Query psy14560
Match_columns 355
No_of_seqs 390 out of 2490
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:00:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_A PDHE1-A type I, pyruvat 100.0 1.2E-36 4E-41 300.0 19.4 179 13-191 133-323 (365)
2 1w85_A Pyruvate dehydrogenase 100.0 1.2E-35 4.1E-40 293.2 20.3 182 11-192 133-328 (368)
3 1qs0_A 2-oxoisovalerate dehydr 100.0 2.4E-35 8.1E-40 294.4 18.6 180 12-191 173-366 (407)
4 2bfd_A 2-oxoisovalerate dehydr 100.0 4.2E-34 1.4E-38 285.0 17.7 174 12-185 154-341 (400)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 1.8E-33 6.2E-38 277.5 19.1 180 12-191 136-328 (367)
6 2yic_A 2-oxoglutarate decarbox 100.0 3.2E-31 1.1E-35 285.2 12.2 174 14-187 239-439 (868)
7 2xt6_A 2-oxoglutarate decarbox 100.0 2.1E-30 7.2E-35 284.9 13.0 172 14-185 484-682 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 100.0 2.6E-28 9E-33 264.1 14.0 175 16-191 317-515 (933)
9 2e6k_A Transketolase; structur 99.9 3E-22 1E-26 210.6 14.1 139 13-157 111-263 (651)
10 1gpu_A Transketolase; transfer 99.9 4.1E-22 1.4E-26 210.5 13.3 139 11-153 107-260 (680)
11 2r8o_A Transketolase 1, TK 1; 99.9 1.3E-21 4.6E-26 206.3 15.3 137 12-152 106-257 (669)
12 3rim_A Transketolase, TK; TPP, 99.9 9.4E-22 3.2E-26 207.7 13.6 135 12-150 125-276 (700)
13 1r9j_A Transketolase; domains, 99.9 1.6E-21 5.5E-26 205.7 13.9 136 13-152 109-259 (673)
14 3mos_A Transketolase, TK; thia 99.9 2.4E-21 8.1E-26 202.6 14.4 139 13-157 114-256 (616)
15 3kom_A Transketolase; rossmann 99.9 2.6E-21 8.8E-26 203.7 13.4 133 13-150 109-256 (663)
16 1itz_A Transketolase; calvin c 99.8 4.8E-21 1.7E-25 202.2 14.8 135 12-150 119-268 (675)
17 3uk1_A Transketolase; structur 99.8 3.4E-21 1.2E-25 203.9 13.5 133 13-150 148-294 (711)
18 3l84_A Transketolase; TKT, str 99.8 3.4E-21 1.2E-25 201.7 12.9 135 12-151 106-250 (632)
19 2o1s_A 1-deoxy-D-xylulose-5-ph 99.8 1.6E-20 5.3E-25 196.5 15.3 130 16-149 117-290 (621)
20 4feg_A Pyruvate oxidase; carba 99.8 7.6E-21 2.6E-25 198.0 11.2 165 3-177 403-596 (603)
21 2o1x_A 1-deoxy-D-xylulose-5-ph 99.8 1.1E-20 3.7E-25 198.1 11.9 131 14-148 117-294 (629)
22 3m49_A Transketolase; alpha-be 99.8 2.2E-20 7.4E-25 197.3 13.6 135 12-151 132-281 (690)
23 2qtc_A Pyruvate dehydrogenase 99.7 5.9E-18 2E-22 182.7 12.3 132 15-149 187-398 (886)
24 1v5e_A Pyruvate oxidase; oxido 99.7 3.3E-17 1.1E-21 170.1 11.5 133 3-144 396-540 (590)
25 2pan_A Glyoxylate carboligase; 99.7 3.6E-17 1.2E-21 170.5 9.1 135 3-145 425-582 (616)
26 1ozh_A ALS, acetolactate synth 99.6 1.2E-16 4E-21 165.2 8.3 129 3-143 403-543 (566)
27 2ozl_A PDHE1-A type I, pyruvat 99.6 9E-17 3.1E-21 158.2 6.9 74 277-350 4-77 (365)
28 2uz1_A Benzaldehyde lyase; thi 99.6 1.3E-16 4.4E-21 164.6 8.4 129 4-142 403-545 (563)
29 1q6z_A BFD, BFDC, benzoylforma 99.6 8.1E-17 2.8E-21 164.8 6.2 128 3-143 385-525 (528)
30 1t9b_A Acetolactate synthase, 99.6 2.2E-16 7.4E-21 166.8 9.4 131 3-145 496-639 (677)
31 2iht_A Carboxyethylarginine sy 99.6 1.8E-16 6.3E-21 163.9 8.4 129 3-143 419-561 (573)
32 2vk8_A Pyruvate decarboxylase 99.6 1.1E-16 3.8E-21 165.0 6.8 134 3-143 396-542 (563)
33 1ybh_A Acetolactate synthase, 99.6 4.2E-16 1.4E-20 161.7 10.7 131 3-145 409-560 (590)
34 2pgn_A Cyclohexane-1,2-dione h 99.6 1.6E-16 5.5E-21 164.9 6.5 131 3-145 407-549 (589)
35 3eya_A Pyruvate dehydrogenase 99.6 4.4E-16 1.5E-20 160.2 9.4 130 3-144 389-530 (549)
36 2vbf_A Branched-chain alpha-ke 99.6 4.6E-16 1.6E-20 160.7 9.5 129 4-143 409-551 (570)
37 1ovm_A Indole-3-pyruvate decar 99.6 5.1E-16 1.7E-20 159.6 7.4 128 4-143 392-532 (552)
38 2vbi_A Pyruvate decarboxylase; 99.6 6.9E-16 2.3E-20 159.3 7.6 128 4-143 393-533 (566)
39 2wvg_A PDC, pyruvate decarboxy 99.6 1.2E-15 4.1E-20 157.5 8.3 129 4-143 397-541 (568)
40 2c31_A Oxalyl-COA decarboxylas 99.6 5E-15 1.7E-19 152.8 11.3 128 4-144 410-548 (568)
41 2q28_A Oxalyl-COA decarboxylas 99.6 4.2E-15 1.4E-19 153.2 10.3 127 5-144 406-545 (564)
42 2nxw_A Phenyl-3-pyruvate decar 99.6 3.5E-15 1.2E-19 154.1 8.4 123 9-143 411-542 (565)
43 2x7j_A 2-succinyl-5-enolpyruvy 99.5 4.4E-15 1.5E-19 154.5 3.1 121 10-143 445-580 (604)
44 3hww_A 2-succinyl-5-enolpyruvy 99.5 1.9E-14 6.5E-19 148.3 6.3 113 17-143 414-539 (556)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.4 1.3E-13 4.5E-18 142.7 4.7 109 22-144 438-561 (578)
46 1qs0_A 2-oxoisovalerate dehydr 99.3 1.6E-12 5.5E-17 129.6 4.7 108 155-274 79-196 (407)
47 3ahc_A Phosphoketolase, xylulo 99.3 5.8E-12 2E-16 134.6 9.0 132 10-145 165-322 (845)
48 2bfd_A 2-oxoisovalerate dehydr 99.2 6.2E-12 2.1E-16 125.1 5.1 109 155-275 60-178 (400)
49 2c42_A Pyruvate-ferredoxin oxi 98.9 2.4E-09 8.4E-14 119.4 10.8 97 42-144 953-1071(1231)
50 1w85_A Pyruvate dehydrogenase 98.9 9.7E-10 3.3E-14 108.1 4.5 102 155-275 49-158 (368)
51 1umd_A E1-alpha, 2-OXO acid de 98.8 3.6E-09 1.2E-13 104.0 6.2 105 158-274 46-159 (367)
52 2yic_A 2-oxoglutarate decarbox 98.3 9.8E-08 3.4E-12 103.1 2.0 110 155-275 123-261 (868)
53 2jgd_A 2-oxoglutarate dehydrog 98.3 1.9E-07 6.5E-12 101.5 4.0 110 155-276 203-338 (933)
54 2xt6_A 2-oxoglutarate decarbox 98.3 2.1E-07 7.2E-12 102.9 1.9 107 158-275 373-506 (1113)
55 2pgn_A Cyclohexane-1,2-dione h 91.7 1.6 5.5E-05 44.6 12.7 104 28-142 58-165 (589)
56 1ybh_A Acetolactate synthase, 90.6 0.92 3.1E-05 46.4 9.7 105 28-142 65-172 (590)
57 2uz1_A Benzaldehyde lyase; thi 90.5 1.1 3.8E-05 45.4 10.1 106 28-142 56-164 (563)
58 2iht_A Carboxyethylarginine sy 90.5 0.96 3.3E-05 46.1 9.6 105 28-142 63-171 (573)
59 3eya_A Pyruvate dehydrogenase 90.3 1.5 5.2E-05 44.3 10.9 105 28-142 56-162 (549)
60 1ozh_A ALS, acetolactate synth 90.2 1.1 3.7E-05 45.6 9.8 105 28-142 63-170 (566)
61 1yd7_A 2-keto acid:ferredoxin 89.5 0.38 1.3E-05 47.1 5.5 108 24-141 75-187 (395)
62 1t9b_A Acetolactate synthase, 89.1 1.8 6.1E-05 45.3 10.5 104 28-141 135-241 (677)
63 3kom_A Transketolase; rossmann 88.6 2 6.8E-05 45.0 10.4 102 26-138 416-518 (663)
64 4feg_A Pyruvate oxidase; carba 88.3 1.5 5.1E-05 45.0 9.2 104 28-142 65-171 (603)
65 2wvg_A PDC, pyruvate decarboxy 87.5 1.7 5.8E-05 44.1 9.0 106 28-142 56-169 (568)
66 2nxw_A Phenyl-3-pyruvate decar 87.5 1.8 6.3E-05 43.9 9.2 107 28-142 74-186 (565)
67 3l84_A Transketolase; TKT, str 86.7 2.6 8.7E-05 43.9 9.9 101 27-139 396-497 (632)
68 2c31_A Oxalyl-COA decarboxylas 86.6 1.6 5.5E-05 44.3 8.1 107 28-142 62-171 (568)
69 1itz_A Transketolase; calvin c 86.4 3 0.0001 43.6 10.3 101 28-139 429-531 (675)
70 1q6z_A BFD, BFDC, benzoylforma 86.4 2.1 7.1E-05 43.0 8.8 107 27-142 52-161 (528)
71 2vbi_A Pyruvate decarboxylase; 86.3 1.6 5.5E-05 44.3 8.0 107 27-142 55-169 (566)
72 2q28_A Oxalyl-COA decarboxylas 86.1 1.6 5.6E-05 44.1 7.9 105 28-142 60-169 (564)
73 2o1s_A 1-deoxy-D-xylulose-5-ph 85.9 1.8 6E-05 44.8 8.1 101 26-139 374-476 (621)
74 2r8o_A Transketolase 1, TK 1; 85.7 3.6 0.00012 42.9 10.4 101 27-138 416-517 (669)
75 1v5e_A Pyruvate oxidase; oxido 85.6 1.7 5.8E-05 44.5 7.7 105 27-142 57-164 (590)
76 2e6k_A Transketolase; structur 85.0 3.9 0.00013 42.5 10.2 101 27-139 411-513 (651)
77 2x7j_A 2-succinyl-5-enolpyruvy 84.5 2.1 7.4E-05 43.8 7.9 107 28-142 84-198 (604)
78 3uk1_A Transketolase; structur 84.0 5.2 0.00018 42.2 10.7 101 26-138 461-562 (711)
79 1gpu_A Transketolase; transfer 83.7 3.5 0.00012 43.2 9.2 101 27-138 423-525 (680)
80 2pan_A Glyoxylate carboligase; 83.7 4.9 0.00017 41.1 10.3 104 28-142 80-188 (616)
81 2o1x_A 1-deoxy-D-xylulose-5-ph 83.6 1.6 5.5E-05 45.2 6.6 100 26-139 377-478 (629)
82 3mos_A Transketolase, TK; thia 83.3 4.5 0.00015 41.8 9.8 101 26-138 368-469 (616)
83 3m49_A Transketolase; alpha-be 82.2 5.3 0.00018 42.0 9.9 101 27-138 441-542 (690)
84 3lq1_A 2-succinyl-5-enolpyruvy 81.3 4.3 0.00015 41.2 8.7 106 28-141 64-177 (578)
85 3rim_A Transketolase, TK; TPP, 79.5 7.3 0.00025 41.0 9.8 101 27-138 446-549 (700)
86 1r9j_A Transketolase; domains, 79.2 6.6 0.00022 41.0 9.4 101 28-139 417-518 (673)
87 1qs0_B 2-oxoisovalerate dehydr 78.5 4.3 0.00015 38.4 7.1 99 25-140 64-174 (338)
88 2vbf_A Branched-chain alpha-ke 77.5 6.2 0.00021 39.9 8.4 106 27-142 77-190 (570)
89 2vk8_A Pyruvate decarboxylase 77.1 5.3 0.00018 40.3 7.8 107 27-142 56-170 (563)
90 1ovm_A Indole-3-pyruvate decar 74.4 8.7 0.0003 38.6 8.5 106 27-142 57-170 (552)
91 2ozl_B PDHE1-B, pyruvate dehyd 73.6 6.3 0.00021 37.6 6.8 96 26-139 75-183 (341)
92 1ik6_A Pyruvate dehydrogenase; 73.1 10 0.00036 36.5 8.4 97 26-139 111-219 (369)
93 1umd_B E1-beta, 2-OXO acid deh 70.7 16 0.00054 34.3 8.8 96 26-138 64-171 (324)
94 1w85_B Pyruvate dehydrogenase 68.2 10 0.00036 35.6 7.0 98 25-138 62-170 (324)
95 3hww_A 2-succinyl-5-enolpyruvy 67.1 21 0.00073 35.9 9.5 104 28-141 61-170 (556)
96 2c42_A Pyruvate-ferredoxin oxi 67.1 17 0.00059 40.7 9.4 109 25-148 66-178 (1231)
97 2bfd_B 2-oxoisovalerate dehydr 61.1 14 0.00047 35.1 6.4 97 26-139 80-189 (342)
98 4hhu_A OR280; engineered prote 41.8 1.4E+02 0.0048 24.3 9.9 92 44-135 4-115 (170)
99 2kl8_A OR15; structural genomi 32.7 55 0.0019 23.8 4.1 29 107-135 5-33 (85)
100 4hhu_A OR280; engineered prote 30.6 55 0.0019 26.7 4.3 34 103-136 2-35 (170)
101 3hyn_A Putative signal transdu 27.0 46 0.0016 29.2 3.5 37 42-79 80-118 (189)
102 3tso_C RAB11 family-interactin 25.3 77 0.0026 23.6 3.9 31 301-331 11-49 (75)
103 3ibs_A Conserved hypothetical 23.9 1.7E+02 0.0059 24.4 6.7 39 42-80 111-149 (218)
104 3ehd_A Uncharacterized conserv 21.7 2E+02 0.0068 24.2 6.4 37 43-81 71-108 (162)
No 1
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=1.2e-36 Score=299.99 Aligned_cols=179 Identities=65% Similarity=1.173 Sum_probs=165.4
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccC
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSS 92 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~ 92 (355)
.++.+++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.++|+||+|++++||+||||+||+|+++++.....
T Consensus 133 ~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~ 212 (365)
T 2ozl_A 133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA 212 (365)
T ss_dssp TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHC
T ss_pred cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCccccc
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999998776666
Q ss_pred CCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------------cch
Q psy14560 93 ASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------------DPI 160 (355)
Q Consensus 93 ~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------------DpI 160 (355)
..++|+++|+|+++++|||+|+++|++++++|+++++++++|+|||+.|+|..||+++||+..|| |||
T Consensus 213 ~~~~~~~ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi 292 (365)
T 2ozl_A 213 ASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPI 292 (365)
T ss_dssp SCCCGGGTTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHH
T ss_pred CCCCHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHH
Confidence 67889989999999999999999999999999999999999999999999999999999877687 899
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560 161 TSFKEKMLNSELATVDELKEACAVGMRAVMR 191 (355)
Q Consensus 161 r~fee~Li~~Gl~t~~e~qEa~qvg~~~al~ 191 (355)
.+|+++|+++|++++++++++.++....+.+
T Consensus 293 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 323 (365)
T 2ozl_A 293 MLLKDRMVNSNLASVEELKEIDVEVRKEIED 323 (365)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887776554443
No 2
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=1.2e-35 Score=293.18 Aligned_cols=182 Identities=30% Similarity=0.497 Sum_probs=163.0
Q ss_pred CCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc
Q psy14560 11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER 90 (355)
Q Consensus 11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~ 90 (355)
...++.+++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.++|+|++|++++||+||||+||+|+++++...
