Query psy14566
Match_columns 532
No_of_seqs 234 out of 1794
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:07:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0480|consensus 100.0 1.2E-87 2.6E-92 708.5 16.5 387 11-530 233-645 (764)
2 KOG0479|consensus 100.0 1.1E-79 2.3E-84 640.8 17.7 403 10-525 221-642 (818)
3 COG1241 MCM2 Predicted ATPase 100.0 1.1E-77 2.5E-82 656.4 18.8 376 7-526 200-593 (682)
4 KOG0481|consensus 100.0 1.5E-72 3.3E-77 580.4 17.4 314 93-529 304-637 (729)
5 KOG0478|consensus 100.0 3.9E-71 8.4E-76 587.4 14.6 372 7-529 333-722 (804)
6 KOG0482|consensus 100.0 1.2E-71 2.6E-76 573.3 8.8 363 13-526 262-639 (721)
7 KOG0477|consensus 100.0 8.1E-71 1.7E-75 577.9 11.9 376 8-525 364-757 (854)
8 PF00493 MCM: MCM2/3/5 family 100.0 6.4E-68 1.4E-72 548.7 2.7 309 99-526 3-327 (331)
9 PTZ00111 DNA replication licen 100.0 1.1E-63 2.4E-68 557.1 18.7 404 8-526 351-805 (915)
10 smart00350 MCM minichromosome 100.0 3.2E-55 6.9E-60 478.1 19.2 377 8-525 109-504 (509)
11 KOG0480|consensus 100.0 8.2E-46 1.8E-50 391.7 2.9 201 1-253 439-651 (764)
12 COG1241 MCM2 Predicted ATPase 100.0 6.1E-43 1.3E-47 383.3 4.5 214 1-259 380-606 (682)
13 KOG0481|consensus 100.0 6.9E-42 1.5E-46 353.7 6.0 200 1-242 425-639 (729)
14 KOG0479|consensus 100.0 1.8E-41 4E-46 354.7 5.9 211 1-242 395-642 (818)
15 KOG0482|consensus 100.0 1.6E-40 3.6E-45 343.2 6.4 200 1-253 436-646 (721)
16 KOG0477|consensus 100.0 3.9E-40 8.5E-45 346.9 1.7 215 1-253 543-770 (854)
17 KOG0478|consensus 100.0 2E-39 4.3E-44 345.7 6.6 199 1-250 523-733 (804)
18 PF00493 MCM: MCM2/3/5 family 100.0 6.6E-37 1.4E-41 317.2 -4.6 198 1-243 118-327 (331)
19 PTZ00111 DNA replication licen 100.0 5.6E-34 1.2E-38 319.2 7.3 222 1-259 554-818 (915)
20 smart00350 MCM minichromosome 99.9 5.8E-27 1.3E-31 256.1 4.5 197 1-242 297-504 (509)
21 TIGR00368 Mg chelatase-related 99.3 1.1E-11 2.4E-16 135.0 13.8 91 217-337 293-393 (499)
22 TIGR02442 Cob-chelat-sub cobal 99.3 1.2E-11 2.7E-16 139.0 14.3 172 219-520 126-299 (633)
23 TIGR02031 BchD-ChlD magnesium 99.2 3.6E-11 7.7E-16 133.9 12.3 219 168-521 19-254 (589)
24 PRK09862 putative ATP-dependen 99.2 1.4E-10 3E-15 126.1 12.3 92 215-336 290-389 (506)
25 TIGR02030 BchI-ChlI magnesium 99.0 4.9E-09 1.1E-13 109.1 14.5 62 447-520 241-304 (337)
26 CHL00081 chlI Mg-protoporyphyr 98.8 5E-08 1.1E-12 101.8 11.5 174 217-520 142-317 (350)
27 PRK13407 bchI magnesium chelat 98.5 1.2E-06 2.5E-11 91.2 12.8 51 457-519 250-300 (334)
28 TIGR00368 Mg chelatase-related 98.4 1.4E-07 2.9E-12 103.2 4.1 81 2-104 293-388 (499)
29 TIGR00764 lon_rel lon-related 98.4 1.1E-06 2.3E-11 98.7 10.1 168 215-521 213-387 (608)
30 PRK09862 putative ATP-dependen 98.3 2.9E-07 6.3E-12 100.4 3.2 81 2-104 292-385 (506)
31 PF01078 Mg_chelatase: Magnesi 98.2 2.7E-06 6E-11 82.1 6.3 75 260-334 102-201 (206)
32 PRK13531 regulatory ATPase Rav 98.2 3.7E-05 8.1E-10 83.1 15.5 224 167-521 41-280 (498)
33 PRK13406 bchD magnesium chelat 98.0 7.3E-05 1.6E-09 83.4 14.1 127 168-335 28-169 (584)
34 COG1239 ChlI Mg-chelatase subu 98.0 0.00011 2.4E-09 77.4 13.6 69 450-530 257-327 (423)
35 TIGR02442 Cob-chelat-sub cobal 97.8 2E-05 4.4E-10 89.0 5.3 176 2-239 124-301 (633)
36 TIGR02640 gas_vesic_GvpN gas v 97.8 0.0002 4.4E-09 72.2 11.2 80 222-338 108-187 (262)
37 TIGR02031 BchD-ChlD magnesium 97.7 4.4E-05 9.6E-10 85.5 5.5 173 2-240 82-256 (589)
38 COG0714 MoxR-like ATPases [Gen 97.7 0.0003 6.6E-09 73.2 11.3 176 221-520 114-291 (329)
39 PF07726 AAA_3: ATPase family 97.6 6.5E-05 1.4E-09 67.2 4.6 119 167-326 1-129 (131)
40 PF07728 AAA_5: AAA domain (dy 97.4 0.00011 2.4E-09 66.2 3.1 119 168-326 2-139 (139)
41 TIGR01650 PD_CobS cobaltochela 97.2 0.0057 1.2E-07 63.4 12.9 135 168-340 67-224 (327)
42 TIGR02030 BchI-ChlI magnesium 97.1 0.00053 1.2E-08 71.6 4.6 58 3-76 130-187 (337)
43 CHL00181 cbbX CbbX; Provisiona 96.8 0.0064 1.4E-07 62.3 9.8 24 166-190 60-83 (287)
44 PF01078 Mg_chelatase: Magnesi 96.7 0.00098 2.1E-08 64.6 2.3 61 2-78 104-164 (206)
45 COG0606 Predicted ATPase with 96.6 0.00085 1.8E-08 71.9 1.7 89 243-334 265-378 (490)
46 CHL00081 chlI Mg-protoporyphyr 96.3 0.0023 5.1E-08 67.1 2.9 59 2-76 142-200 (350)
47 TIGR00764 lon_rel lon-related 96.2 0.004 8.8E-08 70.1 3.8 37 2-38 215-251 (608)
48 PRK13765 ATP-dependent proteas 96.1 0.02 4.4E-07 64.6 9.2 61 455-521 336-396 (637)
49 PRK10787 DNA-binding ATP-depen 96.1 0.0072 1.6E-07 70.0 5.4 118 168-329 352-488 (784)
50 TIGR02880 cbbX_cfxQ probable R 95.9 0.023 5.1E-07 58.0 7.7 53 452-512 208-260 (284)
51 PRK13407 bchI magnesium chelat 95.9 0.0058 1.3E-07 63.9 3.2 57 2-74 126-182 (334)
52 PHA02244 ATPase-like protein 95.6 0.022 4.7E-07 60.1 6.1 50 284-337 213-262 (383)
53 TIGR02902 spore_lonB ATP-depen 95.5 0.2 4.3E-06 55.8 13.7 54 453-529 277-330 (531)
54 cd00009 AAA The AAA+ (ATPases 95.0 0.022 4.8E-07 50.0 3.5 59 263-332 83-149 (151)
55 PF05496 RuvB_N: Holliday junc 94.9 0.056 1.2E-06 53.2 6.3 114 167-330 52-174 (233)
56 TIGR02881 spore_V_K stage V sp 94.9 0.19 4E-06 50.6 10.3 49 456-510 195-243 (261)
57 PRK13406 bchD magnesium chelat 94.2 0.019 4.1E-07 64.4 1.3 76 2-104 91-166 (584)
58 PF00004 AAA: ATPase family as 93.5 0.028 6.1E-07 49.3 0.8 55 265-332 59-130 (132)
59 TIGR02974 phageshock_pspF psp 93.3 0.098 2.1E-06 54.6 4.6 34 457-505 200-233 (329)
60 PRK00080 ruvB Holliday junctio 92.6 0.31 6.7E-06 50.7 7.2 126 168-338 54-182 (328)
61 TIGR00635 ruvB Holliday juncti 92.6 0.12 2.6E-06 52.9 4.1 76 168-251 33-111 (305)
62 PHA02244 ATPase-like protein 92.6 0.12 2.5E-06 54.7 3.9 70 2-89 178-250 (383)
63 TIGR00763 lon ATP-dependent pr 92.0 0.1 2.3E-06 60.7 3.1 23 167-189 349-371 (775)
64 PF07728 AAA_5: AAA domain (dy 92.0 0.064 1.4E-06 48.1 1.0 36 4-39 65-100 (139)
65 PRK11608 pspF phage shock prot 91.7 0.32 7E-06 50.7 6.0 35 456-505 206-240 (326)
66 COG1239 ChlI Mg-chelatase subu 91.3 0.21 4.5E-06 53.2 4.1 58 3-76 143-200 (423)
67 TIGR02640 gas_vesic_GvpN gas v 91.2 0.13 2.8E-06 51.8 2.4 36 3-38 104-139 (262)
68 COG0606 Predicted ATPase with 90.4 0.15 3.2E-06 55.1 2.0 62 1-78 280-341 (490)
69 smart00382 AAA ATPases associa 90.4 0.47 1E-05 40.8 4.9 55 266-332 80-144 (148)
70 PF07726 AAA_3: ATPase family 90.2 0.22 4.9E-06 44.8 2.7 51 5-73 63-113 (131)
71 PRK10865 protein disaggregatio 89.2 0.4 8.6E-06 56.5 4.5 62 267-338 274-343 (857)
72 TIGR01817 nifA Nif-specific re 89.2 0.64 1.4E-05 51.7 6.0 36 456-506 394-429 (534)
73 PF07724 AAA_2: AAA domain (Cd 88.8 0.15 3.1E-06 48.2 0.5 35 4-38 68-113 (171)
74 TIGR03345 VI_ClpV1 type VI sec 87.8 0.53 1.2E-05 55.4 4.3 67 265-341 281-355 (852)
75 TIGR02639 ClpA ATP-dependent C 87.6 0.6 1.3E-05 54.1 4.5 83 220-334 554-648 (731)
76 PF12775 AAA_7: P-loop contain 87.1 1.1 2.4E-05 45.5 5.6 24 166-189 34-57 (272)
77 PF00158 Sigma54_activat: Sigm 86.5 0.56 1.2E-05 44.1 2.9 34 2-35 91-124 (168)
78 PRK05342 clpX ATP-dependent pr 86.4 1.2 2.6E-05 48.1 5.6 82 167-253 110-219 (412)
79 COG0714 MoxR-like ATPases [Gen 86.2 0.73 1.6E-05 47.9 3.9 50 6-73 114-164 (329)
80 TIGR02903 spore_lon_C ATP-depe 85.5 2.6 5.6E-05 47.9 8.1 21 167-187 177-197 (615)
81 TIGR02329 propionate_PrpR prop 84.8 3.7 8E-05 45.7 8.7 41 457-505 410-450 (526)
82 PRK15424 propionate catabolism 84.3 7.4 0.00016 43.5 10.8 46 451-504 419-464 (538)
83 CHL00195 ycf46 Ycf46; Provisio 82.5 2.5 5.3E-05 46.7 6.1 62 265-340 319-396 (489)
84 TIGR01650 PD_CobS cobaltochela 82.1 1.2 2.7E-05 46.3 3.4 37 3-39 133-170 (327)
85 CHL00095 clpC Clp protease ATP 81.5 4.7 0.0001 47.5 8.3 31 221-253 613-643 (821)
86 TIGR03689 pup_AAA proteasome A 81.4 2.8 6E-05 46.5 6.0 63 267-343 292-372 (512)
87 COG0466 Lon ATP-dependent Lon 81.2 1.5 3.3E-05 49.6 3.9 120 168-329 353-490 (782)
88 PRK11034 clpA ATP-dependent Cl 80.0 1.5 3.3E-05 50.9 3.5 82 221-334 559-652 (758)
89 PF00158 Sigma54_activat: Sigm 79.5 8.8 0.00019 36.0 8.0 42 260-301 89-143 (168)
90 COG2204 AtoC Response regulato 79.0 2.8 6E-05 45.8 4.9 130 141-301 142-285 (464)
91 TIGR03346 chaperone_ClpB ATP-d 77.9 2.3 4.9E-05 50.3 4.2 81 222-334 670-762 (852)
92 TIGR03345 VI_ClpV1 type VI sec 77.5 2.3 4.9E-05 50.2 4.0 78 222-332 671-764 (852)
93 PRK13342 recombination factor 77.4 1.3 2.8E-05 47.7 1.8 20 167-186 38-57 (413)
94 PRK05342 clpX ATP-dependent pr 76.8 1.4 3E-05 47.6 1.8 36 3-38 172-221 (412)
95 COG3829 RocR Transcriptional r 76.7 2.4 5.2E-05 46.7 3.6 119 153-302 255-391 (560)
96 TIGR01242 26Sp45 26S proteasom 76.5 1.2 2.6E-05 47.0 1.3 36 489-530 327-362 (364)
97 PRK10820 DNA-binding transcrip 76.2 6 0.00013 44.0 6.7 34 456-504 403-436 (520)
98 TIGR00382 clpX endopeptidase C 74.5 3.3 7.2E-05 44.6 4.0 18 167-184 118-135 (413)
99 PLN03025 replication factor C 73.7 4.7 0.0001 41.7 4.8 23 167-189 36-58 (319)
100 KOG2004|consensus 73.6 1.3 2.9E-05 50.1 0.8 121 168-329 441-578 (906)
101 PRK03992 proteasome-activating 73.3 2.9 6.3E-05 44.7 3.2 18 168-185 168-185 (389)
102 PTZ00454 26S protease regulato 73.1 2.1 4.5E-05 46.0 2.0 17 168-184 182-198 (398)
103 PF12774 AAA_6: Hydrolytic ATP 72.9 5.8 0.00013 39.3 5.0 124 153-326 20-159 (231)
104 PRK07003 DNA polymerase III su 71.7 12 0.00025 43.5 7.5 22 168-189 41-62 (830)
105 TIGR00382 clpX endopeptidase C 71.3 2.3 5E-05 45.8 1.9 34 3-36 180-227 (413)
106 PF07724 AAA_2: AAA domain (Cd 71.0 5.2 0.00011 37.6 4.0 75 222-329 71-171 (171)
107 COG2255 RuvB Holliday junction 70.5 6.1 0.00013 40.4 4.5 129 167-336 54-182 (332)
108 smart00763 AAA_PrkA PrkA AAA d 69.6 3.2 7E-05 43.8 2.5 54 2-73 234-287 (361)
109 PRK05201 hslU ATP-dependent pr 68.4 1.6 3.4E-05 47.2 -0.2 32 4-35 249-292 (443)
110 PRK14956 DNA polymerase III su 66.9 5 0.00011 44.1 3.3 22 168-189 43-64 (484)
111 PHA02544 44 clamp loader, smal 66.7 12 0.00025 38.4 5.9 54 263-329 99-155 (316)
112 PRK07940 DNA polymerase III su 65.9 3.8 8.2E-05 44.0 2.1 22 168-189 39-60 (394)
113 PLN00020 ribulose bisphosphate 65.9 15 0.00033 39.2 6.5 34 290-339 266-301 (413)
114 TIGR01243 CDC48 AAA family ATP 63.4 14 0.0003 43.0 6.3 60 266-339 548-625 (733)
115 PRK10733 hflB ATP-dependent me 62.8 8.7 0.00019 44.0 4.4 59 266-338 246-324 (644)
116 TIGR02974 phageshock_pspF psp 62.8 5.3 0.00011 41.7 2.5 33 2-34 91-123 (329)
117 TIGR00390 hslU ATP-dependent p 61.7 2.5 5.4E-05 45.6 -0.2 33 3-35 246-290 (441)
118 TIGR01241 FtsH_fam ATP-depende 61.4 4.4 9.6E-05 44.7 1.7 17 168-184 91-107 (495)
