RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14560
(355 letters)
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 121 bits (305), Expect = 3e-32
Identities = 115/192 (59%), Positives = 141/192 (73%), Gaps = 12/192 (6%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
+ ++ KNFYGGNGIVGAQVPLG GIA A +Y G VC LYGDGA+NQGQ F
Sbjct: 117 AKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIF 176
Query: 61 EAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREA 120
EAYN+A LW +PCI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA
Sbjct: 177 EAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREA 236
Query: 121 SKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKML 168
++FA Y SGKGP+++E+ TYRY GH MSDPG S+ DPI K++M+
Sbjct: 237 TRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMV 296
Query: 169 NSELATVDELKE 180
NS LA+V+ELKE
Sbjct: 297 NSNLASVEELKE 308
Score = 101 bits (251), Expect = 9e-25
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
+A++ATFE K LH+L EGP +T++D L YYR MQT+RR+E A LYK+K+IRG
Sbjct: 1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 60
Query: 338 FCHLYSGQ 345
FCHL GQ
Sbjct: 61 FCHLCDGQ 68
Score = 52.6 bits (125), Expect = 3e-08
Identities = 49/85 (57%), Positives = 58/85 (68%), Gaps = 12/85 (14%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EAC VG+ A + D +I+AYR HG+T+ G+SV +L+ELTGR C
Sbjct: 69 EACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGR------------KGGC 116
Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQ 264
AKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 117 AKGKGGSMHMYAKNFYGGNGIVGAQ 141
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 89.6 bits (221), Expect = 1e-20
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
NF+ + + VP G A + + TG V +GDGA+++G + N A + G
Sbjct: 131 ALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGA 190
Query: 72 PCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYAS 129
P +++ ENN Y + + S + IPG VDGMDVLA K AV A
Sbjct: 191 PAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERAR 250
Query: 130 SGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELATVDEL 178
G+GP ++E+ YRY HS +D + +R DPI F+ + L +
Sbjct: 251 RGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWE 310
Query: 179 KE 180
++
Sbjct: 311 ED 312
Score = 53.0 bits (126), Expect = 2e-08
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 302 VTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
+ + + YR M R L+ L + F +G
Sbjct: 26 LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGH 68
Score = 41.0 bits (95), Expect = 1e-04
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 180 EACAVGMRAVMR-EQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
EA V + +R D + YR HG +G+ + +L ++ + KG+
Sbjct: 69 EAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEH-- 126
Query: 239 CAKGKGGSMHMYAKNFYGGNGIVGAQT 265
A NF+ + +
Sbjct: 127 --------PGSKALNFFTVASPIASHV 145
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 86.8 bits (214), Expect = 1e-19
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 14/183 (7%)
Query: 12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
F+ +G + Q G A A+ KG + A GDGA+ + A A ++
Sbjct: 173 EAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRA 232
Query: 72 PCIYVCENNGYGMGTSAERSSASTDYYTR---GDYIPGIWVDGMDVLAVREASKFAVNYA 128
P I NN + + T + + + G I + VDG D +AV AS++A A
Sbjct: 233 PVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERA 292
Query: 129 SSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELATVDE 177
G GP ++E VTYR HS SD + +R DPI K+ ++ + +E
Sbjct: 293 RRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEE 352
Query: 178 LKE 180
+
Sbjct: 353 HQA 355
Score = 53.3 bits (127), Expect = 2e-08
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EA G + D YR VS+ ++ +L KG+
Sbjct: 112 EAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSV 171
Score = 44.5 bits (104), Expect = 1e-05
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 304 VTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
+ Q R M R ++ ++K + F G+
Sbjct: 71 IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGE 111
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 86.1 bits (212), Expect = 2e-19
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW 69
P N I+GAQ G+A + +G V GDG ++QG +E N A +
Sbjct: 129 PEGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAF 188
Query: 70 GIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNY 127
P I+V +NN + + T E+ + + + IPGI VDGMD LAV A K A
Sbjct: 189 KAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARER 248
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATV 175
A +G+GP ++E + +RY H+MS + +DP+ F++ + L +
Sbjct: 249 AINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSE 308
Query: 176 DELKE 180
+E
Sbjct: 309 EEENN 313
Score = 54.9 bits (131), Expect = 4e-09
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 297 GPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
++ + R+M R L+ + +L ++ + GF +GQ
Sbjct: 31 NEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQ 78