T Consensus 133 ~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~ 212 (368)
T 1w85_A 133 EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEK 212 (368)
T ss_dssp TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGG
T ss_pred cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceecccc
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC-CCCCCccee----------
Q psy14560 91 SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS-MSDPGTSFR---------- 157 (355)
Q Consensus 91 ~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs-~~D~~~~YR---------- 157 (355)
..+.++++++ |+|+++++|||+|+++|++++++|++++|++++|+|||+.|+|..||+ ++|++..||
T Consensus 213 ~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~ 292 (368)
T 1w85_A 213 QTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK 292 (368)
T ss_dssp TCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT
T ss_pred ccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc
Confidence 6677889887 479999999999999999999999999999999999999999999999 988788887
Q ss_pred -cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcc
Q psy14560 158 -DPITSFKEKMLNSELATVDELKEACAVGMRAVMRE 192 (355)
Q Consensus 158 -DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~ 192 (355)
|||.+|+++|++.|++++++++++.++....+.++
T Consensus 293 ~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 328 (368)
T 1w85_A 293 KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEA 328 (368)
T ss_dssp TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887776555543
No 3
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=2.4e-35 Score=294.38 Aligned_cols=180 Identities=31% Similarity=0.427 Sum_probs=165.2
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS 91 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~ 91 (355)
..++.+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.++|+|++|++|+||+||||+||+|+++++....
T Consensus 173 ~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~ 252 (407)
T 1qs0_A 173 EAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIA 252 (407)
T ss_dssp GGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGG
T ss_pred ccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred C-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----------
Q psy14560 92 S-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----------- 157 (355)
Q Consensus 92 ~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----------- 157 (355)
. ..++++++ |+|+++++|||+|+++|++++++|++++|++++|+|||+.|+|..||+++|++..||
T Consensus 253 ~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~~ 332 (407)
T 1qs0_A 253 GGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLG 332 (407)
T ss_dssp TTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTTC
T ss_pred cCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhcC
Confidence 5 46788876 589999999999999999999999999999999999999999999999999888887
Q ss_pred cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560 158 DPITSFKEKMLNSELATVDELKEACAVGMRAVMR 191 (355)
Q Consensus 158 DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~ 191 (355)
|||.+|+++|++.|++++++++++.++....+.+
T Consensus 333 DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 366 (407)
T 1qs0_A 333 DPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIA 366 (407)
T ss_dssp CHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776544443
No 4
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=4.2e-34 Score=284.96 Aligned_cols=174 Identities=29% Similarity=0.471 Sum_probs=151.0
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS 91 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~ 91 (355)
..++.+++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.+||+|++|++++||+|+||+||+|+++++....
T Consensus 154 ~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~ 233 (400)
T 2bfd_A 154 ERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 233 (400)
T ss_dssp TTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGT
T ss_pred ccCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeeccccc
Confidence 35577888999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------------
Q psy14560 92 SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------------ 157 (355)
Q Consensus 92 ~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------------ 157 (355)
.+.++++++ |+|+++++|||+|+++|++|+++|++++|++++|+|||+.|+|..||+++|++..||
T Consensus 234 ~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~ 313 (400)
T 2bfd_A 234 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQD 313 (400)
T ss_dssp CSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------C
T ss_pred CCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcC
Confidence 777889887 479999999999999999999999999999999999999999999999998877787
Q ss_pred cchhHHHHHHHHhhhhhhhhHHHHHHhh
Q psy14560 158 DPITSFKEKMLNSELATVDELKEACAVG 185 (355)
Q Consensus 158 DpIr~fee~Li~~Gl~t~~e~qEa~qvg 185 (355)
|||.+|+++|++.|++++++.+++.++.
T Consensus 314 dPl~~~~~~L~~~g~~~~~~~~~i~~~~ 341 (400)
T 2bfd_A 314 HPISRLRHYLLSQGWWDEEQEKAWRKQS 341 (400)
T ss_dssp CHHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence 6999999999999999988887554443
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.8e-33 Score=277.49 Aligned_cols=180 Identities=31% Similarity=0.476 Sum_probs=164.2
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS 91 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~ 91 (355)
..++.+.+|++|.++|.|+|+|+|.|+++++++|||++|||++++|.++|+|++|+++++|+|+||.||+|+++++....
T Consensus 136 ~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~ 215 (367)
T 1umd_A 136 ALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQ 215 (367)
T ss_dssp TTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHH
T ss_pred ccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhc
Confidence 45677789999999999999999999999999999999999999999999999999999999999999999998887666
Q ss_pred CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----------c
Q psy14560 92 SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------D 158 (355)
Q Consensus 92 ~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-----------D 158 (355)
.+.+++.++ |+|+++++|||+|+.+|++++++|+++++++++|+|||+.|+|..||+.+|++..|| |
T Consensus 216 ~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~~~d 295 (367)
T 1umd_A 216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKD 295 (367)
T ss_dssp CSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHHcCC
Confidence 666788887 479999999999999999999999999999999999999999999999999888887 9
Q ss_pred chhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560 159 PITSFKEKMLNSELATVDELKEACAVGMRAVMR 191 (355)
Q Consensus 159 pIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~ 191 (355)
||.+|+++|+++|++++++++++.++....+.+
T Consensus 296 Pi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (367)
T 1umd_A 296 PIPRFRRFLEARGLWNEEWEEDVREEIRAELER 328 (367)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998777766544433
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.97 E-value=3.2e-31 Score=285.25 Aligned_cols=174 Identities=24% Similarity=0.221 Sum_probs=153.8
Q ss_pred ccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEe
Q psy14560 14 NFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCEN 79 (355)
Q Consensus 14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~N 79 (355)
++.+.+++||+++|+|+|+|+|.|+.+ .+.+++|++|||++ ++|.+||+||+|+.++|| +||||+|
T Consensus 239 ~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~N 318 (868)
T 2yic_A 239 SLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVN 318 (868)
T ss_dssp EECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEE
T ss_pred eecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 455678999999999999999999864 56799999999995 899999999999999999 9999999
Q ss_pred CCCcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560 80 NGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157 (355)
Q Consensus 80 N~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR 157 (355)
|+|+++++.....+.+++.++ ++|+++++|||+|+++|++|+++|++++|++++|+|||+.|+|..||+++|++..|+
T Consensus 319 N~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~ 398 (868)
T 2yic_A 319 NQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ 398 (868)
T ss_dssp CSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTC
T ss_pred CCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCC
Confidence 999999875544444566665 579999999999999999999999999999999999999999999999999887554
Q ss_pred -----------cchhHHHHHHHHhhhhhhhhHHHHHHhhHH
Q psy14560 158 -----------DPITSFKEKMLNSELATVDELKEACAVGMR 187 (355)
Q Consensus 158 -----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~ 187 (355)
||+.+|+++|+++|++++++.+++.++...
T Consensus 399 p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~ 439 (868)
T 2yic_A 399 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQG 439 (868)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998777665533
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.96 E-value=2.1e-30 Score=284.95 Aligned_cols=172 Identities=24% Similarity=0.235 Sum_probs=152.9
Q ss_pred ccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCccc-ccccHHHHHHHHHHHcCCC---EEEEEEe
Q psy14560 14 NFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVCEN 79 (355)
Q Consensus 14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LP---vi~Vv~N 79 (355)
++.+.+|+||.++|+|+|+|+|.|+.+ .+..++|++|||+ +++|.+||+||+|+.++|| +||||+|
T Consensus 484 ~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~N 563 (1113)
T 2xt6_A 484 SLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVN 563 (1113)
T ss_dssp EECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEE
T ss_pred eecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEe
Confidence 455678999999999999999999865 5789999999999 5999999999999999999 9999999
Q ss_pred CCCcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560 80 NGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157 (355)
Q Consensus 80 N~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR 157 (355)
|+|+++++.....+.+++.++ ++|+++++|||+|+++|++|+++|++++|++++|+|||+.|+|..||+++|++..|+
T Consensus 564 N~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~ 643 (1113)
T 2xt6_A 564 NQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ 643 (1113)
T ss_dssp CSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTC
T ss_pred CCcccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCC
Confidence 999999875534344455555 579999999999999999999999999999999999999999999999999887554
Q ss_pred -----------cchhHHHHHHHHhhhhhhhhHHHHHHhh
Q psy14560 158 -----------DPITSFKEKMLNSELATVDELKEACAVG 185 (355)
Q Consensus 158 -----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg 185 (355)
||+.+|+++|+++|++++++++++.++.
T Consensus 644 ~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~ 682 (1113)
T 2xt6_A 644 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDY 682 (1113)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8999999999999999999997766554
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.95 E-value=2.6e-28 Score=264.09 Aligned_cols=175 Identities=20% Similarity=0.215 Sum_probs=137.4
Q ss_pred ccCCcccccchHHHHHHHHHHHhcC-----CCCeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEeCCCccee
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKG-----TGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCENNGYGMGT 86 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~-----~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~~~~ 86 (355)
....+++|.++|+|+|+|+|.++.+ .+..+||++|||++ ++|.+||+||+|+.+++| +|+||+||+|++++
T Consensus 317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist 396 (933)
T 2jgd_A 317 AFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTT 396 (933)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----
T ss_pred cccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccC
Confidence 4567899999999999999999874 67899999999997 999999999999999999 99999999999999
Q ss_pred -eccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------
Q psy14560 87 -SAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------ 157 (355)
Q Consensus 87 -~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------ 157 (355)
+.......+++.++ ++|+|+++|||+|+++|++++++|+++++++++|+|||+.|+|..||+.+|++. ||
T Consensus 397 ~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~-yr~~~e~~ 475 (933)
T 2jgd_A 397 SNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPS-ATQPLMYQ 475 (933)
T ss_dssp ----------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHH
T ss_pred CCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchh-hCCHHHHH
Confidence 77765555677766 479999999999999999999999999999999999999999999999998764 64
Q ss_pred ------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560 158 ------DPITSFKEKMLNSELATVDELKEACAVGMRAVMR 191 (355)
Q Consensus 158 ------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~ 191 (355)
||+.+|+++|+++|++++++.+++.++....+.+
T Consensus 476 ~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~ 515 (933)
T 2jgd_A 476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDA 515 (933)
T ss_dssp HHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888776555443
No 9
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.87 E-value=3e-22 Score=210.56 Aligned_cols=139 Identities=21% Similarity=0.249 Sum_probs=121.7
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG 81 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~ 81 (355)
.++..++|+||+++|.|+|+|+|.++.+ +++.|+|++|||++++|.+||+|++|++++|| +|+||+||+
T Consensus 111 ~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 190 (651)
T 2e6k_A 111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNR 190 (651)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred CCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCC
Confidence 4677789999999999999999988654 68999999999999999999999999999999 999999999
Q ss_pred CcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560 82 YGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157 (355)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR 157 (355)
|+++.+..... .+|+.++ |+||+++ +|||+|++++++++++|.+ .++|+||++.|++.+||+.+|+ ..|+
T Consensus 191 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~-~~~H 263 (651)
T 2e6k_A 191 ISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDS-AKAH 263 (651)
T ss_dssp EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTS-GGGT
T ss_pred ccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccccccc-cccc
Confidence 99988776655 5788876 6899999 9999999999988888764 6789999999999999995444 3454
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.87 E-value=4.1e-22 Score=210.47 Aligned_cols=139 Identities=18% Similarity=0.180 Sum_probs=121.5
Q ss_pred CCCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEe
Q psy14560 11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCEN 79 (355)
Q Consensus 11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~N 79 (355)
...++..++|+||+++|.|+|+|+|.++.+ .++.|+|++|||++++|.+||+|++|+.++|| +|+||+|
T Consensus 107 ~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~n 186 (680)
T 1gpu_A 107 ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDD 186 (680)
T ss_dssp TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEEC
Confidence 355777889999999999999999988653 38899999999999999999999999999999 9999999
Q ss_pred CCCcceeeccccCCCccHhhh--cCCcceE-EEeCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCC
Q psy14560 80 NGYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGM-DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPG 153 (355)
Q Consensus 80 N~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~ 153 (355)
|+|+++.+..... .+|+.++ |+||+++ +|||+ |++++++++++|.+ ..++|+||++.|++.+||+.+|+.
T Consensus 187 N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~ 260 (680)
T 1gpu_A 187 NKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSH 260 (680)
T ss_dssp CSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSG
T ss_pred CCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCC
Confidence 9999988766543 5788876 5799999 99999 99999988888764 357899999999999999977653
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.86 E-value=1.3e-21 Score=206.26 Aligned_cols=137 Identities=20% Similarity=0.214 Sum_probs=119.4
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|+||+++|.|+|+|+|.++.+ .++.|+|++|||++++|.+||+|++|+.++|| +|+||+||
T Consensus 106 ~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN 185 (669)
T 2r8o_A 106 TAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDN 185 (669)
T ss_dssp STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred CCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECC
Confidence 45778889999999999999999988653 37899999999999999999999999999999 99999999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC-CCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM-SDP 152 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~-~D~ 152 (355)
+|+++.+..... .+|+.++ |+||+++ +|||+|++++.+++++|.+ ..++|+||++.|++..||+. +++
T Consensus 186 ~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~ 257 (669)
T 2r8o_A 186 GISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGT 257 (669)
T ss_dssp SEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTS
T ss_pred CcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCC
Confidence 999988766543 4688776 6899999 9999999999988888764 35789999999999999984 443
No 12
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.86 E-value=9.4e-22 Score=207.73 Aligned_cols=135 Identities=18% Similarity=0.152 Sum_probs=118.9
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhc-------------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEE
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYK-------------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVC 77 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~-------------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv 77 (355)
..++..++|++|+++|.|+|+|+|.|+. ..++.|+|++|||++++|.+||++++|+.++|| +|+||
T Consensus 125 ~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~ 204 (700)
T 3rim_A 125 TPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFY 204 (700)
T ss_dssp BTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEE
Confidence 3467778899999999999999999974 457899999999999999999999999999998 99999
Q ss_pred EeCCCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560 78 ENNGYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 78 ~NN~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~ 150 (355)
+||+|+++.+..... ..++.++ |+||++++| ||+|+++|++|+++|.+ ..++|+||++.|++.+||+..
T Consensus 205 d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~ 276 (700)
T 3rim_A 205 DRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNL 276 (700)
T ss_dssp EECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTT
T ss_pred ECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCcc
Confidence 999999998876543 5778776 579999999 99999999888887653 368999999999999999853
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.86 E-value=1.6e-21 Score=205.72 Aligned_cols=136 Identities=19% Similarity=0.160 Sum_probs=120.0
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG 81 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~ 81 (355)
.++..++|+||+++|.|+|+|+|.++.+ .++.|+|++|||++++|.+||++++|++++|| +|+||+||+
T Consensus 109 pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~ 188 (673)
T 1r9j_A 109 PGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNY 188 (673)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred CCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 4667789999999999999999998654 58899999999999999999999999999999 999999999
Q ss_pred CcceeeccccCCCccHhhh--cCCcceE-EEeC-CCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCC
Q psy14560 82 YGMGTSAERSSASTDYYTR--GDYIPGI-WVDG-MDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDP 152 (355)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG-~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~ 152 (355)
|+++.+..... .+|+.++ |+||+++ +||| +|++++++|+++|.+ ..++|+||++.|.+.+||+.++.
T Consensus 189 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~ 259 (673)
T 1r9j_A 189 ISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGT 259 (673)
T ss_dssp BCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTS
T ss_pred Cccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCC
Confidence 99988776655 5788876 6899999 9999 999999998887754 36899999999999999985543
No 14
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.85 E-value=2.4e-21 Score=202.57 Aligned_cols=139 Identities=21% Similarity=0.266 Sum_probs=117.2
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCC-CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccc
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT-GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAER 90 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~ 90 (355)
.++..++|+||+++|+|+|+|+|.++.+. ++.|+|++|||++++|.+||+|++|+.++|| +++|++||+|+++.+...
T Consensus 114 ~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~ 193 (616)
T 3mos_A 114 AFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPL 193 (616)
T ss_dssp TTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTT
T ss_pred CcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCccc
Confidence 34556789999999999999999886544 6899999999999999999999999999998 777888999999877665
Q ss_pred cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560 91 SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157 (355)
Q Consensus 91 ~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR 157 (355)
....+++.++ |+||++++|||+|++++.++++++ .++|+||++.|+|.+||+..+++..+.
T Consensus 194 ~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~~~~H 256 (616)
T 3mos_A 194 QHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDKESWH 256 (616)
T ss_dssp TTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTCSSCT
T ss_pred ccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccCchhhc
Confidence 5555678776 589999999999999888877432 578999999999999998655444444
No 15
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.85 E-value=2.6e-21 Score=203.66 Aligned_cols=133 Identities=21% Similarity=0.226 Sum_probs=110.9
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG 81 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~ 81 (355)
.++..++|+||+++|+|+|+|+|.++.+. ++.|+|++|||++++|.++|+|++|++++|| +|+|++||+
T Consensus 109 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~ 188 (663)
T 3kom_A 109 PGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNN 188 (663)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC
T ss_pred CCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCC
Confidence 35556889999999999999999986543 7899999999999999999999999999999 889999999
Q ss_pred CcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEeeeeCCCCCC
Q psy14560 82 YGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASS-GKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~R~~GHs~~ 150 (355)
|+++.+..... .+|+.++ |+||+++ +|||+|++++.+|+++|. + .++|+||++.|++.+||+..
