RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14560
(355 letters)
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 308 bits (791), Expect = e-103
Identities = 116/180 (64%), Positives = 139/180 (77%), Gaps = 12/180 (6%)
Query: 13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 192
Query: 73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA Y SGK
Sbjct: 193 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 252
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
GP+++E+ TYRY GH MSDPG S+R DPI K++M+NS LA+V+ELKE
Sbjct: 253 GPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 312
Score = 130 bits (328), Expect = 7e-35
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 12/85 (14%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EAC VG+ A + D +I+AYR HG+T+ G+SV +L+ELTGR+ GC
Sbjct: 73 EACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGC------------ 120
Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQ 264
AKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 121 AKGKGGSMHMYAKNFYGGNGIVGAQ 145
Score = 109 bits (275), Expect = 2e-27
Identities = 39/70 (55%), Positives = 50/70 (71%)
Query: 276 RSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVI 335
S+A++ATFE K LH+L EGP +T++D L YYR MQT+RR+E A LYK+K+I
Sbjct: 3 GSFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKII 62
Query: 336 RGFCHLYSGQ 345
RGFCHL GQ
Sbjct: 63 RGFCHLCDGQ 72
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 196 bits (501), Expect = 4e-60
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 8 INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK 67
NF+ + + VP G A + + TG V +GDGA+++G + N A
Sbjct: 132 PGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAA 191
Query: 68 LWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD-Y-IPGIWVDGMDVLAVREASKFAV 125
+ G P +++ ENN Y + + S + + IPG VDGMDVLA K AV
Sbjct: 192 VQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAV 251
Query: 126 NYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELAT 174
A G+GP ++E+ YRY HS +D + +R DPI F+ + L
Sbjct: 252 ERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWN 311
Query: 175 VDELKE 180
+ ++
Sbjct: 312 EEWEED 317
Score = 61.1 bits (149), Expect = 1e-10
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 180 EACAVGMRAVMR-EQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
EA V + +R D + YR HG +G+ + +L ++ +
Sbjct: 74 EAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKAD------------ 121
Query: 239 CAKGKGGSMHMYAK--NFYGGNGIVGAQTL 266
KG+ H +K NF+ + +
Sbjct: 122 PNKGRQMPEHPGSKALNFFTVASPIASHVP 151
Score = 36.8 bits (86), Expect = 0.008
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 304 VTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
+ + YR M R L+ L + F +G
Sbjct: 33 LEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGH 73
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 183 bits (466), Expect = 5e-55
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 14/185 (7%)
Query: 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW 69
P N I+GAQ G+A + +G V GDG ++QG +E N A +
Sbjct: 132 PEGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAF 191
Query: 70 GIPCIYVCENNGYGMGTSAERSSASTDYYTRGD-Y-IPGIWVDGMDVLAVREASKFAVNY 127
P I+V +NN + + T E+ + + + IPGI VDGMD LAV A K A
Sbjct: 192 KAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARER 251
Query: 128 ASSGKGPLVLEVVTYRYSGHSMS--DPGT----------SFRDPITSFKEKMLNSELATV 175
A +G+GP ++E + +RY H+MS DP + +DP+ F++ + L +
Sbjct: 252 AINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSE 311
Query: 176 DELKE 180
+E
Sbjct: 312 EEENN 316
Score = 51.1 bits (123), Expect = 2e-07
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 19/87 (21%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EA + + ++D I+ YR G+ ++ G
Sbjct: 82 EASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGH---------------- 125
Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQTL 266
G + N I+GAQ +
Sbjct: 126 --FHGNQIP-EGVNVLPPQIIIGAQYI 149
Score = 34.5 bits (80), Expect = 0.044
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 297 GPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
++ + R+M R L+ + +L ++ + GF +GQ
Sbjct: 34 NEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQ 81