119 PRK10787 DNA-binding ATP-depen 61.2 5.8 0.00013 46.4 2.7 31 5-35 417-452 (784)
120 KOG2545|consensus 60.4 18 0.00039 38.8 5.8 79 444-530 462-540 (543)
121 PRK07994 DNA polymerase III su 59.8 13 0.00028 42.5 5.0 22 168-189 41-62 (647)
122 TIGR02902 spore_lonB ATP-depen 59.7 4.9 0.00011 44.9 1.7 35 2-36 173-207 (531)
123 PRK00411 cdc6 cell division co 59.3 11 0.00023 40.0 4.1 24 168-191 58-81 (394)
124 TIGR02639 ClpA ATP-dependent C 57.3 7.4 0.00016 45.2 2.7 33 4-36 553-585 (731)
125 PRK10365 transcriptional regul 57.1 5.6 0.00012 42.7 1.6 33 2-34 231-263 (441)
126 PRK11608 pspF phage shock prot 57.0 8 0.00017 40.3 2.7 33 2-34 98-130 (326)
127 PRK05563 DNA polymerase III su 56.8 52 0.0011 37.1 9.2 22 168-189 41-62 (559)
128 CHL00176 ftsH cell division pr 56.8 7.8 0.00017 44.2 2.7 18 167-184 218-235 (638)
129 PHA01747 putative ATP-dependen 56.0 17 0.00036 38.7 4.7 130 167-331 192-340 (425)
130 PRK14962 DNA polymerase III su 55.2 13 0.00029 40.8 4.1 22 168-189 39-60 (472)
131 PRK13765 ATP-dependent proteas 54.8 6.4 0.00014 44.9 1.6 35 2-36 224-258 (637)
132 COG2204 AtoC Response regulato 54.5 10 0.00022 41.5 2.9 33 2-34 233-265 (464)
133 PRK13531 regulatory ATPase Rav 54.1 10 0.00022 41.8 2.9 44 7-64 110-153 (498)
134 PTZ00361 26 proteosome regulat 53.5 7.4 0.00016 42.3 1.8 18 168-185 220-237 (438)
135 PRK11034 clpA ATP-dependent Cl 53.1 7.6 0.00017 45.2 1.9 33 4-36 557-589 (758)
136 PRK06851 hypothetical protein; 52.0 17 0.00038 38.6 4.2 39 153-191 200-240 (367)
137 PF13337 Lon_2: Putative ATP-d 51.4 39 0.00084 36.9 6.7 93 167-302 210-311 (457)
138 PRK14949 DNA polymerase III su 51.4 18 0.00039 42.7 4.5 23 168-190 41-63 (944)
139 COG1067 LonB Predicted ATP-dep 51.0 82 0.0018 36.1 9.5 65 455-531 335-399 (647)
140 TIGR01243 CDC48 AAA family ATP 50.6 9 0.00019 44.5 1.9 18 168-185 215-232 (733)
141 KOG0745|consensus 50.2 7.4 0.00016 42.0 1.1 37 3-39 290-340 (564)
142 TIGR02915 PEP_resp_reg putativ 49.9 17 0.00036 39.2 3.8 26 165-191 162-187 (445)
143 PF13558 SbcCD_C: Putative exo 49.3 9.9 0.00021 31.7 1.5 25 6-30 65-90 (90)
144 TIGR03346 chaperone_ClpB ATP-d 48.7 12 0.00026 44.2 2.7 33 5-37 668-700 (852)
145 COG0470 HolB ATPase involved i 48.7 10 0.00022 38.6 1.9 22 168-189 27-48 (325)
146 TIGR02915 PEP_resp_reg putativ 48.6 15 0.00032 39.6 3.2 32 3-34 232-263 (445)
147 PRK05707 DNA polymerase III su 48.5 13 0.00027 39.0 2.5 29 217-247 104-132 (328)
148 TIGR01817 nifA Nif-specific re 48.1 15 0.00032 40.9 3.1 33 2-34 288-320 (534)
149 smart00763 AAA_PrkA PrkA AAA d 48.1 14 0.0003 39.2 2.7 66 230-331 245-310 (361)
150 PRK15429 formate hydrogenlyase 47.7 22 0.00047 41.0 4.4 20 165-184 399-418 (686)
151 PRK11388 DNA-binding transcrip 47.7 12 0.00027 42.5 2.5 42 261-302 413-467 (638)
152 PRK05022 anaerobic nitric oxid 47.2 21 0.00046 39.5 4.2 43 260-302 277-332 (509)
153 PRK12402 replication factor C 47.0 50 0.0011 33.8 6.7 106 167-331 38-181 (337)
154 PRK11361 acetoacetate metaboli 47.0 17 0.00036 39.3 3.2 33 2-34 235-267 (457)
155 CHL00095 clpC Clp protease ATP 46.8 12 0.00026 44.0 2.3 34 5-38 612-645 (821)
156 TIGR01818 ntrC nitrogen regula 46.8 16 0.00035 39.5 3.1 34 2-35 226-259 (463)
157 CHL00181 cbbX CbbX; Provisiona 45.2 10 0.00022 38.9 1.1 15 3-17 121-135 (287)
158 TIGR02903 spore_lon_C ATP-depe 43.8 13 0.00028 42.3 1.8 35 3-37 264-298 (615)
159 KOG0079|consensus 43.3 16 0.00036 33.7 2.0 26 153-185 3-28 (198)
160 PRK14957 DNA polymerase III su 43.3 79 0.0017 35.5 7.8 23 168-190 41-63 (546)
161 PRK04195 replication factor C 43.2 37 0.00081 37.3 5.3 39 264-302 98-140 (482)
162 PRK11361 acetoacetate metaboli 42.8 20 0.00042 38.7 3.0 42 261-302 234-288 (457)
163 PRK14960 DNA polymerase III su 42.8 46 0.00099 38.3 5.8 22 168-189 40-61 (702)
164 COG3604 FhlA Transcriptional r 42.5 20 0.00044 39.4 2.9 53 2-72 315-367 (550)
165 PRK11331 5-methylcytosine-spec 42.4 43 0.00094 36.6 5.4 40 286-334 319-358 (459)
166 PRK05564 DNA polymerase III su 42.2 24 0.00052 36.3 3.4 22 168-189 29-50 (313)
167 PRK14963 DNA polymerase III su 41.7 41 0.00088 37.4 5.2 22 169-190 40-61 (504)
168 PRK15429 formate hydrogenlyase 41.1 23 0.0005 40.8 3.3 33 2-34 468-500 (686)
169 PRK05022 anaerobic nitric oxid 41.0 21 0.00046 39.5 2.9 33 2-34 279-311 (509)
170 PRK11388 DNA-binding transcrip 39.9 21 0.00045 40.7 2.7 33 2-34 414-446 (638)
171 PRK13341 recombination factor 39.8 19 0.00041 41.8 2.3 106 167-331 54-165 (725)
172 PRK15115 response regulator Gl 39.4 17 0.00037 39.2 1.8 33 2-34 226-258 (444)
173 PRK05896 DNA polymerase III su 39.2 27 0.00059 39.5 3.4 142 132-329 4-173 (605)
174 PRK14948 DNA polymerase III su 39.2 20 0.00043 40.9 2.4 22 168-189 41-62 (620)
175 PRK15424 propionate catabolism 39.0 14 0.0003 41.3 1.1 33 2-34 320-352 (538)
176 PRK15115 response regulator Gl 38.7 32 0.00068 37.1 3.8 25 165-190 157-181 (444)
177 PF05272 VirE: Virulence-assoc 38.5 46 0.001 32.1 4.5 96 168-302 55-150 (198)
178 PRK14965 DNA polymerase III su 38.2 31 0.00066 39.0 3.7 139 132-326 4-170 (576)
179 COG1219 ClpX ATP-dependent pro 37.6 19 0.00042 37.5 1.7 15 3-17 161-175 (408)
180 PRK00080 ruvB Holliday junctio 37.3 19 0.00041 37.3 1.7 33 2-34 100-132 (328)
181 PRK10923 glnG nitrogen regulat 37.0 29 0.00064 37.6 3.2 34 2-35 230-263 (469)
182 COG3284 AcoR Transcriptional a 36.6 43 0.00094 37.7 4.4 102 162-300 333-455 (606)
183 PF13177 DNA_pol3_delta2: DNA 36.4 32 0.0007 31.8 3.0 29 217-247 100-128 (162)
184 PF05496 RuvB_N: Holliday junc 36.4 18 0.00039 35.9 1.3 39 2-40 99-138 (233)
185 PRK14958 DNA polymerase III su 36.3 62 0.0013 36.0 5.6 22 168-189 41-62 (509)
186 PRK12323 DNA polymerase III su 35.9 41 0.0009 38.5 4.2 122 149-326 21-175 (700)
187 PRK08903 DnaA regulatory inact 35.5 51 0.0011 31.9 4.3 72 168-247 45-116 (227)
188 PRK10820 DNA-binding transcrip 35.4 19 0.00041 40.1 1.4 33 2-34 296-328 (520)
189 PRK08451 DNA polymerase III su 33.7 1.1E+02 0.0024 34.2 7.1 22 169-190 40-61 (535)
190 PRK14970 DNA polymerase III su 33.3 70 0.0015 33.6 5.3 18 168-185 42-59 (367)
191 PF03266 NTPase_1: NTPase; In 33.2 24 0.00051 33.1 1.5 23 168-190 2-24 (168)
192 TIGR02880 cbbX_cfxQ probable R 33.1 18 0.00039 36.9 0.7 15 3-17 120-134 (284)
193 PRK08691 DNA polymerase III su 32.8 68 0.0015 37.1 5.3 22 168-189 41-62 (709)
194 PRK10365 transcriptional regul 32.8 41 0.00089 36.0 3.5 19 166-184 163-181 (441)
195 KOG0733|consensus 32.7 61 0.0013 36.8 4.7 17 168-184 226-242 (802)
196 COG1219 ClpX ATP-dependent pro 32.7 69 0.0015 33.6 4.8 112 167-312 99-220 (408)
197 PRK14969 DNA polymerase III su 32.4 1.1E+02 0.0023 34.3 6.7 22 168-189 41-62 (527)
198 cd00009 AAA The AAA+ (ATPases 31.5 27 0.00058 29.9 1.5 32 3-34 83-114 (151)
199 PF13335 Mg_chelatase_2: Magne 30.8 1.5E+02 0.0032 25.1 5.8 52 458-528 42-93 (96)
200 COG3604 FhlA Transcriptional r 30.4 73 0.0016 35.3 4.7 106 164-301 245-367 (550)
201 PRK10865 protein disaggregatio 29.9 35 0.00077 40.4 2.5 32 4-35 670-701 (857)
202 PRK05917 DNA polymerase III su 29.7 40 0.00087 34.6 2.6 30 216-247 92-121 (290)
203 TIGR02329 propionate_PrpR prop 29.6 25 0.00055 39.2 1.2 33 2-34 305-337 (526)
204 PRK06871 DNA polymerase III su 29.2 40 0.00086 35.2 2.5 19 168-186 27-45 (325)
205 PRK07133 DNA polymerase III su 28.9 33 0.00072 39.7 2.0 106 168-329 43-172 (725)
206 COG5271 MDN1 AAA ATPase contai 28.8 73 0.0016 40.7 4.7 35 5-39 1294-1329(4600)
207 PF14532 Sigma54_activ_2: Sigm 27.0 50 0.0011 29.4 2.5 75 166-248 22-96 (138)
208 PRK10923 glnG nitrogen regulat 26.8 59 0.0013 35.3 3.4 20 165-184 161-180 (469)
209 COG1618 Predicted nucleotide k 26.8 87 0.0019 29.6 4.0 26 167-192 7-32 (179)
210 TIGR01818 ntrC nitrogen regula 26.1 1.6E+02 0.0035 31.7 6.7 25 165-190 157-181 (463)
211 PRK06647 DNA polymerase III su 26.0 1.2E+02 0.0026 34.2 5.8 143 111-329 3-173 (563)
212 PF14532 Sigma54_activ_2: Sigm 25.6 46 0.00099 29.6 1.9 28 3-30 68-95 (138)
213 PLN03025 replication factor C 25.6 36 0.00078 35.1 1.4 25 5-29 100-124 (319)
214 PF12774 AAA_6: Hydrolytic ATP 25.5 59 0.0013 32.2 2.9 26 4-29 84-109 (231)
215 PF13654 AAA_32: AAA domain; P 25.4 1.3E+02 0.0027 33.6 5.7 63 455-531 444-506 (509)
216 PF05272 VirE: Virulence-assoc 25.4 42 0.00092 32.4 1.8 49 5-64 96-145 (198)
217 COG0542 clpA ATP-binding subun 25.2 1.2E+02 0.0027 35.4 5.6 105 142-276 169-274 (786)
218 PF05729 NACHT: NACHT domain 24.7 43 0.00093 29.9 1.6 25 168-192 3-27 (166)
219 PRK05201 hslU ATP-dependent pr 24.6 28 0.00061 37.8 0.4 48 444-499 351-400 (443)
220 COG2256 MGS1 ATPase related to 24.4 34 0.00073 36.8 0.9 31 221-253 106-136 (436)
221 TIGR00390 hslU ATP-dependent p 24.0 29 0.00062 37.7 0.3 48 444-499 349-398 (441)
222 PRK14961 DNA polymerase III su 24.0 2.1E+02 0.0045 30.2 6.9 28 218-247 118-145 (363)
223 KOG2648|consensus 23.5 24 0.00053 38.1 -0.3 15 1-15 82-98 (453)
224 TIGR02881 spore_V_K stage V sp 23.5 53 0.0012 32.8 2.2 17 3-19 104-120 (261)
225 PF13191 AAA_16: AAA ATPase do 23.0 43 0.00094 30.7 1.3 25 168-192 27-51 (185)
226 PRK07471 DNA polymerase III su 22.6 64 0.0014 34.3 2.6 22 168-189 44-65 (365)
227 PF13177 DNA_pol3_delta2: DNA 22.0 47 0.001 30.7 1.3 27 5-31 103-129 (162)
228 PTZ00112 origin recognition co 21.9 66 0.0014 38.4 2.7 122 169-340 785-940 (1164)
229 PRK14959 DNA polymerase III su 21.6 85 0.0019 35.8 3.5 107 167-329 40-173 (624)
230 PRK14086 dnaA chromosomal repl 21.4 6.2E+02 0.013 29.0 10.1 23 168-190 317-339 (617)
231 PF05553 DUF761: Cotton fibre 21.4 1.4E+02 0.0029 21.1 3.2 21 457-477 3-23 (38)
232 PRK00440 rfc replication facto 21.4 1.9E+02 0.0042 29.1 5.9 76 167-247 40-128 (319)
233 PF08477 Miro: Miro-like prote 21.4 52 0.0011 27.8 1.4 19 168-187 2-20 (119)
234 TIGR00635 ruvB Holliday juncti 21.3 48 0.001 33.6 1.3 32 3-34 80-111 (305)
235 PRK13342 recombination factor 20.8 46 0.00099 35.8 1.1 31 4-34 92-122 (413)
236 PF03969 AFG1_ATPase: AFG1-lik 20.8 64 0.0014 34.2 2.2 24 168-191 65-88 (362)
237 KOG0738|consensus 20.5 63 0.0014 34.7 2.0 33 282-327 340-374 (491)
238 PRK14951 DNA polymerase III su 20.3 2.1E+02 0.0046 32.7 6.3 144 132-331 4-180 (618)
239 PRK08181 transposase; Validate 20.2 1.1E+02 0.0024 31.0 3.7 76 167-247 108-195 (269)
No 1
>KOG0480|consensus
Probab=100.00 E-value=1.2e-87 Score=708.46 Aligned_cols=387 Identities=47% Similarity=0.697 Sum_probs=336.7
Q ss_pred ecccCCCcccchhHHHH-------Hh---hhhcccc-ccCcccccccccccccccccccceeeeecccccCCCCCCCCCC