T Consensus 189 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~----~~~~~P~lI~~~T~kg~G~~~~ 256 (663)
T 3kom_A 189 ISIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAH----SQQQKPTLICCKTVIGFGSPEK 256 (663)
T ss_dssp -----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH----HCSSSCEEEEEECCTTTTCTTT
T ss_pred cccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHH----hcCCCCEEEEEecccccccCCC
Confidence 99987766543 5788886 6899999 999999998887776654 4 58999999999999999854
No 16
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.85 E-value=4.8e-21 Score=202.16 Aligned_cols=135 Identities=22% Similarity=0.249 Sum_probs=118.4
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|+||+++|.|+|+|+|.++.+ +++.|+|++|||++++|.+||+|++|++++|| +|+|++||
T Consensus 119 ~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN 198 (675)
T 1itz_A 119 TPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDN 198 (675)
T ss_dssp CTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred CCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECC
Confidence 34667788999999999999999998765 78999999999999999999999999999995 99999999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceE-EEeCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGM-DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~ 150 (355)
+|+++.+..... .+|+.++ |+||+++ +|||+ |++++.+|+++|.+ ..++|+||++.|.+..||+..
T Consensus 199 ~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~ 268 (675)
T 1itz_A 199 HISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNK 268 (675)
T ss_dssp SEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTT
T ss_pred CccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccc
Confidence 999988776544 6788876 6899999 99999 99999888877653 257899999999999999853
No 17
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.85 E-value=3.4e-21 Score=203.92 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=108.2
Q ss_pred CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG 81 (355)
Q Consensus 13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~ 81 (355)
.++..++|+||+++|+|+|+|+|.++.+. ++.|+|++|||++++|.++|+|++|++++|| +|+|++||+
T Consensus 148 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~ 227 (711)
T 3uk1_A 148 PGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNG 227 (711)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCC
Confidence 35557889999999999999999986542 7899999999999999999999999999999 999999999
Q ss_pred CcceeeccccCCCccHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560 82 YGMGTSAERSSASTDYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS 150 (355)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~ 150 (355)
|+++.+..... .+|+.++ |+||++++ |||+|++++.+|+++| ++.++|+||++.|++.+||+..
T Consensus 228 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A----~~~~~P~lI~v~T~kG~G~~~~ 294 (711)
T 3uk1_A 228 ISIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKA----KRSDKPSLICCKTRIGNGAATK 294 (711)
T ss_dssp EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHH----TTCSSCEEEEEEC---------
T ss_pred cccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH----HhCCCCEEEEEccccccCCCCC
Confidence 99987766553 5788886 58999998 9999999887777665 4578999999999999999753
No 18
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.85 E-value=3.4e-21 Score=201.71 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=117.1
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcC-------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCc
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG-------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYG 83 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~-------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~ 83 (355)
..++..++|+||+++|.|+|+|+|.++.+ .++.|+|++|||++++|.+||+|++|++++|| +|+|++||+|+
T Consensus 106 ~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~ 185 (632)
T 3l84_A 106 TLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS 185 (632)
T ss_dssp STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred CCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence 45667788999999999999999998764 38999999999999999999999999999998 99999999999
Q ss_pred ceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCC
Q psy14560 84 MGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD 151 (355)
Q Consensus 84 ~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D 151 (355)
++.+..... .+|+.++ |+||++++|||+|++++.+|+++| ++.++|+||++.|.+.+||+..+
T Consensus 186 i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A----~~~~~P~lI~v~T~kG~G~~~~e 250 (632)
T 3l84_A 186 IEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQA----KKSTKPCLIIAKTTIAKGAGELE 250 (632)
T ss_dssp TTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHH----HTCSSCEEEEEECCTTTTCGGGT
T ss_pred cccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHH----HhCCCCEEEEEeeEeeecCCCCC
Confidence 987766543 5788876 689999999999999887776665 45789999999999999998533
No 19
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.84 E-value=1.6e-20 Score=196.55 Aligned_cols=130 Identities=26% Similarity=0.257 Sum_probs=103.6
Q ss_pred ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCC--
Q psy14560 16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSA-- 93 (355)
Q Consensus 16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~-- 93 (355)
..++|+||+++|+|+|+|+|.++++++++|||++|||++++|.+||+|++|+++++|+|+||+||+|+++.+...+..
T Consensus 117 ~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~ 196 (621)
T 2o1s_A 117 VLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHL 196 (621)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC--------------
T ss_pred ccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHH
Confidence 345899999999999999999999999999999999999999999999999999999999999999998866432110
Q ss_pred --------------------------------CccH-------hh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHHHcC
Q psy14560 94 --------------------------------STDY-------YT--RGDYIPGI-WVDGMDVLAVREASKFAVNYASSG 131 (355)
Q Consensus 94 --------------------------------~~d~-------~~--~A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~ 131 (355)
..++ .+ .++|++++ +|||+|++++.+++++|. +.
T Consensus 197 ~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~----~~ 272 (621)
T 2o1s_A 197 AQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMR----DL 272 (621)
T ss_dssp ------------------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH----HS
T ss_pred HhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHH----Hc
Confidence 0011 22 25799999 999999999888887765 35
Q ss_pred CCCeEEEEEeeeeCCCCC
Q psy14560 132 KGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 132 ~gP~lIev~t~R~~GHs~ 149 (355)
++|+||++.|++.+||+.
T Consensus 273 ~gP~lI~v~t~kg~G~~~ 290 (621)
T 2o1s_A 273 KGPQFLHIMTKKGRGYEP 290 (621)
T ss_dssp CSEEEEEEECCCTTCCCC
T ss_pred CCCEEEEEEEecccCCCh
Confidence 899999999999999984
No 20
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.83 E-value=7.6e-21 Score=198.03 Aligned_cols=165 Identities=12% Similarity=0.150 Sum_probs=123.1
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|..+...++.|+||+++|.|+|++++ .++++|||++|||+++++ +++|++|+++++|+++||.||+
T Consensus 403 ~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala----~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~ 476 (603)
T 4feg_A 403 RHLKLTPSNRHITSNLFATMGVGIPGAIAAKLN----YPERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQ 476 (603)
T ss_dssp HHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred HhceeCCCCceecCcccccccchhHHHhhHHHh----CCCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCc
Confidence 345666676666667789999999999999998 468899999999998775 5669999999999999999887
Q ss_pred Cccee----------eccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe---eeeCC
Q psy14560 82 YGMGT----------SAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT---YRYSG 146 (355)
Q Consensus 82 ~~~~~----------~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t---~R~~G 146 (355)
|++.. ........+||.++ |+|+++++|++ ++++.+++++|++ .+.+||+|||+.| +|...
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~ 552 (603)
T 4feg_A 477 YGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNK--IEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPA 552 (603)
T ss_dssp CHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECB--GGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCT
T ss_pred hHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCc
Confidence 87632 11122345788887 57999999985 4456555555432 1678999999999 44557
Q ss_pred CCCCCCCccee-------------cchhHHHHHHHHhhhhhhhh
Q psy14560 147 HSMSDPGTSFR-------------DPITSFKEKMLNSELATVDE 177 (355)
Q Consensus 147 Hs~~D~~~~YR-------------DpIr~fee~Li~~Gl~t~~e 177 (355)
|...|+...|+ ||+..|+++|.++|++++++
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~g~~~~~~ 596 (603)
T 4feg_A 553 EKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQH 596 (603)
T ss_dssp TSCCCCTTTSCHHHHHHHHHHHTCTTCCCHHHHHHHTTC-----
T ss_pred ccchhhhhhhhHHHHHHHHhhCCcccCCchHHHHHHcCCchhhh
Confidence 77766665553 88999999999999877654
No 21
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.83 E-value=1.1e-20 Score=198.06 Aligned_cols=131 Identities=20% Similarity=0.166 Sum_probs=109.8
Q ss_pred ccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc--
Q psy14560 14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS-- 91 (355)
Q Consensus 14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~-- 91 (355)
+...++|+||+++|+|+|+|+|.|+++++++|||++|||++++|.++|+|++|+++++|+|+||+||+|+++++....
T Consensus 117 ~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~ 196 (629)
T 2o1x_A 117 HDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNK 196 (629)
T ss_dssp TCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHH
T ss_pred CCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999999987654311
Q ss_pred -CC-----------------------C---------ccHh---------hh--cCCcceE-EEeCCCHHHHHHHHHHHHH
Q psy14560 92 -SA-----------------------S---------TDYY---------TR--GDYIPGI-WVDGMDVLAVREASKFAVN 126 (355)
Q Consensus 92 -~~-----------------------~---------~d~~---------~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~ 126 (355)
.. . +++. ++ ++|++++ +|||+|++++.+++++|
T Consensus 197 ~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A-- 274 (629)
T 2o1x_A 197 FMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERL-- 274 (629)
T ss_dssp HC---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHH--
T ss_pred HHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHH--
Confidence 00 0 1322 43 5799999 99999999887777665
Q ss_pred HHHcCCCCeEEEEEeeeeCCCC
Q psy14560 127 YASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 127 ~ar~~~gP~lIev~t~R~~GHs 148 (355)
++.++|+||++.|++.+||+
T Consensus 275 --~~~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 275 --VDLDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp --TTSSSEEEEEEECCTTTTCH
T ss_pred --HhcCCCEEEEEEEecCCCCC
Confidence 45689999999999999886
No 22
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.83 E-value=2.2e-20 Score=197.26 Aligned_cols=135 Identities=24% Similarity=0.265 Sum_probs=115.1
Q ss_pred CCccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN 80 (355)
Q Consensus 12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN 80 (355)
..++..++|+||+++|.|+|+|+|.++.+. ++.|+|++|||++++|.++|+|++|++++|| +|+|++||
T Consensus 132 ~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN 211 (690)
T 3m49_A 132 TAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSN 211 (690)
T ss_dssp STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred CCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECC
Confidence 345566889999999999999999986542 8899999999999999999999999999998 88899999
Q ss_pred CCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEeeeeCCCCCCC
Q psy14560 81 GYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASS-GKGPLVLEVVTYRYSGHSMSD 151 (355)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~R~~GHs~~D 151 (355)
+|+++.+.... ..+|+.++ |+||++++| ||+|++++.+|+++| ++ .++|+||++.|.+.+|++..+
T Consensus 212 ~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a----~~~~~~P~lI~v~T~kG~G~~~~~ 281 (690)
T 3m49_A 212 DISLDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEA----KADEKRPTLIEVRTTIGFGSPNKS 281 (690)
T ss_dssp SBCSSSBGGGT-CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHH----HHCCSSCEEEEEECCTTTTCTTTT
T ss_pred Ceecccchhhc-cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHH----HhcCCCCEEEEEEeecccccCccc
Confidence 99998776543 34788876 579999999 999999888776654 44 689999999999999997533
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.74 E-value=5.9e-18 Score=182.69 Aligned_cols=132 Identities=17% Similarity=0.059 Sum_probs=114.3
Q ss_pred cccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560 15 FYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT 86 (355)
Q Consensus 15 ~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~ 86 (355)
+..++|+||.+++.|+|+|++.|+ .++++.|+|++|||++++|++||+|++|+.++|| +|+||+||+++++.
T Consensus 187 ~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~ 266 (886)
T 2qtc_A 187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDG 266 (886)
T ss_dssp CCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred ccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCC
Confidence 556789999999999999999998 7789999999999999999999999999999997 99999999999987
Q ss_pred eccccC-CCccHhhh--cCCcceEEE------------------------------------------------------
Q psy14560 87 SAERSS-ASTDYYTR--GDYIPGIWV------------------------------------------------------ 109 (355)
Q Consensus 87 ~~~~~~-~~~d~~~~--A~G~~~~~V------------------------------------------------------ 109 (355)
+..... ...++.++ ++||++++|
T Consensus 267 ~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~ 346 (886)
T 2qtc_A 267 PVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAA 346 (886)
T ss_dssp BSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHT
T ss_pred CccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHH
Confidence 765421 23455554 679999988
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560 110 ---------------DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM 149 (355)
Q Consensus 110 ---------------dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~ 149 (355)
||||+.+|++|+++|.+. .++|+||++.|.+.+||+.
T Consensus 347 l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~ 398 (886)
T 2qtc_A 347 LVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGD 398 (886)
T ss_dssp TTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTT
T ss_pred HHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccch
Confidence 699999999999887653 3589999999999999973
No 24
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.70 E-value=3.3e-17 Score=170.13 Aligned_cols=133 Identities=15% Similarity=0.140 Sum_probs=106.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...++.|+||+++|.|+|+++|. ++++|||++|||++.++ +++|++|+++++|+++||.||+
T Consensus 396 ~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~ 469 (590)
T 1v5e_A 396 RHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTE 469 (590)
T ss_dssp GTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSS
T ss_pred HhcccCCCCeEEcCCCCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCc
Confidence 5666677765555567899999999999999984 68899999999998775 4779999999999888888775
Q ss_pred Ccceeecccc---------CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 82 YGMGTSAERS---------SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 82 ~~~~~~~~~~---------~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
|++....... ...+||.++ ++|+++++|+ +++++.+++++|++..+. ++|+|||+.|++.
T Consensus 470 ~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~ 540 (590)
T 1v5e_A 470 YAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQD 540 (590)
T ss_dssp CTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSC
T ss_pred hHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 8886532211 234788887 5799999997 578899999988876554 7899999999864
No 25
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.68 E-value=3.6e-17 Score=170.51 Aligned_cols=135 Identities=24% Similarity=0.210 Sum_probs=107.9
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|.|+|+++|. ++++|||++|||++.++ +++|++|+++++|+++||.||+
T Consensus 425 ~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~ 498 (616)
T 2pan_A 425 QMLHVFKDRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAY 498 (616)
T ss_dssp HHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred HhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCc
Confidence 3466677877777788899999999999999984 68999999999998775 4679999999999988888886
Q ss_pred Ccceeecc--------------c--cCC----CccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 82 YGMGTSAE--------------R--SSA----STDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 82 ~~~~~~~~--------------~--~~~----~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
|++..... . ... .+||.++ ++|+++++|+ +++++.+++++|++++++.++|+|||+
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev 576 (616)
T 2pan_A 499 LGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEV 576 (616)
T ss_dssp CHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred chHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEE
Confidence 87743210 0 011 2688876 5799999997 467888999998887766789999999
Q ss_pred EeeeeC
Q psy14560 140 VTYRYS 145 (355)
Q Consensus 140 ~t~R~~ 145 (355)
.|+|..
T Consensus 577 ~~~~~~ 582 (616)
T 2pan_A 577 ILERVT 582 (616)
T ss_dssp EBCSCC
T ss_pred Eecccc
Confidence 998654
No 26
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.65 E-value=1.2e-16 Score=165.16 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=101.1
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+.+...++.|+||+++|.|+|+++|. ++++|||++|||++.++ +++|++|+++++|+++||.||+
T Consensus 403 ~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~ 476 (566)
T 1ozh_A 403 RYLYTFRARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNG 476 (566)
T ss_dssp HTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSB
T ss_pred HhcccCCCCeEEeCCCcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCc
Confidence 3555666766666777899999999999999984 68999999999998774 4569999999999998888886
Q ss_pred Ccceeecc---------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAE---------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~---------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++..... .....+||.++ ++|+++++|++ ++++.+++++|+ +.++|+|||+.|+|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~gp~liev~~~~ 543 (566)
T 1ozh_A 477 YNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVES--AEALEPTLRAAM----DVDGPAVVAIPVDY 543 (566)
T ss_dssp CHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCS--GGGHHHHHHHHH----HSSSCEEEEEEBCC
T ss_pred hhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 88754321 22334788886 57999999984 566666666654 46899999999975
No 27
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.65 E-value=9e-17 Score=158.18 Aligned_cols=74 Identities=53% Similarity=0.925 Sum_probs=70.3
Q ss_pred cccccceeecccceecccCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHhhhhhccccccceeccCccccccc
Q psy14560 277 SYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFL 350 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~r~~~~~~~~~~~~~~~~g~~h~~~g~~~~~~ 350 (355)
+|+++++|++++||||+|+++|+....+|+|+++++||+|.++|+||+++.+||++|+|+||||+|.||||+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~v 77 (365)
T 2ozl_A 4 SFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV 77 (365)
T ss_dssp CCCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHH
T ss_pred ccccccccccCccccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999764
No 28
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.65 E-value=1.3e-16 Score=164.57 Aligned_cols=129 Identities=20% Similarity=0.210 Sum_probs=101.5
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
++.+..|.++...++.|+||+++|.|+|+++|.| +++++|||++|||+++++ +++|++|+++++|+++||.||+ |
T Consensus 403 ~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~ 478 (563)
T 2uz1_A 403 VMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSW 478 (563)
T ss_dssp HHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBC
T ss_pred hccccCCCeEECCCCCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcc
Confidence 4566667666666678999999999999999975 578999999999998775 4579999999999888888775 8
Q ss_pred cceeecc-------cc----CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 83 GMGTSAE-------RS----SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 83 ~~~~~~~-------~~----~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
++..... .. ...+||.++ ++|+++++|+ +++++.+++++|+ +.++|+|||+.|+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~ 545 (563)
T 2uz1_A 479 GATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQAL----AHNRPACINVAVA 545 (563)
T ss_dssp HHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HSSSCEEEEEECC
T ss_pred hHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----HCCCCEEEEEEec
Confidence 8754321 11 134688886 5799999997 5777777776665 4689999999997
No 29
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.64 E-value=8.1e-17 Score=164.79 Aligned_cols=128 Identities=28% Similarity=0.421 Sum_probs=98.7
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|..+....+ |+||+++|.|+|+++|. ++++|||++|||++.++ +++|++|+++++|+++||.||+
T Consensus 385 ~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~ 457 (528)
T 1q6z_A 385 QRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGT 457 (528)
T ss_dssp HHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSB
T ss_pred HhccccCCCcEECCCC-ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCc
Confidence 3456666755555556 99999999999999984 67899999999998876 5789999999999999998886
Q ss_pred Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++..... .....+||.++ ++|+++++|++ .+++.++ ++++++.++|+|||+.|.+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~a----l~~a~~~~gp~liev~~~~ 525 (528)
T 1q6z_A 458 YGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADN--LEQLKGS----LQEALSAKGPVLIEVSTVS 525 (528)
T ss_dssp CHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESS--HHHHHHH----HHHHHTCSSCEEEEEEBCC
T ss_pred chHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHH----HHHHHHCCCcEEEEEEecC
Confidence 88754321 11134688886 46999999985 5555555 4455567899999999875
No 30
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.64 E-value=2.2e-16 Score=166.76 Aligned_cols=131 Identities=25% Similarity=0.262 Sum_probs=103.5
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|+|+|+++| .+++.|||++|||+++++ +++|++|+++++|+++||.||+
T Consensus 496 ~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA----~p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~ 569 (677)
T 1t9b_A 496 QHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVA----KPESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEE 569 (677)
T ss_dssp HHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHH----CTTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSS
T ss_pred HhcccCCCCeEEeCCCcchhhchHHHHHHHHHh----CCCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCC
Confidence 356677787877788889999999999999998 478999999999998764 3559999999999888888776
Q ss_pred Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560 82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS 145 (355)
Q Consensus 82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~ 145 (355)
|++..... .....+||.++ ++|+++++|+ +.+++.+++++|+ +.++|+|||+.|++..