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 173 bits (440), Expect = 1e-50
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 14/201 (6%)
Query: 8 INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK 67
+ F+ +G + Q G A A+ KG + A GDGA+ + A A
Sbjct: 169 YSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAH 228
Query: 68 LWGIPCIYVCENNGYGMGTSAERSSASTD-YYTRGD-Y-IPGIWVDGMDVLAVREASKFA 124
++ P I NN + + T + + + RG I + VDG D +AV AS++A
Sbjct: 229 VYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWA 288
Query: 125 VNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELA 173
A G GP ++E VTYR HS SD + +R DPI K+ ++
Sbjct: 289 AERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHW 348
Query: 174 TVDELKEACAVGMRAVMREQD 194
+ +E + A AV+ Q
Sbjct: 349 SEEEHQATTAEFEAAVIAAQK 369
Score = 54.3 bits (131), Expect = 2e-08
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 14/89 (15%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EA G + D YR VS+ ++ +L
Sbjct: 112 EAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERD------------P 159
Query: 240 AKGKGGSMHMYAK--NFYGGNGIVGAQTL 266
KG+ + + F+ +G + Q +
Sbjct: 160 LKGRQLPIMYSVREAGFFTISGNLATQFV 188
Score = 28.9 bits (65), Expect = 2.5
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 304 VTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
+ Q R M R ++ ++K + F G+
Sbjct: 71 IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGE 111
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 172 bits (439), Expect = 1e-50
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 14/188 (7%)
Query: 8 INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK 67
++F + + Q+P G A+AA+ V +G+GA+++G +N A
Sbjct: 150 YGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAA 209
Query: 68 LWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD-Y-IPGIWVDGMDVLAVREASKFAV 125
P I+ C NNGY + T RG Y I I VDG DV AV A+K A
Sbjct: 210 TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEAR 269
Query: 126 NYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRD------------PITSFKEKMLNSELA 173
A + P ++E +TYR S SD ++FR PI+ + +L+
Sbjct: 270 RRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWW 329
Query: 174 TVDELKEA 181
++ K
Sbjct: 330 DEEQEKAW 337
Score = 53.8 bits (130), Expect = 3e-08
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 14/89 (15%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
E VG A + D + R G + +++ G +
Sbjct: 93 EGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD------------L 140
Query: 240 AKGKGGSMHMYAK--NFYGGNGIVGAQTL 266
KG+ +H K +F + + Q
Sbjct: 141 GKGRQMPVHYGCKERHFVTISSPLATQIP 169
Score = 27.3 bits (61), Expect = 7.8
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 297 GPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
PS + K+ L Y+ M + ++ ++ I + Y G+
Sbjct: 45 NPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GE 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.014
Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 71/237 (29%)
Query: 83 GMGTSAERSSAST-------DYYTRGDYIPGIWVDGMDVLA-VREASKFAVNYASSGKGP 134
GMG ++S + D + + Y G +L V + KG
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTY-------GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 135 LVLEVVTYRYSG---HSMSDPGTSFRDPITSFKEKMLNSELATV------DELKE----- 180
+ E YS ++ D G + I FKE +N + L
Sbjct: 1683 RIRE----NYSAMIFETIVD-GKLKTEKI--FKE--INEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 181 ----ACAVGMRAVMREQDSIISAYRV--H--G-WTYLMGVSVFGVLS-----ELTGRRTG 226
++ + I + H G + L S+ V+S E+ R
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL--ASLADVMSIESLVEVVFYR-- 1789
Query: 227 CAKGKGPISWECCAKGKGGSMH--MYAKNFYGGNGIVGA----QTLKSLLKSISGRS 277
G + + G + M A N G V A + L+ +++ + R+
Sbjct: 1790 -----GMTMQVAVPRDELGRSNYGMIAIN----PGRVAASFSQEALQYVVERVGKRT 1837
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.15
Identities = 5/16 (31%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 315 QMQTIRRLETSAGNLY 330
+ Q +++L+ S LY
Sbjct: 18 EKQALKKLQASL-KLY 32
Score = 31.5 bits (70), Expect = 0.19
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 10/30 (33%)
Query: 264 QTLKSLLKSISGRSYASE--------ATFE 285
Q LK L S+ + YA + AT E
Sbjct: 20 QALKKLQASL--KLYADDSAPALAIKATME 47
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 32.5 bits (75), Expect = 0.23
