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHhCCCEEEEc
Confidence 99999999999889999864
No 162
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.30 E-value=0.077 Score=60.63 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=63.4
Q ss_pred CeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccce-------eeccc---------cCCCccHhhh--cC
Q psy14560 43 GVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMG-------TSAER---------SSASTDYYTR--GD 102 (355)
Q Consensus 43 ~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~-------~~~~~---------~~~~~d~~~~--A~ 102 (355)
..||++.|||. ...|-- .|..+...+.+|.+||.||. |+.+ +|... ....-|+... ++
T Consensus 952 ~sv~~~~GDG~~~diG~~--~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYG--GLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCcc--chHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 47999999997 344421 26677778999999999998 6542 22111 1112244444 46
Q ss_pred CcceE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 103 YIPGI-WVD-GMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 103 G~~~~-~Vd-G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
|.+++ ++. +.++.++.+++.+|+ +.+||.+|++-+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~----~~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAE----AYDGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHH----cCCCCEEEEEECC
Confidence 87776 665 568888888888776 4689999999653
No 163
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.28 E-value=0.23 Score=43.98 Aligned_cols=104 Identities=18% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--Ccc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G~~ 105 (355)
+|-|.+.+. +.-..+++..|=|.++. .-++..|...++|+|+|.-+-....... ......|...... --.
T Consensus 53 mA~gyar~t---g~~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 124 (164)
T cd07039 53 AASAEAKLT---GKLGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLALFKDVAVY 124 (164)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCHHHHHHHhhcE
Confidence 344555442 22233444446666543 3457778889999999987655321110 0111123333222 223
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
..+++ +++++.+++++|++.++..+||+.|++..
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 125 NETVT--SPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 45665 68889999999999988888999999864
No 164
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=94.39 E-value=0.24 Score=43.83 Aligned_cols=106 Identities=21% Similarity=0.122 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh--c
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR--G 101 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~--A 101 (355)
.-+|.|.+++. +++.+|+. |=|.++. .-+|..|...++|+|+|+-+-..........+ ...|.... .
T Consensus 52 ~~~A~g~ar~~-----g~~~v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~ 122 (172)
T PF02776_consen 52 AFMADGYARAT-----GRPGVVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRP 122 (172)
T ss_dssp HHHHHHHHHHH-----SSEEEEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGG
T ss_pred HHHHHHHHHhh-----ccceEEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhcc
Confidence 34566666552 45555555 3444433 33566788899999999987663221111111 11233332 2
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHH-HcCCCCeEEEEEee
Q psy14560 102 DYIPGIWVDGMDVLAVREASKFAVNYA-SSGKGPLVLEVVTY 142 (355)
Q Consensus 102 ~G~~~~~VdG~D~~~v~~a~~~Al~~a-r~~~gP~lIev~t~ 142 (355)
..-...+++ +++++.+++++|++.+ ...++|+.|++...
T Consensus 123 ~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 123 VTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp GSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred ccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 233466775 5778889999999988 67789999999753
No 165
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.05 E-value=0.82 Score=40.29 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=55.8
Q ss_pred eEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcc-eeec--cccC--CC-ccHhhhcC--CcceEEEeCCC
Q psy14560 44 VCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGM-GTSA--ERSS--AS-TDYYTRGD--YIPGIWVDGMD 113 (355)
Q Consensus 44 ~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~-~~~~--~~~~--~~-~d~~~~A~--G~~~~~VdG~D 113 (355)
+.+|++ |=|.++ ..-+|..|...+.|+|+|.-+..... .... .... .. .|...... --...+|. +
T Consensus 60 ~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~ 134 (162)
T cd07038 60 LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--D 134 (162)
T ss_pred CEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--C
Confidence 555554 455444 23457788889999999997654221 1100 0000 00 12222222 22345664 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 114 VLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 114 ~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
++++.+++++|++.+..++||+.|++.
T Consensus 135 ~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 135 PENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 788999999999999998899999874
No 166
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=93.90 E-value=0.53 Score=47.38 Aligned_cols=116 Identities=20% Similarity=0.183 Sum_probs=74.3
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHh--hhc
Q psy14560 24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYY--TRG 101 (355)
Q Consensus 24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~--~~A 101 (355)
.++.+|+|++++ +.++++.+-=+++.- .+|.+.+++-.++|+|+++.+... .++.........|+. ..+
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~l--m~E~~~~a~~~e~P~Viv~~~R~g-p~tg~p~~~~q~D~~~~~~~ 129 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFSL--MQENIGYAAMTETPCVIVNVQRGG-PSTGQPTKPAQGDMMQARWG 129 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHHH--HHHHHHHHHHcCCCEEEEEeecCC-CCCCCCCCcCcHHHHHHhcc
Confidence 456678888887 444555544444333 357788888889999998887542 111111111112332 222
Q ss_pred -CC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560 102 -DY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 102 -~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~ 150 (355)
.| .+-+.+.-.|+.+.++....|.+.+.+.+-|+++-... +.+|+..
T Consensus 130 ~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~--~lsh~~~ 178 (376)
T PRK08659 130 THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE--VVGHMRE 178 (376)
T ss_pred cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech--HhhCCcc
Confidence 22 44455566789999999999999988888899997776 3777753
No 167
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=93.86 E-value=0.11 Score=57.89 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=59.6
Q ss_pred ccccccccc-cccccceee--cCCCHHHHHHHHhccccc-CCCCCCCCCcccccCCCCcc-ccCCc-------------c
Q psy14560 191 REQDSIISA-YRVHGWTYL--MGVSVFGVLSELTGRRTG-CAKGKGPISWECCAKGKGGS-MHMYA-------------K 252 (355)
Q Consensus 191 ~~~D~v~~~-yR~~~~~~~--~g~~~~~~~~~~~g~~~g-~~~~~~~~~w~~~~~G~gg~-~h~~~-------------~ 252 (355)
.-.|++++. ||++...|+ .|.|+..+|+|+.|+..+ .+. |+|.. .|+.. .
T Consensus 241 gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~------------g~gdvKyHlg~~~~~~~~~~~~~~~ 308 (929)
T TIGR00239 241 GTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPD------------GTGDVKYHMGRFSSDFTTDGKLVHL 308 (929)
T ss_pred CCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccC------------CCCCcCccCCCcccccccCCCccee
Confidence 345999998 999999999 999999999999997665 232 67776 77762 3
Q ss_pred cccccccccCCchhhhhhhhhcc
Q psy14560 253 NFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 253 ~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
.+++.+++++++.|+++.+..|.
T Consensus 309 ~l~~npSHLeav~Pva~G~ArA~ 331 (929)
T TIGR00239 309 ALAFNPSHLEIVSPVVIGSTRAR 331 (929)
T ss_pred eecCCCcccccccchhhhHHHHH
Confidence 67889999999999999885543
No 168
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=93.60 E-value=0.59 Score=46.62 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccH--hhh-
Q psy14560 24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDY--YTR- 100 (355)
Q Consensus 24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~--~~~- 100 (355)
.++.+|+|++++ +.++++.+-|.++.- .+|.|..|+-..+|+++++.+=. +-++.. .+....|. +.+
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~l--m~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~ 128 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGISL--KQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHHH--HHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhc
Confidence 356778898887 566888887777655 56889999999999888887643 211111 11111122 222
Q ss_pred -cCC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 101 -GDY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 101 -A~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
+.| .+....+-.|+.++++....|.+.+.+..-|+++-... +.+|+.
T Consensus 129 ~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~--~lsh~~ 177 (352)
T PRK07119 129 GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDG--VLGQMM 177 (352)
T ss_pred CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcch--hhhCce
Confidence 222 34445566789999999999999888888899997766 356764
No 169
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.00 E-value=0.09 Score=51.34 Aligned_cols=63 Identities=13% Similarity=-0.041 Sum_probs=54.9
Q ss_pred ccccccceeecCCCHH-HHHHHHhcccc------cCCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhh
Q psy14560 199 AYRVHGWTYLMGVSVF-GVLSELTGRRT------GCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLK 271 (355)
Q Consensus 199 ~yR~~~~~~~~g~~~~-~~~~~~~g~~~------g~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~ 271 (355)
-||+|++....|.++. ..+.+.+|+.+ ||+. +.+|++|+...++.+.++++|+++++|..-
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~------------~~~g~~p~~~~~~~~i~~~~G~~~~~A~G~ 81 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCST------------VIQGDTPKSPLTVPVLHTAFAATAAVASGI 81 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccc------------eecCCCCcccccccceeehhhChHHHHHHH
Confidence 5899999999999998 99999999887 7776 888888887789999999999999998875
Q ss_pred hh
Q psy14560 272 SI 273 (355)
Q Consensus 272 ~~ 273 (355)
..
T Consensus 82 a~ 83 (300)
T PRK11864 82 EE 83 (300)
T ss_pred HH
Confidence 33
No 170
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=92.60 E-value=0.95 Score=40.14 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY-- 103 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G-- 103 (355)
+|-|.+.+ .+++.+|++ |=|..+. .-++..|-..+.|+|+|+.+-..........+ ..|......-
T Consensus 50 mAdgyar~-----sg~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~vt 119 (162)
T cd07037 50 FALGLAKA-----SGRPVAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGANQ--TIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHh-----hCCCEEEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCc--ccchhhhcccee
Confidence 45555554 234455444 5555442 34577788899999999876442211111111 1122221111
Q ss_pred cceEEEeCCCHHH------HHHHHHHHHHHHHcCC-CCeEEEEE
Q psy14560 104 IPGIWVDGMDVLA------VREASKFAVNYASSGK-GPLVLEVV 140 (355)
Q Consensus 104 ~~~~~VdG~D~~~------v~~a~~~Al~~ar~~~-gP~lIev~ 140 (355)
-...+|. ++++ +.+++++|+..++..+ ||++|++.
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 1233443 3344 7788899998888764 89999874
No 171
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=91.54 E-value=0.88 Score=45.59 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=67.9
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEEeCcccccc-cHHHHHHHHHHHcCCCEEEEEEeCC-Ccce-eeccccCCCccHh
Q psy14560 22 VGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQ-GQNFEAYNIAKLWGIPCIYVCENNG-YGMG-TSAERSSASTDYY 98 (355)
Q Consensus 22 lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~-G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~-~~~~~~~~~~d~~ 98 (355)
=|.++++|.|+.+| .+++.++++=-.+... -.-..+|.....|++|++++|..-+ ++.- .+.. .......
T Consensus 35 E~~av~iaaG~~la-----tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh--~~~G~~t 107 (361)
T TIGR03297 35 EGAAVGLAAGAYLA-----TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQH--VKQGRIT 107 (361)
T ss_pred chHHHHHHHHHHHh-----cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchh--hHHhHHH
Confidence 57788888888887 2344444542222211 0111123334668999999987655 3211 1111 0001111
Q ss_pred h---hcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 99 T---RGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 99 ~---~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
. .+.+++...++. +.++..+++.+|++.+.+.++|+.+-+.-.
T Consensus 108 ~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~ 153 (361)
T TIGR03297 108 LSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVVRKG 153 (361)
T ss_pred HHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEEccc
Confidence 1 146999999853 566788899999999999999999887643
No 172
>PRK08611 pyruvate oxidase; Provisional
Probab=91.13 E-value=1.9 Score=45.65 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+.+. +.-..+++..|=|.++. .-++..|-..++|+|+|.-+-......... +...|.......+ .
T Consensus 58 mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~--~q~~d~~~l~~~itk~ 129 (576)
T PRK08611 58 AAAAYAKLT---GKIGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTDF--FQEVNLEKMFEDVAVY 129 (576)
T ss_pred HHHHHHHHh---CCceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCCC--ccccCHHHHhhcccce
Confidence 455555442 22233444457777653 245777888999999998765532211111 1112333332222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
..+|+ +++++.+++++|++.+...+||+.|++...
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 130 NHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 34554 688899999999998888889999999754
No 173
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=90.92 E-value=2.5 Score=36.84 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHH-HHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYN-IAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP 105 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~-~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~ 105 (355)
+.|.|+|+. + .+++++.. ..+.. ..++.|. .++.+++|+++++...+++............++.-. ..+|
T Consensus 53 g~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~-~~iP 123 (156)
T cd07033 53 GIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALL-RAIP 123 (156)
T ss_pred HHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHh-cCCC
Confidence 345555543 3 55666666 33332 3344454 889999999998886554432111111122233222 2445
Q ss_pred eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
++.| .=.|+.++...++.|++ .++|++|-+
T Consensus 124 g~~v~~Ps~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 124 NMTVLRPADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred CCEEEecCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 4433 23467777777776664 467998843
No 174
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=90.40 E-value=1.5 Score=46.54 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCcc--Hhhhc-
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTD--YYTRG- 101 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d--~~~~A- 101 (355)
++.+|+|+++| +..+++.+-=.+++- ..|.|.+|+-..+|+|+++.|-. +.++.........| +...+
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~l--m~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFAL--MTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChhH--hHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcCC
Confidence 46678888887 444555554444433 46889999999999888887664 22221111111122 22222
Q ss_pred CC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 102 DY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 102 ~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
.| .+.+.+.-.|+.++++...+|.+.+.+..-|+++-.... .+|+.
T Consensus 320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~--l~~~~ 366 (562)
T TIGR03710 320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQY--LANSY 366 (562)
T ss_pred CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechH--HhCCc
Confidence 11 334455566899999999999999988889999977664 35553
No 175
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=90.32 E-value=0.82 Score=42.94 Aligned_cols=110 Identities=19% Similarity=0.144 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC---cceeeccccCCCccHh-hh
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY---GMGTSAERSSASTDYY-TR 100 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~---~~~~~~~~~~~~~d~~-~~ 100 (355)
.+.+++|++++ ..+...+.-|-|= +. ..|.|-+++-.++|+++++.|-.. |+++... ..|+. .+
T Consensus 48 A~~~~~GAs~a-----G~ra~t~ts~~Gl-~l--m~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~~----q~D~~~~~ 115 (230)
T PF01855_consen 48 AMEAAIGASAA-----GARAMTATSGPGL-NL--MAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQPE----QDDLMAAR 115 (230)
T ss_dssp HHHHHHHHHHT-----T--EEEEEECCHH-HH--HCCCHHHHHHTT--EEEEEEEB---SSSB--SB-----SHHHHHTT
T ss_pred HHHHHHHHHhc-----CCceEEeecCCcc-cc--cHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcCC----hhHHHHHH
Confidence 45667888876 2233344444443 21 235578889999999888887542 2222211 12222 23
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 101 GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 101 A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
-.|+..+.. .|+.+.++....|.+.+.+..-|+++-....+ ..|+.
