RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14560
(355 letters)
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 274 bits (703), Expect = 8e-91
Identities = 101/181 (55%), Positives = 127/181 (70%), Gaps = 12/181 (6%)
Query: 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
KNFYGG+GIVGAQVPL TG+AFA +Y+G V +GDGA+NQGQ +E++N+A LW +
Sbjct: 102 EKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKL 161
Query: 72 PCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASKFAVNYAS 129
P I+V ENN Y MGT+ ERSS+ TD Y RG+ IPG VDGMDVLAVREA+K AV A
Sbjct: 162 PVIFVIENNLYAMGTAVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERAR 221
Query: 130 SGKGPLVLEVVTYRYSGHSMSDPGT----------SFRDPITSFKEKMLNSELATVDELK 179
SGKGP++LE+ TYR+ GHSMSDP RDPI K +++ +A+ +ELK
Sbjct: 222 SGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELK 281
Query: 180 E 180
E
Sbjct: 282 E 282
Score = 112 bits (283), Expect = 1e-28
Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 14/87 (16%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EA AVG+ A ++ D +I++YR HG GV V++ELTGR TGC
Sbjct: 41 EAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAELTGRETGC------------ 88
Query: 240 AKGKGGSMHMYA--KNFYGGNGIVGAQ 264
+KGKGGSMHM+ KNFYGG+GIVGAQ
Sbjct: 89 SKGKGGSMHMFDREKNFYGGHGIVGAQ 115
Score = 68.8 bits (169), Expect = 4e-13
Identities = 22/40 (55%), Positives = 24/40 (60%)
Query: 306 KQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
K++ L YR M IRR E AG LY I GFCHLY GQ
Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQ 40
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 259 bits (664), Expect = 2e-84
Identities = 107/179 (59%), Positives = 130/179 (72%), Gaps = 13/179 (7%)
Query: 14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
NFYGG+GIVGAQVPLG G+AFA +Y V FALYGDGA+NQGQ FEA NIA LW +P
Sbjct: 132 NFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPV 191
Query: 74 IYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKG 133
I+VCENN YGMGT+ R++ S YY RGDY+PG+ VDGMDVLAV++A KFA +A S G
Sbjct: 192 IFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NG 250
Query: 134 PLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
P+VLE+ TYRY GHSMSDPG+++ RDPI ++ +L ELAT ELK+
Sbjct: 251 PIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKD 309
Score = 99.4 bits (248), Expect = 2e-23
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 16/90 (17%)
Query: 179 KEACAVGMRAVMREQDSIISAYRVHGWTYL-MGVSVFGVLSELTGRRTGCAKGKGPISWE 237
+EA AVGM A + ++D+II+AYR H T+L G +V V +EL GR+ G
Sbjct: 68 QEAVAVGMEAAITKEDAIITAYRDHC-THLGRGGTVLEVFAELMGRKDG----------- 115
Query: 238 CCAKGKGGSMHMYAK--NFYGGNGIVGAQT 265
C++GKGGSMH Y K NFYGG+GIVGAQ
Sbjct: 116 -CSRGKGGSMHFYKKDANFYGGHGIVGAQV 144
Score = 81.7 bits (202), Expect = 3e-17
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 279 ASEATFETK-PFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
T ET PFK H + PS V +KQ+ + ++R M +RR+E +A +LYK K+IRG
Sbjct: 2 TDPITIETPVPFKGHLC-DPPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRG 60
Query: 338 FCHLYSGQ 345
FCHLY GQ
Sbjct: 61 FCHLYDGQ 68
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 255 bits (654), Expect = 1e-83
Identities = 100/181 (55%), Positives = 122/181 (67%), Gaps = 14/181 (7%)
Query: 14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
FYGGNGIVGAQVPLG GIA AA+Y+G V L+GDGA+NQGQ FEA N A LW +P
Sbjct: 98 RFYGGNGIVGAQVPLGAGIALAAKYRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPV 157
Query: 74 IYVCENNGYGMGTSAERSSASTDYYT--RGDYIPGIWVDGMDVLAVREASKFAVNYASSG 131
I+VCENN Y + T AERSSAST Y RG IPGI VDGMD LAV +A KFA A +G
Sbjct: 158 IFVCENNQYAISTPAERSSASTTYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTG 217
Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELK 179
GP ++E+VTYRY GHSMSD +++R DPI K+ +++ + + +ELK
Sbjct: 218 NGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELK 277
Query: 180 E 180
E
Sbjct: 278 E 278
Score = 83.5 bits (207), Expect = 3e-18
Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 16/89 (17%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EA VG+ A + D +I YR HG GVS+ V++ELTG G C