T Consensus 570 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 570 QGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV----STKGPVLLEVEVDKKV 639 (677)
T ss_dssp CHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HCSSCEEEEEEBCSSC
T ss_pred chhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHH----HCCCcEEEEEEecCCc
Confidence 88754211 11235788887 5799999996 5777777766655 4689999999998653
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.64 E-value=1.8e-16 Score=163.87 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=101.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+++...+++|+||+++|.|+|+++|. ++++|||++|||++.++ +++|++|+++++|+++||.||+
T Consensus 419 ~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~ 492 (573)
T 2iht_A 419 LFARADQPFGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDT 492 (573)
T ss_dssp HHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSB
T ss_pred HhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCc
Confidence 3456666766666667899999999999999984 68899999999998775 4679999999999888888776
Q ss_pred Ccceeec---------c--ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSA---------E--RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~---------~--~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
|++.... . .....+||.++ ++|+++++|+ +.+++.+++++| ++.++|+|||+.|.|
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~ 561 (573)
T 2iht_A 493 NGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKG----AELGRPFLIEVPVNY 561 (573)
T ss_dssp CHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHH----HTSSSCEEEEEEBCC
T ss_pred chhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEECCC
Confidence 8875532 1 22334788886 5799999997 566766666555 457899999999986
No 32
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.64 E-value=1.1e-16 Score=164.99 Aligned_cols=134 Identities=16% Similarity=0.054 Sum_probs=101.6
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|+.+...+++|+||+++|.|+|+++|.+.++.+++|||++|||+++++ +++|++|+++++|+++||.||+
T Consensus 396 ~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~ 473 (563)
T 2vk8_A 396 NQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDG 473 (563)
T ss_dssp GGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSS
T ss_pred hhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCc
Confidence 3455555655555678899999999999999998877778999999999998764 4669999999999888888776
Q ss_pred Ccceeecc------ccCCCccHhhh--cCCcc---eEEEeCCCHHHHHHHHH-HHHHHHHcCCCCeEEEEEeee
Q psy14560 82 YGMGTSAE------RSSASTDYYTR--GDYIP---GIWVDGMDVLAVREASK-FAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 82 ~~~~~~~~------~~~~~~d~~~~--A~G~~---~~~VdG~D~~~v~~a~~-~Al~~ar~~~gP~lIev~t~R 143 (355)
|++..... .....+||.++ |+|++ +++|++ .+++.++++ ++++ ..++|+|||+.|++
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~--~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 474 YTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVAT--TGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEECB--HHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred chhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEecC--HHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 88754221 11234688876 57999 999984 667666655 4432 23479999999973
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.64 E-value=4.2e-16 Score=161.72 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=102.0
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...+++|+||+++|+|+|+++|. ++++|||++|||++.++ +++|++|+++++|+++||.||+
T Consensus 409 ~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~ 482 (590)
T 1ybh_A 409 QFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQH 482 (590)
T ss_dssp HSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSB
T ss_pred HhcccCCCCeEEeCCCcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCc
Confidence 4566777877777778899999999999999984 68899999999998765 4579999999999888888775
Q ss_pred Ccceeec----------cccC--------CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 82 YGMGTSA----------ERSS--------ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 82 ~~~~~~~----------~~~~--------~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
|++.... .... ..+||.++ ++|+++++|+ +++++.+++++|+ +.++|+|||+.|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~ 556 (590)
T 1ybh_A 483 LGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML----DTPGPYLLDVIC 556 (590)
T ss_dssp CHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH----HSSSCEEEEEEC
T ss_pred chHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEe
Confidence 8775321 0111 14688876 5799999997 5777766666655 468999999999
Q ss_pred eeeC
Q psy14560 142 YRYS 145 (355)
Q Consensus 142 ~R~~ 145 (355)
++..
T Consensus 557 ~~~~ 560 (590)
T 1ybh_A 557 PHQE 560 (590)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8654
No 34
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.63 E-value=1.6e-16 Score=164.91 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=102.3
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
++++...|.++....+.|+||+++|.|+|+++|. ++++|||++|||++.++ +++|++|+++++|+++||.||+
T Consensus 407 ~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~ 480 (589)
T 2pgn_A 407 GGAILQRPRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNES 480 (589)
T ss_dssp HHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred HhcccCCCCcEECCCCcchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCC
Confidence 3556667766665667899999999999999984 68899999999998775 4789999999999888888887
Q ss_pred Ccceeecc---------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560 82 YGMGTSAE---------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS 145 (355)
Q Consensus 82 ~~~~~~~~---------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~ 145 (355)
|++..... .....+||.++ ++|+++++|++ .+++.+++++|++ .++|+|||+.|++..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~gp~liev~~~~~~ 549 (589)
T 2pgn_A 481 YGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRE--TGDIAGALQRAID----SGKPALIEIPVSKTQ 549 (589)
T ss_dssp CHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTT--TCCHHHHHHHHHH----HCSCEEEEEECCSSS
T ss_pred cccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 88754321 22335788887 46999999985 4466666666653 578999999998654
No 35
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.63 E-value=4.4e-16 Score=160.24 Aligned_cols=130 Identities=20% Similarity=0.178 Sum_probs=98.2
Q ss_pred ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560 3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG- 81 (355)
Q Consensus 3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~- 81 (355)
+++++..|+.+...++.|+||+++|.|+|+++| .|+++||+++|||++.++ .++|++|+++++|+++||.||+
T Consensus 389 ~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala----~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~ 462 (549)
T 3eya_A 389 RYLKMNGKRRLLGSFNHGSMANAMPQALGAQAT----EPERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSV 462 (549)
T ss_dssp HHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHH----STTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred HhCccCCCCcEEeCCCCchhhhHHHHHHHHHHh----CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCc
Confidence 345666676655567889999999999999998 468999999999998664 4569999999999888888776
Q ss_pred Ccceeecc---------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 82 YGMGTSAE---------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 82 ~~~~~~~~---------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
|++..... .....+||.++ ++|+++++|+ +++++.+++++| ++.++|+|||+.+.+.
T Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~~ 530 (549)
T 3eya_A 463 LGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRA----FSIDGPVLVDVVVAKE 530 (549)
T ss_dssp CCCC------------CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHH----HHSSSCEEEEEEBCCC
T ss_pred cHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeccc
Confidence 87643211 11234688886 5799999997 455666666555 4568999999999764
No 36
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.63 E-value=4.6e-16 Score=160.69 Aligned_cols=129 Identities=15% Similarity=0.046 Sum_probs=98.0
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
++++..|+.+...+++|+||+++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++||.||+ |
T Consensus 409 ~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~ 482 (570)
T 2vbf_A 409 TIFLKSNSRFIGQPLWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGY 482 (570)
T ss_dssp TSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSC
T ss_pred hcccCCCCeEecCccchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCch
Confidence 344555655555678899999999999999984 68999999999998774 4569999999999888887775 8
Q ss_pred cceeecc------ccCCCccHhhh--cCCcc-----eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 83 GMGTSAE------RSSASTDYYTR--GDYIP-----GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 83 ~~~~~~~------~~~~~~d~~~~--A~G~~-----~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
++..... .....+||.++ ++|++ +++|+ +.+++.++++++ +++.++|+|||+.|++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a---~~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 483 TVEREIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEA---QADVNRMYWIELVLEK 551 (570)
T ss_dssp HHHHHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred HHHHHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence 8754321 11234688886 57998 88997 467776666653 3467899999999974
No 37
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.61 E-value=5.1e-16 Score=159.57 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=97.7
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
++++..|..+...++.|+||+++|.|+|+++|. ++++|||++|||++.++ +++|.+|+++++|+++||.||+ |
T Consensus 392 ~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~ 465 (552)
T 1ovm_A 392 DLRLPADVNFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGY 465 (552)
T ss_dssp TCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSC
T ss_pred hcccCCCCeEEechhhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCC
Confidence 455555655555677899999999999999984 68899999999998764 4669999999999888888776 8
Q ss_pred cceeecc------ccCCCccHhhh--cCCc----ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 83 GMGTSAE------RSSASTDYYTR--GDYI----PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 83 ~~~~~~~------~~~~~~d~~~~--A~G~----~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
++..... .....+||.++ ++|+ ++++|+ +.+++.+++++ +++.++|+|||+.|++
T Consensus 466 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~----a~~~~gp~liev~~~~ 532 (552)
T 1ovm_A 466 TVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEK----VAHHERLSLIEVMLPK 532 (552)
T ss_dssp HHHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHH----HTTCSSEEEEEEECCT
T ss_pred eEEEeeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHH----HHhCCCCEEEEEEcCc
Confidence 8753221 12234688887 4699 899997 46666555554 5567899999999974
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.60 E-value=6.9e-16 Score=159.27 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=97.0
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
+++...|..+...++.|+||+++|.|+|+++| .++++|||++|||+++++ +++|++|+++++|+++||.||+ |
T Consensus 393 ~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala----~~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~ 466 (566)
T 2vbi_A 393 RMTLPRGARVELEMQWGHIGWSVPSAFGNAMG----SQDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGY 466 (566)
T ss_dssp TCCCCTTCEEECCTTTCCTTTHHHHHHHHHHT----CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSC
T ss_pred heECCCCCEEEecCcccchhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcc
Confidence 34444454444456789999999999999998 368999999999998764 4569999999999888887775 8
Q ss_pred cceeeccc----cCCCccHhhh--cCCc-----ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEeee
Q psy14560 83 GMGTSAER----SSASTDYYTR--GDYI-----PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTYR 143 (355)
Q Consensus 83 ~~~~~~~~----~~~~~d~~~~--A~G~-----~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~R 143 (355)
++...... ....+||.++ ++|+ ++++|+ +.+++.+++++|+ +. ++|+|||+.|++
T Consensus 467 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~----~~~~gp~liev~~~~ 533 (566)
T 2vbi_A 467 VIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAK----ANTRGPTLIECQIDR 533 (566)
T ss_dssp HHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred eEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHH----hcCCCcEEEEEEeCc
Confidence 87654321 2234688876 4689 999997 5777777666654 44 899999999974
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.59 E-value=1.2e-15 Score=157.47 Aligned_cols=129 Identities=22% Similarity=0.168 Sum_probs=97.4
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
+++...|..+...++.|+||+++|.|+|+++|. ++++||+++|||++.+. +++|++|+++++|+++||.||+ |
T Consensus 397 ~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~ 470 (568)
T 2wvg_A 397 RMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGY 470 (568)
T ss_dssp TCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSC
T ss_pred hcccCCCCeEEeCCCcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcc
Confidence 344444545544567899999999999999984 68999999999998763 4569999999999888877765 8
Q ss_pred cceeeccc----cCCCccHhhh--cCCc---------ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 83 GMGTSAER----SSASTDYYTR--GDYI---------PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 83 ~~~~~~~~----~~~~~d~~~~--A~G~---------~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
++...... ....+||.++ ++|+ ++++|+ +.+++.+++++|++. .++|+|||+.|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 471 TIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp HHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred eEeeeeccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 87654321 2234688886 4688 899997 567777777766532 2799999999974
No 40
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.57 E-value=5e-15 Score=152.85 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=100.1
Q ss_pred cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560 4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y 82 (355)
Q Consensus 4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~ 82 (355)
+++...|+.....+++|+||+++|.|+|++++ ++++||+++|||++.+. .++|++|+++++|+++||.||+ |
T Consensus 410 ~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~ 482 (568)
T 2c31_A 410 IVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGI 482 (568)
T ss_dssp HCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBS
T ss_pred HhcccCCCeEEcCCCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchh
Confidence 35566787777788889999999999999998 57899999999998663 3569999999999999999997 3
Q ss_pred -cceeec---cc----cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 83 -GMGTSA---ER----SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 83 -~~~~~~---~~----~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
.+.... .. ....+||.++ ++|+++++|+ +++++.+++++|++ .++|+|||+.++|.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 483 YKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp SCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred HHHHHHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 332111 00 0345688887 5799999997 57788777777663 57899999999854
No 41
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.57 E-value=4.2e-15 Score=153.21 Aligned_cols=127 Identities=18% Similarity=0.166 Sum_probs=98.8
Q ss_pred ccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C-
Q psy14560 5 MIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y- 82 (355)
Q Consensus 5 ~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~- 82 (355)
+....|+.....+++|+||+++|.|+|++++ ++++|||++|||++++. .++|.+|+++++|+++||.||+ |
T Consensus 406 ~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~ 478 (564)
T 2q28_A 406 IDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIY 478 (564)
T ss_dssp SCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSS
T ss_pred hcccCCCeEecCCCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhH
Confidence 4566777776678889999999999999997 58899999999998664 3559999999999999999987 4
Q ss_pred cceeec---cc------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 83 GMGTSA---ER------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 83 ~~~~~~---~~------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
++.... .. ....+||.++ ++|+++++|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 545 (564)
T 2q28_A 479 RGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPA 545 (564)
T ss_dssp CSCCCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred HHHHHHHhccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 442211 00 1124688887 4699999997 57788777777663 57899999999854
No 42
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.56 E-value=3.5e-15 Score=154.13 Aligned_cols=123 Identities=20% Similarity=0.178 Sum_probs=95.6
Q ss_pred CCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceee
Q psy14560 9 NPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTS 87 (355)
Q Consensus 9 ~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~ 87 (355)
.|+.+...+++|+||+++|.|+|+++|. ++++|||++|||++.+ .+++|++|+++++|+++||.||+ |++...
T Consensus 411 ~~~~~~~~~~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~ 484 (565)
T 2nxw_A 411 IDAGLMAPGYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRT 484 (565)
T ss_dssp CCSCEECCTTTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCcEEEccCccccccccchHHHHHHHhC----CCCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence 5555555667899999999999999994 6889999999999874 35669999999999888888776 887533
Q ss_pred cc-----ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCe-EEEEEeee
Q psy14560 88 AE-----RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPL-VLEVVTYR 143 (355)
Q Consensus 88 ~~-----~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~-lIev~t~R 143 (355)
.. .....+||.++ ++|+++++|+ +.+++.+++++|+ +.++|+ |||+.|++
T Consensus 485 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~~liev~~~~ 542 (565)
T 2nxw_A 485 FQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAF----ATRGRFQLIEAMIPR 542 (565)
T ss_dssp HCTTCGGGBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred ecccCCCCcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHH----hcCCCeEEEEEEccc
Confidence 21 12245788887 4799999998 4677776666655 457898 99999974
No 43
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.50 E-value=4.4e-15 Score=154.49 Aligned_cols=121 Identities=17% Similarity=0.051 Sum_probs=90.7
Q ss_pred CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec
Q psy14560 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA 88 (355)
Q Consensus 10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~ 88 (355)
|.++....+.+.||+++|.|+|+++|. +++|||++|||++.++ + ++|++|+++++|+++||.||+ |++....