Score = 49.5 bits (117), Expect = 3e-07
Identities = 10/72 (13%), Positives = 20/72 (27%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
EA + + ++D I+ YR G+ ++ G G +G
Sbjct: 79 EASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQ 138
Query: 240 AKGKGGSMHMYA 251
+
Sbjct: 139 IIIGAQYIQAAG 150
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 81.4 bits (200), Expect = 9e-18
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 14/181 (7%)
Query: 14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
+F + + Q+P G A+AA+ V +G+GA+++G +N A P
Sbjct: 151 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPI 210
Query: 74 IYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASKFAVNYASSG 131
I+ C NNGY + T RG I I VDG DV AV A+K A A +
Sbjct: 211 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAE 270
Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELK 179
P ++E +TYR S SD ++FR PI+ + +L+ ++ K
Sbjct: 271 NQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK 330
Query: 180 E 180
Sbjct: 331 A 331
Score = 57.2 bits (137), Expect = 9e-10
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 297 GPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
PS + K+ L Y+ M + ++ ++ I + Y G+
Sbjct: 40 NPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GE 87
Score = 46.4 bits (109), Expect = 3e-06
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
E VG A + D + R G + +++ G + KG+
Sbjct: 88 EGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVH--- 144
Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQT 265
++F + + Q
Sbjct: 145 -------YGCKERHFVTISSPLATQI 163
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 183
Score = 31.5 bits (70), Expect = 0.081
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 32 IAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-----GMGT 86
+ A + + G + + A A + IP I+V NNG
Sbjct: 66 LPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAG 125
Query: 87 SAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKF--AVNYASSGKGPLVLEVVT 141
E + D+ G+ L + ++ A S KGP+++EV T
Sbjct: 126 VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 182
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 196
Score = 31.4 bits (70), Expect = 0.11
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 13/140 (9%)
Query: 10 PSPKNFY--GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK 67
P+ NF G +G + G A + + + Q E ++ +
Sbjct: 41 PADVNFIVQPLWGSIGYTLAAAFGAQTACPNR-----RVIVLTGDGAAQLTIQELGSMLR 95
Query: 68 LWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAV------REAS 121
P I V N GY + + + + ++ +D + E
Sbjct: 96 DKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQL 155
Query: 122 KFAVNYASSGKGPLVLEVVT 141
+ + + ++EV+
Sbjct: 156 ADVLEKVAHHERLSLIEVML 175
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 27.9 bits (61), Expect = 1.5
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
+ +++ Y N I GA + +A G A G GQ
Sbjct: 100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISA----RRGEFEA----GFERGGQTR 151
Query: 61 EAYNIAKLWGIPCIYVC 77
E +A+ GI + V
Sbjct: 152 EHAVLARTQGINHLVVV 168
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 27.6 bits (61), Expect = 2.3
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 39 KGTGGVCFALYGDGA------SNQGQNFEAYNIAKLWGIPC 73
KGT G+ F G +N + G+
Sbjct: 79 KGTEGLFFVETESGVFIVKRSTNIESETFCSLLCMRLGLHA 119
>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 361
Score = 27.5 bits (60), Expect = 2.6
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 70 GIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVRE 119
G P I+ + + D+ G ++ D +++ VR
Sbjct: 308 GQPVIFYRDFEEWLNKDKLINLIWIHDHLAGGSTTI-VYYDNDELIFVRN 356
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 206
Score = 25.7 bits (55), Expect = 8.2
Identities = 13/156 (8%), Positives = 37/156 (23%), Gaps = 6/156 (3%)
Query: 87 SAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG 146
S ++ASTD+ +P + + A + + +R G
Sbjct: 12 SNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYT------IAFRGRG 65
Query: 147 HSMSDPGTSFRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWT 206
HS+ + + + + ++ + V D + ++
Sbjct: 66 HSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAP 125
Query: 207 YLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKG 242
++ + +
Sbjct: 126 RSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLE 161
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 25.7 bits (56), Expect = 8.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 AYNIAKLWGIPCIYVCENNGYGMGTSAE 89
A+ GIP IY+ N+G +G + E
Sbjct: 126 VTEYARKRGIPRIYLAANSGARIGMAEE 153
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD
{Aquifex aeolicus [TaxId: 63363]}
Length = 182
Score = 25.4 bits (54), Expect = 9.5
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 8/26 (30%)
Query: 23 GAQV--------PLGTGIAFAAQYKG 40
GAQV P+GTGI +G
Sbjct: 5 GAQVGQLLILTKPIGTGILIKGLKEG 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,317,552
Number of extensions: 58726
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 23
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)