Sbjct: 33 EALQVGIAAALNPGDYVIPTYRDHGNLLARGVSLEQVMAELTGNEAG------------C 80
Query: 240 AKGKGGSMHMYAK----NFYGGNGIVGAQ 264
+KGKGGSMH Y FYGGNGIVGAQ
Sbjct: 81 SKGKGGSMHGYYAPKNNRFYGGNGIVGAQ 109
Score = 44.6 bits (106), Expect = 3e-05
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 314 RQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
+M T+RR+E + LY+ K IRGFCHLY+GQ
Sbjct: 1 YRMMTLRRMEDARDALYQRKGIRGFCHLYAGQ 32
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 244 bits (626), Expect = 1e-79
Identities = 84/182 (46%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
KNF+GGNGIVG QVPL G A A +Y+G V +GDGA+N+G EA N A LW +
Sbjct: 96 EKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKL 155
Query: 72 PCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASKFAVNYAS 129
P I+VCENNGY + T R +A T R IPGI VDG DVLAV EA+K AV A
Sbjct: 156 PVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERAR 215
Query: 130 SGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELATVDEL 178
+G GP ++E VTYR GHS SD + +R DPI ++ ++ + + T +EL
Sbjct: 216 AGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEEL 275
Query: 179 KE 180
Sbjct: 276 AA 277
Score = 93.3 bits (233), Expect = 1e-21
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 14/87 (16%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EA AVG+ A +R D + YR HG GV + +L+EL G+ TG
Sbjct: 35 EAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKETGP------------ 82
Query: 240 AKGKGGSMHM--YAKNFYGGNGIVGAQ 264
KG+GGSMH+ KNF+GGNGIVG Q
Sbjct: 83 CKGRGGSMHIGDKEKNFFGGNGIVGGQ 109
Score = 52.1 bits (126), Expect = 1e-07
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 312 YYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
YR M IRR + LY++ I GF HL GQ
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQ 34
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 222 bits (567), Expect = 7e-70
Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 14/190 (7%)
Query: 6 IVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYN 64
+ + K F GG+GIVG Q+PL G A A +Y+GT GV A +GDGA+NQG EA N
Sbjct: 122 MHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALN 181
Query: 65 IAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASK 122
A +W +P ++V ENN Y + R +A+ R IPG+ VDG DVLAV EA+K
Sbjct: 182 FAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241
Query: 123 FAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSE 171
AV A +G+GP ++E VTYRY GHS SD + +R DPI ++ ++ +
Sbjct: 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAG 301
Query: 172 LATVDELKEA 181
+ + +EL+
Sbjct: 302 ILSEEELEAI 311
Score = 83.1 bits (206), Expect = 9e-18
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 180 EACAVGMRAVMRE-QDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
EA VG A +R +D I YR HG GV + +++EL G+ TG
Sbjct: 66 EAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGP----------- 114
Query: 239 CAKGKGGSMHMYAK--NFYGGNGIVGAQ 264
KG+GGSMH K F GG+GIVG Q
Sbjct: 115 -CKGRGGSMHYSDKEKGFLGGSGIVGTQ 141
Score = 48.8 bits (117), Expect = 2e-06
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 302 VTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
++K++ L YR M IRR + L ++ I GF HLY GQ
Sbjct: 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQ 65
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 153 bits (389), Expect = 1e-43
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW 69
P N N +G Q G+A+A + +G V +GDG +++G +EA N A ++
Sbjct: 112 PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVF 171
Query: 70 GIPCIYVCENNGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNY 127
P ++ +NN + + + +A+ + IPG+ VDG DVLAV +K AV
Sbjct: 172 KAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELAT-- 174
A SG GP ++E VTYR H+ +D T +R DPI ++ + L
Sbjct: 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEE 291
Query: 175 -VDELKEAC 182
+ L+E
Sbjct: 292 QEEALEEEA 300
Score = 37.5 bits (88), Expect = 0.007
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSV 213
EA VG +R+ D + +YR H GV +
Sbjct: 62 EAAQVGSALALRKDDWVFPSYRDHAAMLARGVPL 95
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
Reviewed.