T Consensus 445 ~~~~~~~~G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lp~~ivv~NN~~~~i~~~~ 517 (604)
T 2x7j_A 445 PFRIYSNRGANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-L-NGLLAAKKLGIPLTVILVNNDGGGIFSFL 517 (604)
T ss_dssp CCEEECCTTTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-G-GGGHHHHHHCCCEEEEEEECSSCGGGGGS
T ss_pred CceEEeCCCcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-H-HHHHHhhhcCCCeEEEEEeCCCCcccccC
Confidence 544444556688999999999999983 6889999999998775 3 459999999999888888775 8874321
Q ss_pred c------------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 89 E------------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 89 ~------------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
. .....+||.++ ++|+++++|+ +++++.+++++ +++.++|+|||+.+++
T Consensus 518 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~----a~~~~gp~liev~~~~ 580 (604)
T 2x7j_A 518 PQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAP----QADKPGLHLIEIKTDR 580 (604)
T ss_dssp GGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCC----CCSSCCEEEEEEECCH
T ss_pred CCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHH----HHhCCCCEEEEEECCc
Confidence 1 01134688886 5799999997 46666555544 4457899999999864
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.48 E-value=1.9e-14 Score=148.34 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=82.8
Q ss_pred cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec-------
Q psy14560 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA------- 88 (355)
Q Consensus 17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~------- 88 (355)
+++|++|+ +|.|+|+++| ++++|||++|||++.+. ..+|++|+++++|+++||.||+ |++....
T Consensus 414 g~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 485 (556)
T 3hww_A 414 GASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER 485 (556)
T ss_dssp SSCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred cccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence 45677788 9999999998 37899999999997654 2349999999999999999998 5653221
Q ss_pred c---ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560 89 E---RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR 143 (355)
Q Consensus 89 ~---~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R 143 (355)
. .....+||.++ ++|+++++|++ .+++.++ ++++++.++|+|||+.+++
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~a----l~~a~~~~gp~liev~~~~ 539 (556)
T 3hww_A 486 ERFYLMPQNVHFEHAAAMFELKYHRPQN--WQELETA----FADAWRTPTTTVIEMVVND 539 (556)
T ss_dssp ---CCCCCCCCSHHHHHHTTCEEECCSS--HHHHHHH----HHHHTTSSSEEEEEEECCS
T ss_pred HHhccCCCCCCHHHHHHHcCCcEEecCC--HHHHHHH----HHHHHhCCCCEEEEEECCc
Confidence 1 11235788887 57999999974 5565554 4555667899999999864
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.39 E-value=1.3e-13 Score=142.66 Aligned_cols=109 Identities=23% Similarity=0.129 Sum_probs=74.5
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec---c--c-----
Q psy14560 22 VGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA---E--R----- 90 (355)
Q Consensus 22 lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~---~--~----- 90 (355)
+|+++|.|+|+++ ++++|||++|||++.+. .++|++|+++++|+++||.||+ |++.... . .
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 3447999999863 48899999999998654 3459999999999999999886 7775421 0 0
Q ss_pred --cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 91 --SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 91 --~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
....+||.++ |+|+++++|+ +.+++.+++++ +++.++|+|||+.+.+.
T Consensus 510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~----a~~~~gp~liev~~~~~ 561 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDK----ASYHKGLDIIEVKTNRH 561 (578)
T ss_dssp -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHH----HTTSSSEEEEEEC----
T ss_pred ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHH----HHhCCCCEEEEEECCcc
Confidence 0124688886 5799999997 56666555554 55678999999998753
No 46
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.27 E-value=1.6e-12 Score=129.57 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=94.1
Q ss_pred cee--cchhHHHHHHHH---hhh---hhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560 155 SFR--DPITSFKEKMLN---SEL---ATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG 226 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~Gl---~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g 226 (355)
.|| -.+|.|++++.+ +|. +....+||+.+++...++++.||++++||+|+..+++|.++.++|++++|+..|
T Consensus 79 ~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~~~i~~el~g~~~~ 158 (407)
T 1qs0_A 79 GMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERD 158 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCHHHHHHHHhCCCCC
Confidence 466 456899998765 332 346788999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560 227 CAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS 274 (355)
Q Consensus 227 ~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~ 274 (355)
.++ |+|+++|+.. .+|++.++++|.++|+|+.-.+|
T Consensus 159 ~~~------------G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A 196 (407)
T 1qs0_A 159 PLK------------GRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMA 196 (407)
T ss_dssp TTT------------TCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHH
T ss_pred CCC------------CCCceeecchhccCccccccccccchhHHHHHHHH
Confidence 765 9999999875 69999999999999999887555
No 47
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.27 E-value=5.8e-12 Score=134.62 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=109.0
Q ss_pred CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccH---HHHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQ---NFEAYNIAKLWGIP-CIYVCENNGYGMG 85 (355)
Q Consensus 10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~---~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~ 85 (355)
|...++....|+||++++.|+|+|+. +++..|+|++|||...+|. .||+..++..+++. ++.|+.+|++.++
T Consensus 165 ~~tpGve~~tG~LGqGls~AvG~A~~----~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~ 240 (845)
T 3ahc_A 165 PETPGSIHEGGELGYALSHAYGAVMN----NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIA 240 (845)
T ss_dssp TTSTTCSCCCSSTTCHHHHHHHHHTT----CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSS
T ss_pred CCCCCeecCCCCccchHhHHhhhhhc----CCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCC
Confidence 45567788899999999999999954 6889999999999999999 99988888888998 8888889999998
Q ss_pred eecccc-CCCccHhhh--cCCcceE-EEeC-C--CHHHHHHHHHHHHHH-----------HHc--CCCC--eEEEEEeee
Q psy14560 86 TSAERS-SASTDYYTR--GDYIPGI-WVDG-M--DVLAVREASKFAVNY-----------ASS--GKGP--LVLEVVTYR 143 (355)
Q Consensus 86 ~~~~~~-~~~~d~~~~--A~G~~~~-~VdG-~--D~~~v~~a~~~Al~~-----------ar~--~~gP--~lIev~t~R 143 (355)
.++... .+..++.++ |+||..+ .||| + |++++.+++.+|++. +++ .++| .+|.++|..
T Consensus 241 g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~k 320 (845)
T 3ahc_A 241 NPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPK 320 (845)
T ss_dssp SBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCT
T ss_pred CCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcc
Confidence 766532 234566664 8999998 9999 8 999999888766633 444 3689 999999987
Q ss_pred eC
Q psy14560 144 YS 145 (355)
Q Consensus 144 ~~ 145 (355)
.+
T Consensus 321 G~ 322 (845)
T 3ahc_A 321 GW 322 (845)
T ss_dssp TT
T ss_pred cC
Confidence 76
No 48
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.21 E-value=6.2e-12 Score=125.11 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=94.8
Q ss_pred cee--cchhHHHHHHHH---hhh---hhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560 155 SFR--DPITSFKEKMLN---SEL---ATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG 226 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~Gl---~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g 226 (355)
.|| -.+|.|++++.+ +|. +....+||+.+++...++++.||++++||+|++.+++|.++.++|++++|+.+|
T Consensus 60 ~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g 139 (400)
T 2bfd_A 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 139 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCC
Confidence 466 456889998765 332 356789999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560 227 CAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 227 ~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
+++ |+++++|+.. .++++.++++|.++|+|+.-.+|.
T Consensus 140 ~~~------------G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~ 178 (400)
T 2bfd_A 140 LGK------------GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAA 178 (400)
T ss_dssp TTT------------TCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHH
T ss_pred CCC------------CCCCCcCCcccccCccccCccccccccHHHHHHHhh
Confidence 876 9999999875 689999999999999999875554
No 49
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.92 E-value=2.4e-09 Score=119.41 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=71.9
Q ss_pred CCeEEEEeCcc-cccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc----------------cCCCccHhhh--c
Q psy14560 42 GGVCFALYGDG-ASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER----------------SSASTDYYTR--G 101 (355)
Q Consensus 42 ~~~vv~~~GDG-a~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~----------------~~~~~d~~~~--A 101 (355)
++.||++.||| ++.+|. ..|.+|+++++||++||.||+ |++...+.. ....+||.++ |
T Consensus 953 ~~~Vv~i~GDG~~~~mg~--~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcch--HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 48899999999 666653 249999999999999999998 666431110 0123688886 5
Q ss_pred CCcceEEE-eC-CCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560 102 DYIPGIWV-DG-MDVLAVREASKFAVNYASSGKGPLVLEVVTYRY 144 (355)
Q Consensus 102 ~G~~~~~V-dG-~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~ 144 (355)
+|++++++ .- .++.++.+++++|++ .+||+||++.+.-.
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecCc
Confidence 79999854 33 488888888887764 58999999987543
No 50
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=98.87 E-value=9.7e-10 Score=108.15 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=85.7
Q ss_pred cee--cchhHHHHHHHH---hh---hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560 155 SFR--DPITSFKEKMLN---SE---LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG 226 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~---~G---l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g 226 (355)
.|| -.+|.|++++.+ +| .+....+||+.+++...+++++||++++||+|++.+++|.++..+|++++|+.+|
T Consensus 49 ~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~~~~~~el~G~~~G 128 (368)
T 1w85_A 49 LMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHG 128 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCHHHHHHHHCCCCCC
Confidence 355 345888887644 33 4556889999999999999999999999999999999999999999999997653
Q ss_pred CCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhhhhcc
Q psy14560 227 CAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 227 ~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
|+|| ...+++++++++|.++|.|+.-.+|.
T Consensus 129 ------------------~~~h-~~~~~~~~~g~lG~~lp~AvG~A~A~ 158 (368)
T 1w85_A 129 ------------------NQIP-EGVNVLPPQIIIGAQYIQAAGVALGL 158 (368)
T ss_dssp ------------------GCCC-TTCCBCCCCCSTTHHHHHHHHHHHHH
T ss_pred ------------------CCCC-cccccCCCccccCccccHHHHHHHHh
Confidence 4577 46799999999999999999875554
No 51
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=98.81 E-value=3.6e-09 Score=103.96 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=90.2
Q ss_pred cchhHHHHHHHH---hh---hhhhhhHHHHHHhhHHHhhccc-cccccccccccceeecCCCHHHHHHHHhcccccCCCC
Q psy14560 158 DPITSFKEKMLN---SE---LATVDELKEACAVGMRAVMREQ-DSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKG 230 (355)
Q Consensus 158 DpIr~fee~Li~---~G---l~t~~e~qEa~qvg~~~al~~~-D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~ 230 (355)
..+|.|+.++.. +| .+....++|+...+...+++++ |+++++||+|++.+.+|.++.++|.+++|+.+|+++
T Consensus 46 ~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~- 124 (367)
T 1umd_A 46 LAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNK- 124 (367)
T ss_dssp HHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTT-
T ss_pred HHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCC-
Confidence 456888887765 22 2344578999999999999998 999999999999999999999999999999999876
Q ss_pred CCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560 231 KGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS 274 (355)
Q Consensus 231 ~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~ 274 (355)
|+++++|+.+ .++++.++++|+++|.|+.-.++
T Consensus 125 -----------G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a 159 (367)
T 1umd_A 125 -----------GRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159 (367)
T ss_dssp -----------TCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHH
T ss_pred -----------CCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHH
Confidence 9999999874 68999999999999999876444
No 52
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=98.35 E-value=9.8e-08 Score=103.08 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=77.7
Q ss_pred cee--cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHhhc------ccccccc-ccccccceee--cCCCHHHHHHHH
Q psy14560 155 SFR--DPITSFKEKMLNS---ELATVDELKEACAVGMRAVMR------EQDSIIS-AYRVHGWTYL--MGVSVFGVLSEL 220 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~al~------~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~ 220 (355)
.|+ -.+|.||++|.+. +-.-..++||+.+.+...+++ .+|++++ +||+|+..++ +|+++.++|+|+
T Consensus 123 ~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~ 202 (868)
T 2yic_A 123 ILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEF 202 (868)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHh
Confidence 455 4568999987762 222334789999999887765 6899998 8999999999 999999999999
Q ss_pred hcccccC-CCCCCCCCcccccCCCCccccCCc--------------ccccccccccCCchhhhhhhhhcc
Q psy14560 221 TGRRTGC-AKGKGPISWECCAKGKGGSMHMYA--------------KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 221 ~g~~~g~-~~~~~~~~w~~~~~G~gg~~h~~~--------------~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
+|+.+|+ ++ +|++.++|+.. .++.+.++++|+|+|+|+....|.
T Consensus 203 ~G~~~g~~~~-----------g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~ 261 (868)
T 2yic_A 203 EGNLNPSQAH-----------GSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAK 261 (868)
T ss_dssp C-----------------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHH
T ss_pred cCCCCCCccC-----------CCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHH
Confidence 9998886 44 25566888764 134556789999999998875554
No 53
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=98.34 E-value=1.9e-07 Score=101.50 Aligned_cols=110 Identities=9% Similarity=0.010 Sum_probs=82.1
Q ss_pred cee--cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHhhc------ccccccc-ccccccceee--cCCCHHHHHHHH
Q psy14560 155 SFR--DPITSFKEKMLNS---ELATVDELKEACAVGMRAVMR------EQDSIIS-AYRVHGWTYL--MGVSVFGVLSEL 220 (355)
Q Consensus 155 ~YR--DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~al~------~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~ 220 (355)
.|+ -.+|.||++|.+. |-.-..+++|+...+...+++ .+||+++ +||+|+..++ +|.++..+|+|+
T Consensus 203 ~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~ 282 (933)
T 2jgd_A 203 FLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEF 282 (933)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHh
Confidence 355 4568999988762 211234688998888777665 5899996 8999999999 999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCccccCCcc------------cccccccccCCchhhhhhhhhccc
Q psy14560 221 TGRRTGCAKGKGPISWECCAKGKGGSMHMYAK------------NFYGGNGIVGAQTLKSLLKSISGR 276 (355)
Q Consensus 221 ~g~~~g~~~~~~~~~w~~~~~G~gg~~h~~~~------------~~~~~~~~vg~~~~~a~~~~~~~~ 276 (355)
+|+.+|+++ |++.++|+... ++.+.++++|+++|+|+....|.+
T Consensus 283 ~G~~~g~~g------------~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~ 338 (933)
T 2jgd_A 283 AGKHKEHLG------------TGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARL 338 (933)
T ss_dssp HTCC--CCS------------CCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCCC------------CCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHH
Confidence 999887653 55666776531 345778999999999998866643
No 54
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=98.25 E-value=2.1e-07 Score=102.89 Aligned_cols=107 Identities=15% Similarity=0.043 Sum_probs=74.7
Q ss_pred cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHhhc------ccccccc-ccccccceee--cCCCHHHHHHHHhcccc
Q psy14560 158 DPITSFKEKMLNS---ELATVDELKEACAVGMRAVMR------EQDSIIS-AYRVHGWTYL--MGVSVFGVLSELTGRRT 225 (355)
Q Consensus 158 DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~al~------~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~~g~~~ 225 (355)
-.+|.||++|.+. +-.-.-++||+.+.+...+++ .+|++++ +||+|+..++ +|+++.++|+|++|+.+
T Consensus 373 ~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~ 452 (1113)
T 2xt6_A 373 NAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLN 452 (1113)
T ss_dssp HHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-----
T ss_pred HHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCC
Confidence 4458898887662 112234789999999887765 6899998 8999999999 99999999999999998
Q ss_pred cC-CCCCCCCCcccccCCCCccccCCc--------------ccccccccccCCchhhhhhhhhcc
Q psy14560 226 GC-AKGKGPISWECCAKGKGGSMHMYA--------------KNFYGGNGIVGAQTLKSLLKSISG 275 (355)
Q Consensus 226 g~-~~~~~~~~w~~~~~G~gg~~h~~~--------------~~~~~~~~~vg~~~~~a~~~~~~~ 275 (355)
|+ ++ +|++.++|+.. .++.+.++++|+|+|+|+....|.
T Consensus 453 g~~~~-----------g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~ 506 (1113)
T 2xt6_A 453 PSQAH-----------GSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAK 506 (1113)
T ss_dssp -------------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHH
T ss_pred CCccC-----------CCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHH
Confidence 87 44 25566888764 134556789999999999875554
No 55
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.67 E-value=1.6 Score=44.60 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec-cccCCCccHhhhcCCc--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA-ERSSASTDYYTRGDYI-- 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~-~~~~~~~d~~~~A~G~-- 104 (355)
+|.|.|.+. +.-..+++..|=|+++. .-++..|-.-++|+|+|.-+-........ ..+ ..|... ...+
T Consensus 58 ~A~GyAr~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~tk 128 (589)
T 2pgn_A 58 MVNGYNYVK---DRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPIAR 128 (589)
T ss_dssp HHHHHHHHH---TSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTTSS
T ss_pred HHHHHHHHH---CCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccccEE
Confidence 466666553 33456777778888664 33577788899999999987653221111 111 123333 2222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
...++ .+++++.+.+++|+..+..++ ||+.|++..+
T Consensus 129 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 129 STQRV--ERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred EEeec--CCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 23445 467788899999999888776 9999999764
No 56
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=90.61 E-value=0.92 Score=46.39 Aligned_cols=105 Identities=25% Similarity=0.279 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|.|.|.+. +.-..+++..|=|+++. .-++..|-..++|+|+|.-+-......... ....|....... -.