T Consensus 116 d~~~~vl~p--~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~-~sh~~ 161 (230)
T PF01855_consen 116 DSGWIVLAP--SSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL-CSHSR 161 (230)
T ss_dssp TSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC-CTC-E
T ss_pred hcCeEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEechhh-hcCcc
Confidence 346665544 47889999999999988888999999776643 23554
No 176
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=90.32 E-value=2.8 Score=44.01 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP-- 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~-- 105 (355)
+|.|.+.+. +.-..+++..|=|.++. .-++..|-.-+.|+|+|+-+-......... +...|.......+.
T Consensus 54 mAdgyar~t---gkpgv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKIT---GKPSACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMIGHDY--FQEVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHHh---CCCeEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCccccCCCc--ccccchhhhhccceeE
Confidence 345555442 22233444457776553 345777888999999998754322111111 11123333222222
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
..+|. +++++.+++++|++.+...+||+.|++..+
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 126 NQILI--NPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 33453 678899999999998888889999999754
No 177
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.21 E-value=1.8 Score=45.84 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.|.+ .+.-.++++..|=|+++- ...|.+|-.-+.|+|.|.-.=..... ....+-..|...+...+ .
T Consensus 54 mAdgyar~---TGkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~~~~~--g~~afQe~D~~~l~~p~tk~ 125 (550)
T COG0028 54 AADGYARA---TGKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVPTSLI--GTDAFQEVDQVGLFRPITKY 125 (550)
T ss_pred HHHHHHHH---cCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcccccc--CcchhhhcchhhHhhhhhee
Confidence 45555544 345566777788888753 34578888999999998762111110 00111112343333222 3
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
.++|. +++++.+.+++|++.|.+++ ||++|++..+
T Consensus 126 ~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 126 NFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 45664 68999999999999999877 9999999754
No 178
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=90.19 E-value=1.9 Score=43.48 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC---CcceeeccccCCCccHhhhc
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG---YGMGTSAERSSASTDYYTRG 101 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~---~~~~~~~~~~~~~~d~~~~A 101 (355)
++.+|+|+++| +.++++.+-=+++.- .+|.+.+++-.++|+++++.+-. -|+ +.............+
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~l--m~E~~~~a~~~e~P~V~~~~~R~GpstG~--p~~~~q~D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGISL--KAEQIGLGFIAEIPLVIVNVMRGGPSTGL--PTRVAQGDVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHHH--HhhHHHHHHhccCCEEEEEeccCCCcCCC--CCccchHHHHHHhcC
Confidence 46678888887 444555554444333 34778999999999988777643 222 221111112222222
Q ss_pred -CC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560 102 -DY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 102 -~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~ 150 (355)
+| .+-+.+.-.|+.++++...+|.+.+.+..-|+++-... +.+|+..
T Consensus 129 ~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~--~lsh~~~ 177 (375)
T PRK09627 129 THGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE--TVGHMYG 177 (375)
T ss_pred CCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch--HHhCCee
Confidence 22 33345566789999999999999988888899997766 3577653
No 179
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=89.94 E-value=2.7 Score=44.13 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=57.7
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHHHHH
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREA 120 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a 120 (355)
.++++..|=|.++. .-++..|-.-++|||+|.-.............+...|....... -...+|+ +++++.++
T Consensus 67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 141 (554)
T TIGR03254 67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG 141 (554)
T ss_pred EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence 34444557777653 23577888899999999875543210000111111233332222 2345665 68899999
Q ss_pred HHHHHHHHHcC-CCCeEEEEEee
Q psy14560 121 SKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 121 ~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
+++|++.++++ .||+.|++..+
T Consensus 142 i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 142 IARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHH
Confidence 99999988875 48999998753
No 180
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=89.92 E-value=3 Score=42.28 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhh-hcCC
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYT-RGDY 103 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~-~A~G 103 (355)
++.+|+|+++| +..+++.+-=.+++- .+|.|.+|+-.++|+|+++.|-... ++........|+.. +--|
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~l--m~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~g 130 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLAL--MHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDTG 130 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHHH--HhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhcC
Confidence 56778898887 445565554444433 4588999999999988887743322 22221111123221 2235
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
+-. .-..|+.+.++....|.+.+.+..-|+++-....+ ..|..
T Consensus 131 ~i~--~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~-~sh~~ 173 (390)
T PRK08366 131 WMQ--FYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFI-LSHTY 173 (390)
T ss_pred EEE--EeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcc-ccccc
Confidence 533 33368889999889999988888899999876543 44543
No 181
>PRK07064 hypothetical protein; Provisional
Probab=89.20 E-value=3.1 Score=43.53 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhcCCc--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYI-- 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A~G~-- 104 (355)
+|.|.+.+. +.-.++++..|=|.++. .-++..|-.-+.|||+++-+-. ..+...........|.......+
T Consensus 56 ~A~gyar~t---g~~~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARVS---GGLGVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHhc---CCCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 455555442 22234445557777653 3457778889999999987422 11110000000112333332221
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
...+|+ +++++.+++++|++.+... .||+.|++..+
T Consensus 130 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 130 AAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 244564 6888999999999988876 79999999753
No 182
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.90 E-value=3.8 Score=43.35 Aligned_cols=91 Identities=18% Similarity=0.111 Sum_probs=55.4
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhcCCcc--eEEEeCCCHHHHHHH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIP--GIWVDGMDVLAVREA 120 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A~G~~--~~~VdG~D~~~v~~a 120 (355)
++++..|=|.++. .-+|..|-..+.|||+|.-.-. ..... ..+...|.......+- ..+| .+++++.+.
T Consensus 67 v~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~~---~~~Q~~d~~~l~~~vtk~~~~v--~~~~~~~~~ 138 (579)
T TIGR03457 67 MVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIGL---GGFQEADQLPMFQEFTKYQGHV--RHPSRMAEV 138 (579)
T ss_pred EEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCCC---CCCcccchhhhhhcceeEEEec--CCHHHHHHH
Confidence 3444457777653 2357778889999999974322 11100 0011113222222222 3344 468899999
Q ss_pred HHHHHHHHHcCCCCeEEEEEee
Q psy14560 121 SKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 121 ~~~Al~~ar~~~gP~lIev~t~ 142 (355)
+++|++.+...+||+.|++...
T Consensus 139 i~~A~~~A~~~~GPV~l~iP~D 160 (579)
T TIGR03457 139 LNRCFERAWREMGPAQLNIPRD 160 (579)
T ss_pred HHHHHHHHhcCCCCEEEEeCcc
Confidence 9999999998889999999753
No 183
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=88.80 E-value=4.3 Score=42.78 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHHHHHH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREAS 121 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a~ 121 (355)
++++..|=|.++. .-++..|...++|||+|+-.-...........+...|....... -...+|+ +++++.+.+
T Consensus 75 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~~i 149 (569)
T PRK09259 75 VCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVN--RAEDIGIGV 149 (569)
T ss_pred EEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcC--CHHHHHHHH
Confidence 3444447777653 23577888899999999875432210000001111233322222 1244554 688999999
Q ss_pred HHHHHHHHcC-CCCeEEEEEee
Q psy14560 122 KFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 122 ~~Al~~ar~~-~gP~lIev~t~ 142 (355)
++|++.|..+ .||+.|++..+
T Consensus 150 ~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 150 ARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred HHHHHHhhhCCCCcEEEEeCHH
Confidence 9999998875 58999999743
No 184
>PRK07524 hypothetical protein; Provisional
Probab=88.58 E-value=3.4 Score=43.13 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=57.2
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec-cccCCCccHhhhcCC--cceEEEeCCCHHHHHHH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA-ERSSASTDYYTRGDY--IPGIWVDGMDVLAVREA 120 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~-~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a 120 (355)
.+++..|=|.++. .-++..|-.-++|||++.-.......... .......|....... -...+|+ +++++.+.
T Consensus 67 v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~~ 141 (535)
T PRK07524 67 VCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPEV 141 (535)
T ss_pred EEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHHH
Confidence 4444556666543 34577888899999999875442111000 000111233333222 2334554 68899999
Q ss_pred HHHHHHHHHcC-CCCeEEEEEee
Q psy14560 121 SKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 121 ~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
+++|++.+++. .||+.|++..+
T Consensus 142 l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 142 LARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHHHHHHhcCCCCcEEEEeCHh
Confidence 99999999876 69999999754
No 185
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=88.49 E-value=4 Score=43.24 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|-|.+.+. +.-.++++..|=|.++. .-++..|-..++|||+|.-.=......... +...|.......+ .
T Consensus 58 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~--~q~~d~~~l~~~~tk~ 129 (588)
T PRK07525 58 MADGYTRVT---GRMGMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIGQGG--FQEAEQMPMFEDMTKY 129 (588)
T ss_pred HHHHHHHHh---CCCEEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCCCCC--CcccchhhhhhhheeE
Confidence 455555442 22234444557777653 235777888999999998422211000000 1011222222222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
..+| .+++++.+++++|++.++...||+.|++...
T Consensus 130 ~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 130 QEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred EEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 3344 4688999999999999999999999999754
No 186
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=88.42 E-value=5.3 Score=42.19 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+.+. +.-.++++..|=|+++. .-+|..|-..++|||+|.-+=....... ......|.......+ .
T Consensus 64 ~Adgyar~t---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Q~~d~~~l~~~vtk~ 135 (578)
T PRK06112 64 MADGYARVS---GKVAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTDR--NAFQELDHIALFQSCTKW 135 (578)
T ss_pred HHHHHHHHh---CCCEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhhccccce
Confidence 344555442 22233444446666543 3457778889999999986432111000 001112333322222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|+ +++++.+.+++|++.++.+ .||+.|++...
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 136 VRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 34554 6888999999999988886 48999999754
No 187
>PRK07586 hypothetical protein; Validated
Probab=88.41 E-value=4 Score=42.34 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|-|.|... +.-.++++..|=|.++- .-++..|-.-+.|||+|.-+-....... ...-..|.......+ .
T Consensus 54 mAdgyar~t---g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk~ 125 (514)
T PRK07586 54 AADGYARMA---GKPAATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYHRKY--DAPLTSDIEALARPVSGW 125 (514)
T ss_pred HHHHHHHHH---CCCEEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhccCC--Ccccccchhhhhccccce
Confidence 455555442 22233444557776542 2346678889999999987543211100 001112333333222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|. +++++.+++++|++.++.+ .||+.|++..+
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 126 VRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 34554 6888999999999999886 69999999764
No 188
>PRK12474 hypothetical protein; Provisional
Probab=88.11 E-value=4.2 Score=42.34 Aligned_cols=105 Identities=17% Similarity=0.078 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|-|.+.+. +.-..+++..|=|.++- .-++..|-.-+.|||+|+-......... ..+-..|.......+ .
T Consensus 58 mAdgYaR~t---g~~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk~ 129 (518)
T PRK12474 58 AADGYGRIA---GKPAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVSRW 129 (518)
T ss_pred HHHHHHHHh---CCCEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhcccce
Confidence 455555542 22333455557776643 2346677888999999987543211100 000112343333222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..+| .+++++.+++++|++.+.+++ ||++|++..+
T Consensus 130 ~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 130 VHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 3344 478899999999999888765 8999999754
No 189
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=88.09 E-value=3.9 Score=43.06 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCCeEEE--EeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc-
Q psy14560 28 LGTGIAFAAQYKGTGGVCFA--LYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI- 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~--~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~- 104 (355)
+|.|.+.. .+++.+| ..|=|.++. .-++..|-..+.|||+|.-.-....... ..+...|.......+
T Consensus 58 ~Adgyar~-----tg~~gv~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 58 AADGYARA-----SGVPGVCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHh-----hCCCEEEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence 45555544 2344444 457777653 2457778889999999986533221100 001111222222222
Q ss_pred -ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 105 -PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 105 -~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
...+| .+++++.+++.+|++.++.++ ||+.|++..+
T Consensus 128 k~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 128 KYVIGI--KRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred eeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 23455 478889999999999888865 9999999753
No 190
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.05 E-value=4.3 Score=42.85 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|-|.+... +.-.++++..|=|.++. .-++..|-.-+.|||+|.-.-......... +-..|.......+ .
T Consensus 57 mAdgyar~t---g~~gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARAT---GKTGVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIGEDA--FQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCc--ccccchhhhhhcccee
Confidence 455555542 22234444557777653 345778888999999998754422111100 1112333332222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|+ +++++..++++|+..++.+ .||+.|++...
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 34554 6888999999999998887 49999999765
No 191
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=87.88 E-value=5.7 Score=42.19 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=57.8
Q ss_pred CCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHH
Q psy14560 42 GGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAV 117 (355)
Q Consensus 42 ~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v 117 (355)
+++.+|+ .|=|.++. .-+|..|-..+.|||+|.-.-......... +...|.......+ ...+|. +++++
T Consensus 66 g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~D~~~~~~~vtk~~~~v~--~~~~i 138 (588)
T TIGR01504 66 GNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIAAIAKPVSKMAVTVR--EAALV 138 (588)
T ss_pred CCeEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccCHHHHhhhhceEEEEcC--CHHHH
Confidence 3455554 46666543 235777888999999998654422211111 1112333332222 234554 68899
Q ss_pred HHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 118 REASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 118 ~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
.+++++|++.++.++ ||+.|++..+
T Consensus 139 ~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 139 PRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 999999999888764 8999999764
No 192
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=87.65 E-value=3.5 Score=43.23 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec---cccCCCc-cHhhhcCCc
Q psy14560 29 GTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA---ERSSAST-DYYTRGDYI 104 (355)
Q Consensus 29 AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~---~~~~~~~-d~~~~A~G~ 104 (355)
|-|.|.+. +.-.++++..|=|.++. .-++..|...++|||+|.-+-........ ..+.... +.......+
T Consensus 54 Adgyar~t---g~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (535)
T TIGR03394 54 ADAAARYR---GTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEV 127 (535)
T ss_pred HhHHHHhh---CCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhh
Confidence 55555442 22334455557777653 23577788899999999865432110000 0011001 222322222
Q ss_pred --ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 105 --PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 105 --~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
...+|. +++++.+++++|++.++..+||+.|++..+
T Consensus 128 tk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 128 TCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred eEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 233453 577888888999988888889999999865
No 193
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.39 E-value=4.1 Score=43.03 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|-|.+... +.-..+++..|=|.++. .-++..|-..+.|||+|.-+-....... ..+...|.......+ .