Q psy14566 11 DEFDKMDPHDQVAIHEA-------ME---QQTISIA-KGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGEL 79 (532)
Q Consensus 11 DEfDkm~~~dr~~ihea-------Me---qqtisia-Kagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~ 79 (532)
|-++++.|||++.+.++ |. .++.+.+ ++|-...||++||++||.+|+++.++|||++.+.-
T Consensus 233 dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~-------- 304 (764)
T KOG0480|consen 233 DLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTL-------- 304 (764)
T ss_pred hhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhccccc--------
Confidence 56899999999987553 22 2222221 23433469999999999999999999999986651
Q ss_pred cchhchHHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhH
Q psy14566 80 HTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKD 155 (532)
Q Consensus 80 ~~~~l~~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~ 155 (532)
..++-..+.++..++..+|..+++|..++++|..|+.|++|+||||+.+|+|++| +||||+.+ +..+|++
T Consensus 305 ~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL------~LfGGv~K~a~eg~~lRGD 378 (764)
T KOG0480|consen 305 AVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILL------SLFGGVHKSAGEGTSLRGD 378 (764)
T ss_pred ccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHH------HHhCCccccCCCCccccCC
Confidence 2233445677888999999999999999999999999999999999999999999 99999987 5689999
Q ss_pred HHHHHhhhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------ee
Q psy14566 156 RNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------EC 224 (532)
Q Consensus 156 I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~ 224 (532)
|| +|++||||++|||+|+. ...+.|| +|+.++++|||+ .+|+.||..+..||||+| ||
T Consensus 379 in----------v~iVGDPgt~KSQfLk~-v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICC 447 (764)
T KOG0480|consen 379 IN----------VCIVGDPGTGKSQFLKA-VCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICC 447 (764)
T ss_pred ce----------EEEeCCCCccHHHHHHH-HhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEE
Confidence 99 99999999999999999 8999999 899999999999 889999999999999999 99
Q ss_pred cccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCC
Q psy14566 225 LDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGG 304 (532)
Q Consensus 225 ~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g 304 (532)
+|| |||||..|+++||||||||+|||+ |||++||||||+||||||||++|
T Consensus 448 IDE--FDKMd~~dqvAihEAMEQQtISIa----------------------------KAGv~aTLnARtSIlAAANPv~G 497 (764)
T KOG0480|consen 448 IDE--FDKMDVKDQVAIHEAMEQQTISIA----------------------------KAGVVATLNARTSILAAANPVGG 497 (764)
T ss_pred ech--hcccChHhHHHHHHHHHhheehhe----------------------------ecceEEeecchhhhhhhcCCcCC
Confidence 999 999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhccccccc
Q psy14566 305 QYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYD 384 (532)
Q Consensus 305 ~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~ 384 (532)
|||+.||+.+||+|++||||||||+|+|+|++|+..|+.|| +||++. |+..... ..
T Consensus 498 hYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia----------------~hIld~---h~~i~~~-----~~ 553 (764)
T KOG0480|consen 498 HYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIA----------------RHILDL---HRGIDDA-----TE 553 (764)
T ss_pred ccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHH----------------HHHHHH---hcccccc-----cc
Confidence 99999999999999999999999999999999999999999 888887 7543321 00
Q ss_pred cccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhccccccChhHH
Q psy14566 385 RTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAA 464 (532)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P~ls~eA~ 464 (532)
+ ...++.+ .+++|| .|||+++|+||.||.
T Consensus 554 ~-------------------~~~~~~e---~vrkYi-----------------------------~yAR~~~P~ls~ea~ 582 (764)
T KOG0480|consen 554 R-------------------VCVYTLE---QVRKYI-----------------------------RYARNFKPKLSKEAS 582 (764)
T ss_pred c-------------------cccccHH---HHHHHH-----------------------------HHHHhcCccccHHHH
Confidence 0 0112333 555555 999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHhh
Q psy14566 465 KLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRK 530 (532)
Q Consensus 465 ~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~~ 530 (532)
+.|+++|+.||+.+.++..++++|||+||||||||||||+||++++++||++|+.++ .+++++
T Consensus 583 ~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea---~eLlk~ 645 (764)
T KOG0480|consen 583 EMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEA---VELLKK 645 (764)
T ss_pred HHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH---HHHHHh
Confidence 999999999999997766678999999999999999999999999999998776544 444443
No 2
>KOG0479|consensus
Probab=100.00 E-value=1.1e-79 Score=640.83 Aligned_cols=403 Identities=31% Similarity=0.390 Sum_probs=319.8
Q ss_pred eecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcchhchHHHh
Q psy14566 10 IDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELM 89 (532)
Q Consensus 10 IDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~~~l~~~~l 89 (532)
-|.+|++.|||||.|.++.. +-.| |+.|.+.-.+||.+|||+|...+..-
T Consensus 221 dDLVD~~KPGDRV~ivG~yr------~Lp~---------k~~g~tsg~FRTvliaNni~~l~ke~--------------- 270 (818)
T KOG0479|consen 221 DDLVDRVKPGDRVNIVGIYR------SLPG---------KSNGNTSGTFRTVLIANNIELLSKEA--------------- 270 (818)
T ss_pred ccccccCCCCCeeEEEEEEe------eccC---------ccCCcccceeEEEEEeccHHhhcccc---------------
Confidence 46699999999999887642 1111 12234455799999998775443321
Q ss_pred hccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHHhhhcc
Q psy14566 90 KKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQNLTSS 165 (532)
Q Consensus 90 ~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~~~~~~ 165 (532)
...++......|..+++.+++|+.|..|++|+||||+.+|++++| .|.||+.+ +..+||+||
T Consensus 271 ~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAill------LLlGGvEk~L~NGshlRGDIN-------- 336 (818)
T KOG0479|consen 271 APDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILL------LLLGGVEKNLENGSHLRGDIN-------- 336 (818)
T ss_pred cccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHH------HHhccceeccCCCceecccee--------
Confidence 012344555677888999999999999999999999999999999 99999877 778999999
Q ss_pred ccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------eecccccccCCC
Q psy14566 166 LFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------ECLDEYEFDKMD 234 (532)
Q Consensus 166 ~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~~de~~vd~~d 234 (532)
++|+|||+++|||||++ +....|+ .|+||++.|||| ++-+.|+++|-+||||.| .|+|| ||||.
T Consensus 337 --iLlvGDPSvAKSQLLRy-VLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDE--FDKMs 411 (818)
T KOG0479|consen 337 --ILLVGDPSVAKSQLLRY-VLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDE--FDKMS 411 (818)
T ss_pred --EEEecCchHHHHHHHHH-HHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehh--ccccc
Confidence 99999999999999999 8889887 899999999999 667889999999999998 89999 99999
Q ss_pred hHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccc
Q psy14566 235 PHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQH 314 (532)
Q Consensus 235 ~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ 314 (532)
..||++|||.||||++.|+ ||||+++|||||||||||||++|+||.++++.+
T Consensus 412 DiDRvAIHEVMEQqtVTIa----------------------------KAGIHasLNARCSVlAAANPvyG~Yd~~k~P~e 463 (818)
T KOG0479|consen 412 DIDRVAIHEVMEQQTVTIA----------------------------KAGIHASLNARCSVLAAANPVYGQYDQSKTPME 463 (818)
T ss_pred chhHHHHHHHHhcceEEeE----------------------------eccchhhhccceeeeeecCccccccCCCCChhh
Confidence 9999999999999999999 999999999999999999999999999999999
Q ss_pred cccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhccccccccccccccccc
Q psy14566 315 NVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVS 394 (532)
Q Consensus 315 ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~ 394 (532)
||+||.+|||||||+|+++|+.|.+.|+.|++||+|.++|..........+... +.-..
T Consensus 464 NIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g----~~v~~----------------- 522 (818)
T KOG0479|consen 464 NIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEG----NGVEG----------------- 522 (818)
T ss_pred ccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCC----Ccccc-----------------
Confidence 999999999999999999999999999999988888877764333322222110 00000
Q ss_pred cccccccccccchhhhhhhHHHHhhccchhhHHHHHHhh-hccchh--hHHHHhhhhhhhhhc-cccccChhHHHHHHHH
Q psy14566 395 LSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQ-IGDQIE--NEEELLERKTVVEKV-IERLIYHGAAKLLVDM 470 (532)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~-i~~~i~--~~~~ll~kyi~yar~-~~P~ls~eA~~~I~~~ 470 (532)
++-...++..... ..+++|.+ +++ -..+++ .-.+|++|||.|||. ++|+|++||.++|.+.
T Consensus 523 ~~~~~~e~~~et~-v~ek~n~l--------------lhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~ 587 (818)
T KOG0479|consen 523 LSTENMEDKKETE-VFEKFNTL--------------LHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEE 587 (818)
T ss_pred cccccccccccch-hHhhhhhh--------------hhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHH
Confidence 0000000000000 00111111 110 001111 136789999999997 9999999999999999
Q ss_pred HHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHH
Q psy14566 471 YTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVE 525 (532)
Q Consensus 471 Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~ 525 (532)
|..||+.+......++.|||+|+||+|||||.||||+|||++|+++|+.-+.++.
T Consensus 588 Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 588 YTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred HhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 9999998776555578999999999999999999999999999988876665554
No 3
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-77 Score=656.35 Aligned_cols=376 Identities=37% Similarity=0.483 Sum_probs=311.6
Q ss_pred eeeeec-ccCCCcccchhHHHHHh-hhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcchhc
Q psy14566 7 VCCIDE-FDKMDPHDQVAIHEAME-QQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEM 84 (532)
Q Consensus 7 vccIDE-fDkm~~~dr~~iheaMe-qqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~~~l 84 (532)
++|.|+ +++..||||+.|.++.- .+..+..+. ....-+++.+.|.+|...+..
