BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14566
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 69/264 (26%)
Query: 93 MTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLF---PSIHGN 149
++E + KI ++++D + + SS+ PSI+G+ ++K + L +LF P + +
Sbjct: 268 ISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELK------EALALALFGGVPKVLED 321
Query: 150 EQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQL 209
+I+ D ++ I G+ K+++L Q + +A + TT +
Sbjct: 322 TRIRGDIHIL----------IIGDPGTAKSQML--------QFISRVAPRAVY--TTGKG 361
Query: 210 ESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCC 269
+ L+ A+ + + EY + AL+LAD G+
Sbjct: 362 STAAGLTAAVVREKGTGEYYLEAG-------------------------ALVLADGGIAV 396
Query: 270 IDEFDNL---------------SVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQH 314
IDE D + +V+ +KAG+ A LNARA+++AA NP G+Y + +
Sbjct: 397 IDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSD 456
Query: 315 NVSLSAPIMSRFDLFFVLIDECNE 338
N++L I+SRFDL F+L D+ E
Sbjct: 457 NINLPPTILSRFDLIFILKDQPGE 480
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 54/229 (23%)
Query: 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRL 60
+LAD G+ IDE DKM D+VAIHEAMEQQT+SIAK + V LN R
Sbjct: 388 VLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGI------------VAKLNARA 435
Query: 61 AFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSL-F 119
A +A NP+FG ++++E +S + NL + S
Sbjct: 436 AVIAAG----NPKFG---------------RYISER------PVSDNINLPPTILSRFDL 470
Query: 120 PSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKD------RNLYQNLTSSLFPSIHGN 173
I ++ ++DR L ++ +H + K R + P I
Sbjct: 471 IFILKDQPGEQDREL-----ANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSE 525
Query: 174 EQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKM 222
+ L+ D + ++R++ + IT RQLE+LIR+SEA AKM
Sbjct: 526 AK----NLITDFFVEMRKKSSETPDSPIL-ITPRQLEALIRISEAYAKM 569
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 383 YDRTKSLQHNVSLSAPIMSRFDLFFVLIDE--------CNEILDYGLHKSEVVAWYLEQI 434
Y + + N++L I+SRFDL F+L D+ N ILD KS ++ +
Sbjct: 448 YISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTL 507
Query: 435 GDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQL 494
I RK V K+ A L+ D + ++R++ + IT RQL
Sbjct: 508 RKYIA-----YARKYVTPKITSE-----AKNLITDFFVEMRKKSSETPDSPIL-ITPRQL 556
Query: 495 ESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKKV 532
E+LIR+SEA AKM E+ + N+ +L + V
Sbjct: 557 EALIRISEAYAKMALKAEVTREDAERAINIMRLFLESV 594
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 259 ALMLADNGVCCIDEFDNLSVTSSKAGVRA-----------TLNARASILAAANPIGGQYD 307
A +LAD G+ +D + A + A LNAR ++LAA NP G Q+
Sbjct: 295 AAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP-GEQWP 353
Query: 308 RTKSLQHNVSLSAPIMSRFDLF-FVLID 334
+ + L +S FDL F+ +D
Sbjct: 354 SDPPIA-RIDLDQDFLSHFDLIAFLGVD 380
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 201 TWRITTRQLESLIRLSEAMAKMECLDEYEFDKMD 234
T +T RQLES+ RL++A A+M D+ E + +D
Sbjct: 444 TLPVTRRQLESVERLAKAHARMRLSDDVEPEDVD 477
>pdb|2KLQ|A Chain A, The Solution Structure Of Cbd Of Human Mcm6
pdb|2LE8|A Chain A, The Protein Complex For Dna Replication
Length = 114
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 33/42 (78%)
Query: 420 GLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYH 461
L +SE+V WYL++I +I++EEEL+ +K ++EKVI RL ++
Sbjct: 35 ALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHY 76
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 11/53 (20%)
Query: 420 GLHKSEVVAWYLEQIGDQIENEEELLE---RKTVVE-------KVIERLIYHG 462
G+H+ E+V W+++ GD++ ++ L E K VVE KV+E L+ G
Sbjct: 12 GIHEGEIVKWFVKP-GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 63
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 11/53 (20%)
Query: 420 GLHKSEVVAWYLEQIGDQIENEEELLE---RKTVVE-------KVIERLIYHG 462
G+H+ E+V W+++ GD++ ++ L E K VVE KV+E L+ G
Sbjct: 13 GIHEGEIVKWFVKP-GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,494,039
Number of Sequences: 62578
Number of extensions: 552616
Number of successful extensions: 1526
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1510
Number of HSP's gapped (non-prelim): 26
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)