T Consensus 57 mAdgYar~t---g~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 128 (574)
T PRK07979 57 MADGLARAT---GEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIGY--DAFQECDMVGISRPVVKH 128 (574)
T ss_pred HHHHHHHHh---CCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccCC--CCCceecHHHHhhcccce
Confidence 455555442 22344555557777653 2357778889999999986533211110 011112333332222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..+|+ +++++..++++|++.++..+ ||+.|++..+
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 129 SFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 44564 78899999999999888874 9999999764
No 194
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=87.20 E-value=6.1 Score=35.12 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhcCC-CCeEEEEeCcccc-cccHHHHHHH-HHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc-
Q psy14560 26 VPLGTGIAFAAQYKGT-GGVCFALYGDGAS-NQGQNFEAYN-IAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG- 101 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~-~~G~~~EaL~-~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A- 101 (355)
++.|.|+|++ ++ ..+++..++|=.. .+-...+.+. ..+..++|+. |+..-+++.+.......+..|..-+.
T Consensus 61 vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~ 135 (178)
T PF02779_consen 61 VGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRS 135 (178)
T ss_dssp HHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHT
T ss_pred cceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccccccccccc
Confidence 4556676665 43 4555566666443 1123444444 6778899999 66665544332222223333443332
Q ss_pred C-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 102 D-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 102 ~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
. |+..+.- .|+.++..+++.+++. +.++|++|-..
T Consensus 136 iPg~~v~~P--sd~~e~~~~l~~a~~~--~~~~P~~ir~~ 171 (178)
T PF02779_consen 136 IPGMKVVVP--SDPAEAKGLLRAAIRR--ESDGPVYIREP 171 (178)
T ss_dssp STTEEEEE---SSHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred ccccccccC--CCHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence 2 4444432 4777777777766642 25789998654
No 195
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=86.97 E-value=5.3 Score=42.63 Aligned_cols=91 Identities=25% Similarity=0.350 Sum_probs=56.2
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc-ceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHHHHH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG-MGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAVREA 120 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v~~a 120 (355)
++++..|=|.++. .-+|..|..-+.|||+|.-+-... +.. ..+...|.......+ ...+|+ +++++.++
T Consensus 88 v~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~Qe~d~~~~~~~vtk~~~~v~--~~~~i~~~ 159 (616)
T PRK07418 88 VCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGT---DAFQETDIFGITLPIVKHSYVVR--DPSDMARI 159 (616)
T ss_pred EEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC---CCcccccHHHHhhhcceeEEEeC--CHHHHHHH
Confidence 3444447777653 235778888999999998743311 110 011112333322222 234554 68899999
Q ss_pred HHHHHHHHHcCC-CCeEEEEEee
Q psy14560 121 SKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 121 ~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
+++|++.|.+.+ ||+.|++..+
T Consensus 160 l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 160 VAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHHHHHHhcCCCCcEEEecchh
Confidence 999999998876 9999998753
No 196
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=86.97 E-value=5.4 Score=42.00 Aligned_cols=103 Identities=24% Similarity=0.281 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc-
Q psy14560 28 LGTGIAFAAQYKGTGGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI- 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~- 104 (355)
+|.|.+.+ .+++.+|+ .|=|.++. .-++..|-..+.|||+|.-.-....... ..+...|.......+
T Consensus 66 ~Adgyar~-----tg~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 66 IAQGMART-----TGKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHH-----cCCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence 45555554 23444444 46776543 2457778889999999986433211100 001111222222222
Q ss_pred -ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 105 -PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 105 -~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
...+|+ +++++...+++|++.++.. .||+.|++..+
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 234554 7889999999999998887 49999999754
No 197
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.80 E-value=5.6 Score=42.12 Aligned_cols=105 Identities=24% Similarity=0.238 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|-|.+... +.-..+++..|=|.++. .-++..|-..+.|||+|+-.-...... .......|....... -.
T Consensus 67 mAdgyar~t---g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 138 (570)
T PRK06725 67 AAEGYARAS---GKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVTKH 138 (570)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhcccee
Confidence 455555542 22234444557776543 245677778899999998643322110 011111233333222 22
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..+|+ +++++.+.+++|++.++..+ ||+.|++..+
T Consensus 139 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 139 NYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 34554 68899999999999998874 9999999754
No 198
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=86.80 E-value=3.8 Score=41.68 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=70.8
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhh-hcC
Q psy14560 24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYT-RGD 102 (355)
Q Consensus 24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~-~A~ 102 (355)
.++.+++|++++ +.++++.+-=.+++- .+|.|.+|+-.++|+++++.+-...-. .......+|+.. +.-
T Consensus 67 ~A~~~~~GAs~a------GaRa~TaTS~~Gl~l--m~E~l~~aa~~~~P~V~~~~~R~~~~~--~~i~~d~~D~~~~r~~ 136 (407)
T PRK09622 67 AAMSACVGAAAA------GGRVATATSSQGLAL--MVEVLYQASGMRLPIVLNLVNRALAAP--LNVNGDHSDMYLSRDS 136 (407)
T ss_pred HHHHHHHHHHhh------CcCEEeecCcchHHH--HhhHHHHHHHhhCCEEEEEeccccCCC--cCCCchHHHHHHHhcC
Confidence 346678888887 444555553333332 457899999999998888887664321 111111233322 223
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHHHcC--CCCeEEEEEeeeeCCCC
Q psy14560 103 YIPGIWVDGMDVLAVREASKFAVNYASSG--KGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 103 G~~~~~VdG~D~~~v~~a~~~Al~~ar~~--~gP~lIev~t~R~~GHs 148 (355)
|+.. +.-.++.++++....|.+.+.+. .-|+++-.... ..+|+
T Consensus 137 g~iv--l~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~-~~sh~ 181 (407)
T PRK09622 137 GWIS--LCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGF-LCSHT 181 (407)
T ss_pred CeEE--EeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechh-hhhCc
Confidence 5444 44568999999999999888665 78999877653 34664
No 199
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=86.80 E-value=4.5 Score=42.52 Aligned_cols=105 Identities=22% Similarity=0.221 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+.+. +.-..+++..|=|.++. .-++..|-..+.|||+|.-.=......... ....|.......+ .
T Consensus 61 ~Adgyar~t---g~~gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~l~~~~tk~ 132 (557)
T PRK08199 61 MAEAYGKLT---GRPGICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFREREA--FQEIDYRRMFGPMAKW 132 (557)
T ss_pred HHHHHHHhc---CCCEEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCc--ccccCHHHhhhhhhce
Confidence 355555442 22233444447777653 345777888999999998643211100000 1111222222121 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+| .+++++.+++++|++.+... .||+.|++..+
T Consensus 133 ~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 133 VAEI--DDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 3355 47889999999999998887 48999999754
No 200
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=86.76 E-value=5.2 Score=41.93 Aligned_cols=105 Identities=24% Similarity=0.263 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+... +.-..+++..|=|.++. .-++..|-.-++|||++.-.-......... ....|.......+ .
T Consensus 53 ~Adgyar~s---g~~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~tk~ 124 (548)
T PRK08978 53 AAIGYARAT---GKVGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGTDA--FQEIDVLGLSLACTKH 124 (548)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCC--CcccchhccccCceee
Confidence 345555442 22233444446766653 345777888999999998643321100000 0111222222222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|+ +++++..++++|++.++.. .||+.|++...
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 125 SFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred EEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 44664 6889999999999988886 49999999753
No 201
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=86.58 E-value=6.5 Score=41.94 Aligned_cols=105 Identities=25% Similarity=0.324 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+.+. +.-..+++..|=|.++. .-++..|-.-++|||+|.-.-....... ..+...|.......+ .
T Consensus 84 ~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 155 (612)
T PRK07789 84 AAEGYAQAT---GRVGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIGT--DAFQEADIVGITMPITKH 155 (612)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--CcCcccchhhhhhcceeE
Confidence 445555442 22233444456666553 3457778888999999986433211100 011112333332222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|+ +++++.+++++|+..++.+ .||+.|++..+
T Consensus 156 s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 156 NFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 33554 7889999999999988876 58999999754
No 202
>PRK08322 acetolactate synthase; Reviewed
Probab=86.49 E-value=5.4 Score=41.72 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+.+. +.-..+++..|=|.++. .-++..|-.-++|+|+|.-+=....... ..+...|.......+ .
T Consensus 53 ~A~gyar~t---g~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 124 (547)
T PRK08322 53 MAATYGRLT---GKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQ--GSFQIVDVVAMMAPLTKW 124 (547)
T ss_pred HHHHHHHhh---CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCC--CccccccHHHHhhhheeE
Confidence 455555442 22223344446666543 2457778889999999986433211111 011112333322221 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|+ +++++.+++++|++.+... .||+.|++...
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 125 TRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 34554 6889999999999998886 48999999754
No 203
>PLN02470 acetolactate synthase
Probab=86.38 E-value=5.7 Score=42.08 Aligned_cols=105 Identities=27% Similarity=0.281 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+... +.-..+++..|=|.++- .-++..|-.-+.|||+|.-.-...... ...+...|.......+ .
T Consensus 66 ~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 137 (585)
T PLN02470 66 AAEGYAKAS---GKVGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSITKH 137 (585)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhhcC--CCcCcccchhhhhhhheEE
Confidence 455555542 22234445557777653 245777888999999998644321100 0011112222222221 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..+|+ +++++.+++++|++.++.++ ||+.|++..+
T Consensus 138 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 138 NYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred EEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 34553 78899999999999998875 9999999754
No 204
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=86.27 E-value=5.8 Score=41.87 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI-- 104 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~-- 104 (355)
-+|.|.+.+. +.-.++++..|=|.++. .-++..|-.-++|||+|.-.-......... .-..|.......+
T Consensus 67 ~~A~gyar~t---g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~--~q~~d~~~l~~~~tk 138 (571)
T PRK07710 67 HAAEGYARIS---GKPGVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATSVIGSDA--FQEADIMGITMPVTK 138 (571)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCccccCCCC--ccccchhhhhhcccc
Confidence 3455555442 22233444446766543 245677778899999998754422111000 1111332222221
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
...+| .+++++...+++|++.++.+ .||+.|++..+
T Consensus 139 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 139 HNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred eEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 23455 46888999999999988877 49999999764
No 205
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=85.62 E-value=7.3 Score=41.12 Aligned_cols=103 Identities=13% Similarity=-0.044 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc-
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI- 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~- 104 (355)
+|.|.+.+ .+++.||+. |=|.++- .-++..|..-++|+|+|.-+-......... +...|.......+
T Consensus 56 ~Adgyar~-----tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~--~Q~~d~~~l~~~it 125 (574)
T PRK09124 56 AAGAEAQL-----TGELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSGY--FQETHPQELFRECS 125 (574)
T ss_pred HHHHHHHh-----hCCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCC--ccccChhhhcccce
Confidence 45555544 245566654 5555542 234677778899999998753321110000 1111222222222
Q ss_pred -ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 105 -PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 105 -~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
...+|+ +++++.+++++|++.+...+||+.|++..+
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 233454 678888889999998888889999998643
No 206
>PRK11269 glyoxylate carboligase; Provisional
Probab=85.38 E-value=7.3 Score=41.32 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=56.1
Q ss_pred EEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHHHHHHH
Q psy14560 45 CFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAVREASK 122 (355)
Q Consensus 45 vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v~~a~~ 122 (355)
+++..|=|.++. .-++..|-.-+.|||+|.-+-......... +...|.......+ ...+| .+++++.++++
T Consensus 72 ~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~d~~~l~~~itk~s~~v--~~~~~~~~~i~ 144 (591)
T PRK11269 72 CIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIESIAKPVTKWAVTV--REPALVPRVFQ 144 (591)
T ss_pred EEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccChhhHhhcceeEEEEc--CCHHHHHHHHH
Confidence 344447766653 235777888999999998754422111111 1112333332222 23455 46888999999
Q ss_pred HHHHHHHcCC-CCeEEEEEee
Q psy14560 123 FAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 123 ~Al~~ar~~~-gP~lIev~t~ 142 (355)
+|++.++..+ ||+.|++..+
T Consensus 145 ~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 145 QAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred HHHHHHhhCCCCeEEEEeChh
Confidence 9999998764 8999999754
No 207
>PRK08266 hypothetical protein; Provisional
Probab=85.10 E-value=6.7 Score=41.02 Aligned_cols=106 Identities=19% Similarity=0.110 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccC-CCccHhhhcCC--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSS-ASTDYYTRGDY-- 103 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~-~~~d~~~~A~G-- 103 (355)
+|.|.+... +.-..+++..|=|.++. .-++..|-.-+.|+|+|+-.=. ..... ...+. ...|.......