T Consensus 200 vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~--------------~~~~~~~~~~~a~~v~~~~~~----------- 254 (682)
T COG1241 200 VILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGR--------------RKGPVFEIYLEANSVEKLDKR----------- 254 (682)
T ss_pred EEEecCcccccCCCCEEEEEEEEecccccccccc--------------cCCceEEEEEEEEEEEeccch-----------
Confidence 445555 89999999999998632 221232221 113457888888665443322
Q ss_pred hHHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHH
Q psy14566 85 SAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQ 160 (532)
Q Consensus 85 ~~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~ 160 (532)
+ ...++.+++..|..+++++++++.+++|++|+|||++.+|++++| +||||+.+ +..+|||||
T Consensus 255 --~--~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilL------qLfgGv~k~~~~g~~iRGDIn--- 321 (682)
T COG1241 255 --E--EVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILL------QLFGGVKKNLPDGTRIRGDIH--- 321 (682)
T ss_pred --h--hccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHH------HhcCCCcccCCCCccccccee---
Confidence 0 123566888999999999999999999999999999999999999 99999987 457999999
Q ss_pred hhhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------eeccccc
Q psy14566 161 NLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------ECLDEYE 229 (532)
Q Consensus 161 ~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~~de~~ 229 (532)
+||+||||++|||||++ +.++.|| +|++++++|||| .+|+..++.|.+||||+| ||+||
T Consensus 322 -------ILLvGDPgtaKSqlLk~-v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDE-- 391 (682)
T COG1241 322 -------ILLVGDPGTAKSQLLKY-VAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDE-- 391 (682)
T ss_pred -------EEEcCCCchhHHHHHHH-HHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEe--
Confidence 99999999999999999 8899998 899999999999 789988779999999999 99999
Q ss_pred ccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCC
Q psy14566 230 FDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRT 309 (532)
Q Consensus 230 vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~ 309 (532)
+|||+..++++||||||||+|||+ ||||++||||||||||||||++||||++
T Consensus 392 fdKm~~~dr~aihEaMEQQtIsIa----------------------------KAGI~atLnARcsvLAAaNP~~Gryd~~ 443 (682)
T COG1241 392 FDKMNEEDRVAIHEAMEQQTISIA----------------------------KAGITATLNARCSVLAAANPKFGRYDPK 443 (682)
T ss_pred ccCCChHHHHHHHHHHHhcEeeec----------------------------ccceeeecchhhhhhhhhCCCCCcCCCC
Confidence 999999999999999999999999 9999999999999999999999999999
Q ss_pred CCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccc
Q psy14566 310 KSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSL 389 (532)
Q Consensus 310 ~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~ 389 (532)
+|+.+||+||++|||||||||++.|++|++.|+.+| +||++. |...... .. ...
T Consensus 444 ~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia----------------~hil~~---h~~~~~~-----~~--~~~ 497 (682)
T COG1241 444 KTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIA----------------EHILDK---HRGEEPE-----ET--ISL 497 (682)
T ss_pred CCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHH----------------HHHHHH---Hhccccc-----cc--ccc
Confidence 999999999999999999999999999999999999 677766 6443221 00 000
Q ss_pred ccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc-cccccChhHHHHHH
Q psy14566 390 QHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-IERLIYHGAAKLLV 468 (532)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-~~P~ls~eA~~~I~ 468 (532)
.. .+ ..-..+.++|+||+.|||+ ++|+||++|.+.|.
T Consensus 498 ------~~------------~~------------------------~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~ 535 (682)
T COG1241 498 ------DG------------VD------------------------EVEERDFELLRKYISYARKNVTPVLTEEAREELE 535 (682)
T ss_pred ------cc------------cc------------------------ccccCcHHHHHHHHHHHhccCCcccCHHHHHHHH
Confidence 00 00 0000145677888899997 89999999999999
Q ss_pred HHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHH
Q psy14566 469 DMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQ 526 (532)
Q Consensus 469 ~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~ 526 (532)
+||++||+.....+..+++|||+||||||||||||||||+||+.|+++|+..+..+..
T Consensus 536 ~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 536 DYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred HHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 9999999976432245789999999999999999999999999999877766665544
No 4
>KOG0481|consensus
Probab=100.00 E-value=1.5e-72 Score=580.44 Aligned_cols=314 Identities=36% Similarity=0.472 Sum_probs=276.5
Q ss_pred CCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHHhhhccccc
Q psy14566 93 MTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQNLTSSLFP 168 (532)
Q Consensus 93 ~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~~~~~~~~p 168 (532)
||+++-+.+..+++.+++|+.|..|++|+|||++++|+++++ .||||..+ +..+||+|| +
T Consensus 304 ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaC------lLFgGsrK~LpDg~~lRGDIN----------V 367 (729)
T KOG0481|consen 304 FTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIAC------LLFGGSRKRLPDGVTLRGDIN----------V 367 (729)
T ss_pred CChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHH------HhhcCccccCCCcceecccee----------E
Confidence 556677778889999999999999999999999999999999 99999866 567899999 9
Q ss_pred cccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------eecccccccCCChHH
Q psy14566 169 SIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------ECLDEYEFDKMDPHD 237 (532)
Q Consensus 169 ll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~~de~~vd~~d~~~ 237 (532)
||.||||++|||+|++ +.+..|- +|+||+++|||| +.|+..+-.+..|+||.| +|+|| ||||.++|
T Consensus 368 LLLGDPgtAKSQlLKF-vEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDE--FDKMre~D 444 (729)
T KOG0481|consen 368 LLLGDPGTAKSQLLKF-VEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDE--FDKMREDD 444 (729)
T ss_pred EEecCCchhHHHHHHH-HHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeeh--hhccCchh
Confidence 9999999999999999 8999986 999999999999 889999999999999998 89999 99999999
Q ss_pred HHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCcccccc
Q psy14566 238 QVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVS 317 (532)
Q Consensus 238 ~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~ 317 (532)
|++||||||||||||| ||||.++||.||||||||||++||||..||..+||.
T Consensus 445 RVAIHEAMEQQTISIA----------------------------KAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNID 496 (729)
T KOG0481|consen 445 RVAIHEAMEQQTISIA----------------------------KAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNID 496 (729)
T ss_pred hhHHHHHHHhhhHHHh----------------------------hhcceeeecchhhhhhhcCCccccccccCCcccccc
Confidence 9999999999999999 999999999999999999999999999999999999
Q ss_pred CCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccccccccccc
Q psy14566 318 LSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSA 397 (532)
Q Consensus 318 l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
|.+.+|||||+||++.|+.|+.+|..|| +||+++ |.+...+.. + +-+.
T Consensus 497 f~~TILSRFDmIFIVKD~h~~~~D~~lA----------------kHVI~v---H~~~~n~~~--~-----~~~~------ 544 (729)
T KOG0481|consen 497 FMPTILSRFDMIFIVKDEHDEERDITLA----------------KHVINV---HVSKANAQT--D-----SQEE------ 544 (729)
T ss_pred hhhhHhhhccEEEEEeccCcchhhhHHH----------------HHhhhh---hcccccccc--C-----cccc------
Confidence 9999999999999999999999999999 888888 765322100 0 0000
Q ss_pred ccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc-cccccChhHHHHHHHHHHHHhh
Q psy14566 398 PIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-IERLIYHGAAKLLVDMYTQLRQ 476 (532)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-~~P~ls~eA~~~I~~~Y~~lR~ 476 (532)
... +.+.+.|++||.|||. |.|.||++|.+.|+.+|+.+|+
T Consensus 545 ------~~~--------------------------------ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~ 586 (729)
T KOG0481|consen 545 ------NEG--------------------------------EIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRK 586 (729)
T ss_pred ------CCC--------------------------------cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHH
Confidence 000 1134456777799995 9999999999999999999996
Q ss_pred c----cCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHh
Q psy14566 477 R----DGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLR 529 (532)
Q Consensus 477 ~----~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~ 529 (532)
. +..+..+.++|||+||||++||++|+.|||+|+..+|+ ..|+||||
T Consensus 587 ~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate------~hV~EA~R 637 (729)
T KOG0481|consen 587 GVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATE------AHVEEALR 637 (729)
T ss_pred HHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccH------HHHHHHHH
Confidence 3 33344567899999999999999999999999999995 66777776
No 5
>KOG0478|consensus
Probab=100.00 E-value=3.9e-71 Score=587.36 Aligned_cols=372 Identities=32% Similarity=0.434 Sum_probs=305.2
Q ss_pred eeeeec-ccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccC-CCCCCCCCCcchhc
Q psy14566 7 VCCIDE-FDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPT-NPRFGGGELHTEEM 84 (532)
Q Consensus 7 vccIDE-fDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aa-Np~~g~~~~~~~~l 84 (532)
+||=|| +|+..||||+.+.++..-+++.....- +.++ --++|+|=+-|+--+ +.+.+.-+....
T Consensus 333 v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~------r~vk------Svyktyldvvh~rk~s~~rl~~~d~~d~-- 398 (804)
T KOG0478|consen 333 VVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRM------RMVK------SVYKTYLDVVHIRKASMKRLEGSDERDV-- 398 (804)
T ss_pred EEEehhhhhccCCCCeEEEEEEEEeEEeccCcch------hhHH------HHHHHHhHhhhhhhhhhhhccccccccc--
Confidence 677777 899999999999988776666543221 1122 236777766555322 222111111000
Q ss_pred hHHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHH
Q psy14566 85 SAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQ 160 (532)
Q Consensus 85 ~~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~ 160 (532)
...+..+++..|.++.+.|++|+.|++|++|+||+++++|++++| +||||..+ ...+|++||
T Consensus 399 -----~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLL------qLfGGt~k~~~~~~~~R~~IN--- 464 (804)
T KOG0478|consen 399 -----DEVRRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLL------QLFGGTRKEDEKSGRFRGDIN--- 464 (804)
T ss_pred -----cccccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHH------HHhcCCcccccccccccccce---
Confidence 111335779999999999999999999999999999999999999 99999876 235888888
Q ss_pred hhhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------eeccccc
Q psy14566 161 NLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------ECLDEYE 229 (532)
Q Consensus 161 ~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~~de~~ 229 (532)
+||+||||++|||+|++ +.+|.|| +|+|+++.|+|+ .+|+.++..+++|+||+| ||+||
T Consensus 465 -------ILL~GDPGtsKSqlLqy-v~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDE-- 534 (804)
T KOG0478|consen 465 -------ILLVGDPGTSKSQLLQY-CHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDE-- 534 (804)
T ss_pred -------EEEecCCCcCHHHHHHH-HHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchh--
Confidence 99999999999999999 8899998 999999999999 889999999999999999 99999
Q ss_pred ccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCC
Q psy14566 230 FDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRT 309 (532)
Q Consensus 230 vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~ 309 (532)
||||.+..+.-|||+|||||+||+ ||||.|+|||||||||||||.+++||++
T Consensus 535 FDKM~dStrSvLhEvMEQQTvSIA----------------------------KAGII~sLNAR~SVLAaANP~~skynp~ 586 (804)
T KOG0478|consen 535 FDKMSDSTRSVLHEVMEQQTLSIA----------------------------KAGIIASLNARCSVLAAANPIRSKYNPN 586 (804)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhHh----------------------------hcceeeeccccceeeeeeccccccCCCC
Confidence 999999999999999999999999 9999999999999999999999999999
Q ss_pred CCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccc
Q psy14566 310 KSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSL 389 (532)
Q Consensus 310 ~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~ 389 (532)
+++.+||+||++|||||||||+++|.+|+..|+.|+ +||+.+ |..... . ..
T Consensus 587 k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La----------------~HivsL---y~e~~~--------~--~~ 637 (804)
T KOG0478|consen 587 KSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLA----------------DHIVAL---YPETGE--------K--QG 637 (804)
T ss_pred CchhhccCCChhhhhhhcEEEEEecCcchhHHHHHH----------------HHHHHh---cccccc--------c--ch
Confidence 999999999999999999999999999999999999 888877 321000 0 00
Q ss_pred ccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc-cccccChhHHHHHH
Q psy14566 390 QHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-IERLIYHGAAKLLV 468 (532)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-~~P~ls~eA~~~I~ 468 (532)
...+ + .+.++.|+ .|||. ++|.+++||.+.+.