T Consensus 65 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~g~~~--~Q~~d~~~~~~~~~k~ 136 (590)
T 1ybh_A 65 AAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIVEVTRSITKH 136 (590)
T ss_dssp HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTC--TTCCCHHHHHGGGSSE
T ss_pred HHHHHHHHH---CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCccccCCCc--ccccCHHHHHHHHhCe
Confidence 456666553 22334455556666543 345777888999999998875432211111 111233333211 12
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..++ .+++++.+++++|++.++.++ ||+.|++..+
T Consensus 137 ~~~v--~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 137 NYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp EEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred EEec--CCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 3444 467789999999999888764 8999999764
No 57
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=90.48 E-value=1.1 Score=45.41 Aligned_cols=106 Identities=18% Similarity=0.131 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--Ccc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G~~ 105 (355)
+|.|.|.+. +.-..+++..|=|+.+. .-++..|-..++|+|+|.-+-..........+.. .|...... --.
T Consensus 56 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~-~d~~~~~~~~tk~ 128 (563)
T 2uz1_A 56 AAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAG-IDQVAMAAPITKW 128 (563)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCC-CCHHHHHGGGCSE
T ss_pred HHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhh-ccHHHHhhhhhce
Confidence 455665542 22233444445565543 3356778888999999988765322111111110 23433322 222
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..++. +++++.+.+++|+..+..++ ||+.|++..+
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 129 AHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp EEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred EEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 44553 67788899999999988865 9999999765
No 58
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=90.46 E-value=0.96 Score=46.06 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee-ccccCCCccHhhhcCCc--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS-AERSSASTDYYTRGDYI-- 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~-~~~~~~~~d~~~~A~G~-- 104 (355)
+|.|.|.+. +.-..+++..|=|+.+. .-++..|..-++|+|+|.-+-....... ...+ ..|.......+
T Consensus 63 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~~~k 134 (573)
T 2iht_A 63 AADVLARIT---GRPQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIFPNDTHQ--CLDSVAIVAPMSK 134 (573)
T ss_dssp HHHHHHHHH---CSCEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTT--CCCHHHHHGGGSS
T ss_pred HHHHHHHHH---CCCEEEEEccCchHHHH---HHHHHHHHhhCCCEEEEcccCcccccCCcCccc--cCCHHHHHHhHhh
Confidence 466666553 22233444445555442 3457778888999999998765332111 1111 12443332222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
...++. +++++.+.+++|++.+..++ ||+.|++..+
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 135 YAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 234553 67788899999999888875 9999999865
No 59
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=90.27 E-value=1.5 Score=44.31 Aligned_cols=105 Identities=13% Similarity=-0.012 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~ 105 (355)
+|.|.|.+. +.-..+++..|=|+++. .-++..|-.-++|+|+|.-+-........ ..-..|.......+ .
T Consensus 56 ~A~GyAr~t---g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~~--~~Q~~d~~~~~~~~tk~ 127 (549)
T 3eya_A 56 AAGAEAQLS---GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG--YFQETHPQELFRECSHY 127 (549)
T ss_dssp HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTSC--CTTCCCHHHHTSTTCSE
T ss_pred HHHHHHHHh---CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCCC--CCCccCHHHHHhhhhhe
Confidence 455555542 22334445556666654 24577888899999999876442111000 01112443332222 2
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
..++. +++++.+.+++|++.+...+||+.|++..+
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 128 CELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 34453 577788899999988888889999998753
No 60
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=90.23 E-value=1.1 Score=45.61 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--Ccc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G~~ 105 (355)
+|.|.|.+. +.-..+++..|=|+++. .-++..|-.-++|+|+|.-+-..........+ ..|...... --.
T Consensus 63 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk~ 134 (566)
T 1ozh_A 63 MAAAVGRIT---GKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTKY 134 (566)
T ss_dssp HHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSE
T ss_pred HHHHHHHHH---CCCEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhhe
Confidence 466666552 22233444446666553 34567777889999999887653221111111 123333322 223
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
..++. +++++.+.+++|+..+..++ ||+.|++...
T Consensus 135 ~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 135 AIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 44554 67788899999999888874 9999999764
No 61
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=89.49 E-value=0.38 Score=47.06 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=59.2
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cc--eeeccccCC-CccHhh
Q psy14560 24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GM--GTSAERSSA-STDYYT 99 (355)
Q Consensus 24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~--~~~~~~~~~-~~d~~~ 99 (355)
..+.+|+|++++ ..++++...|.|-... .+.|..++..++|+++++.+-.. +. ++....... ...+..
T Consensus 75 ~a~~~a~Gaa~a-----G~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~ 146 (395)
T 1yd7_A 75 ASIAAAIGASWA-----GAKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGT 146 (395)
T ss_dssp HHHHHHHHHHHT-----TCCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------------
T ss_pred HHHHHHHHHHHh-----CCcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhcc
Confidence 345556666665 3567778888887432 23455677889999988876542 21 221111000 001111
Q ss_pred hc-CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 100 RG-DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 100 ~A-~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
.+ .|++.+.. .++.+..+.+..|++.+.+.+.|+++....
T Consensus 147 ~g~~g~~vl~p--~~~qea~~l~~~A~~lA~~~~~PVi~~~~~ 187 (395)
T 1yd7_A 147 HGDHSLIVLSP--STVQEAFDFTIRAFNLSEKYRTPVILLTDA 187 (395)
T ss_dssp --CCCCEEECC--CSHHHHHHHHHHHHHHHHHHTSEEEEEECH
T ss_pred CCCcceEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEcch
Confidence 11 25665554 478899999999998888778999998765
No 62
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=89.12 E-value=1.8 Score=45.31 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|.|.|.+. +.-.++++..|=|+++. .-++..|-.-++|+|+|.-+-..........+ ..|....... -.
T Consensus 135 aAdGyAr~t---Gkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q--~~Dq~~i~~~~tk~ 206 (677)
T 1t9b_A 135 MAEGYARAS---GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQ--EADVVGISRSCTKW 206 (677)
T ss_dssp HHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTT--CCCHHHHTGGGSSE
T ss_pred HHHHHHHHH---CCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCCCCcc--ccCHHHHhhhheeE
Confidence 466666553 22334555556666543 33567777889999999887542221110011 1233332211 12
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEe
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVT 141 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t 141 (355)
..+|+ +++++.+.+++|++.+..+ .||+.|++..
T Consensus 207 ~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 207 NVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 34553 6778999999999988876 6899999984
No 63
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=88.55 E-value=2 Score=44.98 Aligned_cols=102 Identities=19% Similarity=0.173 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP 105 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~ 105 (355)
+++|.|+|+. +.-++++.++.+-+. ...+.+..++..++||+++....+++.........+..|++-+. .+|
T Consensus 416 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr-~iP 487 (663)
T 3kom_A 416 AAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLR-LIP 487 (663)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TST
T ss_pred HHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHh-cCC
Confidence 3456666654 456778887766552 23456777899999999999888766432222223334444332 344
Q ss_pred eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
.++| .=.|+.++..+++.|++ ..++|++|-
T Consensus 488 nl~V~~Pad~~e~~~~l~~A~~---~~~~Pv~ir 518 (663)
T 3kom_A 488 NLSVWRPADTIETMIAWKEAVK---SKDTPSVMV 518 (663)
T ss_dssp TCEEECCCSHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred CcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 4433 22467777777776663 257899984
No 64
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=88.33 E-value=1.5 Score=45.01 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc-ceeeccccCCCccHhhhcCC--c
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG-MGTSAERSSASTDYYTRGDY--I 104 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~A~G--~ 104 (355)
+|.|.|.+. +.-.++++..|=|+++. .-++..|-.-++|+|+|.-+-... +..... + ..|....... .
T Consensus 65 aA~GyAr~t---g~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~~~-Q--~~d~~~~~~~~tk 135 (603)
T 4feg_A 65 AAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTF-Q--EMNENPIYADVAD 135 (603)
T ss_dssp HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCT-T--CCCCGGGGTTTCS
T ss_pred HHHHHHHHh---CCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCCcc-c--cccHHHHhhhhce
Confidence 455555542 22234444556666654 235778888999999998764321 111100 1 1122222111 2
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
...+|. +++++.+.+++|++.+...+||+.|++..+
T Consensus 136 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 171 (603)
T 4feg_A 136 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPVD 171 (603)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEETT
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 234553 455677788888887777789999998753
No 65
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=87.53 E-value=1.7 Score=44.11 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee---ccccC--CC-ccHhhhc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS---AERSS--AS-TDYYTRG 101 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~---~~~~~--~~-~d~~~~A 101 (355)
+|.|.|.+. + -..+++..|=|+++ ..-++..|-..++|+|+|.-+-....... ..... .. .|.....
T Consensus 56 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~ 128 (568)
T 2wvg_A 56 SAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMA 128 (568)
T ss_dssp HHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHH
T ss_pred HHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHH
Confidence 466666553 3 23344444555544 34457778889999999998765322100 00000 01 1333332
Q ss_pred C--CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 102 D--YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 102 ~--G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
. --...++. +++++.+.+++|++.+..++||+.|++..+
T Consensus 129 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 129 KNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp TTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 2 22355664 566778888888888887789999999865
No 66
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=87.50 E-value=1.8 Score=43.92 Aligned_cols=107 Identities=20% Similarity=0.152 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc---ccCCCcc-Hhhhc--
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE---RSSASTD-YYTRG-- 101 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~---~~~~~~d-~~~~A-- 101 (355)
+|.|.|.+. +.-..+++..|=|+.+. .-++..|..-++|+|+|.-+-......... .+....| .....
T Consensus 74 ~A~GyAr~t---gkp~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~ 147 (565)
T 2nxw_A 74 AADAAARYS---STLGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKE 147 (565)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTT
T ss_pred HHHHHHHHh---CCCeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHh
Confidence 456666553 22233444446665543 345777888999999999875422211100 0000112 22221
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 102 DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 102 ~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.--...++. +++++.+.+++|++.+...+||+.|++..+
T Consensus 148 ~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 148 ITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp SCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred hheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 122345554 455667778888877776689999999854
No 67
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=86.74 E-value=2.6 Score=43.90 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
.+|.|+|+. +.-++++.++.+-+. ..++.+..++..++||+++....+.+.+.......+..|++-+. .+|+
T Consensus 396 ~~a~GlA~~----gG~~P~~~~f~~F~~---~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr-~iP~ 467 (632)
T 3l84_A 396 AINNAFARY----GIFLPFSATFFIFSE---YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFR-AMPN 467 (632)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHH-HSSS
T ss_pred HHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHh-cCCC
Confidence 446666654 345777777765442 23456777889999999999888866432222223334444321 2344
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
++| .=.|+.++..+++.|++ .++|++|-.
T Consensus 468 l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~ 497 (632)
T 3l84_A 468 FLTFRPADGVENVKAWQIALN----ADIPSAFVL 497 (632)
T ss_dssp CEEECCSSHHHHHHHHHHHHH----CSSCEEEEC
T ss_pred CEEEecCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 333 22467777777777764 678998843
No 68
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=86.57 E-value=1.6 Score=44.31 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|.|.|.+. +.-..+++..|=|+.+ ..-++..|-.-++|+|+|.-+-...........+...|....... -.
T Consensus 62 ~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 135 (568)
T 2c31_A 62 AASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA 135 (568)
T ss_dssp HHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE
T ss_pred HHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe
Confidence 355555542 2222344444555443 344577888899999999987552211100000111233332211 22
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEee
Q psy14560 106 GIWVDGMDVLAVREASKFAVNYASS-GKGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~ 142 (355)
..++. +++++.+.+++|++.+.. ..||+.|++..+
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 136 SFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred eeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 34553 567788899999998887 469999998754
No 69
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=86.40 E-value=3 Score=43.62 Aligned_cols=101 Identities=22% Similarity=0.175 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcC-CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560 28 LGTGIAFAAQYKG-TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 28 ~AiGaA~A~k~~~-~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
+|.|+|+ .+ .-++++.++.+.+. -.++++..++..++|+++++...+++.........+..|++-.. .+|.
T Consensus 429 ~a~GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr-~iP~ 500 (675)
T 1itz_A 429 ICNGIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFR-AMPN 500 (675)
T ss_dssp HHHHHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-SSSS
T ss_pred HHHHHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhc-cCCC
Confidence 4555554 34 35777777766553 24566888999999999999877766432222222334444332 3444
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
++| .=.|+.++..+++.|++. .++|++|-.
T Consensus 501 l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 531 (675)
T 1itz_A 501 ILMLRPADGNETAGAYKVAVLN---RKRPSILAL 531 (675)
T ss_dssp CEEECCCSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 433 235788887777777642 378999843
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=86.36 E-value=2.1 Score=42.98 Aligned_cols=107 Identities=19% Similarity=0.051 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI-- 104 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~-- 104 (355)
-+|.|.|.+. +.-..+++..|=|..+. .-++..|...++|+|+|.-+-..........+. ..|.......+
T Consensus 52 ~~A~Gyar~t---g~~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k 124 (528)
T 1q6z_A 52 GIADGYAQAS---RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVK 124 (528)
T ss_dssp HHHHHHHHHH---TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCS
T ss_pred HHHHHHHHHh---CCCEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhH
Confidence 3566666653 22233444456666543 345677888999999998875421110000111 01333322222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
...++ .+++++.+.+++|+..+..++ ||+.|++...
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 125 WSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp CEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred hhhcC--CCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 23344 356677888899998888764 7999999865
No 71
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=86.33 E-value=1.6 Score=44.29 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec---cccC--CC-ccHhhh
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA---ERSS--AS-TDYYTR 100 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~---~~~~--~~-~d~~~~ 100 (355)
-+|.|.|.+. + -..+++..|=|+.+ ..-++..|-..++|+|+|+-+-........ .... .. .|....
T Consensus 55 ~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 127 (566)
T 2vbi_A 55 FSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEM 127 (566)
T ss_dssp HHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHH
T ss_pred HHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHH
Confidence 3466666552 3 23333344555544 334577788899999999987653211000 0000 01 133332
Q ss_pred c--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 101 G--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 101 A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
. .--...++. +++++.+.+++|+..+...+||+.|++..+
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 169 (566)
T 2vbi_A 128 ARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIACN 169 (566)
T ss_dssp HHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 1 222345664 445667788888888877789999999764
No 72
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=86.14 E-value=1.6 Score=44.14 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--C
Q psy14560 28 LGTGIAFAAQYKGTGGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--Y 103 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G 103 (355)
+|.|.|.+. +++.+|+ .|=|+++ ..-++..|-.-++|+|+|.-+-...........+...|...... -
T Consensus 60 ~A~Gyar~t-----g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~t 131 (564)
T 2q28_A 60 AAAASGFLT-----QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYA 131 (564)
T ss_dssp HHHHHHHHH-----SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGS
T ss_pred HHHHHHHHh-----CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhh
Confidence 355555542 3444444 4555443 33457778889999999998755321110000011123322211 1
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEee
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASS-GKGPLVLEVVTY 142 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~ 142 (355)
-...+|. +++++.+.+++|++.+.. ..||+.|++..+
T Consensus 132 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 132 KAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred heeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 2244553 566788899999998887 469999998754
No 73
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=85.92 E-value=1.8 Score=44.80 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc-C-C
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG-D-Y 103 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A-~-G 103 (355)
+.+|.|+|++ .-++++.++++... . .+-..++.++..++|+++++.+-++. ...........|++-.. . |
T Consensus 374 ~~~a~G~A~~-----G~rp~~~~~~~F~~-~-a~dqi~~~~a~~~~pvv~~~~~~g~~-g~~G~tH~~~~d~~~~~~iP~ 445 (621)
T 2o1s_A 374 VTFAAGLAIG-----GYKPIVAIYSTFLQ-R-AYDQVLHDVAIQKLPVLFAIDRAGIV-GADGQTHQGAFDLSYLRCIPE 445 (621)
T ss_dssp HHHHHHHHHT-----TCEEEEEEETTGGG-G-GHHHHHHTTTTTTCCCEEEEESCBCC-CTTCGGGCBCSHHHHTTTSTT
T ss_pred HHHHHHHHHC-----CCEEEEEehHhHHH-H-HHHHHHHHHHhcCCCEEEEEECCccC-CCCCCccCchHHHHHHhcCCC
Confidence 3456676664 35788888888763 1 22233667788999999999765541 11111112223443332 2 5
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
+.++.- .|+.+...+++.|++. .++|++|-.