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 29 GTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYN 64
G GIA AA+ +G + GDGA G FEA N
Sbjct: 130 GIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMN 165
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 31.7 bits (73), Expect = 0.35
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 31 GIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYN 64
G+A A +G A+ GDG+ G A N
Sbjct: 134 GMALARDAQGKDFHVAAVIGDGSLTGGMALAALN 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.64
Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 65 IAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVD------GMDVL--A 116
++ +W + + S IP I+++ L +
Sbjct: 392 LSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 117 VREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPITSFKEKMLN 169
+ + + S P L+ Y + GH + + + +T F+ L+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVFLD 499
Score = 28.7 bits (63), Expect = 3.6
Identities = 36/278 (12%), Positives = 68/278 (24%), Gaps = 95/278 (34%)
Query: 105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPI--TS 162
+ +DG+ SGK + L+V I +
Sbjct: 151 KNVLIDGV---------------LGSGKTWVALDVC-------LSYKVQCKMDFKIFWLN 188
Query: 163 FKE--------KMLNSELATVDELKEACAVGMRAVMREQDSIISAYR--VHGWTY----- 207
K +ML L +D + + + SI + R + Y
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 208 -LMGVS------VFG----VLSELTGRRTGCA-----KGKGPISWECCAKG--KGGSMHM 249
L+ V F +L LT R IS + + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 250 YAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKL----HKLSEGPSNKVTVT 305
K + Q L + + + P +L + +G +
Sbjct: 307 LLK-YLD----CRPQDLPREVLTTN-------------PRRLSIIAESIRDGLA------ 342
Query: 306 KQDALLYYRQMQTIRRLETSAGNL--------YKEKVI 335
D + + +E+S L + +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 31.0 bits (70), Expect = 0.65
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 27/139 (19%)
Query: 17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW-----GI 71
G NGI G + + + GT + GD + F +++ L GI
Sbjct: 453 GANGIDGV---VSSAMGVCE---GTKAPVTLVIGDLS------F-YHDLNGLLAAKKLGI 499
Query: 72 PC-IYVCENNGYG---MGTSAERSSASTDYY-TRGDYIPGIWVD--GMDVLAVREASKF- 123
P + + N+G G A + D + T G +F
Sbjct: 500 PLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEFK 559
Query: 124 -AVNYASSGKGPLVLEVVT 141
A + G ++E+ T
Sbjct: 560 TAYAPQADKPGLHLIEIKT 578
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 29.5 bits (66), Expect = 1.6
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 258 NGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQ 317
GI + + +++ SG + T K +L + +Q+ +Y Q +
Sbjct: 94 MGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNK 153
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar
kinases, HSC70, superfamily; 1.90A {Escherichia coli}
SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Length = 513
Score = 28.8 bits (65), Expect = 3.5
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 162 SFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVS 212
SF + + + + A A ++ +++ +R+ GW MG S
Sbjct: 171 SFAQLYFPGGVINKENFQRA----RMAAAQKLETLTWQFRIQGWNVAMGAS 217
>3uws_B Hypothetical protein; clostripain family protein, peptidase_C11,
structural genomi center for structural genomics, JCSG;
HET: MSE; 1.70A {Parabacteroides merdae}
Length = 228
Score = 27.8 bits (61), Expect = 4.8
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Query: 90 RSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY----RYS 145
+ Y DYI + AV Y + + Y
Sbjct: 140 LYRSPGMLYDFNDYIKQL-ATAEQYDRFISCLDKAVVYKAHTPKSYYAAIGNALPIKSYC 198
Query: 146 GHSMSDPGTSFRDPITSFKEKM 167
G ++ P S + +K+++
Sbjct: 199 GLTIFVPQESLPKMLEWYKQRV 220
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Length = 315
Score = 27.1 bits (61), Expect = 7.9
Identities = 6/51 (11%), Positives = 12/51 (23%), Gaps = 4/51 (7%)
Query: 162 SFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVS 212
++ + D+ + A T L+G S
Sbjct: 165 RLIDRFHVHDPMREDDRVMM----HNYFDEVLVPLEKAINTWRPTQLIGCS 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,409,759
Number of extensions: 318443
Number of successful extensions: 622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 27
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)