T Consensus 58 ~A~gyar~t---g~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~-~~~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 58 MAFGYARST---GRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGK-GRGHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccC-CCCcceecccHhhHHhhhc
Confidence 455555442 22223344457777653 2457778889999999986422 11110 00000 01233332221
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
-...+|+ +++++.+++++|++.++.. .||+.|++..+
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 2345664 5788899999999888774 68999999764
No 208
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=85.02 E-value=7.7 Score=41.05 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=55.6
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCCccHhhhcCCcc--eEEEeCCCHHHHHH
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSASTDYYTRGDYIP--GIWVDGMDVLAVRE 119 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~A~G~~--~~~VdG~D~~~v~~ 119 (355)
..+++..|=|.++- .-++..|-..++|||+|.-.-.. ..... .+...|.......+- ..+|. +++++.+
T Consensus 65 gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~id~~~~~~~vtk~~~~v~--~~~~~~~ 136 (575)
T TIGR02720 65 GVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMNMD---TFQEMNENPIYADVAVYNRTAM--TAESLPH 136 (575)
T ss_pred eEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---CcceechhhhhhhcceEEEEeC--CHHHHHH
Confidence 34444557766543 23577788899999999875432 11110 011112222222222 23443 5778888
Q ss_pred HHHHHHHHHHcCCCCeEEEEEee
Q psy14560 120 ASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 120 a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.+++|++.+...+||+.|++..+
T Consensus 137 ~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 137 VIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred HHHHHHHHHhhCCCCEEEEECcc
Confidence 89999988888899999999765
No 209
>PTZ00089 transketolase; Provisional
Probab=84.86 E-value=5.8 Score=42.92 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=57.6
Q ss_pred CCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceEEE-eCCCHHHHHHH
Q psy14560 42 GGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWV-DGMDVLAVREA 120 (355)
Q Consensus 42 ~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~~V-dG~D~~~v~~a 120 (355)
-+++++.+. .+.+ -.++.+..++..++||+||....+.+.+.......+..|++-+ ..+|.+.| .=.|..++..+
T Consensus 428 ~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~l-R~iPn~~V~~PaD~~E~~~~ 503 (661)
T PTZ00089 428 FIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALL-RATPNLLVIRPADGTETSGA 503 (661)
T ss_pred CeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHH-hcCCCcEEEecCCHHHHHHH
Confidence 356666653 4544 6777899999999999999998887654333333333454432 13444433 12467777776
Q ss_pred HHHHHHHHHcCCCCeEEEEE
Q psy14560 121 SKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 121 ~~~Al~~ar~~~gP~lIev~ 140 (355)
++.|++ ..++|+.|-..
T Consensus 504 l~~al~---~~~gP~~irl~ 520 (661)
T PTZ00089 504 YALALA---NAKTPTILCLS 520 (661)
T ss_pred HHHHHH---cCCCCEEEEec
Confidence 666653 35689998543
No 210
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=84.79 E-value=6.3 Score=39.59 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=69.8
Q ss_pred ccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee-ccccCCCccHhh-h
Q psy14560 23 GAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS-AERSSASTDYYT-R 100 (355)
Q Consensus 23 G~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~-~~~~~~~~d~~~-~ 100 (355)
..++..++|++++ .-+..-...|.|-+- .+|.|..|+-..+|+++++.+........ ... ...|+.. +
T Consensus 57 ~~a~s~v~GA~~a-----Gar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~r 126 (365)
T COG0674 57 IGAISAVIGASYA-----GARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAAR 126 (365)
T ss_pred HHHHHHHHHHHhh-----CcceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHHH
Confidence 3567778898887 334455556666543 35789999999999999988877433211 111 1123322 2
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 101 GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 101 A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
--|++-+... |+.+.+...-.|.+.|.+..-|+++-..-.
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~ 166 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGF 166 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccc
Confidence 2377777665 677777777778888877778988865543
No 211
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=84.26 E-value=7.4 Score=41.25 Aligned_cols=106 Identities=21% Similarity=0.175 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--c
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--I 104 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~ 104 (355)
-+|.|.+.+. +.-..+++..|=|.++. .-++..|-..+.|||+|.-.-...... .......|....... -
T Consensus 52 ~~Adgyar~t---g~~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~tk 123 (586)
T PRK06276 52 HAADGYARAS---GKVGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKLIG--NDAFQEIDALGIFMPITK 123 (586)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCccccC--CCCCccccHhhHHhhhcc
Confidence 3455555542 22233444456776653 245777888999999998532211100 000111133232222 2
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
...+|+ +++++..++++|++.|... .||+.|++..+
T Consensus 124 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 124 HNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred eEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 234554 6788999999999998876 48999999754
No 212
>PRK08617 acetolactate synthase; Reviewed
Probab=84.26 E-value=7.4 Score=40.82 Aligned_cols=94 Identities=20% Similarity=0.064 Sum_probs=55.9
Q ss_pred CCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHH
Q psy14560 42 GGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAV 117 (355)
Q Consensus 42 ~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v 117 (355)
+++.+|+ .|=|.++. .-++..|-.-+.|||+|.-........... +...|....... -...+|+ +++++
T Consensus 66 g~~gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~~--~q~~d~~~l~~~~tk~~~~v~--~~~~~ 138 (552)
T PRK08617 66 GKPGVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKRT--HQSMDNVALFRPITKYSAEVQ--DPDNL 138 (552)
T ss_pred CCCEEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCCC--ccccchhhhhhhhcceEEEeC--CHHHH
Confidence 4444444 47777653 235777888999999998643311100000 111122222112 1244554 68899
Q ss_pred HHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 118 REASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 118 ~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
.+++++|++.+... .||+.|++..+
T Consensus 139 ~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 139 SEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred HHHHHHHHHHHccCCCCcEEEeChhh
Confidence 99999999988876 48999999754
No 213
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.07 E-value=8 Score=40.77 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=55.3
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHHHHHH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREAS 121 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a~ 121 (355)
++++..|=|.++. .-++..|-..+.|||+|.-.-......... ....|....... -...+|. +++++...+
T Consensus 70 v~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~--~q~~d~~~l~~~vtk~s~~v~--~~~~~~~~l 142 (574)
T PRK06882 70 CVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTDA--FQECDMLGISRPVVKHSFIVK--NAEDIPSTI 142 (574)
T ss_pred EEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccchhhhhhcccceEEEeC--CHHHHHHHH
Confidence 3444447766543 235677888999999998654322110000 111233322222 1244564 688889999
Q ss_pred HHHHHHHHcC-CCCeEEEEEee
Q psy14560 122 KFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 122 ~~Al~~ar~~-~gP~lIev~t~ 142 (355)
++|++.++.. .||+.|++...
T Consensus 143 ~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 143 KKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred HHHHHHHhcCCCCCEEEecCHH
Confidence 9999888775 59999999764
No 214
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.05 E-value=6.6 Score=41.77 Aligned_cols=105 Identities=23% Similarity=0.232 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|-|.+... +.-..+++..|=|.++. .-++..|-..+.|||+|.-+-....... ..+...|.......+ .
T Consensus 64 mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 135 (595)
T PRK09107 64 AAEGYARST---GKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH 135 (595)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE
Confidence 455555432 22233444457777653 2357778889999999987544221110 011112322222221 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|+ +++++.+++++|++.++.. .||+.|++..+
T Consensus 136 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 136 NWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred EEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCCC
Confidence 33554 6889999999999999887 49999998754
No 215
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.02 E-value=8.8 Score=40.56 Aligned_cols=105 Identities=24% Similarity=0.298 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|-|.+... +.-.++++..|=|.++. .-++..|-..+.|||+|.-.-...... ...+...|.......+ .
T Consensus 57 mAdgyar~t---g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~ 128 (572)
T PRK08979 57 MADGYARAT---GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVVKH 128 (572)
T ss_pred HHHHHHHHh---CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhceeE
Confidence 455555542 22233333447776553 234677778899999997643321100 0011112333322222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..+|+ +++++...+++|++.|+.++ ||+.|++..+
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 129 SFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred EEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 34554 68899999999999988865 9999998754
No 216
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=83.85 E-value=9.3 Score=39.94 Aligned_cols=93 Identities=23% Similarity=0.128 Sum_probs=55.6
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc--eEEEeCCCHHHHHHH
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP--GIWVDGMDVLAVREA 120 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~--~~~VdG~D~~~v~~a 120 (355)
..+++..|=|.++- .-++..|-..+.|+|+|+-.-....... ..+...|.......+. ..++ .+++++.+.
T Consensus 63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~~~~~~tk~~~~i--~~~~~~~~~ 135 (539)
T TIGR02418 63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLLK--LTHQSMDNVALFRPITKYSAEV--QDPDALSEV 135 (539)
T ss_pred eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCccccccc--Ccccccchhhhhhcceeeeeec--CCHHHHHHH
Confidence 33444456666543 3457778889999999987433111000 0111122222222222 2344 478899999
Q ss_pred HHHHHHHHHcC-CCCeEEEEEee
Q psy14560 121 SKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 121 ~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
+++|++.++.. .||+.|++..+
T Consensus 136 ~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 136 VANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred HHHHHHHHhcCCCCCEEEEcChh
Confidence 99999888876 48999999764
No 217
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=83.63 E-value=10 Score=39.54 Aligned_cols=106 Identities=15% Similarity=0.023 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+.+. +.-..+++..|=|.++ ..-++..|-.-+.|||+|.-.-.+........+ ...|.......+ .
T Consensus 63 ~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~ 135 (530)
T PRK07092 63 MADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKW 135 (530)
T ss_pred HHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccc
Confidence 455555542 2223333344666653 234577888899999988764332211000000 111222221111 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..+| .+++++.+++++|++.++..+ ||+.|++..+
T Consensus 136 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 136 SIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 3344 468899999999999888874 7999999754
No 218
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=83.40 E-value=5.4 Score=42.42 Aligned_cols=105 Identities=18% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc---
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--- 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--- 104 (355)
+|-|.+.+. +.-..+++..|=|+++. .-++..|-.-++|||+|.-+=..... ....+...|.......+
T Consensus 57 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt~k 128 (597)
T PRK08273 57 MAVAHAKFT---GEVGVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVAGA 128 (597)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHHHH
Confidence 455555442 22233444457777653 23567788899999999853221100 00011112222222222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
...+|+ +++++.+++++|++.+...+||+.|++..+
T Consensus 129 ~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 129 FVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 234554 688899999999999988889999999765
No 219
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=83.36 E-value=9.8 Score=39.95 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|.|.+... +.-..+++..|=|.++- .-++..|-.-++|||+|.-.-....... ......|....... ..
T Consensus 54 ~Adgyar~t---g~~gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 125 (558)
T TIGR00118 54 AADGYARAS---GKVGVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIGS--DAFQEADILGITMPITKH 125 (558)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC--CCCcccChhhhhcCccce
Confidence 455555442 22234455557776543 3457778889999999986422111000 00111133332222 23
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|+ +++++.+.+++|++.+... .||+.|++..+
T Consensus 126 ~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 126 SFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 45664 6888999999999988887 48999999754
No 220
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=82.72 E-value=8.5 Score=41.62 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCe
Q psy14560 58 QNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPL 135 (355)
Q Consensus 58 ~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~ 135 (355)
-.++++..++..++||++|....+++.+.......+..|++-. +. |+..++- .|..++..+++.|++ ..++|+
T Consensus 434 r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~P--aD~~E~~~~~~~a~~---~~~gP~ 508 (653)
T TIGR00232 434 YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRP--CDGNETAAAWKYALE---SQDGPT 508 (653)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh---cCCCcE
Confidence 5567888899999999999988887654332233333444432 22 4444432 367777777776663 357899
Q ss_pred EEEE
Q psy14560 136 VLEV 139 (355)
Q Consensus 136 lIev 139 (355)
+|-.
T Consensus 509 ~irl 512 (653)
T TIGR00232 509 ALIL 512 (653)
T ss_pred EEEE
Confidence 8844
No 221
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=82.64 E-value=9.1 Score=41.11 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
+.|.|+|++ .-+++++++. .+.+-.+-...+-++..++||++++...++. ...........|++-. ..+|+
T Consensus 366 g~AaGlA~~-----G~~Pvv~~~a--~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~dia~l-r~iPg 436 (617)
T TIGR00204 366 TFAAGMAIE-----GYKPFVAIYS--TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDISYL-RCIPN 436 (617)
T ss_pred HHHHHHHHC-----CCEEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHHHHH-hcCCC
Confidence 345565542 3466666653 3444222233466788999999998877653 1111122222344332 24454
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
++| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 437 l~V~~Psd~~e~~~~l~~a~~---~~~~Pv~ir~ 467 (617)
T TIGR00204 437 MVIMAPSDENELRQMLYTGYH---YDDGPIAVRY 467 (617)
T ss_pred cEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 433 22467777777776663 2348998844
No 222
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=82.50 E-value=12 Score=39.49 Aligned_cols=105 Identities=25% Similarity=0.274 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.+... +.-..+++..|=|.++. .-+|..|-.-+.|||+|.-.-...... .......|.......+ .
T Consensus 60 ~Adgyar~t---g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~ 131 (561)
T PRK06048 60 AADGYARAT---GKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPITKH 131 (561)
T ss_pred HHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcceE
Confidence 455555442 22233444557777653 245777888999999997532211100 0001112333322222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|. +++++.+++++|++.++.. .||+.|++..+
T Consensus 132 s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 132 NYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 34554 6888999999999988876 58999999753
No 223
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=82.16 E-value=12 Score=39.63 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCCccHhhhcCC--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSASTDYYTRGDY--I 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~A~G--~ 104 (355)
+|-|.+... +.-..+++..|=|.++. .-++..|-..++|||+|.-+-.. ..... .+...|....... .
T Consensus 63 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~itk 133 (566)
T PRK07282 63 EAEGYAKST---GKLGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD---AFQEADIVGITMPITK 133 (566)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC---CccccChhchhcCCCc
Confidence 445555432 22334455557777653 23567777889999999875432 11110 0111122222211 1
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
...+|+ +++++.+++++|++.++.++ ||+.|++..+
T Consensus 134 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 134 YNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 234554 68889999999999998864 9999998754
No 224
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=81.85 E-value=14 Score=37.59 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=69.5
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHh-hhcC
Q psy14560 24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYY-TRGD 102 (355)
Q Consensus 24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~-~~A~ 102 (355)
.++.+++|++++ +..+++.+-=.+++- .+|.|..|+-.++|+++++.|=..+. +........|+. .+..