T Consensus 446 l~v~~P--~d~~e~~~~l~~a~~~---~~~Pv~i~~ 476 (621)
T 2o1s_A 446 MVIMTP--SDENECRQMLYTGYHY---NDGPSAVRY 476 (621)
T ss_dssp CEEECC--SSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CEEEec--CCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 554433 4788888888877752 378998854
No 74
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=85.70 E-value=3.6 Score=42.94 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
++|.|+|+. +.-+++++.+.+.+. -..+++..++..++|+++++.+.+++.........+..|++.+. .+|.
T Consensus 416 ~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr-~iP~ 487 (669)
T 2r8o_A 416 AIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLR-VTPN 487 (669)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TSTT
T ss_pred HHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhc-CCCC
Confidence 455566554 445677777766553 12455778899999999998888876432222222334444432 2344
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
++| .=.|+.++..+++.|++. .++|++|-
T Consensus 488 l~V~~Pad~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 488 MSTWRPCDQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp CEEECCSSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CEEEecCCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 333 234788887887777642 37899984
No 75
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=85.55 E-value=1.7 Score=44.47 Aligned_cols=105 Identities=13% Similarity=-0.044 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CCc
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DYI 104 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~ 104 (355)
-+|.|.|.+. +.-..+++..|=|.++. .-++..|-.-++|+|+|.-+-..........+ ..|..... .--
T Consensus 57 ~~A~GyAr~t---gk~~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q--~~d~~~~~~~~tk 128 (590)
T 1v5e_A 57 MAAVMQSKFG---GNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAV 128 (590)
T ss_dssp HHHHHHHHTT---CCCCEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCCHHHHHTTCS
T ss_pred HHHHHHHHHH---CCCEEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCCccc--ccCHHHHHHhhcc
Confidence 3455555441 22233444446666543 33566777889999999987653221111111 12332221 112
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY 142 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~ 142 (355)
...++ .+++++.+.+++|++.+..++ ||+.| +...
T Consensus 129 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~d 164 (590)
T 1v5e_A 129 YNRRV--AYAEQLPKLVDEAARMAIAKRGVAVLE-VPGD 164 (590)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEE-EETT
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhcCCCceEEE-Eccc
Confidence 24455 367788899999999998877 99999 7653
No 76
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=84.95 E-value=3.9 Score=42.53 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh-cC-Cc
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR-GD-YI 104 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~-A~-G~ 104 (355)
++|.|+|+. +.-++++..+.=.+. -.++++..++..++|+++++.+.+++.........+..|++.. +. |+
T Consensus 411 ~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l 483 (651)
T 2e6k_A 411 AILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNL 483 (651)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTC
T ss_pred HHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCc
Confidence 456676654 435777776643331 1345578889999999999988887654222222333454443 22 44
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
.++. =.|+.++..+++.|++. .++|++|-.
T Consensus 484 ~V~~--Pad~~E~~~~l~~A~~~---~~~Pv~i~~ 513 (651)
T 2e6k_A 484 FVIR--PADAYETFYAWLVALRR---KEGPTALVL 513 (651)
T ss_dssp EEEC--CSSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred EEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 4443 34788888888877752 368998854
No 77
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=84.46 E-value=2.1 Score=43.78 Aligned_cols=107 Identities=15% Similarity=0.010 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CCcc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DYIP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~ 105 (355)
+|.|.|.+. +.-.++++..|=|+++. .-++..|-.-++|+|+|.-+-..........+ ..|..... .--.
T Consensus 84 aA~GyAr~t---gkpgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~ 155 (604)
T 2x7j_A 84 FALGLAKAK---QRPVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVKF 155 (604)
T ss_dssp HHHHHHHHH---TSCEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSSC
T ss_pred HHHHHHHhh---CCCEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhheee
Confidence 455666552 22334444556666553 33577788889999999987543211110011 11222111 1113
Q ss_pred eEEEeCCCH-----HHHHHHHHHHHHHHHc-CCCCeEEEEEee
Q psy14560 106 GIWVDGMDV-----LAVREASKFAVNYASS-GKGPLVLEVVTY 142 (355)
Q Consensus 106 ~~~VdG~D~-----~~v~~a~~~Al~~ar~-~~gP~lIev~t~ 142 (355)
..+|...+. ..+.+.+++|+..+.. ..||+.|++..+
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 156 FTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 455543221 1277888999988887 469999999865
No 78
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=84.00 E-value=5.2 Score=42.20 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP 105 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~ 105 (355)
+.+|.|+|+. +.-++++.++.+=+ + .....+..++..++||+++....+.+.........+..|++-+. .+|
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~~F~--~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr-~iP 532 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFLTFS--D-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLR-LIP 532 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TST
T ss_pred HHHHHHHHHc----CCCEEEEEEhHHHH--H-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHh-cCC
Confidence 4456676653 24567777664432 2 23456777889999999999888765432222223334444332 344
Q ss_pred eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
+++| .=.|+.++..+++.|++ .++|++|-
T Consensus 533 nl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 533 NLDVWRPADTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TCEEECCSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCEEEecCCHHHHHHHHHHHHh----cCCCEEEE
Confidence 4433 22477777777777764 57899883
No 79
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=83.74 E-value=3.5 Score=43.20 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCCC-eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560 27 PLGTGIAFAAQYKGTGG-VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP 105 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~-~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~ 105 (355)
++|.|+|+. +.-+ +++..+.+-+. -.++++..++..++||++++...+++.........+..|++-+. .+|
T Consensus 423 g~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr-~iP 494 (680)
T 1gpu_A 423 AIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFR-SLP 494 (680)
T ss_dssp HHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TSS
T ss_pred HHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhc-CCC
Confidence 356666654 4346 77777655442 13456778899999999998877766432222222334444332 344
Q ss_pred eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
+++| .=.|+.++..+++.|++. .++|++|-
T Consensus 495 ~l~V~~Pad~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 495 NIQVWRPADGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SCEEECCCSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCEEEecCCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 4433 224777887777777642 37899984
No 80
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=83.66 E-value=4.9 Score=41.12 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCCCeE--EEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--
Q psy14560 28 LGTGIAFAAQYKGTGGVC--FALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY-- 103 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~v--v~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G-- 103 (355)
+|.|.|.+ ..+++. ++..|=|+++. .-++..|..-++|+|+|.-+-..........+ ..|.......
T Consensus 80 ~A~GyAr~----tgg~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~t 150 (616)
T 2pan_A 80 MAEGYTRA----TAGNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIEAIAKPVS 150 (616)
T ss_dssp HHHHHHHH----STTCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGS
T ss_pred HHHHHHHh----cCCCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHHHHHHHHH
Confidence 45555554 113444 44556666543 33577788889999999987653221111111 1233333221
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY 142 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~ 142 (355)
-...++ .++.++.+++++|++.+..+ .||+.|++..+
T Consensus 151 k~~~~v--~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 151 KMAVTV--REAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred Hhhccc--CCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 223455 35678889999999988876 58999999753
No 81
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=83.62 E-value=1.6 Score=45.17 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CC
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DY 103 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G 103 (355)
+.+|+|+|++ .-++++.++.+... -.+-..++.++..++|+++++.+-++. ...........|++-.. -|
T Consensus 377 ~~~a~G~A~~-----G~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~-g~dG~tH~~~~d~a~~r~iP~ 448 (629)
T 2o1x_A 377 VTTAAGMALQ-----GMRPVVAIYSTFLQ--RAYDQVLHDVAIEHLNVTFCIDRAGIV-GADGATHNGVFDLSFLRSIPG 448 (629)
T ss_dssp HHHHHHHHHT-----TCEEEEEEEHHHHG--GGHHHHHHTTTTTTCCCEEEEESBBCC-CTTCTTTCBCSHHHHTTTSTT
T ss_pred HHHHHHHHHc-----CCEEEEEecHHHHH--HHHHHHHHHHhhcCCCEEEEEECCccC-CCCCcccCccHHHHHHHccCC
Confidence 3456666664 35777888877652 122234667888999999998665541 11111112223433322 15
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
+..+. =.|+.++..+++.|++. ++|++|-.
T Consensus 449 l~v~~--P~d~~e~~~~~~~a~~~----~~Pv~i~~ 478 (629)
T 2o1x_A 449 VRIGL--PKDAAELRGMLKYAQTH----DGPFAIRY 478 (629)
T ss_dssp CEEEC--CSSHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred cEEEe--cCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 54443 34788888888887753 68998854
No 82
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=83.34 E-value=4.5 Score=41.81 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP 105 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~ 105 (355)
+.+|+|+|++ +..+++++.++++.. ..++.+..++..++|+++++.+-+++.......+.+..|++-+. .+|
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~-~iP 439 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFR-SVP 439 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHH-TST
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhc-CCC
Confidence 3445566554 433567788999874 23455777788999999987766654321111222233443322 355
Q ss_pred eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
.+.| .=.|+.++..+++.|+ ..++|++|-
T Consensus 440 ~l~V~~P~d~~e~~~~l~~a~----~~~gp~~ir 469 (616)
T 3mos_A 440 TSTVFYPSDGVATEKAVELAA----NTKGICFIR 469 (616)
T ss_dssp TEEEECCCSHHHHHHHHHHHH----TCCSEEEEE
T ss_pred CCEEEecCCHHHHHHHHHHHH----hcCCCEEEE
Confidence 5544 3347777777766554 457898774
No 83
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=82.19 E-value=5.3 Score=41.97 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
.+|.|+|+. +.-++++..+.--+.- ...++..++..++||++++...+++.........+..|++-+. .+|.
T Consensus 441 ~~A~GlA~~----gG~~P~~~tf~~Fs~f---~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr-~iPn 512 (690)
T 3m49_A 441 AAMNGIALH----GGLKTYGGTFFVFSDY---LRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALR-AMPN 512 (690)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGGG---GHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHH-TSTT
T ss_pred HHHHHHHHc----CCCEEEEEecHHHHHH---HHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHh-cCCC
Confidence 455666654 3456676655333310 1224667889999999999888765432222223334544332 3344
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
++| .=.|+.++..+++.|++ ..++|++|-
T Consensus 513 l~V~~Pad~~E~~~~l~~Ai~---~~~~Pv~ir 542 (690)
T 3m49_A 513 VSVIRPADGNESVAAWRLALE---STNKPTALV 542 (690)
T ss_dssp CEEECCSSHHHHHHHHHHHHH---CSSSCEEEE
T ss_pred CEEEeeCCHHHHHHHHHHHHH---cCCCCEEEE
Confidence 333 22467777777777664 236899984
No 84
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=81.33 E-value=4.3 Score=41.23 Aligned_cols=106 Identities=20% Similarity=0.113 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|.|.|.+. +.-.++++..|=|+++- .-++..|-.-++|+|+|.-+-..........+ ..|....... -.
T Consensus 64 aAdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~~g~~~~Q--e~d~~~~~~~~tk~ 135 (578)
T 3lq1_A 64 FALGLAKAS---KRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHELRNVGAPQ--AMDQLHLYGSHVKD 135 (578)
T ss_dssp HHHHHHHHH---CCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGGTTSSCTT--CCCCTTTTGGGSSE
T ss_pred HHHHHHHhh---CCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCC--CcCHhhHHhhheee
Confidence 455665553 33344555557777654 23577888899999999876432110000001 1122221111 12
Q ss_pred eEEEeC-CCHH----HHHHHHHHHHHHHHcC-CCCeEEEEEe
Q psy14560 106 GIWVDG-MDVL----AVREASKFAVNYASSG-KGPLVLEVVT 141 (355)
Q Consensus 106 ~~~VdG-~D~~----~v~~a~~~Al~~ar~~-~gP~lIev~t 141 (355)
..+|.. .+.. .+..++++|+..|..+ .||+.|++..
T Consensus 136 ~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 136 FTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred EeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 344432 2322 2345788888888775 6999999975
No 85
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=79.52 E-value=7.3 Score=40.99 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG 106 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~ 106 (355)
.+|.|+|+. +.-++++..+..=+. . ..-++..++..++||+++....+++.........+..|++-+. .+|+
T Consensus 446 ~~A~GlA~~----gG~~Pv~~tF~~F~d-~--~~~~ir~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr-~iPn 517 (700)
T 3rim_A 446 AILSGIVLH----GPTRAYGGTFLQFSD-Y--MRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALR-AIPR 517 (700)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG-G--GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHH-TSTT
T ss_pred HHHHHHHHc----CCCEEEEEecHHHHH-H--HHHHHHHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHh-cCCC
Confidence 445666654 345666664433321 1 1224677889999999999888876442222333444554432 2444
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHHHcCC--CCeEEE
Q psy14560 107 IWV-DGMDVLAVREASKFAVNYASSGK--GPLVLE 138 (355)
Q Consensus 107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~--gP~lIe 138 (355)
++| -=.|+.++..+++.|++. .+ +|++|-
T Consensus 518 l~V~~Pad~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 518 LSVVRPADANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp CEEECCSSHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CEEEeCCCHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 333 224677777777776642 34 699984
No 86
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=79.16 E-value=6.6 Score=41.03 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceE
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGI 107 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~ 107 (355)
+|.|+|+. +.-++++.++.+-+. -..+++..++..++|+++++...+++.........+..+++.+. .+|.+
T Consensus 417 ~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr-~iP~l 488 (673)
T 1r9j_A 417 ILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALR-AMPNL 488 (673)
T ss_dssp HHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-HSTTC
T ss_pred HHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHc-CCCCC
Confidence 45665554 445777777755442 22455778899999999998877766532222222334444332 23433
Q ss_pred EE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 108 WV-DGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 108 ~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
+| .=.|+.++..+++.|++. .++|++|-.
T Consensus 489 ~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 518 (673)
T 1r9j_A 489 QVIRPSDQTETSGAWAVALSS---IHTPTVLCL 518 (673)
T ss_dssp EEECCSSHHHHHHHHHHHHHC---TTCCEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHh---CCCeEEEEE
Confidence 33 234777887777777642 378999843
No 87
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=78.45 E-value=4.3 Score=38.45 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHhcCCCCeEEE-EeCcccccccHHHHHHH-HHHH--------cCCCEEEEEEeCCCcceeeccccCCC
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFA-LYGDGASNQGQNFEAYN-IAKL--------WGIPCIYVCENNGYGMGTSAERSSAS 94 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~-~~GDGa~~~G~~~EaL~-~Aa~--------~~LPvi~Vv~NN~~~~~~~~~~~~~~ 94 (355)
.+.+|.|+|++ + -++++. .++|+.. ..++.+. .++. .++|+++++.+-+ +.. ...+.+.
T Consensus 64 ~~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~--G~th~s~ 132 (338)
T 1qs0_B 64 IVGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIY--GGQTHSQ 132 (338)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSS--CCSSSSC
T ss_pred HHHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCC--Ccccccc
Confidence 44557777765 2 355554 4888872 2334343 3432 3599999986544 221 1222223
Q ss_pred ccHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560 95 TDYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV 140 (355)
Q Consensus 95 ~d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~ 140 (355)
.|..-. +. |+..+.- .|+.+....++.|++ .++|++|-..
T Consensus 133 ~d~~~l~~iP~l~V~~P--sd~~e~~~~l~~A~~----~~~Pv~i~~p 174 (338)
T 1qs0_B 133 SPEAMFTQVCGLRTVMP--SNPYDAKGLLIASIE----CDDPVIFLEP 174 (338)
T ss_dssp CCHHHHTTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEEE
T ss_pred cHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----cCCcEEEEEc
Confidence 344333 22 5555543 478888888888775 3789998543
No 88
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=77.50 E-value=6.2 Score=39.92 Aligned_cols=106 Identities=6% Similarity=0.061 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec---c--ccC-CCccHhhh
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA---E--RSS-ASTDYYTR 100 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~---~--~~~-~~~d~~~~ 100 (355)
-+|.|.|.+. + -..+++..|=|+++ ..-++..|-..++|+|+|.-+......... . ... ...+....
T Consensus 77 ~~A~GyAr~t---G-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
T 2vbf_A 77 YMADGYARTK---K-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKM 149 (570)
T ss_dssp HHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHH
T ss_pred HHHHHHHHHh---C-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHH
Confidence 3466666542 3 33445555666544 234577788899999999987663221000 0 000 00112222
Q ss_pred cC--CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 101 GD--YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 101 A~--G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.. --...++. + +++...+++|++.+...+||+.|++...
T Consensus 150 ~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 150 HEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp TGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred hhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 21 22345554 3 4566777778777776779999999764
No 89
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=77.06 E-value=5.3 Score=40.31 Aligned_cols=107 Identities=9% Similarity=0.021 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcce---eeccc--cC-CCccHhhh
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMG---TSAER--SS-ASTDYYTR 100 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~---~~~~~--~~-~~~d~~~~ 100 (355)
-+|.|.|.+. + -..+++..|=|+++. .-++..|-.-++|+|+|.-+-..... ..... .. ...++...