T Consensus 638 ---------------~~~~--d-~~~lr~yi-----------------------------~yArk~i~p~l~~ea~~~l~ 670 (804)
T KOG0478|consen 638 ---------------SEAI--D-MNLLRDYI-----------------------------RYARKNIHPALSPEASQALI 670 (804)
T ss_pred ---------------hHHH--h-HHHHHHHH-----------------------------HHHhccCCccccHHHHHHHH
Confidence 0000 1 22444454 99985 99999999999999
Q ss_pred HHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHh
Q psy14566 469 DMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLR 529 (532)
Q Consensus 469 ~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~ 529 (532)
.+|++||+..... +.+.-|+|||||||||+||||||++++.|.+ .||++++|
T Consensus 671 ~ayvd~rk~~~~~---~~itat~rQlesLiRlsEahak~r~s~~ve~------~dV~eA~~ 722 (804)
T KOG0478|consen 671 QAYVDMRKIGEGA---GQITATPRQLESLIRLSEAHAKMRLSNRVEE------IDVEEAVR 722 (804)
T ss_pred HHhhhhhhhcccc---cccchhHHHHHHHHHHHHHHHHhhcccccch------hhHHHHHH
Confidence 9999999986532 2466899999999999999999999999995 66666655
No 6
>KOG0482|consensus
Probab=100.00 E-value=1.2e-71 Score=573.28 Aligned_cols=363 Identities=32% Similarity=0.420 Sum_probs=303.1
Q ss_pred ccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcchhchHHHhhcc
Q psy14566 13 FDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKH 92 (532)
Q Consensus 13 fDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~~~l~~~~l~~~ 92 (532)
..|++|||.|.+.++. ..+..- |++.+++ .|-+.|++-|..|...|.+|..+....+ .+++
T Consensus 262 tr~~~PGDvV~vsGiF----LP~pyt-----Gfr~~~a----GLladtYLeAh~v~~~nk~~~~~~~~~~-~~~~----- 322 (721)
T KOG0482|consen 262 TRKCQPGDVVVVSGIF----LPIPYT-----GFRALKA----GLLADTYLEAHRVVQINKKYDNIEKTGE-LEPE----- 322 (721)
T ss_pred ceecCCCCEEEEeeee----cccchh-----hHHHHHh----hhHHHHHHHHhhhhhhcccccccccccc-ccHH-----
Confidence 4578999998877764 222222 4555543 5778898888777777887666543221 2222
Q ss_pred CCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHHhhhccccc
Q psy14566 93 MTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQNLTSSLFP 168 (532)
Q Consensus 93 ~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~~~~~~~~p 168 (532)
+..+..+.+.|+.++.|++|.||||+++|+.++| .|+||+.+ +.++||+|| +
T Consensus 323 --------~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLL------lLVGgvd~~~~dGMKIRGdIN----------i 378 (721)
T KOG0482|consen 323 --------ELELIAEGDFYEKLAASIAPEIYGHEDVKKALLL------LLVGGVDKSPGDGMKIRGDIN----------I 378 (721)
T ss_pred --------HHHHhhcccHHHHHHHhhchhhccchHHHHHHHH------HhhCCCCCCCCCCceeeccee----------E
Confidence 2234567889999999999999999999999999 99999876 568999999 9
Q ss_pred cccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------eecccccccCCChHH
Q psy14566 169 SIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------ECLDEYEFDKMDPHD 237 (532)
Q Consensus 169 ll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~~de~~vd~~d~~~ 237 (532)
||+||||.+|||||++ ..++.|| +|+|||+.|||| +.|+.-+++-.+|+||+| ||+|| ||||++.|
T Consensus 379 cLmGDPGVAKSQLLky-i~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDE--fDKM~e~D 455 (721)
T KOG0482|consen 379 CLMGDPGVAKSQLLKY-ISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDE--FDKMDESD 455 (721)
T ss_pred EecCCCchhHHHHHHH-HHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehh--hhhhhhhh
Confidence 9999999999999999 9999999 899999999999 889999999999999999 99999 99999999
Q ss_pred HHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCcccccc
Q psy14566 238 QVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVS 317 (532)
Q Consensus 238 ~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~ 317 (532)
|.+|||.||||+|||+ ||||.+||||||||||||||.+||||+..|+.+||+
T Consensus 456 RtAIHEVMEQQTISIa----------------------------KAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~ 507 (721)
T KOG0482|consen 456 RTAIHEVMEQQTISIA----------------------------KAGINTTLNARTSILAAANPAYGRYNPRRSPEQNIN 507 (721)
T ss_pred hHHHHHHHHhhhhhhh----------------------------hhccccchhhhHHhhhhcCccccccCcccChhHhcC
Confidence 9999999999999999 999999999999999999999999999999999999
Q ss_pred CCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccccccccccc
Q psy14566 318 LSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSA 397 (532)
Q Consensus 318 l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
||++|||||||+|++.|.||.+.|..+| +||... |...+.. . .
T Consensus 508 LPaALLSRFDll~Li~D~pdrd~D~~LA----------------~HiTyV---H~H~~qp----~--~------------ 550 (721)
T KOG0482|consen 508 LPAALLSRFDLLWLIQDRPDRDNDLRLA----------------QHITYV---HQHEEQP----P--L------------ 550 (721)
T ss_pred CcHHHHHhhhhhhhhccCCcccchHHHH----------------HHhHhh---hccCCCC----C--c------------
Confidence 9999999999999999999999999999 555554 5433220 0 0
Q ss_pred ccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhccccccChhHHHHHHHHHHHHhhc
Q psy14566 398 PIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQR 477 (532)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P~ls~eA~~~I~~~Y~~lR~~ 477 (532)
.+.+++ .+.||.|| ++||+.+|.++++..++|...|++||+.
T Consensus 551 --------~fepl~-~~~mR~yI-----------------------------~~ak~~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 551 --------DFEPLD-PNLMRRYI-----------------------------SLAKRKNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred --------cCCCCC-HHHHHHHH-----------------------------HHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 001111 33666666 9999999999999999999999999998
Q ss_pred cCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHH
Q psy14566 478 DGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQ 526 (532)
Q Consensus 478 ~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~ 526 (532)
...+ ++...+|+|+|.+|+|||+|+|||||++.|.++||+.+-.++|
T Consensus 593 a~~~--~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 593 ARSS--KDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred hhcc--CCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 7632 4567899999999999999999999999999755555444443
No 7
>KOG0477|consensus
Probab=100.00 E-value=8.1e-71 Score=577.90 Aligned_cols=376 Identities=27% Similarity=0.389 Sum_probs=308.6
Q ss_pred eeeecccCCCcccchhHHHHHhhhh-ccc-cccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcchhch
Q psy14566 8 CCIDEFDKMDPHDQVAIHEAMEQQT-ISI-AKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMS 85 (532)
Q Consensus 8 ccIDEfDkm~~~dr~~iheaMeqqt-isi-aKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~~~l~ 85 (532)
..=|.+|.++|||-+-+.++..... .|. .|.| .+ -+-|.|+|+||...+. ..+
T Consensus 364 Ll~DLvD~~kpGdEievTGIy~nn~d~sLN~kng-------------Fp--vfatvi~ANhV~~k~~---~~~------- 418 (854)
T KOG0477|consen 364 LLADLVDSCKPGDEIEVTGIYTNNFDGSLNTKNG-------------FP--VFATVIEANHVVKKDG---KFD------- 418 (854)
T ss_pred ehhhhhhhcCCCcceEEeeeecccccccccccCC-------------cc--ccceeheehhhhhhcc---ccc-------
Confidence 3446688888888876666532110 011 0111 11 1346677877643322 211
Q ss_pred HHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHHh
Q psy14566 86 AELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQN 161 (532)
Q Consensus 86 ~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~~ 161 (532)
...++.++|..|..+.+|+.+..+|++|+||+|||++++|.+++| .||||+++ ++.+||+||
T Consensus 419 ----~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAl------aLfGGv~kn~~~khkvRGDin---- 484 (854)
T KOG0477|consen 419 ----VDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVAL------ALFGGVPKNPGGKHKVRGDIN---- 484 (854)
T ss_pred ----hhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHH------HHhcCCccCCCCCceecccee----
Confidence 123456889999999999999999999999999999999999999 99999987 578999999
Q ss_pred hhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------eecccccc
Q psy14566 162 LTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------ECLDEYEF 230 (532)
Q Consensus 162 ~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~~de~~v 230 (532)
.||+|||||+|||+|++ ..++.+| +|.|++++|||+ ..|+.-+.+|.+||||+| ||+|| |
T Consensus 485 ------vLL~GDPGTaKSQFLKY-~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDE--F 555 (854)
T KOG0477|consen 485 ------VLLLGDPGTAKSQFLKY-AEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDE--F 555 (854)
T ss_pred ------EEEecCCCccHHHHHHH-HHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeeh--h
Confidence 99999999999999999 8999998 899999999999 557888999999999999 99999 9
Q ss_pred cCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCC
Q psy14566 231 DKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTK 310 (532)
Q Consensus 231 d~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~ 310 (532)
|||..+||.+||||||||.|||+ ||||+++|+|||+|||||||++||||++.
T Consensus 556 DKMndqDRtSIHEAMEQQSISIS----------------------------KAGIVtsLqArctvIAAanPigGRY~~s~ 607 (854)
T KOG0477|consen 556 DKMNDQDRTSIHEAMEQQSISIS----------------------------KAGIVTSLQARCTVIAAANPIGGRYNPSL 607 (854)
T ss_pred hhhcccccchHHHHHHhcchhhh----------------------------hhhHHHHHHhhhhhheecCCCCCccCCcc
Confidence 99999999999999999999999 99999999999999999999999999999
Q ss_pred CccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhccccccccccccc
Q psy14566 311 SLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQ 390 (532)
Q Consensus 311 ~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~ 390 (532)
++.+|++|..|+|||||+++|+.|..|+..|+++| ++|++. |...... ......+
T Consensus 608 tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA----------------~fVV~S---h~r~hp~-----~~~~~~~- 662 (854)
T KOG0477|consen 608 TFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLA----------------KFVVGS---HVRHHPS-----NKEEDGL- 662 (854)
T ss_pred chhhccccccchhhhcceeeeeecccCchhHHHHH----------------HHHHHh---HhhcCCc-----ccccCcc-
Confidence 99999999999999999999999999999999999 777766 5332221 0000000
Q ss_pred cccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc-cccccChhHHHHHHH
Q psy14566 391 HNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-IERLIYHGAAKLLVD 469 (532)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-~~P~ls~eA~~~I~~ 469 (532)
++ + .|..-+ -+.|++||+|||.|||. ++|+|.+--.+.+..
T Consensus 663 -------------~e-----~---~~~~~v-----------------~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~ 704 (854)
T KOG0477|consen 663 -------------EE-----P---QMPARV-----------------EPIPQELLRKYIIYAREKVRPKLNQMDMDKISS 704 (854)
T ss_pred -------------cc-----c---cccccc-----------------ccChHHHHHHHHHHHHHhcccccccccHHHHHH
Confidence 00 0 111001 23478899999999995 999999999999999
Q ss_pred HHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHH
Q psy14566 470 MYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVE 525 (532)
Q Consensus 470 ~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~ 525 (532)
.|..||+.+.. .+++|||+|++||+||+|||||||+||+.|+++|+..+..++
T Consensus 705 vya~lRkES~~---tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ 757 (854)
T KOG0477|consen 705 VYADLRKESMA---TGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVM 757 (854)
T ss_pred HHHHHHhhccc---cCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHH
Confidence 99999998653 467999999999999999999999999999999988877654
No 8
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=6.4e-68 Score=548.73 Aligned_cols=309 Identities=39% Similarity=0.518 Sum_probs=236.3
Q ss_pred HHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHHhhhccccccccCCc
Q psy14566 99 NKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQNLTSSLFPSIHGNE 174 (532)
Q Consensus 99 DlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~~~~~~~~pll~gdp 174 (532)
+.|..+.+++++++.|++|++|+|+|++.+|++++| +|+||..+ +..+|++|| +|++|||
T Consensus 3 ~~i~~l~~~~~~~~~l~~s~aP~i~g~~~iK~aill------~L~~~~~~~~~~~~~~r~~ih----------iLlvGdp 66 (331)
T PF00493_consen 3 EKIKELSKKPNIFDRLANSIAPSIYGHEDIKKAILL------QLFGGVEKNDPDGTRIRGNIH----------ILLVGDP 66 (331)
T ss_dssp HHHHCCCCTTTHHHCCHHHCSSTTTT-HHHHHHHCC------CCTT--SCCCCT-TEE--S------------EEEECSC
T ss_pred HHHHHHhcCCcHHHHHHHHhCCcCcCcHHHHHHHHH------HHHhccccccccccccccccc----------eeeccch
Confidence 467788999999999999999999999999999999 99999876 345788888 9999999
Q ss_pred hHHHHHHHHHHHHHhccc----cCCCCCCCceeEE-Eeeccccchhhhcccee------eecccccccCCChHHHHHHHH
Q psy14566 175 QIKKAKLLVDMYTQLRQR----DGNSSSKATWRIT-TRQLESLIRLSEAMAKM------ECLDEYEFDKMDPHDQVAIHE 243 (532)
Q Consensus 175 ~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~T-~RqlESliRLsEA~Akv------~~~de~~vd~~d~~~~~~l~e 243 (532)
|++|||+|++ ..++.|+ +|++++++|||++ .|+..+..|..||||.+ ||+|| +|+|+..++.+|||
T Consensus 67 g~gKS~ll~~-~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe--~dk~~~~~~~~l~e 143 (331)
T PF00493_consen 67 GTGKSQLLKY-VAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDE--FDKMKEDDRDALHE 143 (331)
T ss_dssp HHCHHHHHHC-CCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECT--TTT--CHHHHHHHH
T ss_pred hhhHHHHHHH-HHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecc--cccccchHHHHHHH
Confidence 9999999998 7889998 7899999999995 47777889999999998 99999 99999999999999
Q ss_pred HHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCccc
Q psy14566 244 AMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIM 323 (532)
Q Consensus 244 aMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LL 323 (532)
|||||++||+ ||||+++|||||||+|||||++|+||+++++.+|+++|++||
T Consensus 144 aMEqq~isi~----------------------------kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LL 195 (331)
T PF00493_consen 144 AMEQQTISIA----------------------------KAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLL 195 (331)
T ss_dssp HHHCSCEEEC----------------------------TSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCH
T ss_pred HHHcCeeccc----------------------------hhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhH
Confidence 9999999999 999999999999999999999999999999999999999999
Q ss_pred ccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccccccccccccccccc
Q psy14566 324 SRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRF 403 (532)
Q Consensus 324 SRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (532)
|||||||++.|.+|++.|+.+| +||++. |...... ...