T Consensus 61 aA~~~~~GAs~a------GaRa~TaTS~~Gl~l--m~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~~~rd~ 130 (394)
T PRK08367 61 SAISACVGASAA------GVRTFTATASQGLAL--MHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTISQRDT 130 (394)
T ss_pred HHHHHHHHHHhh------CCCeEeeeccchHHH--HhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHHhcccc
Confidence 356678888887 444555553333322 45789999999999999885543332 222111112322 2223
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHHHc--CCCCeEEEEEeeeeCCCCC
Q psy14560 103 YIPGIWVDGMDVLAVREASKFAVNYASS--GKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 103 G~~~~~VdG~D~~~v~~a~~~Al~~ar~--~~gP~lIev~t~R~~GHs~ 149 (355)
|+-.+. ..|+.++++....|.+.+.+ ..-|+++-....+ .+|+.
T Consensus 131 g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~-~sH~~ 176 (394)
T PRK08367 131 GWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFI-LTHTV 176 (394)
T ss_pred CeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhh-hcCcc
Confidence 544433 36888999888888888874 3469999877754 56654
No 225
>PRK05858 hypothetical protein; Provisional
Probab=81.47 E-value=11 Score=39.39 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY-- 103 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G-- 103 (355)
+|.|.+.+ .+++.+|++ |=|.++. .-++..|..-+.|||+|.-+-..........+ ..|.......
T Consensus 57 ~AdGyar~-----tg~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~t 126 (542)
T PRK05858 57 AAEAWAKL-----TRVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHh-----cCCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhh
Confidence 45555544 234444444 5555543 34577888899999988754332110000011 1122222211
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
-...+|+ +++++.+.+++|++.+... .||+.|++..+
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 2344554 5788999999999888775 58999998753
No 226
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=80.09 E-value=15 Score=38.93 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|-|.+.+. +.-..+++..|=|.++. .-++..|-..++|||+|.-.=...... ...+...|....... -.
T Consensus 74 ~AdgYar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 145 (587)
T PRK06965 74 AADGYARAT---GKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIVKH 145 (587)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCcce
Confidence 455555542 22223444446666543 235677888899999997532111000 000111233222221 12
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|. +++++.+.+++|++.++.+ .||+.|++..+
T Consensus 146 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 146 NFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 44554 6888999999999999887 49999999764
No 227
>PRK06154 hypothetical protein; Provisional
Probab=79.84 E-value=18 Score=38.33 Aligned_cols=91 Identities=23% Similarity=0.176 Sum_probs=55.9
Q ss_pred CeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHHH
Q psy14560 43 GVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAVR 118 (355)
Q Consensus 43 ~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v~ 118 (355)
++.+|+ .|=|.++- .-++..|..-+.|||+|.-......... ....+.......+ ...+|+ +++++.
T Consensus 81 ~~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~----~~~~d~~~~~~~vtk~~~~v~--~~~~~~ 151 (565)
T PRK06154 81 RVGVFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGSTDV----APNFESLRNYRHITKWCEQVT--LPDEVP 151 (565)
T ss_pred CCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccccC----CCCcchhhhHhhcceeEEECC--CHHHHH
Confidence 555554 47776553 3457788889999999986443211000 0001111211222 233554 688999
Q ss_pred HHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 119 EASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 119 ~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
+.+++|++.++++ .||+.|++..+
T Consensus 152 ~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 152 ELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHHHhcCCCceEEEecchH
Confidence 9999999998875 69999999764
No 228
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=79.41 E-value=9.8 Score=40.20 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=56.6
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec----c--ccCCC-ccHhhhcCCc--ceEEEeCCCH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA----E--RSSAS-TDYYTRGDYI--PGIWVDGMDV 114 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~----~--~~~~~-~d~~~~A~G~--~~~~VdG~D~ 114 (355)
.+++..|=|.++. .-+|..|-.-+.|||+|.-+-........ . ..+.. .|.......+ ...+|+ ++
T Consensus 78 v~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~--~~ 152 (569)
T PRK08327 78 AVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIR--RG 152 (569)
T ss_pred EEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccC--CH
Confidence 3444457766543 34577888899999999876442211000 0 00111 1332222221 233554 68
Q ss_pred HHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 115 LAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 115 ~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
+++.+++.+|++.++.+ +||+.|++..+
T Consensus 153 ~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 153 DQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 89999999999998875 69999999743
No 229
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.37 E-value=16 Score=38.57 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=54.4
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHHHHH
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAVREA 120 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v~~a 120 (355)
..+++..|=|.++. .-++..|-..+.|||+|.-.=..... ........|.......+ ...+| ++++++.++
T Consensus 68 gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~i~~~ 140 (563)
T PRK08527 68 GVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCVKHNYLV--KSIEELPRI 140 (563)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhcccceEEEc--CCHHHHHHH
Confidence 33444457777653 23567778899999999753211100 00001111222221111 23355 478999999
Q ss_pred HHHHHHHHHcCC-CCeEEEEEee
Q psy14560 121 SKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 121 ~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
+++|++.++.++ ||+.|++..+
T Consensus 141 l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 141 LKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHh
Confidence 999999988765 8999998754
No 230
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=79.18 E-value=12 Score=40.64 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=50.8
Q ss_pred CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceEEE-eCCCHHHHHH
Q psy14560 41 TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWV-DGMDVLAVRE 119 (355)
Q Consensus 41 ~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~~V-dG~D~~~v~~ 119 (355)
.-+++++++.+ +.+=.+-..++-++..++||+|++...++.. ..........|++-. ..+|.++| .=.|+.++..
T Consensus 421 G~kPvv~~fs~--Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg-~dG~TH~~~~Dia~l-r~iPnl~V~~Psd~~E~~~ 496 (677)
T PLN02582 421 GLKPFCAIYSS--FLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGAFDVTYM-ACLPNMVVMAPSDEAELFH 496 (677)
T ss_pred CCeEEEEecHH--HHHHHHHHHHHHHHhcCCCEEEEEECCCccc-CCCCcccccHHHHHH-hcCCCCEEEeeCCHHHHHH
Confidence 35777777644 4332233345777889999999988766422 111112222344322 13444433 1236777777
Q ss_pred HHHHHHHHHHcCCCCeEEEE
Q psy14560 120 ASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 120 a~~~Al~~ar~~~gP~lIev 139 (355)
+++.|+. ..++|++|-.
T Consensus 497 ~l~~al~---~~~gPv~IR~ 513 (677)
T PLN02582 497 MVATAAA---IDDRPSCFRY 513 (677)
T ss_pred HHHHHHh---CCCCCEEEEE
Confidence 7776663 2358999854
No 231
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=79.00 E-value=23 Score=37.47 Aligned_cols=94 Identities=15% Similarity=0.004 Sum_probs=55.1
Q ss_pred CCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHH
Q psy14560 42 GGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAV 117 (355)
Q Consensus 42 ~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v 117 (355)
+++.+|+ .|=|.++. .-++..|-.-+.|||+|.-+-......... +...|.......+ ...+|+ +++++
T Consensus 65 gk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~--~Qe~d~~~l~~~~tk~~~~v~--~~~~~ 137 (578)
T PRK06546 65 GKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSGF--FQETHPDRLFVECSGYCEMVS--SAEQA 137 (578)
T ss_pred CCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCC--ccccChhhhcccceeeEeEeC--CHHHH
Confidence 3455555 46666542 234677888999999998642211100000 0011222221111 234554 67888
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 118 REASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 118 ~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.+++++|++.+....||+.|++..+
T Consensus 138 ~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 138 PRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChh
Confidence 9999999999988889999998753
No 232
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=78.75 E-value=12 Score=40.03 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHH--HcCCCEEEEEEeCCCcceeeccccCCCcc-Hhhhc
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK--LWGIPCIYVCENNGYGMGTSAERSSASTD-YYTRG 101 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa--~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d-~~~~A 101 (355)
++.+++|+++| +..+++.+--.+++- ..|.|-.++ -..+|+++++-|..--.++... ..| +..+-
T Consensus 58 a~~~~~GAs~a------G~ra~t~ts~~Gl~~--~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~~~~----q~d~~~~~~ 125 (595)
T TIGR03336 58 AVEVAAGAAWS------GLRAFCTMKHVGLNV--AADPLMTLAYTGVKGGLVVVVADDPSMHSSQNE----QDTRHYAKF 125 (595)
T ss_pred HHHHHHHHHhc------CcceEEEccCCchhh--hHHHhhhhhhhcCcCceEEEEccCCCCccchhh----HhHHHHHHh
Confidence 45568888887 334444443333322 335555555 3367777777764211111111 112 22233
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 102 DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 102 ~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
.+++.+. -.|+.++++...+|++.+.+.+-|+++-... ..+|+.
T Consensus 126 ~~~~vl~--p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~ 169 (595)
T TIGR03336 126 AKIPCLE--PSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMR 169 (595)
T ss_pred cCCeEEC--CCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccce
Confidence 4777544 3478999999999999999899999998864 466664
No 233
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=78.64 E-value=18 Score=38.39 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=54.7
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHHHHH
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREA 120 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a 120 (355)
.+++..|=|.++. .-+|..|-.-+.|||+|.-.-. ..+... .+...|....... -...+|+ +++++.++
T Consensus 79 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~~~~~~tk~~~~v~--~~~~i~~~ 150 (585)
T CHL00099 79 VCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD---AFQEVDIFGITLPIVKHSYVVR--DARDISRI 150 (585)
T ss_pred EEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---CccccchhhhhcCceeEEEEeC--CHHHHHHH
Confidence 3444447776653 2357778889999999986422 111100 0111122222222 1234564 68899999
Q ss_pred HHHHHHHHHcC-CCCeEEEEEee
Q psy14560 121 SKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 121 ~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
+++|++.++.. .||+.|++..+
T Consensus 151 l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 151 VAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred HHHHHHHHccCCCCeEEEecChh
Confidence 99999988875 48999998754
No 234
>PLN02790 transketolase
Probab=78.56 E-value=14 Score=40.00 Aligned_cols=91 Identities=21% Similarity=0.180 Sum_probs=53.5
Q ss_pred CCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceEEE-eCCCHHHHHHH
Q psy14560 42 GGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWV-DGMDVLAVREA 120 (355)
Q Consensus 42 ~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~~V-dG~D~~~v~~a 120 (355)
-+++++.+. .+.. ...+++..++..++||+||....+.+.+.......+..|++-+ ..+|.+.| .=.|..++..+
T Consensus 418 ~~P~~~tf~--~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~l-R~iPnl~V~~PaD~~E~~~~ 493 (654)
T PLN02790 418 LIPYCATFF--VFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASL-RAMPNILMLRPADGNETAGA 493 (654)
T ss_pred cEEEEEecH--HHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHh-cCCCCcEEEeCCCHHHHHHH
Confidence 455555442 1222 3556788889999999999998887654322333333444432 13444433 22467777777
Q ss_pred HHHHHHHHHcCCCCeEEEE
Q psy14560 121 SKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 121 ~~~Al~~ar~~~gP~lIev 139 (355)
++.|++ ..++|+.|-.
T Consensus 494 l~~al~---~~~gP~~irl 509 (654)
T PLN02790 494 YKVAVT---NRKRPTVLAL 509 (654)
T ss_pred HHHHHH---cCCCCEEEEe
Confidence 766653 2468988854
No 235
>PLN02573 pyruvate decarboxylase
Probab=78.10 E-value=18 Score=38.43 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec---cccCCCccH---hhhc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA---ERSSASTDY---YTRG 101 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~---~~~~~~~d~---~~~A 101 (355)
+|-|.+.+. + -..+++..|=|+++- .-++..|-.-+.|||+|.-.-........ ......+++ ....
T Consensus 69 mAdgyaR~t---g-~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARAR---G-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHHh---C-CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 345555442 3 345566667777652 23467778899999999875442211000 000000111 1111
Q ss_pred CC--cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 102 DY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 102 ~G--~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.. -...+|. +++++.+.+++|++.|+..+||+.|++..+
T Consensus 142 ~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 142 QTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred hceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 11 1234554 688888999999999988889999999764
No 236
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=77.41 E-value=15 Score=38.95 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHH-HHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc-C-Cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFE-AYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG-D-YI 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A-~-G~ 104 (355)
+|.|+|+. .-++++.++.+ +.. ..+| ..+.++..++|++++....++.. ..........|++-.. . |+
T Consensus 336 ~A~GlA~~-----G~~p~~~~f~~--F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g-~dG~tH~~~edia~lr~iP~l 406 (580)
T PRK05444 336 FAAGLATE-----GLKPVVAIYST--FLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVG-ADGPTHQGAFDLSYLRCIPNM 406 (580)
T ss_pred HHHHHHHC-----CCeeEEEeeHH--HHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCC-CCCccccccHHHHHHhcCCCC
Confidence 45555552 34556655544 433 3444 45557889999999998666432 1111222233443332 1 44
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
..+.- .|+.++..+++.|++. .++|++|-.
T Consensus 407 ~V~~P--sd~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 407 VIMAP--SDENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred EEEee--CCHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 44432 4777877777777642 368998854
No 237
>PRK12753 transketolase; Reviewed
Probab=77.03 E-value=16 Score=39.72 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=56.2
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh-cC-CcceEEEeCCCHHHHHHH
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR-GD-YIPGIWVDGMDVLAVREA 120 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~-A~-G~~~~~VdG~D~~~v~~a 120 (355)
.++++.+. .+.+ -.++.+..++..++||++|....+++.........+..|++-. +. ++.+++- .|..++..+
T Consensus 428 ~P~~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~P--aD~~E~~~~ 502 (663)
T PRK12753 428 VPYTATFL--MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRP--CDQVEAAVA 502 (663)
T ss_pred eEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEcc--CCHHHHHHH
Confidence 45555543 4444 6788898999999999999999987764433333344455432 22 4444432 366777777
Q ss_pred HHHHHHHHHcCCCCeEEEE
Q psy14560 121 SKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 121 ~~~Al~~ar~~~gP~lIev 139 (355)
++.|++. .++|+.|-+
T Consensus 503 ~~~al~~---~~gP~~irl 518 (663)
T PRK12753 503 WKLAIER---HNGPTALIL 518 (663)
T ss_pred HHHHHhc---CCCCEEEEe
Confidence 7766641 478988854
No 238
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=76.53 E-value=17 Score=39.23 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHH-HHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAY-NIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP 105 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL-~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~ 105 (355)
++|.|+|++ .-+++++++.+ +.+ ..++.+ +.++..++||++++..-++. ...........|++-+. .+|
T Consensus 375 g~AaGlA~~-----G~~P~v~~f~~--Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~-g~dG~THq~~~dia~lr-~iP 444 (641)
T PRK12571 375 TFAAGLAAA-----GLKPFCAVYST--FLQ-RGYDQLLHDVALQNLPVRFVLDRAGLV-GADGATHAGAFDLAFLT-NLP 444 (641)
T ss_pred HHHHHHHHC-----CCEEEEEehHH--HHH-HHHHHHHHHHhhcCCCeEEEEECCCcC-CCCCccccccHHHHHHh-cCC
Confidence 345555542 34666666554 443 344444 66889999999998555542 11111122223443322 344
Q ss_pred eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
.+.| .=.|+.++..+++.|++. .++|++|-..