Length = 341
Score = 151 bits (384), Expect = 5e-43
Identities = 75/191 (39%), Positives = 108/191 (56%), Gaps = 23/191 (12%)
Query: 11 SPKNFYGGNGIVGAQVPLGTGIAFAAQY-----KGTG----GVCFALYGDGASNQGQNFE 61
+P NF GG +G +P+ G AF + Y K CF +GDG +N GQ FE
Sbjct: 119 APHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACF--FGDGTTNNGQFFE 176
Query: 62 AYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVRE 119
N+A LW +P I+V ENN + +G + RS++ + + + + +PGI VDGMDVLAVRE
Sbjct: 177 CLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVRE 236
Query: 120 ASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT----------SFRDPITSFKEKMLN 169
+K AV A G GP ++E +TYR+ GHS++DP RDPI K +++
Sbjct: 237 VAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIID 296
Query: 170 SELATVDELKE 180
+ELA+ EL +
Sbjct: 297 NELASQKELNK 307
Score = 52.6 bits (126), Expect = 1e-07
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 179 KEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
+EA + G+ ++ E D + S YR H GV V++EL G+ TGC
Sbjct: 58 QEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGC----------- 106
Query: 239 CAKGKGGSMHMY--AKNFYGGNGIVG 262
++G+GGSMH++ NF GG +G
Sbjct: 107 -SRGRGGSMHIFSAPHNFLGGFAFIG 131
Score = 36.0 bits (83), Expect = 0.020
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 299 SNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
SN+ + L+ Y M R E +Y + GF HLY+GQ
Sbjct: 12 SNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQ 58
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 150 bits (380), Expect = 1e-41
Identities = 71/188 (37%), Positives = 107/188 (56%), Gaps = 19/188 (10%)
Query: 11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYK-------GTGGVCFALYGDGASNQGQNFEAY 63
N GG +G +P+ TG AF+++Y+ V A +GDG N GQ FE
Sbjct: 185 KEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECL 244
Query: 64 NIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREAS 121
N+A LW +P ++V ENN + +G S R+++ + + +G +PG+ VDGMDVL VRE +
Sbjct: 245 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVA 304
Query: 122 KFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT----------SFRDPITSFKEKMLNSE 171
K A+ A G+GP ++E TYR+ GHS++DP + RDPI + K+ ++ +
Sbjct: 305 KEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKKYLIENG 364
Query: 172 LATVDELK 179
LAT ELK
Sbjct: 365 LATEAELK 372
Score = 57.6 bits (139), Expect = 3e-09
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 26/128 (20%)
Query: 179 KEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
+EA + G ++++ DS++S YR H GV V+SEL G+ TGC
Sbjct: 124 QEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGC----------- 172
Query: 239 CAKGKGGSMHMYAK--NFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSE 296
+G+GGSMHM++K N GG +G G A+ A F +K ++ L E
Sbjct: 173 -CRGQGGSMHMFSKEHNLLGGFAFIG-----------EGIPVATGAAFSSK-YRREVLKE 219
Query: 297 GPSNKVTV 304
+ VT+
Sbjct: 220 ESCDDVTL 227
Score = 34.1 bits (78), Expect = 0.11
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 299 SNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
++ + VT+++ L Y M R E +Y + GF HLY+GQ
Sbjct: 78 ASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQ 124
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 49.1 bits (118), Expect = 9e-07
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 27 PLGTGIAFAAQYKGTGG-----VCFALYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVC 77
P+ G A Q G + ++GD A + QG +E N++ L G I++
Sbjct: 120 PVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIV 179
Query: 78 ENNGYGMGTSAERSSASTDYYT---RGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGP 134
NN G T S S+ Y T + P V+G D AV A++ A+ Y K
Sbjct: 180 VNNQIGFTTDPRDSR-SSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKD 238
Query: 135 LVLEVVTYRYSGHS-MSDPGTSFRDPI 160
+V+++V YR GH+ + +P SF P+
Sbjct: 239 VVIDLVCYRRHGHNELDEP--SFTQPL 263
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 46.4 bits (110), Expect = 2e-05
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 48 LYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVCENNGYGMGTSAERSSASTDYYT---R 100
++GD A + QG E N++KL G I++ NN G T+ + ST Y + +
Sbjct: 349 IHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGF-TTNPLDARSTPYCSDLAK 407
Query: 101 GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD 151
P V+ D AV A++ AV Y ++ K + +++V YR GH+ +D
Sbjct: 408 MIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEAD 458
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 44.9 bits (107), Expect = 5e-05
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 31 GIAFAAQ-YKGTGG----VCFALYGDGA-SNQGQNFEAYNIAKLWGI---PCIYVCENNG 81
G A Q G + ++GD A + QG E N+++L G ++ NN
Sbjct: 309 GSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQ 368
Query: 82 YGMGTSAERSSASTDYYT---RGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
G TS + ST Y T + P V+ D AV A A+ Y + K +V++
Sbjct: 369 IGFTTSP-ADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVID 427
Query: 139 VVTYRYSGHSMSD 151
+V YR GH+ D
Sbjct: 428 LVCYRRHGHNEGD 440
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
transport and metabolism].