T Consensus 196 SRFDLif~l~D~~d~~~D~~la----------------~~il~~---~~~~~~~----~~~------------------- 233 (331)
T PF00493_consen 196 SRFDLIFLLRDKPDEEEDERLA----------------EHILDS---HRNGKKS----KEK------------------- 233 (331)
T ss_dssp CC-SEEECC--TTT-HHHHHHH----------------HHHHTT---T---S----------------------------
T ss_pred hhcCEEEEeccccccccccccc----------------eEEEec---ccccccc----ccc-------------------
Confidence 9999999999999999999999 777766 5332110 000
Q ss_pred ccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhh-ccccccChhHHHHHHHHHHHHhhccCCCC
Q psy14566 404 DLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEK-VIERLIYHGAAKLLVDMYTQLRQRDGNSS 482 (532)
Q Consensus 404 ~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar-~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~ 482 (532)
..... ....+.++|++|+.||| +++|.||+||.++|.+||+.+|+....+
T Consensus 234 -----------~~~~~-----------------~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~- 284 (331)
T PF00493_consen 234 -----------KIKKN-----------------DKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSN- 284 (331)
T ss_dssp --------------SS-----------------S-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCH-
T ss_pred -----------ccccc-----------------CCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccccc-
Confidence 00000 00113445666779999 7999999999999999999999977322
Q ss_pred CCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHH
Q psy14566 483 SKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQ 526 (532)
Q Consensus 483 ~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~ 526 (532)
..+.|+|+||||||||||||||||+||++|+++|+..+..+.+
T Consensus 285 -~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 285 -NKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp -SS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred -ccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 3568999999999999999999999999999888877776655
No 9
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=1.1e-63 Score=557.12 Aligned_cols=404 Identities=25% Similarity=0.327 Sum_probs=301.1
Q ss_pred eeeec-ccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcchhchH
Q psy14566 8 CCIDE-FDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSA 86 (532)
Q Consensus 8 ccIDE-fDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~~~l~~ 86 (532)
++-|+ +|++.|||||.|.++.........+.+ ++. .--+++++.|.++...+...+..... +...
T Consensus 351 ~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~------~~~------~~~~~~yl~~~~i~~~~~~~~~~~~~--~~~~ 416 (915)
T PTZ00111 351 NLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTR------RTL------KSLYTYFVNVIHVKVINSTNANQPEK--GLKY 416 (915)
T ss_pred EEecchhccCCCCCEEEEEEEEEeccccccccc------ccc------ccccceEEEEEEEEEecccccccccc--cccc
Confidence 44444 999999999999987643322111110 000 11257788887775544332221100 0000
Q ss_pred HHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCc-------------hhhH
Q psy14566 87 ELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGN-------------EQIK 153 (532)
Q Consensus 87 ~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~-------------~~lR 153 (532)
..-...++..+...|..+++++++++.|++|++|+|+|++.+|++++| +||||+.+. ..+|
T Consensus 417 ~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL------~L~gG~~k~~~~~~~~dg~~~~~~iR 490 (915)
T PTZ00111 417 LGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLC------QLFSGNKNSSDFNKSPDACYKVDNFR 490 (915)
T ss_pred ccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHH------HHhcCCcccccccccccccccccccc
Confidence 000113667788899999999999999999999999999999999999 999998541 4567
Q ss_pred hHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeEEE--eeccccchhhhcccee-----
Q psy14566 154 KDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRITT--RQLESLIRLSEAMAKM----- 222 (532)
Q Consensus 154 ~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~T~--RqlESliRLsEA~Akv----- 222 (532)
+++| +||+||||+||++++++ +.++.+| +|.+++..|+++.+ ++.++..|..++||.+
T Consensus 491 gdih----------VLLvGDPGTGKSqLAr~-Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgG 559 (915)
T PTZ00111 491 GIIN----------VLLCGDPGTAKSQLLHY-THLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGG 559 (915)
T ss_pred CCce----------EEEeCCCCccHHHHHHH-HHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCC
Confidence 7777 99999999999999999 8888887 45677778888833 4445688999999998
Q ss_pred -eecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCC
Q psy14566 223 -ECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANP 301 (532)
Q Consensus 223 -~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp 301 (532)
+|+|| +++|+...+.+|||+||||++||+ |+|+.++|++||+|||||||
T Consensus 560 tL~IDE--idkms~~~Q~aLlEaMEqqtIsI~----------------------------KaGi~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 560 VCCIDE--LDKCHNESRLSLYEVMEQQTVTIA----------------------------KAGIVATLKAETAILASCNP 609 (915)
T ss_pred eEEecc--hhhCCHHHHHHHHHHHhCCEEEEe----------------------------cCCcceecCCCeEEEEEcCC
Confidence 89999 999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhh--hcc
Q psy14566 302 IGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMEL--ALN 379 (532)
Q Consensus 302 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~--~~~ 379 (532)
++|+||+++++.+|++||++|||||||||+++|.+|+++|+.|| +||++. |..... ..+
T Consensus 610 ~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA----------------~hI~~~---~~~~h~~~~~~ 670 (915)
T PTZ00111 610 INSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLIS----------------LSIAKD---FLLPHMTGSGN 670 (915)
T ss_pred cccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHH----------------HHHHHh---hcccccccccc
Confidence 99999999999999999999999999999999999999999999 444443 211000 000
Q ss_pred -ccccccccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc-ccc
Q psy14566 380 -VSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-IER 457 (532)
Q Consensus 380 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-~~P 457 (532)
...+.+.. ..+ .. ++ .+. ........+.++|+|||+|||. |+|
T Consensus 671 ~~~~~~~~~-~~~----------------~~-~~--~~~---------------~~~~~~~i~~~lLrkYI~YAR~~~~P 715 (915)
T PTZ00111 671 DEDTYDRSN-TMH----------------VE-DE--SLR---------------SEKDYNKNDLDMLRMYIKFSKLHCFP 715 (915)
T ss_pred cccchhccc-ccc----------------cc-cc--ccc---------------cccccCCCCHHHHHHHHHHHhccCCC
Confidence 00000000 000 00 00 000 0000012357888999999984 999
Q ss_pred ccChhHHHHHHHHHHHHhhccC---------------------CCCCCCccccchhhHHHHHHHHHhhhhccCccccccc
Q psy14566 458 LIYHGAAKLLVDMYTQLRQRDG---------------------NSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKC 516 (532)
Q Consensus 458 ~ls~eA~~~I~~~Y~~lR~~~~---------------------~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~ 516 (532)
+||+||++.|++||++||+... .+++..++|||+||||||||||||||||+|+++||++
T Consensus 716 ~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~ 795 (915)
T PTZ00111 716 KLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPA 795 (915)
T ss_pred CCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHH
Confidence 9999999999999999998421 1123356899999999999999999999999999988
Q ss_pred ccCchhHHHH
Q psy14566 517 CETNTSNVEQ 526 (532)
Q Consensus 517 d~~~~~~~~~ 526 (532)
||..+..+.+
T Consensus 796 Dv~~Ai~L~~ 805 (915)
T PTZ00111 796 DALQAVQIVK 805 (915)
T ss_pred HHHHHHHHHH
Confidence 8877777654
No 10
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=3.2e-55 Score=478.06 Aligned_cols=377 Identities=37% Similarity=0.483 Sum_probs=293.7
Q ss_pred eeeec-ccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCC--CCCCCCcchhc
Q psy14566 8 CCIDE-FDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPR--FGGGELHTEEM 84 (532)
Q Consensus 8 ccIDE-fDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~--~g~~~~~~~~l 84 (532)
.+.|+ +|++.||||+.|.++....... .+... ..+ .--+.+++.|.+|...+.. ++....
T Consensus 109 ~l~~dLvd~~~PGD~V~i~Gi~~~~~~~-~~~~~----~~~-------~~~~~~~l~a~~i~~~~~~~~~~~~~~----- 171 (509)
T smart00350 109 ILDGDLVDKAKPGDRVEVTGIYRNIPYG-FKLNT----VKG-------LPVFATYIEANHVRKLDYKRSFEDCSF----- 171 (509)
T ss_pred EEcccccCcccCCCEEEEEEEEEeeccc-ccccc----CCC-------cceeeEEEEEeEEEEcccccccccccc-----
Confidence 34454 8999999999999986432211 01100 000 0124677778777543321 111000
Q ss_pred hHHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhHHHHHH
Q psy14566 85 SAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKDRNLYQ 160 (532)
Q Consensus 85 ~~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~I~~~~ 160 (532)
....++..+.+.|..+.+++++++.|++|++|.++|++.+|+++++ +++||..+ +..+|+++|
T Consensus 172 ----~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l------~l~gg~~~~~~~~~~~r~~~~--- 238 (509)
T smart00350 172 ----SVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILL------LLFGGVHKNLPDGMKIRGDIN--- 238 (509)
T ss_pred ----ccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHH------HHhCCCccccCCCccccccce---
Confidence 0123556777888889999999999999999999999999999999 99998754 446777777
Q ss_pred hhhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------eeccccc
Q psy14566 161 NLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------ECLDEYE 229 (532)
Q Consensus 161 ~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~~de~~ 229 (532)
++|+|+||+||+++++. ..++.++ .|.+++..|+|+ .+|+..+..|..++|+.+ +|+||
T Consensus 239 -------vLL~G~pGtGKs~lar~-l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDE-- 308 (509)
T smart00350 239 -------ILLLGDPGTAKSQLLKY-VEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDE-- 308 (509)
T ss_pred -------EEEeCCCChhHHHHHHH-HHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEec--
Confidence 99999999999999999 7788776 455567778888 668877888888888776 89999
Q ss_pred ccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCC
Q psy14566 230 FDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRT 309 (532)
Q Consensus 230 vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~ 309 (532)
+++++...+.+|+|+||||+++|+ |+|+.++|++||+||||+||++|+||+.
T Consensus 309 i~~l~~~~q~~L~e~me~~~i~i~----------------------------k~G~~~~l~~~~~viAa~NP~~g~y~~~ 360 (509)
T smart00350 309 FDKMDDSDRTAIHEAMEQQTISIA----------------------------KAGITTTLNARCSVLAAANPIGGRYDPK 360 (509)
T ss_pred hhhCCHHHHHHHHHHHhcCEEEEE----------------------------eCCEEEEecCCcEEEEEeCCCCcccCCC
Confidence 999999999999999999999999 9999999999999999999999999999
Q ss_pred CCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccc
Q psy14566 310 KSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSL 389 (532)
Q Consensus 310 ~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~ 389 (532)
+++.+|++||++|||||||||++.|.+|+++|..|+ +|+++. |...... ... .
T Consensus 361 ~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~----------------~~i~~~---~~~~~~~----~~~---~- 413 (509)
T smart00350 361 LTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELA----------------KHVVDL---HRYSHPE----PDE---A- 413 (509)
T ss_pred cChhhccCCChHHhCceeeEEEecCCCChHHHHHHH----------------HHHHHh---hcccCcc----ccc---c-
Confidence 999999999999999999999999999999999999 666654 4211100 000 0
Q ss_pred ccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc-cccccChhHHHHHH
Q psy14566 390 QHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-IERLIYHGAAKLLV 468 (532)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-~~P~ls~eA~~~I~ 468 (532)
. ...+ +.++|++|+.|||. +.|.||++|.++|.
T Consensus 414 -------------~-~~~~--------------------------------~~~~l~~yi~~ar~~~~P~ls~~~~~~i~ 447 (509)
T smart00350 414 -------------D-EVPI--------------------------------SQEFLRKYIAYAREKIKPKLSEEAAEKLV 447 (509)
T ss_pred -------------c-cccC--------------------------------CHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 0 0001 23445555599997 99999999999999
Q ss_pred HHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHH
Q psy14566 469 DMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVE 525 (532)
Q Consensus 469 ~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~ 525 (532)
+||+++|+..........+++|+||||||||||||||||++|+.|+++|+..+..+.
T Consensus 448 ~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 448 KAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 999999986543221235799999999999999999999999999987776665554
No 11
>KOG0480|consensus
Probab=100.00 E-value=8.2e-46 Score=391.71 Aligned_cols=201 Identities=42% Similarity=0.620 Sum_probs=164.3
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||+|||||||||||+..|+++||||||||||||||||+ +||||||||||| ||||..|+|+..
T Consensus 439 mLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv------------~aTLnARtSIlA----AANPv~GhYdR~ 502 (764)
T KOG0480|consen 439 MLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGV------------VATLNARTSILA----AANPVGGHYDRK 502 (764)
T ss_pred EEccCceEEechhcccChHhHHHHHHHHHhheehheecce------------EEeecchhhhhh----hcCCcCCccccc
Confidence 7999999999999999999999999999999999999998 689999999999 799999999864
Q ss_pred -----chhchHHHhhccCCHHHHHHHHhHhhch------hhHHHHHhccCCCccCchhhhhhhhhhhhhccccCC-CCCC
Q psy14566 81 -----TEEMSAELMKKHMTESEWNKIYEMSRDR------NLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFP-SIHG 148 (532)
Q Consensus 81 -----~~~l~~~~l~~~~~~srfDlI~~l~~d~------~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~g-g~~~ 148 (532)
+.+|++++| |||||+|.+.+++ .++.||++. |+.-+ . .... ...+
T Consensus 503 ktl~eNi~msApim------SRFDL~FiLlD~~nE~~D~~ia~hIld~-----h~~i~--~----------~~~~~~~~~ 559 (764)
T KOG0480|consen 503 KTLRENINMSAPIM------SRFDLFFILLDDCNEVVDYAIARHILDL-----HRGID--D----------ATERVCVYT 559 (764)
T ss_pred cchhhhcCCCchhh------hhhcEEEEEecCCchHHHHHHHHHHHHH-----hcccc--c----------ccccccccc
Confidence 347999988 9999999886554 355666643 32111 0 1111 1123
Q ss_pred chhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccc
Q psy14566 149 NEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEY 228 (532)
Q Consensus 149 ~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~ 228 (532)
.+.+|+||.|++ +++|.+ +..+++.|..+|.+||++++.+.+...+++|+|||||+|||+||.||+.|.|+
T Consensus 560 ~e~vrkYi~yAR----~~~P~l----s~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~de- 630 (764)
T KOG0480|consen 560 LEQVRKYIRYAR----NFKPKL----SKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDE- 630 (764)
T ss_pred HHHHHHHHHHHH----hcCccc----cHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhh-
Confidence 578999999887 455877 56777888888999999987777788899999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHhcccccc
Q psy14566 229 EFDKMDPHDQVAIHEAMEQQTISIA 253 (532)
Q Consensus 229 ~vd~~d~~~~~~l~eaMeqq~isi~ 253 (532)
+++.|+.+ .+|.|.++-+.+-
T Consensus 631 -vt~~~v~e---a~eLlk~Siv~ve 651 (764)
T KOG0480|consen 631 -VTKEDVEE---AVELLKKSIVRVE 651 (764)
T ss_pred -ccHHHHHH---HHHHHHhhheeec
Confidence 88877655 4666888888875
No 12
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.1e-43 Score=383.28 Aligned_cols=214 Identities=35% Similarity=0.514 Sum_probs=164.4
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||+|||||||||||++.||++||||||||||||||||| ++|||||||||| |+||+||+|+..