T Consensus 445 nl~V~~Psd~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 445 NMTVMAPRDEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred CCEEEeeCCHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 4433 224677777777776631 4789999543
No 239
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=75.42 E-value=7.4 Score=39.57 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|-|.+.+. +.-..+++..|=|.++. .-++..|-.-+.|||+|.-+-..........+ ..|..+.... -.
T Consensus 53 mAdgyar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk~ 124 (432)
T TIGR00173 53 FALGLAKAS---GRPVAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPELRGCGANQ--TIDQPGLFGSYVRW 124 (432)
T ss_pred HHHHHHhcc---CCCEEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHHhCCCCCc--ccchhhHHhhccce
Confidence 344555431 22333444446666543 23566777789999999865431110000001 1122221111 12
Q ss_pred eEEEeCCC----HHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 106 GIWVDGMD----VLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D----~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+|...+ ...+.+.+++|++.+..+ +||+.|++..+
T Consensus 125 ~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 125 SLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred eeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 33443211 223677888888888774 48999999754
No 240
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=75.18 E-value=16 Score=35.76 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHH-HHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAY-NIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI 104 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL-~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~ 104 (355)
++.|.|.|++ ...+.++.+ +.+..+-.||=+ |..+..+|||.+|+.+-++............+|++-. .++
T Consensus 62 vg~AAGLA~~-----Gk~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaim-R~l 133 (312)
T COG3958 62 VGTAAGLALA-----GKKPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIM-RGL 133 (312)
T ss_pred HHHHHHHHhc-----CCCceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHH-hcC
Confidence 4556676665 345555544 456665666644 5556789999999999885443222222223444321 255
Q ss_pred ceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 105 PGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 105 ~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
|-..| .-.|..+. +++++++.+.+||+-+-+
T Consensus 134 pn~~V~~P~D~v~~----~~i~~~~~~~~GP~Y~Rl 165 (312)
T COG3958 134 PNMTVIAPADAVET----RAILDQIADYKGPVYMRL 165 (312)
T ss_pred CCceEEccCcHHHH----HHHHHHHHhcCCCEEEEe
Confidence 54433 22355444 445555666789998743
No 241
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=75.06 E-value=24 Score=36.71 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEe-CcccccccHHHHHHHHHH--------HcCCCEEEEEEeCCCcceeeccccCCCcc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALY-GDGASNQGQNFEAYNIAK--------LWGIPCIYVCENNGYGMGTSAERSSASTD 96 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~-GDGa~~~G~~~EaL~~Aa--------~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d 96 (355)
+++|.|+|++ .-++++.++ .+-. +-.+....|.++ .+++||+|+..|-.... ...+.+..+
T Consensus 202 vg~AaGlA~~-----G~rPiv~~~~~~f~--~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~---~G~hhs~~d 271 (464)
T PRK11892 202 AGIGVGAAFA-----GLKPIVEFMTFNFA--MQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR---VAAQHSQDY 271 (464)
T ss_pred HHHHHHHHhC-----CCEEEEEEehHHHH--HHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC---CCCccccCH
Confidence 3445666653 346666554 3322 222333456677 88999999987655432 111223233
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 97 YYTRGDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 97 ~~~~A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
.+-. ..+|+++| .=.|+.+....++.|+ +.++|+++-
T Consensus 272 ~a~~-~~iPgl~V~~P~d~~d~~~ll~~ai----~~~~Pv~il 309 (464)
T PRK11892 272 AAWY-SHIPGLKVVAPYSAADAKGLLKAAI----RDPNPVIFL 309 (464)
T ss_pred HHHH-hhCCCCEEEEeCCHHHHHHHHHHHh----hCCCcEEEE
Confidence 3222 24555433 2236667666666655 457899873
No 242
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=74.59 E-value=27 Score=30.98 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 70 GIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 70 ~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
++||+++...=+++...+ .....+++-. ..+|+.+| .=.|+.+...+++.+++ .++|+++-
T Consensus 103 ~~pv~i~~~~gg~~~~G~---ths~~~~a~l-r~iPg~~V~~Psd~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 103 KVPIVIRGPNGGGIGGGA---QHSQSLEAWF-AHIPGLKVVAPSTPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred cCCEEEEEeCCCCCCcCh---hhhhhHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 599999985433332111 1222333221 24455433 22467777777666653 56899873
No 243
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=74.49 E-value=20 Score=38.78 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceE
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGI 107 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~ 107 (355)
.|.|+|+. .-+++++++.| +.+-.+-+-.+.++..++||+|++...++. ...........|+.-. ..+|++
T Consensus 414 ~AaGLA~~-----G~rPvv~~fs~--Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~-g~dG~TH~~~~Dia~l-r~iPnl 484 (641)
T PLN02234 414 FAAGLACE-----GLKPFCTIYSS--FMQRAYDQVVHDVDLQKLPVRFAIDRAGLM-GADGPTHCGAFDVTFM-ACLPNM 484 (641)
T ss_pred HHHHHHHC-----CCeEEEEehHH--HHHHHHHHHHHHHhhcCCCEEEEEeCCccC-CCCCccccccHHHHHH-hcCCCC
Confidence 35555542 34666666543 433233334466788999999998766642 1111111222333322 134444
Q ss_pred EE-eCCCHHHHHHHHHHHHHHHHcCCCCeEE
Q psy14560 108 WV-DGMDVLAVREASKFAVNYASSGKGPLVL 137 (355)
Q Consensus 108 ~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lI 137 (355)
.| .=.|+.++..+++.|+. ..++|++|
T Consensus 485 ~V~~Psd~~E~~~~l~~a~~---~~~~Pv~i 512 (641)
T PLN02234 485 IVMAPSDEAELFNMVATAAA---IDDRPSCF 512 (641)
T ss_pred EEEeeCCHHHHHHHHHHHHh---CCCCCEEE
Confidence 33 12467777777766553 24589988
No 244
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=74.14 E-value=10 Score=33.30 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=61.7
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeecc--ccCCCccHhh
Q psy14560 24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAE--RSSASTDYYT 99 (355)
Q Consensus 24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~--~~~~~~d~~~ 99 (355)
-+++++.|+.+| .+++.+.+ -..+. +.=...++|. ..+++|+++++..-++ .-..+.+ .....+++-+
T Consensus 53 eg~GIcAGa~lA-----Gkk~ailm-QnsGlGNsiNal~SL~--~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe 124 (172)
T COG4032 53 EGVGICAGAYLA-----GKKPAILM-QNSGLGNSINALASLY--VTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILE 124 (172)
T ss_pred cceeeehhhhhc-----CCCcEEEE-eccCcchHHHHHHHHH--HHhccchhhhhhccchhhcCCccccccchhhHHHHh
Confidence 455668888888 23334433 33332 2212223332 4689999999877663 2111111 1111122221
Q ss_pred hcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 100 RGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 100 ~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
..++|.+++.+ +++-++.+..+...+.+...|+.+-+.
T Consensus 125 -~~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 125 -GLELPTYTIIG--PEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred -hcCCcccccCC--HHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 35788898876 677788889999999888889876553
No 245
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=73.32 E-value=62 Score=31.12 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=55.7
Q ss_pred eEEEEeCccc--ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc--ccC--CCc-cHhhh--cCCcceEEEeCCC
Q psy14560 44 VCFALYGDGA--SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE--RSS--AST-DYYTR--GDYIPGIWVDGMD 113 (355)
Q Consensus 44 ~vv~~~GDGa--~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~--~~~--~~~-d~~~~--A~G~~~~~VdG~D 113 (355)
.++.++.||. .+++..-+.+.-|...++-++||+.+|. -+.|...- ... ... .+... .+++|+..|- .|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 7888776767888888999999988775 22222110 001 011 12221 4688887664 48
Q ss_pred HHHHHHHHHHHHHH
Q psy14560 114 VLAVREASKFAVNY 127 (355)
Q Consensus 114 ~~~v~~a~~~Al~~ 127 (355)
+.++.+++..+++.
T Consensus 245 ~~~lp~~l~~~lrq 258 (266)
T cd01460 245 LNQLPSVLSDALRQ 258 (266)
T ss_pred hhHhHHHHHHHHHH
Confidence 99999999888864
No 246
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=73.08 E-value=24 Score=38.57 Aligned_cols=92 Identities=10% Similarity=-0.039 Sum_probs=50.4
Q ss_pred CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceEEE-eCCCHHHHHH
Q psy14560 41 TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWV-DGMDVLAVRE 119 (355)
Q Consensus 41 ~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~~V-dG~D~~~v~~ 119 (355)
.-++++++.. .+.+=.+-.-.+-++..++||+|++..-++.. ..........|++-+. .+|.++| .=.|+.++..
T Consensus 446 G~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlvg-~DG~TH~g~~Dia~lr-~IPnm~V~aPsD~~El~~ 521 (701)
T PLN02225 446 GLKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLVG-SDGPVQCGAFDIAFMS-SLPNMIAMAPADEDELVN 521 (701)
T ss_pred CCEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccCC-CCCccccccHHHHHHh-cCCCCEEEeeCCHHHHHH
Confidence 4577888774 45442333345557889999999986533221 0111122223443321 3444433 1246777777
Q ss_pred HHHHHHHHHHcCCCCeEEEE
Q psy14560 120 ASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 120 a~~~Al~~ar~~~gP~lIev 139 (355)
+++.|+. ..++|+.|-.
T Consensus 522 mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 522 MVATAAY---VTDRPVCFRF 538 (701)
T ss_pred HHHHHHh---cCCCCEEEEe
Confidence 7766553 3468999854
No 247
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=72.36 E-value=13 Score=39.97 Aligned_cols=77 Identities=25% Similarity=0.354 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhh-hcC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeE
Q psy14560 59 NFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYT-RGD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLV 136 (355)
Q Consensus 59 ~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~-~A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~l 136 (355)
..-++.+|+..++|+++|..-+.++.+.......+.+.++. ||. ++.++|= .|..+...+.+.|+++ .++|++
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~---~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRP--ADANETAAAWKYALER---KDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEec--CChHHHHHHHHHHHhc---CCCCeE
Confidence 34468999999999999999999888655444445455555 353 6666653 2455666666666653 588999
Q ss_pred EEEE
Q psy14560 137 LEVV 140 (355)
Q Consensus 137 Iev~ 140 (355)
|-+.
T Consensus 516 Lilt 519 (663)
T COG0021 516 LILT 519 (663)
T ss_pred EEEe
Confidence 8764
No 248
>PRK12754 transketolase; Reviewed
Probab=71.32 E-value=25 Score=38.20 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=55.6
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh-cC-CcceEEEeCCCHHHHHHH
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR-GD-YIPGIWVDGMDVLAVREA 120 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~-A~-G~~~~~VdG~D~~~v~~a 120 (355)
.+.++.+. .+.. ...+.+.+++..++||++|....+++.+.......+..|++-. +. |+.+++- .|..++..+
T Consensus 428 ~Pf~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~P--aD~~E~~~~ 502 (663)
T PRK12754 428 LPYTSTFL--MFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRP--CDQVESAVA 502 (663)
T ss_pred eEEEEeeH--HHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecC--CCHHHHHHH
Confidence 44444442 3444 6778899999999999999998887765433333344455442 32 4444432 467777777
Q ss_pred HHHHHHHHHcCCCCeEEEE
Q psy14560 121 SKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 121 ~~~Al~~ar~~~gP~lIev 139 (355)
++.|++. .++|+.|-+
T Consensus 503 ~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 503 WKYGVER---QDGPTALIL 518 (663)
T ss_pred HHHHHhC---CCCCEEEEe
Confidence 7766642 368997744
No 249
>PRK05899 transketolase; Reviewed
Probab=70.82 E-value=30 Score=37.14 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
++|.|+|+. +.-+++++.+ ..+. .-.++.+.+++..++|++++....+++.+.......+..|++-+. .+|.
T Consensus 381 g~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r-~iP~ 452 (624)
T PRK05899 381 AIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLR-AIPN 452 (624)
T ss_pred HHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHHHHH-hCCC
Confidence 345555543 3245555533 2333 456677888888999999999877764432111222223333321 3444
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
++| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 453 ~~V~~P~d~~e~~~~l~~a~~---~~~~P~~ir~ 483 (624)
T PRK05899 453 LTVIRPADANETAAAWKYALE---RKDGPSALVL 483 (624)
T ss_pred cEEEeCCCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 433 22467777777776663 2278998865
No 250
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=69.63 E-value=45 Score=33.31 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEe-CcccccccHHHHHHHHHHHcC--------CCEEEEEEeCCCcceeeccccCCCcc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALY-GDGASNQGQNFEAYNIAKLWG--------IPCIYVCENNGYGMGTSAERSSASTD 96 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~-GDGa~~~G~~~EaL~~Aa~~~--------LPvi~Vv~NN~~~~~~~~~~~~~~~d 96 (355)
++.|.|+|++ ..++++++. .|=. +=.+....+-++.++ +||+++..+ +..... ...+...+
T Consensus 87 vg~AaGlA~~-----G~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~--G~tH~~~~ 156 (356)
T PLN02683 87 TGIGVGAAYA-----GLKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGV--GAQHSQCF 156 (356)
T ss_pred HHHHHHHHHC-----CCEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCC--CCccccCH
Confidence 3445555553 345565553 3322 111222346666666 999999776 532221 11111122
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 97 YYTRGDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 97 ~~~~A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
.+-. ..+|+++| .=.|+.++..+++.|+ ..++|++|-
T Consensus 157 ~a~l-r~iPnl~V~~Pad~~e~~~~l~~a~----~~~gPv~ir 194 (356)
T PLN02683 157 AAWY-SSVPGLKVLAPYSSEDARGLLKAAI----RDPDPVVFL 194 (356)
T ss_pred HHHH-hcCCCCEEEEeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 2211 23444433 1246777777766655 357899984
No 251
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=67.60 E-value=18 Score=43.43 Aligned_cols=104 Identities=15% Similarity=0.051 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-+.|+|+|.-+-..........+. .|....... -.