Length = 243
Score = 35.8 bits (83), Expect = 0.023
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIA---KLWGIPCI 74
G +G + + G+A A+ KG+ + + GDG ++GQ +EA A KL + I
Sbjct: 118 TGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAI 176
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS
subfamily, TPP-binding module;
1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis. Terpeniods are plant
natural products with important pharmaceutical activity.
DXS catalyzes a transketolase-type condensation of
pyruvate with D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
The formation of DXP leads to the formation of the
terpene precursor IPP (isopentyl diphosphate) and to the
formation of thiamine (vitamin B1) and pyridoxal
(vitamin B6).
Length = 195
Score = 35.2 bits (82), Expect = 0.025
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMG 85
+ G+A A KG A+ GDGA G FEA N A I + +N M
Sbjct: 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDN--EMS 138
Query: 86 TSAERSSASTDYYTRG-DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT 141
S + + G YI G VDG ++ A+ + + KGP++L VVT
Sbjct: 139 ISPNVGTPGNLFEELGFRYI-GP-VDGHNIEALIK----VLKEVKDLKGPVLLHVVT 189
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 35.9 bits (83), Expect = 0.033
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSF 156
G+ + GMDVL V E +K V SSG+ LVL T +SG+ D G F
Sbjct: 356 GMPIRGMDVLIVSEETKVPV---SSGETGLVLTRGTSLFSGYLGEDFGQGF 403
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridoxine, Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 617
Score = 35.5 bits (82), Expect = 0.044
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 29 GTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYN 64
G GIA AA+ KG + GDGA G FEA N
Sbjct: 120 GLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALN 155
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK
provides a link between glycolysis and the pentose
phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. In addition, the enzyme plays a central
role in the Calvin cycle in plants. Typically, TKs are
homodimers. They require TPP and divalent cations, such
as magnesium ions, for activity.
Length = 255
Score = 34.4 bits (80), Expect = 0.061
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEA------YNIAKLWGIPCIYVCEN 79
+ + G+A A + G + L GDG +G +EA Y + L I + ++
Sbjct: 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNL-----IAIVDS 165
Query: 80 NGYGMGTSAERSSASTDYYTR----GDYIPGIWVDGMDVLAVREA 120
N + + + D + G + I VDG DV + A
Sbjct: 166 NRIQIDGPTDDILFTEDLAKKFEAFGWNV--IEVDGHDVEEILAA 208
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 33.3 bits (77), Expect = 0.22
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYN-IAKLWGIPCIYVCENNG 81
+ G+A A KG A+ GDGA G FEA N I + +N
Sbjct: 121 ISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNE 177
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 641
Score = 32.4 bits (73), Expect = 0.41
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIA 66
G G + G G+A KG ++ GDGA GQ +EA N A
Sbjct: 175 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNA 223
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 31.4 bits (71), Expect = 0.68
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYV 76
GG G +G +P G+ FA + VC + GDG+ N + + AK + IP + V
Sbjct: 418 GGAGTMGFGLPAAIGVKFA--HPEATVVC--VTGDGSIQM--NIQELSTAKQYDIPVVIV 471
Query: 77 CENNGY-GM 84
NN + GM
Sbjct: 472 SLNNRFLGM 480
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 677
Score = 31.4 bits (71), Expect = 0.93
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIA 66
G G + G G+A KG A+ GDGA GQ +EA N A
Sbjct: 142 GTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNA 190
>gnl|CDD|239163 cd02762, MopB_1, The MopB_1 CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative N-terminal
iron-sulfur [4Fe-4S] cluster binding site and
molybdopterin cofactor binding site. These members
belong to the molybdopterin_binding (MopB) superfamily
of proteins.
Length = 539
Score = 30.1 bits (68), Expect = 2.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 254 FYGGNG----IVGAQTLKSLLKSISGRSYASEATFETKP 288
YGGN G +LLK++ +Y S AT + KP
Sbjct: 96 VYGGNPQAHTHAGGAYSPALLKALGTSNYFSAATADQKP 134
>gnl|CDD|132281 TIGR03237, dnd_assoc_2, DNA phosphorothioation-dependent
restriction protein DptH. A DNA sulfur modification
(phosphorothioation) system, dnd (degradation during
electrophoresis), is sparsely and sporadically
distributed among the bacteria. This protein is one
member of a three-gene restriction enzyme cassette that
depends on DNA phosphorothioation [DNA metabolism,
Restriction/modification].