T Consensus 380 VlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI------------~atLnARcsvLA----AaNP~~Gryd~~ 443 (682)
T COG1241 380 VLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGI------------TATLNARCSVLA----AANPKFGRYDPK 443 (682)
T ss_pred EEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccce------------eeecchhhhhhh----hhCCCCCcCCCC
Confidence 7999999999999999999999999999999999999999 569999999999 799999999975
Q ss_pred c-----hhchHHHhhccCCHHHHHHHHhH------hhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCC--
Q psy14566 81 T-----EEMSAELMKKHMTESEWNKIYEM------SRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIH-- 147 (532)
Q Consensus 81 ~-----~~l~~~~l~~~~~~srfDlI~~l------~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~-- 147 (532)
. .++++++| ||||+||.+ .+|+.+++|++..|.-.-.+.. ... .....+.
T Consensus 444 ~~~~enI~l~~~lL------SRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~-----~~~------~~~~~~~~~ 506 (682)
T COG1241 444 KTVAENINLPAPLL------SRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET-----ISL------DGVDEVEER 506 (682)
T ss_pred CCHHHhcCCChhHH------hhCCeeEEecCCCCccchHHHHHHHHHHHhccccccc-----ccc------ccccccccC
Confidence 3 46888776 999999976 4567789999987642111111 000 0011111
Q ss_pred CchhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeeccc
Q psy14566 148 GNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDE 227 (532)
Q Consensus 148 ~~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de 227 (532)
..+++|+||.|++. +++|.|. ..+.+.|..+|.+||+.++.......+++|+|||||++||+||+|||+|++.
T Consensus 507 ~~~~lrkYI~YAR~---~v~P~lt----~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~ 579 (682)
T COG1241 507 DFELLRKYISYARK---NVTPVLT----EEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDV 579 (682)
T ss_pred cHHHHHHHHHHHhc---cCCcccC----HHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCC
Confidence 25679999998873 4668874 4555667777999998743322456788999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHhcccccccCcchh
Q psy14566 228 YEFDKMDPHDQVAIHEAMEQQTISIAKRPELA 259 (532)
Q Consensus 228 ~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~ 259 (532)
|++.|+..+..|. +....+++.+|+.+
T Consensus 580 --V~~eD~~eAi~lv---~~~l~~v~~dp~~g 606 (682)
T COG1241 580 --VEEEDVDEAIRLV---DFSLKTVAVDPEKG 606 (682)
T ss_pred --CCHHHHHHHHHHH---HHHHHHhhcCccCC
Confidence 9999988887764 33333466555554
No 13
>KOG0481|consensus
Probab=100.00 E-value=6.9e-42 Score=353.66 Aligned_cols=200 Identities=33% Similarity=0.456 Sum_probs=153.5
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||||||||||||||.+.|||+||||||||||||||||| .++||.|||||| ||||.|||||..
T Consensus 425 VLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGI------------TT~LNSRtSVLA----AANpvfGRyDd~ 488 (729)
T KOG0481|consen 425 VLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI------------TTTLNSRTSVLA----AANPVFGRYDDT 488 (729)
T ss_pred EEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcc------------eeeecchhhhhh----hcCCcccccccc
Confidence 7999999999999999999999999999999999999998 469999999999 799999999975
Q ss_pred c-----hhchHHHhhccCCHHHHHHHHhH------hhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCc
Q psy14566 81 T-----EEMSAELMKKHMTESEWNKIYEM------SRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGN 149 (532)
Q Consensus 81 ~-----~~l~~~~l~~~~~~srfDlI~~l------~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~ 149 (532)
+ .++-+..| ||||.||.+ .+|..++.|+++-|. +. .... .-.....+|...-
T Consensus 489 Kt~~dNIDf~~TIL------SRFDmIFIVKD~h~~~~D~~lAkHVI~vH~-----~~----~n~~--~~~~~~~~~ei~~ 551 (729)
T KOG0481|consen 489 KTGEDNIDFMPTIL------SRFDMIFIVKDEHDEERDITLAKHVINVHV-----SK----ANAQ--TDSQEENEGEIPI 551 (729)
T ss_pred CCcccccchhhhHh------hhccEEEEEeccCcchhhhHHHHHhhhhhc-----cc----cccc--cCccccCCCcccH
Confidence 4 23444444 999999965 467778888886443 21 0000 0000122333335
Q ss_pred hhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeEEEeeccccchhhhccceeeec
Q psy14566 150 EQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRITTRQLESLIRLSEAMAKMECL 225 (532)
Q Consensus 150 ~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~ 225 (532)
+.+++||+|.+ ..|+|.|. .++++-|+..|+.+|.. .+.......+|+|+||||+++|++|+.|||.++
T Consensus 552 ~~~KryI~YcR---~kc~PrLs----~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls 624 (729)
T KOG0481|consen 552 EKLKRYIQYCR---LKCGPRLS----AEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELS 624 (729)
T ss_pred HHHHHHHHHHH---hccCCCCC----HHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCC
Confidence 67999999776 56778884 34444455559999874 333445678999999999999999999999999
Q ss_pred ccccccCCChHHHHHHH
Q psy14566 226 DEYEFDKMDPHDQVAIH 242 (532)
Q Consensus 226 de~~vd~~d~~~~~~l~ 242 (532)
.. .+..|+.++..|+
T Consensus 625 ~~--ate~hV~EA~RLF 639 (729)
T KOG0481|consen 625 PF--ATEAHVEEALRLF 639 (729)
T ss_pred cc--ccHHHHHHHHHHH
Confidence 99 8888887776664
No 14
>KOG0479|consensus
Probab=100.00 E-value=1.8e-41 Score=354.70 Aligned_cols=211 Identities=32% Similarity=0.490 Sum_probs=162.6
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||+||+||||||||++.||++|||+||||||+|||||||+ +||||||||| ||||.||+|+..
T Consensus 395 VLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHa------------sLNARCSVlA----AANPvyG~Yd~~ 458 (818)
T KOG0479|consen 395 VLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHA------------SLNARCSVLA----AANPVYGQYDQS 458 (818)
T ss_pred EEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchh------------hhccceeeee----ecCccccccCCC
Confidence 799999999999999999999999999999999999999975 8999999999 799999999976
Q ss_pred chh-----chHHHhhccCCHHHHHHHHhH------hhchhhHHHHHhccC---CCccCch----------------hhhh
Q psy14566 81 TEE-----MSAELMKKHMTESEWNKIYEM------SRDRNLYQNLTSSLF---PSIHGNE----------------QIKK 130 (532)
Q Consensus 81 ~~~-----l~~~~l~~~~~~srfDlI~~l------~~d~~i~~~l~~S~~---p~i~g~~----------------~ik~ 130 (532)
..+ ++..+| |||||+|.+ ..|+.+.+|+++-|- |.-...+ +.++
T Consensus 459 k~P~eNIgLpDSLL------SRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~ 532 (818)
T KOG0479|consen 459 KTPMENIGLPDSLL------SRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKK 532 (818)
T ss_pred CChhhccCCcHHHH------hhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccc
Confidence 543 344443 999999965 466788999998762 2211001 1122
Q ss_pred hhhhhhhhccccCCCCCC-------chhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCcee
Q psy14566 131 DRNLYQNLTSSLFPSIHG-------NEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWR 203 (532)
Q Consensus 131 ~i~l~~~l~~~l~gg~~~-------~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt 203 (532)
.--.+.+....+.|+... -.++|+||||++. .++|.| +.++...|...|..||+.+..+......|
T Consensus 533 et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~---ri~P~L----t~ea~e~Ia~~Y~~LR~~d~~~d~~rt~P 605 (818)
T KOG0479|consen 533 ETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKS---RIKPKL----TQEAAEYIAEEYTDLRNDDSRKDQERTSP 605 (818)
T ss_pred cchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHh---hcCccc----cHHHHHHHHHHHhhhhccccccccccccC
Confidence 222233444455554322 2468999998862 245766 45677788888999998754445567789
Q ss_pred EEEeeccccchhhhccceeeecccccccCCChHHHHHHH
Q psy14566 204 ITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIH 242 (532)
Q Consensus 204 ~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~ 242 (532)
+|.|+||++|||+.||||++++.+ |++.|+..++.|.
T Consensus 606 iTARtLETlIRLaTAhAKaRlSk~--V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 606 ITARTLETLIRLATAHAKARLSKV--VEKDDAEAAVNLL 642 (818)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcce--eehhhHHHHHHHH
Confidence 999999999999999999999999 9999998777653
No 15
>KOG0482|consensus
Probab=100.00 E-value=1.6e-40 Score=343.19 Aligned_cols=200 Identities=35% Similarity=0.537 Sum_probs=154.7
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||+|||||||||||++.||++|||+|||||||||||||+ +|||||||||| ||||.||+|++.
T Consensus 436 VLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~------------TtLNAR~sILa----AANPayGRYnpr 499 (721)
T KOG0482|consen 436 VLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGIN------------TTLNARTSILA----AANPAYGRYNPR 499 (721)
T ss_pred EEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccc------------cchhhhHHhhh----hcCccccccCcc
Confidence 79999999999999999999999999999999999999994 59999999999 799999999974
Q ss_pred -----chhchHHHhhccCCHHHHHHHHhHh------hchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCc
Q psy14566 81 -----TEEMSAELMKKHMTESEWNKIYEMS------RDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGN 149 (532)
Q Consensus 81 -----~~~l~~~~l~~~~~~srfDlI~~l~------~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~ 149 (532)
+.++++++| ||||+++.+. .|..+++|+. .+|.|+.-.. .-|..++ .
T Consensus 500 rs~e~NI~LPaALL------SRFDll~Li~D~pdrd~D~~LA~HiT-----yVH~H~~qp~----------~~fepl~-~ 557 (721)
T KOG0482|consen 500 RSPEQNINLPAALL------SRFDLLWLIQDRPDRDNDLRLAQHIT-----YVHQHEEQPP----------LDFEPLD-P 557 (721)
T ss_pred cChhHhcCCcHHHH------HhhhhhhhhccCCcccchHHHHHHhH-----hhhccCCCCC----------ccCCCCC-H
Confidence 447888887 9999999773 3445666665 4565543221 1111121 4
Q ss_pred hhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeeccccc
Q psy14566 150 EQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYE 229 (532)
Q Consensus 150 ~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~ 229 (532)
..+|.||.+++++. |.+. . +-+..+...|++||+... . +...--+|+|.|.+++||+.|+||++++|.
T Consensus 558 ~~mR~yI~~ak~~~----P~vp---~-~l~dyi~~AYv~~Rrea~-~-~~~~t~ttpRtLL~IlRls~AlarLRls~~-- 625 (721)
T KOG0482|consen 558 NLMRRYISLAKRKN----PVVP---E-ALADYITGAYVELRREAR-S-SKDFTYTTPRTLLGILRLSTALARLRLSDS-- 625 (721)
T ss_pred HHHHHHHHHHhhcC----CCCC---H-HHHHHHHHHHHHHHHHhh-c-cCCCcccCHHHHHHHHHHHHHHHHhhhccc--
Confidence 67999999887665 7662 2 334556666999998643 1 222223489999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHhcccccc
Q psy14566 230 FDKMDPHDQVAIHEAMEQQTISIA 253 (532)
Q Consensus 230 vd~~d~~~~~~l~eaMeqq~isi~ 253 (532)
|++-|+.++..| |+=++.|+-
T Consensus 626 V~~~DV~EALRL---me~sK~sL~ 646 (721)
T KOG0482|consen 626 VEEDDVNEALRL---MEMSKDSLY 646 (721)
T ss_pred cchhhHHHHHHH---HHhhhcccc
Confidence 999888877666 666777765
No 16
>KOG0477|consensus
Probab=100.00 E-value=3.9e-40 Score=346.88 Aligned_cols=215 Identities=29% Similarity=0.419 Sum_probs=161.3
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||+|||||||||||++.||++||||||||+|||+|||| |++|+|||+|+| |+||..|||++.
T Consensus 543 VLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGI------------VtsLqArctvIA----AanPigGRY~~s 606 (854)
T KOG0477|consen 543 VLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGI------------VTSLQARCTVIA----AANPIGGRYNPS 606 (854)
T ss_pred EEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhH------------HHHHHhhhhhhe----ecCCCCCccCCc
Confidence 7999999999999999999999999999999999999999 789999999999 799999999864
Q ss_pred -----chhchHHHhhccCCHHHHHHHHh------HhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCC--C
Q psy14566 81 -----TEEMSAELMKKHMTESEWNKIYE------MSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSI--H 147 (532)
Q Consensus 81 -----~~~l~~~~l~~~~~~srfDlI~~------l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~--~ 147 (532)
+.+++.+.| ||||.... ...|.++++.++.||..+...+ |..-.+.+ .++-..+ .
T Consensus 607 ~tFaqNV~ltePIl------SRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~---~~~~~~~e---~~~~~~v~~i 674 (854)
T KOG0477|consen 607 LTFAQNVDLTEPIL------SRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSN---KEEDGLEE---PQMPARVEPI 674 (854)
T ss_pred cchhhccccccchh------hhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcc---cccCcccc---cccccccccC
Confidence 234555554 89996543 3678899999999997543332 11111100 0111111 1
Q ss_pred CchhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeeccc
Q psy14566 148 GNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDE 227 (532)
Q Consensus 148 ~~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de 227 (532)
+++.+|+||+|++. .++|-|. .....-+...|..||+.+- .++++|+|+|++||++|++||||||++++.