T Consensus 354 mAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~--iDq~~lf~pvtK~ 425 (1655)
T PLN02980 354 HALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQA--INQVNHFGSFVRF 425 (1655)
T ss_pred HHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcc--cchhhHHHhhhhe
Confidence 456666552 2223344445666654 3456778888999999998775422111111111 122221111 11
Q ss_pred eEEEeCCCHHH------HHHHHHHHHHHHHcC-CCCeEEEEEe
Q psy14560 106 GIWVDGMDVLA------VREASKFAVNYASSG-KGPLVLEVVT 141 (355)
Q Consensus 106 ~~~VdG~D~~~------v~~a~~~Al~~ar~~-~gP~lIev~t 141 (355)
..+|. ++++ +.+++++|+..++.+ .||+.|++..
T Consensus 426 s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 426 FFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred eecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 23332 3333 457788888888876 4999999973
No 252
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=65.73 E-value=7.8 Score=36.46 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=48.1
Q ss_pred HHHHHhhHHHhhcc-ccccccccccccceeecCCCHHHHHHHHhcccccCCCCCCCCCcccccCCCCccccCCc--cccc
Q psy14560 179 KEACAVGMRAVMRE-QDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYA--KNFY 255 (355)
Q Consensus 179 qEa~qvg~~~al~~-~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~ 255 (355)
++..+......++. .|+++|.||.+. . .+..++.++ +... | .++|... .++.
T Consensus 4 Hg~~~l~a~l~l~G~~~~~~p~~~~~~----~--gl~~lf~qf-s~~g----------------g--~psH~~~~tpGi~ 58 (227)
T cd02011 4 HGGPAVLANLYLEGSYSEFYPEISQDE----E--GMRKLFKQF-SFPG----------------G--IPSHAAPETPGSI 58 (227)
T ss_pred hHHHHHHHHHHhcCCCccccccccccH----H--HHHHHHHhc-CCCC----------------C--CCCCCcccCCCee
Confidence 45555666677777 499999998765 2 235566664 2111 3 5678765 6999
Q ss_pred ccccccCCchhhhhhh
Q psy14560 256 GGNGIVGAQTLKSLLK 271 (355)
Q Consensus 256 ~~~~~vg~~~~~a~~~ 271 (355)
..++++|.++++|+.-
T Consensus 59 ~~~G~LG~gLs~A~G~ 74 (227)
T cd02011 59 HEGGELGYSLSHAYGA 74 (227)
T ss_pred ecccchhhHHHHHHHh
Confidence 9999999999999865
No 253
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=56.35 E-value=97 Score=32.42 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcce-e--eccccCCC---ccHhhh
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMG-T--SAERSSAS---TDYYTR 100 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~-~--~~~~~~~~---~d~~~~ 100 (355)
-+|-|.+.+. + ...+++..|=|+++. .-++..|-.-+.|||+|.-.-..... . ........ .++.+.
T Consensus 53 ~mAdgyar~t---g-~gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 125 (539)
T TIGR03393 53 YAADGYARCK---G-AAALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRM 125 (539)
T ss_pred HHhhhhhhhc---C-ceEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHH
Confidence 3455555542 3 244455668887653 23467788899999999864332100 0 00000000 112222
Q ss_pred cCCcc--eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 101 GDYIP--GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 101 A~G~~--~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
...+. ...++ +.++.+.+.+|++.+...++|+.|++..+
T Consensus 126 ~~~itk~~~~~~---~~~~~~~i~~a~~~A~~~~gPv~l~iP~D 166 (539)
T TIGR03393 126 AAEVTVAQAVLT---EQNATAEIDRVITTALRERRPGYLMLPVD 166 (539)
T ss_pred hhceEEEEEEeC---hhhhHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 21111 12232 33444555566666656678999999865
No 254
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=55.23 E-value=26 Score=28.67 Aligned_cols=41 Identities=27% Similarity=0.654 Sum_probs=33.3
Q ss_pred eecccCCC-CCCcceecHHH----HHHHHHHHHHHHHHHHHHhhhh
Q psy14560 290 KLHKLSEG-PSNKVTVTKQD----ALLYYRQMQTIRRLETSAGNLY 330 (355)
Q Consensus 290 ~~~~~~~~-~~~~~~~~~~~----~~~~~~~m~~~r~~~~~~~~~~ 330 (355)
||+....| |+-++.++.|+ ++.|||+=+.+.++|+.=+.-|
T Consensus 32 Kl~~~g~g~P~REp~isee~qk~mm~~~~rrqEElKkLee~ddd~y 77 (98)
T PF11069_consen 32 KLQKRGQGPPPREPVISEEEQKAMMAYYYRRQEELKKLEEDDDDSY 77 (98)
T ss_pred EeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 56778888 68888888766 7788999999999998876655
No 255
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=50.85 E-value=1.5e+02 Score=25.71 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcC-CCEEEEEEe-CCCcceeeccccCCCccHhhhcCCcc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWG-IPCIYVCEN-NGYGMGTSAERSSASTDYYTRGDYIP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~-LPvi~Vv~N-N~~~~~~~~~~~~~~~d~~~~A~G~~ 105 (355)
+|.|+|+. +. ++++++...-.. ...+.+.+...++ +|+|+.... ..++...+ ...+..++.-. ..+|
T Consensus 64 ~a~GlA~~----G~-~pi~~~~~~f~~---~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~--tH~~~~~~~~~-~~iP 132 (168)
T smart00861 64 FAAGLALA----GL-RPVVAIFFTFFD---RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGP--THHSQEDEALL-RAIP 132 (168)
T ss_pred HHHHHHHc----CC-CcEEEeeHHHHH---HHHHHHHHhCcccCCCEEEEecCccccCCCCc--cccchhHHHHH-hcCC
Confidence 44455443 43 666666644322 2456677777776 555444432 33333211 11222333322 2455
Q ss_pred eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
...| .=.|+.++...++.+++ ..++|++|-+
T Consensus 133 ~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 133 GLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred CcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 4432 34578888888887773 3467977743
No 256
>KOG4166|consensus
Probab=50.35 E-value=56 Score=33.84 Aligned_cols=105 Identities=23% Similarity=0.245 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhcCCcce
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
+|-|.|.+. ++..+|++..|-|+.+- ..-|.-|-.-++|++.+--.=- -+|.+. .+...|+......+.-
T Consensus 144 aAegYaR~s---gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvftGQVptsaIGtD---AFQEadiVgisRScTK 214 (675)
T KOG4166|consen 144 AAEGYARSS---GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFTGQVPTSAIGTD---AFQEADIVGISRSCTK 214 (675)
T ss_pred hhhhhhhhc---CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEecccchhhcccc---hhccCCeeeeeeccce
Confidence 345655553 45677888899999653 1124445557888765522100 122211 1111233222211111
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEe
Q psy14560 107 IWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVT 141 (355)
Q Consensus 107 ~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t 141 (355)
..|--.|++++.+-++||.+.|-++ .||+|+++.-
T Consensus 215 wNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlPK 250 (675)
T KOG4166|consen 215 WNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPK 250 (675)
T ss_pred eheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCcH
Confidence 1222247899999999999988764 6899999853
No 257
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=48.99 E-value=1.2e+02 Score=35.26 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhh-hcCC
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYT-RGDY 103 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~-~A~G 103 (355)
.+.+++|++.+ +.++..++--.++.. ..|.|-.++-..+|+|+++.+=.+.-. .........|+.. +.-|
T Consensus 63 A~~av~GA~~a------Gara~T~TSs~GL~L--M~e~l~~~ag~~~P~Vi~va~R~~~~~-~~~i~~dh~Dv~~~R~~G 133 (1165)
T TIGR02176 63 AAGAVHGALQT------GALTTTFTASQGLLL--MIPNMYKIAGELLPCVFHVSARAIAAH-ALSIFGDHQDVMAARQTG 133 (1165)
T ss_pred HHHHHHhHhhc------CCCEEEecChhHHHH--HHHHHHHHHhccCCEEEEEecCCCCCC-CCccCCCchHHHHhhcCC
Confidence 35567776654 344444443222222 356676666668998888886443221 1111111123322 3346
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
+..+ -..++.++++..-.|...|.+.+.|+++-..-.+ .+|.
T Consensus 134 ~ivl--~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~-tsh~ 175 (1165)
T TIGR02176 134 FAML--ASSSVQEVMDLALVAHLATIEARVPFMHFFDGFR-TSHE 175 (1165)
T ss_pred eEEE--eCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCce-eccc
Confidence 6333 3457888888777787777778889888666543 2554
No 258
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=46.25 E-value=1e+02 Score=30.82 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=19.4
Q ss_pred CcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 103 YIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 103 G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
.+|.++| .=.|+.++..+++.|++ .++|++|-
T Consensus 170 ~iPn~~V~~Psd~~e~~~~l~~a~~----~~~P~~i~ 202 (355)
T PTZ00182 170 HVPGLKVVAPSDPEDAKGLLKAAIR----DPNPVVFF 202 (355)
T ss_pred cCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 4444433 12367777777776654 47899774
No 259
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=40.54 E-value=95 Score=25.04 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEe
Q psy14560 41 TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCEN 79 (355)
Q Consensus 41 ~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~N 79 (355)
++..++++.-.|...+ ..+.+..|...+.|+|.|..+
T Consensus 53 ~~d~vi~is~sg~~~~--~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 53 PDDLVIIISYSGETRE--LIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp TTEEEEEEESSSTTHH--HHHHHHHHHHTTSEEEEEESS
T ss_pred ccceeEeeeccccchh--hhhhhHHHHhcCCeEEEEeCC
Confidence 4666777776666544 567788888888888666554
No 260
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.08 E-value=61 Score=28.99 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=33.6
Q ss_pred cHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 96 DYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 96 d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
-+.++|+|+.++.+++.+.+.+.+.++..+++ -+||..++..+
T Consensus 24 ~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 24 ALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 45567899999999998667777777776654 78998887654
No 261
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=39.96 E-value=86 Score=32.95 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEe
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCEN 79 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~N 79 (355)
+|.|.+.+. +.-..+++..|=|.++. .-++..|-..++|||+|.-.
T Consensus 62 aAdgyar~t---g~~~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 62 LALGLAKAS---KRPVAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHhh---CCCEEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 455555542 22233455557777653 24577788899999999764
No 262
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=34.27 E-value=98 Score=30.11 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=41.4
Q ss_pred CcccccchHHHHHHHHHHHhc---CCCCeEEEEeCccc--ccccHHHHHHHHH---------HHcCCCEEEEEEeCCCc
Q psy14560 19 NGIVGAQVPLGTGIAFAAQYK---GTGGVCFALYGDGA--SNQGQNFEAYNIA---------KLWGIPCIYVCENNGYG 83 (355)
Q Consensus 19 ~g~lG~~lp~AiGaA~A~k~~---~~~~~vv~~~GDGa--~~~G~~~EaL~~A---------a~~~LPvi~Vv~NN~~~ 83 (355)
+.-||++++.++|..+..... ..+-+.|+|.--|+ |++|.+- -|.+| ...+||.|.|+.|=-.|
T Consensus 131 f~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lS-LMQMaktsaAl~~l~ea~lpyIsVLt~PTtG 208 (294)
T COG0777 131 FAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILS-LMQMAKTSAALKRLSEAGLPYISVLTDPTTG 208 (294)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHH-HHHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 456777788888888765432 24567888887777 5665432 23333 23589999998875543
No 263
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.26 E-value=2e+02 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=9.9
Q ss_pred HHHHHHHHHHcCCCEEEEEEe
Q psy14560 59 NFEAYNIAKLWGIPCIYVCEN 79 (355)
Q Consensus 59 ~~EaL~~Aa~~~LPvi~Vv~N 79 (355)
+.+++..|...+.|+|.+..|
T Consensus 63 ~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 63 LLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 334444444455554444443
No 264
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=31.79 E-value=3.1e+02 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=21.2
Q ss_pred CcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 103 YIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 103 G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
.+|+++| .=.|+.++..+++.|++ .++|++|-..
T Consensus 139 ~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~ 173 (327)
T PRK09212 139 HIPGLKVVAPYFAADCKGLLKTAIR----DPNPVIFLEN 173 (327)
T ss_pred cCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEEEc
Confidence 4555544 22467777777776653 4789998443
No 265
>KOG1184|consensus
Probab=31.66 E-value=1e+02 Score=32.64 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEe-CC--CcceeeccccCCCccHhh---hcCCcc--eEEEeCCC
Q psy14560 42 GGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCEN-NG--YGMGTSAERSSASTDYYT---RGDYIP--GIWVDGMD 113 (355)
Q Consensus 42 ~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~N-N~--~~~~~~~~~~~~~~d~~~---~A~G~~--~~~VdG~D 113 (355)
=...|..+|=|+++- .-++.=|=..++|||+||-- |. .+-..-......+.||.- .+..+. ..-++ |
T Consensus 67 i~a~VtTfgVGeLSA---lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~ 141 (561)
T KOG1184|consen 67 IGACVTTFGVGELSA---LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--D 141 (561)
T ss_pred ceEEEEEeccchhhh---hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc--C
Confidence 345777888888532 00122233579999999851 21 211111112234456543 233222 22332 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 114 VLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 114 ~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.++..+-+++|++.+....+|+-|.+.+.