T Consensus 56 ~~A~Gyar~t---g-~~v~~~TsGpG~~N~---~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~ 128 (563)
T 2vk8_A 56 YAADGYARIK---G-MSCIITTFGVGELSA---LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRM 128 (563)
T ss_dssp HHHHHHHHHH---S-CEEEEEETTHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHH
T ss_pred HHHHHHHHhh---C-CcEEEEcCCCcHHHH---HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHH
Confidence 3466666653 3 234555557776543 34577788899999999987542110 00000 00 01123222
Q ss_pred c--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 101 G--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 101 A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
. .--...++. +++++.+.+++|++.+...+||+.|++..+
T Consensus 129 ~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 170 (563)
T 2vk8_A 129 SANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPAN 170 (563)
T ss_dssp HHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEETT
T ss_pred hhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 1 122344554 455566777777777766679999999764
No 90
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=74.45 E-value=8.7 Score=38.57 Aligned_cols=106 Identities=9% Similarity=0.069 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcce---eeccccC---CCccHhhh
Q psy14560 27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMG---TSAERSS---ASTDYYTR 100 (355)
Q Consensus 27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~---~~~~~~~---~~~d~~~~ 100 (355)
-+|.|.|.+. ++ ..+++..|=|.++. .-++..|-..++|+|+|.-+-..... ....... ...++...
T Consensus 57 ~~A~Gyar~t---g~-~v~~~tsGpG~~N~---~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~ 129 (552)
T 1ovm_A 57 YAADGYARCK---GF-AALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHM 129 (552)
T ss_dssp HHHHHHHHHH---SC-EEEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHH
T ss_pred HHHHHHHHhh---CC-cEEEEccCCcHHHH---HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHH
Confidence 3566766653 32 35555667776443 34577788899999999987552211 0000000 01122222
Q ss_pred cC--CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560 101 GD--YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY 142 (355)
Q Consensus 101 A~--G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~ 142 (355)
.. -....++.. +++.+.+++|++.+...+||+.|++..+
T Consensus 130 ~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 130 SEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp TGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred HHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 21 223455543 4566677777777766569999999764
No 91
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=73.63 E-value=6.3 Score=37.57 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhcCCCCeEEE-EeCcccccccHHHHHHHH-HH--------HcCCCEEEEEEeCCCcc-eeeccccCCC
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFA-LYGDGASNQGQNFEAYNI-AK--------LWGIPCIYVCENNGYGM-GTSAERSSAS 94 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~-~~GDGa~~~G~~~EaL~~-Aa--------~~~LPvi~Vv~NN~~~~-~~~~~~~~~~ 94 (355)
+.+|.|+|++ + -++++. .++|... ..++.+.. ++ ..++|+++++.+ ++.. ..+.. + ..
T Consensus 75 v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tH-s-~~ 143 (341)
T 2ozl_B 75 AGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQH-S-QC 143 (341)
T ss_dssp HHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGG-C-CC
T ss_pred HHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcch-h-hH
Confidence 4456666664 2 455665 4888872 23343443 33 379999999884 5321 11111 1 11
Q ss_pred ccHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 95 TDYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 95 ~d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
.+ +-. +. |+..+.- .|+.+...+++.|++ .++|++|-.
T Consensus 144 ~e-a~l~~iP~l~V~~P--sd~~e~~~~l~~a~~----~~~Pv~i~~ 183 (341)
T 2ozl_B 144 FA-AWYGHCPGLKVVSP--WNSEDAKGLIKSAIR----DNNPVVVLE 183 (341)
T ss_dssp CH-HHHHTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred HH-HHhccCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEEEE
Confidence 22 111 21 5544433 478888888887765 368998854
No 92
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=73.13 E-value=10 Score=36.46 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEE-eCcccccccHHHHHH-HHHHHc--------CCCEEEEEEeCCCcceeeccccCCCc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFAL-YGDGASNQGQNFEAY-NIAKLW--------GIPCIYVCENNGYGMGTSAERSSAST 95 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~-~GDGa~~~G~~~EaL-~~Aa~~--------~LPvi~Vv~NN~~~~~~~~~~~~~~~ 95 (355)
+.+|.|+|++ + -++++.+ ++|... ..++.+ +-++.. ++|+++++.+-+.... . ......
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~-g--~~hs~~ 179 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRG-G--LYHSNS 179 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCC-C--cccccc
Confidence 4456666654 3 4566654 999772 123333 335544 9999999876552211 1 111112
Q ss_pred cHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 96 DYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 96 d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
+.+-+ +. |+.++.- .|+.+...+++.|++ .++|++|-.
T Consensus 180 ~~a~l~~iPnl~V~~P--sd~~e~~~ll~~A~~----~~~Pv~i~~ 219 (369)
T 1ik6_A 180 PEAIFVHTPGLVVVMP--STPYNAKGLLKAAIR----GDDPVVFLE 219 (369)
T ss_dssp HHHHHHTCTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred HHHHHcCCCCcEEEec--CCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 22111 21 5544433 478888888888764 578999853
No 93
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=70.73 E-value=16 Score=34.27 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEE-eCcccccccHHHHHHH-HHHH--------cCCCEEEEEEeCCCcceeeccccCCCc
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFAL-YGDGASNQGQNFEAYN-IAKL--------WGIPCIYVCENNGYGMGTSAERSSAST 95 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~~-~GDGa~~~G~~~EaL~-~Aa~--------~~LPvi~Vv~NN~~~~~~~~~~~~~~~ 95 (355)
+..|.|+|++ + -++++.+ +++... ..++.+. .++. .++|+++++. -+++.... ......
T Consensus 64 v~~a~G~A~~----G-~~p~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g--~~hs~~ 132 (324)
T 1umd_B 64 VGAALGMAAH----G-LRPVAEIQFADYIF---PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGG--HHHSQS 132 (324)
T ss_dssp HHHHHHHHHH----T-CEEEEECSSGGGCG---GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCG--GGSSCC
T ss_pred HHHHHHHHHC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCC--Cccchh
Confidence 4557777665 3 3556654 888862 2334443 2343 6999998876 24322111 111223
Q ss_pred cHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 96 DYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 96 d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
+.+-. +. |+..+. =.|+.+....++.|++ .++|++|-
T Consensus 133 ~~a~~~~iP~~~V~~--P~d~~e~~~~l~~a~~----~~~Pv~i~ 171 (324)
T 1umd_B 133 PEAHFVHTAGLKVVA--VSTPYDAKGLLKAAIR----DEDPVVFL 171 (324)
T ss_dssp CHHHHHTSTTCEEEE--CCSHHHHHHHHHHHHH----CSSCEEEE
T ss_pred HHHHHhcCCCCEEEE--eCCHHHHHHHHHHHHh----cCCCEEEE
Confidence 33222 22 444443 3478888888888874 57899884
No 94
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=68.17 E-value=10 Score=35.55 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEE-eCcccccccHHHHHHH-HHHH--------cCCCEEEEEEeCCCcceeeccccCCC
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFAL-YGDGASNQGQNFEAYN-IAKL--------WGIPCIYVCENNGYGMGTSAERSSAS 94 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~-~GDGa~~~G~~~EaL~-~Aa~--------~~LPvi~Vv~NN~~~~~~~~~~~~~~ 94 (355)
.+.+|.|+|++ + -++++++ ++++.. ..++.+. .++. .++|+++++. .+++... ......
T Consensus 62 ~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~--g~~hs~ 130 (324)
T 1w85_B 62 IGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHT--PELHSD 130 (324)
T ss_dssp HHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCC--CTTSSC
T ss_pred HHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCC--CCcccc
Confidence 34456666664 2 4555544 888872 2334343 2443 7999998875 3332211 111222
Q ss_pred ccHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560 95 TDYYTRGDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE 138 (355)
Q Consensus 95 ~d~~~~A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe 138 (355)
.+.+-. ..+|...| .=.|+.+....++.|++ .++|++|-
T Consensus 131 ~~~a~~-~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~ 170 (324)
T 1w85_B 131 SLEGLV-AQQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFL 170 (324)
T ss_dssp CCHHHH-TTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred cHHHHH-ccCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEE
Confidence 333222 23444322 33578888888888774 57899884
No 95
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=67.10 E-value=21 Score=35.87 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP 105 (355)
Q Consensus 28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~ 105 (355)
+|.|.|.+. +.-.++++..|=|+++- .-++..|-.-++|+|+|.-+-..........+ ..|....... -.
T Consensus 61 ~AdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~ 132 (556)
T 3hww_A 61 LALGLAKVS---KQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDCGANQ--AIRQPGMFASHPTH 132 (556)
T ss_dssp HHHHHHHHH---CSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTT--CCCCTTTTTTCSSE
T ss_pred HHHHHHHhh---CCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCc--cccHHHHHhhheeE
Confidence 455555542 33344555557777654 23577888899999999876543221111111 1122222111 12
Q ss_pred eEEEeCCC----HHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560 106 GIWVDGMD----VLAVREASKFAVNYASSGKGPLVLEVVT 141 (355)
Q Consensus 106 ~~~VdG~D----~~~v~~a~~~Al~~ar~~~gP~lIev~t 141 (355)
...+...+ +..+.+++++|+. ....||+.|++..
T Consensus 133 ~~~v~~~~~~~~~~~i~~~i~~A~~--~~r~GPV~i~iP~ 170 (556)
T 3hww_A 133 SISLPRPTQDIPARWLVSTIDHALG--TLHAGGVHINCPF 170 (556)
T ss_dssp EEECCCCCTTSCHHHHHHHHHHHHH--SCCSSCEEEEEEC
T ss_pred EEecCCCcccccHHHHHHHHHHHHh--cCCCCCEEEeCCc
Confidence 33443222 3457778888772 1346899999975
No 96
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=67.09 E-value=17 Score=40.68 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc---ceeeccccCCCccH-hhh
Q psy14560 25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG---MGTSAERSSASTDY-YTR 100 (355)
Q Consensus 25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~---~~~~~~~~~~~~d~-~~~ 100 (355)
.+.+++|++++ +..+++.+--.++.. ..|.|..++-..+|+|+++.+-... ++.... ..|+ ..+
T Consensus 66 A~~aaiGAa~a------GaR~~t~Ts~~Gl~l--m~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~----hsd~~~ar 133 (1231)
T 2c42_A 66 AAGAVHGALAA------GALTTTFTASQGLLL--MIPNMYKISGELLPGVFHVTARAIAAHALSIFGD----HQDIYAAR 133 (1231)
T ss_dssp HHHHHHHHHHT------TCCEEEEECHHHHHH--HHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCC----SHHHHTTT
T ss_pred HHHHHHHHHHc------CChHhhhccHHHHHH--HHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCc----hhhHHHHh
Confidence 45667888776 444555543333333 3466765555689988888876532 221111 1122 122
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560 101 GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS 148 (355)
Q Consensus 101 A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs 148 (355)
..|++.+. -.++.+.++.+..|.+.+.+.+-|+++-....| .+|.
T Consensus 134 ~~G~~vl~--pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~-~sh~ 178 (1231)
T 2c42_A 134 QTGFAMLA--SSSVQEAHDMALVAHLAAIESNVPFMHFFDGFR-TSHE 178 (1231)
T ss_dssp TSSCEEEE--CCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTT-TTTC
T ss_pred cCCcEEEE--CCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcc-cccc
Confidence 23654443 357888888888888888778889997665543 4564
No 97
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=61.13 E-value=14 Score=35.07 Aligned_cols=97 Identities=12% Similarity=0.007 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhcCCCCeEEE-EeCcccccccHHHHHHH-HHHHc--------CC-CEEEEEEeCCCcceeeccccCCC
Q psy14560 26 VPLGTGIAFAAQYKGTGGVCFA-LYGDGASNQGQNFEAYN-IAKLW--------GI-PCIYVCENNGYGMGTSAERSSAS 94 (355)
Q Consensus 26 lp~AiGaA~A~k~~~~~~~vv~-~~GDGa~~~G~~~EaL~-~Aa~~--------~L-Pvi~Vv~NN~~~~~~~~~~~~~~ 94 (355)
+.+|.|+|++ + -++++. .++|+.. ..++.+. .++.+ ++ |+++++..-+. .. .....+.
T Consensus 80 v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~--G~th~~~ 148 (342)
T 2bfd_B 80 VGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GH--GALYHSQ 148 (342)
T ss_dssp HHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SS--CGGGSSC
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CC--CcchhhH
Confidence 4456666664 3 456664 4888863 2233332 34433 34 99998775332 11 1222223
Q ss_pred ccHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560 95 TDYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV 139 (355)
Q Consensus 95 ~d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev 139 (355)
.|..-. +. |+..+ .=.|+.+...+++.|++ .++|++|-.
T Consensus 149 ~d~~~l~~iP~l~V~--~Psd~~e~~~~l~~a~~----~~~Pv~i~~ 189 (342)
T 2bfd_B 149 SPEAFFAHCPGIKVV--IPRSPFQAKGLLLSCIE----DKNPCIFFE 189 (342)
T ss_dssp CCHHHHHTSTTCEEE--CCSSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred hHHHHHhcCCCcEEE--eeCCHHHHHHHHHHHHh----cCCcEEEEe
Confidence 344332 22 44443 33578888888888775 378999844
No 98
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=41.77 E-value=1.4e+02 Score=24.27 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=53.2
Q ss_pred eEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee-ccccCC------CccHh----------hh--cCC
Q psy14560 44 VCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS-AERSSA------STDYY----------TR--GDY 103 (355)
Q Consensus 44 ~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~-~~~~~~------~~d~~----------~~--A~G 103 (355)
.++.|-||.- .-+-.+-|-+..|...-=.|.+-+.-|..-+... ...+.. ...+. -. +.|
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsg 83 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSG 83 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCC
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCce
Confidence 3566666654 3344455556666555555666666666443211 010000 00010 01 125
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCe
Q psy14560 104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPL 135 (355)
Q Consensus 104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~ 135 (355)
+-.++..|.|.+++..|+++.++.+|++.|.+
T Consensus 84 vm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 84 VMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 55677799999999999999999999987754
No 99
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=32.69 E-value=55 Score=23.80 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=24.6
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCCCe
Q psy14560 107 IWVDGMDVLAVREASKFAVNYASSGKGPL 135 (355)
Q Consensus 107 ~~VdG~D~~~v~~a~~~Al~~ar~~~gP~ 135 (355)
++..|.|.+++..|+++.++.+|++.|.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 45678899999999999999999887654
No 100
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=30.56 E-value=55 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=27.9
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeE
Q psy14560 103 YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLV 136 (355)
Q Consensus 103 G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~l 136 (355)
|+-.++..|.|.+++..|+++.++.+|++.|.+-
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtvt 35 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTVT 35 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceEE
Confidence 3445677899999999999999999999887543
No 101
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=27.03 E-value=46 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCeEEEEeCccc-ccccHHHHHHHHHH-HcCCCEEEEEEe
Q psy14560 42 GGVCFALYGDGA-SNQGQNFEAYNIAK-LWGIPCIYVCEN 79 (355)
Q Consensus 42 ~~~vv~~~GDGa-~~~G~~~EaL~~Aa-~~~LPvi~Vv~N 79 (355)
...+|+++|+=. ......|| +..|. ..++|||.|-.+
T Consensus 80 Sk~vIllIs~~T~~s~~v~wE-Ie~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 80 SKNIILFLSSITANSRALREE-MNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp EEEEEEECCTTCCCCHHHHHH-HHHHTTTTCCCEEEEETT
T ss_pred cCcEEEEEecCccccchhHHH-HHHHHHhcCCcEEEEECC
Confidence 456889999988 35566775 99999 999999999765
No 102
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=25.27 E-value=77 Score=23.60 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=23.2
Q ss_pred cceecHHHHHHHHHHHH--------HHHHHHHHHhhhhh
Q psy14560 301 KVTVTKQDALLYYRQMQ--------TIRRLETSAGNLYK 331 (355)
Q Consensus 301 ~~~~~~~~~~~~~~~m~--------~~r~~~~~~~~~~~ 331 (355)
-..+|+||+++.--+.+ .||.+|+-+|+|.-
T Consensus 11 y~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~LLv 49 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLV 49 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999998766554 57889999998853
No 103
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=23.88 E-value=1.7e+02 Score=24.37 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeC
Q psy14560 42 GGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80 (355)
Q Consensus 42 ~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN 80 (355)
...+|.++.||..+.+...+.+..+...++++..|-.-+
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESC
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecC
Confidence 457899999999877666677777777788776665543
No 104
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=21.74 E-value=2e+02 Score=24.25 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=28.3
Q ss_pred CeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560 43 GVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG 81 (355)
Q Consensus 43 ~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~ 81 (355)
..||+++ ||. ...|..+| +..|...+.||+.+..+-+
T Consensus 71 D~viA~l-dg~~~D~Gt~~E-iG~A~a~gkPVi~~~~D~R 108 (162)
T 3ehd_A 71 DLLVALL-DGPTIDAGVASE-IGVAYAKGIPVVALYTDSR 108 (162)
T ss_dssp SEEEEEC-CSSSCCHHHHHH-HHHHHHTTCCEEEECCCGG
T ss_pred CEEEEEC-CCCCCCCCHHHH-HHHHHHCCCEEEEEEcCcc
Confidence 3455555 765 67888888 8899999999998887765
Done!