Length = 1256
Score = 30.2 bits (68), Expect = 2.2
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 170 SELATVDELKEACAVGMRAVMREQDSIISAYR 201
+ +A+ D+ K + A +E D I+ R
Sbjct: 789 ARMASYDDFKTKFNLNKGAAQQEPDDILDFLR 820
>gnl|CDD|107295 cd06300, PBP1_ABC_sugar_binding_like_1, Periplasmic sugar-binding
component of uncharacterized ABC-type transport systems
that are members of the pentose/hexose sugar-binding
protein family of the type I periplasmic binding protein
superfamily. Periplasmic sugar-binding component of
uncharacterized ABC-type transport systems that are
members of the pentose/hexose sugar-binding protein
family of the type I periplasmic binding protein
superfamily, which consists of two alpha/beta globular
domains connected by a three-stranded hinge. This Venus
flytrap-like domain undergoes transition from an open to
a closed conformational state upon ligand binding.
Members of this group are predicted to be involved in
the transport of sugar-containing molecules across
cellular and organellar membranes; however their
substrate specificity is not known in detail.
Length = 272
Score = 28.8 bits (65), Expect = 3.8
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 82 YGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREA 120
YG A A D+ + GIW G D + +A
Sbjct: 164 YGDWDQAVAQKAVADFLASNPDVDGIWTQGGDAVGAVQA 202
>gnl|CDD|215827 pfam00264, Tyrosinase, Common central domain of tyrosinase. This
family also contains polyphenol oxidases and some
hemocyanins. Binds two copper ions via two sets of three
histidines. This family is related to pfam00372.
Length = 209
Score = 28.2 bits (63), Expect = 5.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 146 GHSMSDPGTSFRDPI 160
G M D T+ DPI
Sbjct: 177 GGDMGDVATAPNDPI 191
>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the
conversion of selenium to selenophosphate which is
required by a number of bacterial, archaeal and
eukaryotic organisms for synthesis of Secys-tRNA, the
precursor of selenocysteine in selenoenzymes. The
N-terminal domain of SelD is related to the ATP-binding
domains of hydrogen expression/formation protein HypE,
the AIR synthases, and FGAM synthase and is thought to
bind ATP.
Length = 287
Score = 28.3 bits (64), Expect = 5.7
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 21/53 (39%)
Query: 7 VINPSPKNFYGG--NGIV---------GAQV--------PLGTGIAFAAQYKG 40
+ P PK YG G+V GA+ PLGTGI FAA+ G
Sbjct: 136 IEGPEPK--YGLSVTGLVHPNKILRNSGAKPGDVLILTKPLGTGILFAAEMAG 186
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 28.3 bits (64), Expect = 6.5
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 31 GIAFAA--QYKGTG--GVCFALYGDGASN 55
G A AA + TG GVC A G GA+N
Sbjct: 49 GAAMAAIGYARATGKVGVCIATSGPGATN 77
>gnl|CDD|222031 pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-phosphate synthase.
This family contains 1-deoxyxylulose-5-phosphate
synthase (DXP synthase), an enzyme which catalyzes the
thiamine pyrophosphoate-dependent acyloin condensation
reaction between carbon atoms 2 and 3 of pyruvate and
glyceraldehyde 3-phosphate, to yield 1-deoxy-D-
xylulose-5-phosphate, a precursor in the biosynthetic
pathway to isoprenoids, thiamine (vitamin B1), and
pyridoxol (vitamin B6).
Length = 272
Score = 28.1 bits (64), Expect = 6.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIA 66
G+A A KG A+ GDGA G FEA N A
Sbjct: 119 AALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 157
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 28.0 bits (63), Expect = 8.7
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 9 NP--SPKNFYGGNGIVG---AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAY 63
NP S +F+ VG + L TG+A A KG G A+ GDG+ + G E
Sbjct: 101 NPEESEHDFF----TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL 156
Query: 64 NIA 66
N A
Sbjct: 157 NNA 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0909 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,673,761
Number of extensions: 1643558
Number of successful extensions: 1374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1340
Number of HSP's successfully gapped: 48
Length of query: 355
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 257
Effective length of database: 6,590,910
Effective search space: 1693863870
Effective search space used: 1693863870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)