T Consensus 142 ~e~A~~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 142 IEDAPEQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEeecc
Confidence 55556667777777777889999999875
No 266
>KOG0369|consensus
Probab=30.96 E-value=1.1e+02 Score=33.58 Aligned_cols=59 Identities=32% Similarity=0.339 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHc--CCCCeE
Q psy14560 59 NFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASS--GKGPLV 136 (355)
Q Consensus 59 ~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~--~~gP~l 136 (355)
..|++.++..|++|||+=-. || -|-.+.+|-. ..++|.++++.|-..|++ ++|.++
T Consensus 173 ~~EA~eF~k~yG~PvI~KAA---yG------------------GGGRGmRvVr-~~e~vee~f~Ra~SEA~aaFGnG~~F 230 (1176)
T KOG0369|consen 173 VEEALEFVKEYGLPVIIKAA---YG------------------GGGRGMRVVR-SGEDVEEAFQRAYSEALAAFGNGTLF 230 (1176)
T ss_pred HHHHHHHHHhcCCcEEEeec---cc------------------CCCcceEEee-chhhHHHHHHHHHHHHHHhcCCceee
Confidence 66888888888888875311 11 1334444421 345666666666655544 556666
Q ss_pred EEE
Q psy14560 137 LEV 139 (355)
Q Consensus 137 Iev 139 (355)
||-
T Consensus 231 vEk 233 (1176)
T KOG0369|consen 231 VEK 233 (1176)
T ss_pred HHh
Confidence 553
No 267
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=30.66 E-value=3.8e+02 Score=26.35 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=20.0
Q ss_pred CcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 103 YIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 103 G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
.+|+.+| .=.|+.+...+++.|+ +.++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~----~~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAI----RSNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 4555543 1246777777776665 357899884
No 268
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=30.38 E-value=38 Score=26.49 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy14560 306 KQDALLYYRQMQTIRRLETSAGNLYKEKV 334 (355)
Q Consensus 306 ~~~~~~~~~~m~~~r~~~~~~~~~~~~~~ 334 (355)
|.++-+=-+ .++++||.|++|+|+-.+
T Consensus 52 R~~L~~~l~--~lv~~mE~K~dQI~~L~d 78 (79)
T PF06657_consen 52 RRDLEQELE--ELVKRMEAKADQIYKLYD 78 (79)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 444443322 468999999999998654
No 269
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=27.85 E-value=3.6e+02 Score=29.20 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=56.0
Q ss_pred ccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhc
Q psy14560 23 GAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRG 101 (355)
Q Consensus 23 G~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A 101 (355)
.-+-.+..++++|. ..-++||++.- .+-|=..-.-+.=.+..+|||+|+|.-.+ .|...++.. -..+.+
T Consensus 366 AEQHAVT~AAGlA~---~G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~-----G~fDls 435 (627)
T COG1154 366 AEQHAVTFAAGLAA---EGMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQ-----GLFDLS 435 (627)
T ss_pred hHHHHHHHHHHHHh---CCCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccc-----cHHHHH
Confidence 33444444555554 24566777761 12221222223345678999999999766 343322221 122333
Q ss_pred C--CcceEEEe-CCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 102 D--YIPGIWVD-GMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 102 ~--G~~~~~Vd-G~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
+ -+|.+.+- -.|..++...+..|+.+ .++|+.|-.
T Consensus 436 ~l~~iPnmvi~aP~de~el~~ml~ta~~~---~~gP~AiRy 473 (627)
T COG1154 436 FLRCIPNMVIMAPRDEEELRQMLYTALAQ---DDGPVAIRY 473 (627)
T ss_pred HHhcCCCcEEecCCCHHHHHHHHHHHHhc---CCCCeEEEe
Confidence 2 46665542 24677777777766653 458998844
No 270
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=27.48 E-value=95 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=30.5
Q ss_pred cccceecccCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14560 286 TKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKE 332 (355)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~r~~~~~~~~~~~~ 332 (355)
+|.|++..+++ +|.-.+.-++-+.+|.||...-.-|++
T Consensus 57 iPgYrIR~~te---------~e~~~kvsKev~~lr~~E~~Ll~~Y~~ 94 (95)
T PF07540_consen 57 IPGYRIRPLTE---------KEKKEKVSKEVRKLRDFEQSLLKNYQK 94 (95)
T ss_pred CCCcccCCCCh---------HHhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 79999987744 344557888899999999999888874
No 271
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=26.76 E-value=2e+02 Score=26.53 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=45.8
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHH-cCCC--EEEEEEeCC--CcceeeccccCCCccHhhhc--CCcceEEEeCCCHH
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKL-WGIP--CIYVCENNG--YGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVL 115 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~-~~LP--vi~Vv~NN~--~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~ 115 (355)
+.+|...|-|+..+ ++--|.. -.+| +..|+.||. |++ ++| .|+|...++-.+.
T Consensus 2 ki~VlaSG~GSNlq-----aiida~~~~~~~a~i~~Visd~~~A~~l--------------erA~~~gIpt~~~~~k~~- 61 (200)
T COG0299 2 KIAVLASGNGSNLQ-----AIIDAIKGGKLDAEIVAVISDKADAYAL--------------ERAAKAGIPTVVLDRKEF- 61 (200)
T ss_pred eEEEEEeCCcccHH-----HHHHHHhcCCCCcEEEEEEeCCCCCHHH--------------HHHHHcCCCEEEeccccC-
Confidence 46777888877544 3444443 2334 888888874 333 233 4888877764433
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 116 AVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 116 ~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
.-.++++.++....+..+|=+|-+.-
T Consensus 62 ~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 62 PSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 12345555555555567787776543
No 272
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.32 E-value=1.3e+02 Score=26.70 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=28.4
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEe
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCEN 79 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~N 79 (355)
+..+.++|-|+...+...+...++...++|++.-...
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 4466788999876666777788899999998866543
No 273
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=25.78 E-value=1.3e+02 Score=24.30 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=26.6
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY 82 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~ 82 (355)
..+|+.+.+--...|..+| +-.|...+.||+.+..+.+.
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 3455555443356677777 78888899999999887664
No 274
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.78 E-value=1.7e+02 Score=23.88 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=22.6
Q ss_pred CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeC
Q psy14560 41 TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80 (355)
Q Consensus 41 ~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN 80 (355)
++..++++.--|...+ ..+++..|...+.|++.|..|.
T Consensus 47 ~~dl~I~iS~SG~t~~--~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 47 EKSVVILASHSGNTKE--TVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CCcEEEEEeCCCCChH--HHHHHHHHHHcCCeEEEEECCC
Confidence 3455555555555443 5566777777777766665543
No 275
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.29 E-value=2.9e+02 Score=25.15 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=16.4
Q ss_pred ccchHHHHHHHHHHHhc------CCCCeEEEEeCccc
Q psy14560 23 GAQVPLGTGIAFAAQYK------GTGGVCFALYGDGA 53 (355)
Q Consensus 23 G~~lp~AiGaA~A~k~~------~~~~~vv~~~GDGa 53 (355)
|.|-+.++..-++.++. +++-+++++.-|..
T Consensus 48 G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~ 84 (196)
T PRK10886 48 GNGTSAANAQHFAASMINRFETERPSLPAIALNTDNV 84 (196)
T ss_pred ECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHH
Confidence 34444555555555442 45556666655555
No 276
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=23.17 E-value=1.5e+02 Score=29.88 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=55.7
Q ss_pred CCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHH
Q psy14560 40 GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAV 117 (355)
Q Consensus 40 ~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v 117 (355)
+++.+-+|+---|-... .....|-.|+.-.+|++.|--.---+ ......+...|+.+.|.-+ ...+| ..+.-|
T Consensus 65 ~~gnigvcigtsgpagt-dmitglysa~adsipilcitgqapra--rl~kedfqavdi~~ia~pv~kwavtv--~epalv 139 (592)
T COG3960 65 TAGNIGVCIGTSGPAGT-DMITGLYSASADSIPILCITGQAPRA--RLHKEDFQAVDIEAIAKPVSKWAVTV--REPALV 139 (592)
T ss_pred cCCceEEEecCCCCCcc-chhhhhhhcccccccEEEecCCCchh--hhchhhhhhhhHHHhhhhhhhhhhhh--cchhhh
Confidence 35667777644443332 23445777777788887663211000 0011222234555554311 12233 467788
Q ss_pred HHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 118 REASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 118 ~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
..+++.|..-+|++ .||+||++..+
T Consensus 140 p~v~qkafhlmrs~rpgpvlidlp~d 165 (592)
T COG3960 140 PRVLQQAFHLMRSGRPGPVLIDLPFD 165 (592)
T ss_pred HHHHHHHHHHHhcCCCCCeEEecccc
Confidence 89999999988874 68999998654
No 277
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.17 E-value=3.3e+02 Score=23.40 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=26.3
Q ss_pred cCCCccHhhh---c--CCcceE--EEeC--CCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 91 SSASTDYYTR---G--DYIPGI--WVDG--MDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 91 ~~~~~d~~~~---A--~G~~~~--~VdG--~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
....|++... + .|+.+. .|.+ ....+| +++++|++. ..||+|-.|++
T Consensus 41 e~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV-~~f~~Al~e---aegPVlayCrs 96 (130)
T COG3453 41 EPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADV-EAFQRALDE---AEGPVLAYCRS 96 (130)
T ss_pred CCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHH-HHHHHHHHH---hCCCEEeeecC
Confidence 3344666553 2 366554 3333 333333 455666654 57999999965
No 278
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.17 E-value=2e+02 Score=23.22 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=15.0
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEE
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCE 78 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~ 78 (355)
..++++.-.|...+ ..+++..|...+.|+|.|..
T Consensus 48 d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 48 TLVIAISQSGETAD--TLAALRLAKEKGAKTVAITN 81 (126)
T ss_pred cEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEEC
Confidence 33444443333332 33445555555555554444
No 279
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=22.02 E-value=65 Score=24.38 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCCeEEEEE
Q psy14560 121 SKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 121 ~~~Al~~ar~~~gP~lIev~ 140 (355)
+++|++.|++.++|++|++.
T Consensus 6 ~~~al~~A~~~~kpvlv~f~ 25 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFG 25 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEE
Confidence 35677777788999999983
No 280
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.82 E-value=2.3e+02 Score=20.49 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=26.5
Q ss_pred eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEE
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCE 78 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~ 78 (355)
-.|+++|+.....|.....+...+..++|+..+..
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~ 36 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQ 36 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 47899999545566666777777889999988764
No 281
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.02 E-value=2.7e+02 Score=25.02 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=16.8
Q ss_pred CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEe
Q psy14560 41 TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCEN 79 (355)
Q Consensus 41 ~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~N 79 (355)
++..++++...|.... ..+++..|...+.|+|.+..|
T Consensus 111 ~~Dv~I~iS~SG~t~~--~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 111 EGDVLLGISTSGNSGN--IIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCC
Confidence 4444444444444332 334445555555555544443
No 282
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=20.82 E-value=69 Score=26.73 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=26.0
Q ss_pred CeEEEEeCcccccccHHHHHHHHHHHcCCCEEE
Q psy14560 43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIY 75 (355)
Q Consensus 43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~ 75 (355)
+.++.++|.|+...+..-|...+|.+.++|++.
T Consensus 12 ~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 12 KRPVILAGRGARRSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE
T ss_pred CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEe
Confidence 446779999997667777888999999999853
No 283
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.75 E-value=1.9e+02 Score=23.45 Aligned_cols=8 Identities=0% Similarity=-0.301 Sum_probs=3.7
Q ss_pred CcceEEEe
Q psy14560 103 YIPGIWVD 110 (355)
Q Consensus 103 G~~~~~Vd 110 (355)
|++.+.+.
T Consensus 70 g~~iI~IT 77 (119)
T cd05017 70 GAKIVAIT 77 (119)
T ss_pred CCEEEEEe
Confidence 44544443
No 284
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=20.69 E-value=3.8e+02 Score=24.66 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=29.5
Q ss_pred eEEEEeCcccccccHHHHHHHHHH-HcCCC--EEEEEEeCCCcceeeccccCCCccHhhhc--CCcceEEEeC
Q psy14560 44 VCFALYGDGASNQGQNFEAYNIAK-LWGIP--CIYVCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDG 111 (355)
Q Consensus 44 ~vv~~~GDGa~~~G~~~EaL~~Aa-~~~LP--vi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG 111 (355)
++|.+.|.|+..+ ++--+. ..+++ +++||.||..... .++| .|+|.+..+.
T Consensus 2 i~vl~Sg~Gsn~~-----al~~~~~~~~l~~~i~~visn~~~~~~------------~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSNFR-----AIHDACLDGRVNGDVVVVVTNKPGCGG------------AEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEeCCChhHH-----HHHHHHHcCCCCeEEEEEEEeCCCChH------------HHHHHHhCCCEEEecc
Confidence 5677778777544 333333 34455 8888888862221 1222 4888887654
No 285
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.39 E-value=2.7e+02 Score=25.36 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=29.7
Q ss_pred cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560 39 KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG 81 (355)
Q Consensus 39 ~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~ 81 (355)
..++..++++..-|...+ ..+++..|...+.|+|.+..|.+
T Consensus 111 ~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 111 ARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 456777777777776654 56778888888888888776544
No 286
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=20.19 E-value=1.9e+02 Score=19.81 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=15.8
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHH
Q psy14560 304 VTKQDALLYYRQMQTIRRLETSA 326 (355)
Q Consensus 304 ~~~~~~~~~~~~m~~~r~~~~~~ 326 (355)
||++.+---=+.++|+|.|+...
T Consensus 2 LtpeQ~qHRE~qL~tlr~mq~~l 24 (40)
T PF11502_consen 2 LTPEQRQHRERQLATLRDMQRML 24 (40)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666678888999888654
Done!