T Consensus 675 pq~lLrkyI~yar~---~v~PkL~----q~d~~K~s~vya~lRkES~---~tGs~piTvRHieS~ir~seAhArm~Lr~~ 744 (854)
T KOG0477|consen 675 PQELLRKYIIYARE---KVRPKLN----QMDMDKISSVYADLRKESM---ATGSLPITVRHIESMIRMSEAHARMHLREY 744 (854)
T ss_pred hHHHHHHHHHHHHH---hcccccc----cccHHHHHHHHHHHHhhcc---ccCCchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 26889999998874 4567663 1222235566999997632 345699999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHhcccccc
Q psy14566 228 YEFDKMDPHDQVAIHEAMEQQTISIA 253 (532)
Q Consensus 228 ~~vd~~d~~~~~~l~eaMeqq~isi~ 253 (532)
|.....+...++.+..+|.-|+.|+-
T Consensus 745 V~~~d~~~AI~v~ldSfi~aQk~Sv~ 770 (854)
T KOG0477|consen 745 VTEEDVDMAIRVMLDSFISAQKFSVM 770 (854)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43334444456677889999999886
No 17
>KOG0478|consensus
Probab=100.00 E-value=2e-39 Score=345.71 Aligned_cols=199 Identities=32% Similarity=0.503 Sum_probs=155.1
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||||||||||||||+++.|..|||+|||||+||||||| +|+||||||||| +|||..++|++.
T Consensus 523 VLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGI------------I~sLNAR~SVLA----aANP~~skynp~ 586 (804)
T KOG0478|consen 523 VLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGI------------IASLNARCSVLA----AANPIRSKYNPN 586 (804)
T ss_pred EEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcce------------eeeccccceeee----eeccccccCCCC
Confidence 7999999999999999999999999999999999999999 899999999999 599999999874
Q ss_pred -----chhchHHHhhccCCHHHHHHHHhHh------hchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCc
Q psy14566 81 -----TEEMSAELMKKHMTESEWNKIYEMS------RDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGN 149 (532)
Q Consensus 81 -----~~~l~~~~l~~~~~~srfDlI~~l~------~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~ 149 (532)
+.++++++| ||||+||.+. .|+.+++||++-++- ...+.+-.. ...
T Consensus 587 k~i~eNI~LpptLL------SRFDLIylllD~~DE~~Dr~La~HivsLy~e-----~~~~~~~~~------------~d~ 643 (804)
T KOG0478|consen 587 KSIIENINLPPTLL------SRFDLIFLLLDKPDERSDRRLADHIVALYPE-----TGEKQGSEA------------IDM 643 (804)
T ss_pred CchhhccCCChhhh------hhhcEEEEEecCcchhHHHHHHHHHHHhccc-----ccccchhHH------------HhH
Confidence 346888877 9999999763 356677777754331 111111000 112
Q ss_pred hhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeeccccc
Q psy14566 150 EQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYE 229 (532)
Q Consensus 150 ~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~ 229 (532)
..+|-||.|++ ++++|-+ ..++++.+...|..+|.. | ...+..++|+||+||++|++||||+|++++.
T Consensus 644 ~~lr~yi~yAr---k~i~p~l----~~ea~~~l~~ayvd~rk~-~--~~~~~itat~rQlesLiRlsEahak~r~s~~-- 711 (804)
T KOG0478|consen 644 NLLRDYIRYAR---KNIHPAL----SPEASQALIQAYVDMRKI-G--EGAGQITATPRQLESLIRLSEAHAKMRLSNR-- 711 (804)
T ss_pred HHHHHHHHHHh---ccCCccc----cHHHHHHHHHHhhhhhhh-c--ccccccchhHHHHHHHHHHHHHHHHhhcccc--
Confidence 45789998776 4556666 445666666669999864 2 1222478899999999999999999999999
Q ss_pred ccCCChHHHHHHH-HHHHhccc
Q psy14566 230 FDKMDPHDQVAIH-EAMEQQTI 250 (532)
Q Consensus 230 vd~~d~~~~~~l~-eaMeqq~i 250 (532)
++..|..+++.|+ +||.|...
T Consensus 712 ve~~dV~eA~~l~R~aL~~~a~ 733 (804)
T KOG0478|consen 712 VEEIDVEEAVRLLREALKQSAT 733 (804)
T ss_pred cchhhHHHHHHHHHHHhcccCC
Confidence 9999999999887 78887443
No 18
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=6.6e-37 Score=317.21 Aligned_cols=198 Identities=37% Similarity=0.573 Sum_probs=133.6
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
||||||||||||||||++.|+.+||||||||+|||+|||| +++||+||+|+| ++||.+|+|+..
T Consensus 118 vlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi------------~~~l~ar~svla----a~NP~~g~~~~~ 181 (331)
T PF00493_consen 118 VLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGI------------VTTLNARCSVLA----AANPKFGRYDPN 181 (331)
T ss_dssp HHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSS------------EEEEE---EEEE----EE--TT--S-TT
T ss_pred hcccCceeeecccccccchHHHHHHHHHHcCeeccchhhh------------cccccchhhhHH----HHhhhhhhcchh
Confidence 6899999999999999999999999999999999999998 679999999999 799999999864
Q ss_pred ch-----hchHHHhhccCCHHHHHHHHhHh------hchhhHHHHHhccCCCccC-chhhhhhhhhhhhhccccCCCCCC
Q psy14566 81 TE-----EMSAELMKKHMTESEWNKIYEMS------RDRNLYQNLTSSLFPSIHG-NEQIKKDRNLYQNLTSSLFPSIHG 148 (532)
Q Consensus 81 ~~-----~l~~~~l~~~~~~srfDlI~~l~------~d~~i~~~l~~S~~p~i~g-~~~ik~~i~l~~~l~~~l~gg~~~ 148 (532)
.. ++++++ .||||+||.+. .|..+++|+++.+...-.. ....+.. .....
T Consensus 182 ~~~~~ni~l~~~L------LSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~------------~~~~~ 243 (331)
T PF00493_consen 182 KSLSENINLPPPL------LSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKN------------DKPIS 243 (331)
T ss_dssp S-CGCCT-S-CCC------HCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SS------------S-TT-
T ss_pred hhhHHhcccchhh------HhhcCEEEEeccccccccccccceEEEecccccccccccccccc------------CCccC
Confidence 32 344444 48999998663 3456778888765431100 0000000 01122
Q ss_pred chhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccc
Q psy14566 149 NEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEY 228 (532)
Q Consensus 149 ~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~ 228 (532)
.+.+|+||+|++ .+++|.+. ..+.++|..+|.++|..... ...+.++|+|+|||++||+||+||++++++
T Consensus 244 ~~~lr~yI~yar---~~~~P~ls----~ea~~~I~~~Yv~lR~~~~~--~~~~~~iT~R~LeSLIRLseA~AKl~lr~~- 313 (331)
T PF00493_consen 244 EDLLRKYIAYAR---QNIHPVLS----EEAKELIINYYVELRKESKS--NNKSIPITIRQLESLIRLSEAHAKLRLRDE- 313 (331)
T ss_dssp HCCCHHHHHHHH---HHC--EE-----HHCHHHHHHHHCCCCHCHHC--HSS-B-SSCCCCCHHHHHHHHHHHCTTSSE-
T ss_pred HHHHHHHHHHHH---hhcccccC----HHHHHHHHHHHHHhcccccc--cccccccchhhHHHHHHHHHHHHHHhccCc-
Confidence 467899999886 24568773 44567777779999986421 145678899999999999999999999999
Q ss_pred cccCCChHHHHHHHH
Q psy14566 229 EFDKMDPHDQVAIHE 243 (532)
Q Consensus 229 ~vd~~d~~~~~~l~e 243 (532)
|+..|+..++.|.+
T Consensus 314 -V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 314 -VTEEDVEEAIRLFE 327 (331)
T ss_dssp -CSHHHHHHHHHHHH
T ss_pred -eeHHHHHHHHHHHH
Confidence 99999888877754
No 19
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=5.6e-34 Score=319.21 Aligned_cols=222 Identities=25% Similarity=0.379 Sum_probs=165.5
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
|+||||+|||||||+|++.+|.+|||+||||+|||+|||+ +++|++||+||| ++||++|+|+..
T Consensus 554 vlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi------------~~tL~ar~rVIA----AaNP~~gryd~~ 617 (915)
T PTZ00111 554 VLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI------------VATLKAETAILA----SCNPINSRYNKN 617 (915)
T ss_pred EEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc------------ceecCCCeEEEE----EcCCcccccCcc
Confidence 5899999999999999999999999999999999999998 579999999999 799999999974
Q ss_pred c-----hhchHHHhhccCCHHHHHHHHhH------hhchhhHHHHHhccCCCc---cCchhh---hhhhhhhhhhccccC
Q psy14566 81 T-----EEMSAELMKKHMTESEWNKIYEM------SRDRNLYQNLTSSLFPSI---HGNEQI---KKDRNLYQNLTSSLF 143 (532)
Q Consensus 81 ~-----~~l~~~~l~~~~~~srfDlI~~l------~~d~~i~~~l~~S~~p~i---~g~~~i---k~~i~l~~~l~~~l~ 143 (532)
. .++++++| ||||+||.+ ..|..+++||+..|.-.. .+++.. +........ ..+.
T Consensus 618 ~s~~eni~Lp~~LL------SRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~--~~~~ 689 (915)
T PTZ00111 618 KAVIENINISPSLF------TRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVED--ESLR 689 (915)
T ss_pred cCcccccCCChHHh------hhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccc--cccc
Confidence 3 36788877 999999976 466778999987653210 011100 000000000 0000
Q ss_pred C--C--CCCchhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccC---------------------CCCC
Q psy14566 144 P--S--IHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDG---------------------NSSS 198 (532)
Q Consensus 144 g--g--~~~~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g---------------------~~ss 198 (532)
+ . ....+.+|+||+|++ .+++|.|. .++.++|..+|++||+... .++.
T Consensus 690 ~~~~~~~i~~~lLrkYI~YAR---~~~~P~Ls----~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (915)
T PTZ00111 690 SEKDYNKNDLDMLRMYIKFSK---LHCFPKLS----DEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSG 762 (915)
T ss_pred cccccCCCCHHHHHHHHHHHh---ccCCCCCC----HHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccc
Confidence 1 0 012578999999887 35779884 4566888888999997411 1122
Q ss_pred CCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHH-HHHHhcccccccCcchh
Q psy14566 199 KATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIH-EAMEQQTISIAKRPELA 259 (532)
Q Consensus 199 ~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~-eaMeqq~isi~~~~~~~ 259 (532)
...+++|+|||||+|||+||+|||+|+++ |++.|+.+++.|. ++|.| ++.+|++|
T Consensus 763 ~~~i~iT~RqLEsLIRLsEA~AK~rLs~~--Vt~~Dv~~Ai~L~~~sl~~----~~~DpetG 818 (915)
T PTZ00111 763 TRMIYVSSRMISSIIRISVSLARMRLSTV--VTPADALQAVQIVKSSTFQ----SLVDPTTG 818 (915)
T ss_pred CCcccccHHHHHHHHHHHHHHhhhcCcCc--ccHHHHHHHHHHHHHHHhh----hcccccCC
Confidence 34688999999999999999999999999 9999999988875 45555 56677776
No 20
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.93 E-value=5.8e-27 Score=256.06 Aligned_cols=197 Identities=39% Similarity=0.527 Sum_probs=149.5
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
++||+|+|||||||+|++.++.+|||+||||+|+|+|+|+ .++|+++++|+| ++||.+|+|+..
T Consensus 297 ~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~------------~~~l~~~~~viA----a~NP~~g~y~~~ 360 (509)
T smart00350 297 VLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGI------------TTTLNARCSVLA----AANPIGGRYDPK 360 (509)
T ss_pred EecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCE------------EEEecCCcEEEE----EeCCCCcccCCC
Confidence 4799999999999999999999999999999999999997 568999999999 799999999864
Q ss_pred c-----hhchHHHhhccCCHHHHHHHHhH------hhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCc
Q psy14566 81 T-----EEMSAELMKKHMTESEWNKIYEM------SRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGN 149 (532)
Q Consensus 81 ~-----~~l~~~~l~~~~~~srfDlI~~l------~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~ 149 (532)
. .++++++| +|||+||.+ ..|..+++|+++.+...-. ... .-+......
T Consensus 361 ~~~~~n~~l~~~lL------sRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~--~~~------------~~~~~~~~~ 420 (509)
T smart00350 361 LTPEENIDLPAPIL------SRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHP--EPD------------EADEVPISQ 420 (509)
T ss_pred cChhhccCCChHHh------CceeeEEEecCCCChHHHHHHHHHHHHhhcccCc--ccc------------ccccccCCH
Confidence 2 26777777 899999876 3445667777654321100 000 001112235
Q ss_pred hhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeeccccc
Q psy14566 150 EQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYE 229 (532)
Q Consensus 150 ~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~ 229 (532)
+.+|+||+|+++ +++|.+ +.+..++|..+|.++|.....+.....+++|+|++|+++|++||+|++++++.
T Consensus 421 ~~l~~yi~~ar~---~~~P~l----s~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~-- 491 (509)
T smart00350 421 EFLRKYIAYARE---KIKPKL----SEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDV-- 491 (509)
T ss_pred HHHHHHHHHHHh---cCCCCC----CHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCc--
Confidence 789999998874 244766 34566778888999996522111124578899999999999999999999999
Q ss_pred ccCCChHHHHHHH
Q psy14566 230 FDKMDPHDQVAIH 242 (532)
Q Consensus 230 vd~~d~~~~~~l~ 242 (532)
|+..|+..++.|.
T Consensus 492 V~~~Dv~~ai~l~ 504 (509)
T smart00350 492 VEEADVEEAIRLL 504 (509)
T ss_pred cCHHHHHHHHHHH
Confidence 8888888777664
No 21
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=1.1e-11 Score=135.00 Aligned_cols=91 Identities=27% Similarity=0.324 Sum_probs=67.6
Q ss_pred hccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceee
Q psy14566 217 EAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASIL 296 (532)
Q Consensus 217 EA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svl 296 (532)
.|+-=+.|.|| +++++...+..|+++||.+.+.|. .+|...++++++.++
T Consensus 293 lA~~GvLfLDE--i~e~~~~~~~~L~~~LE~~~v~i~----------------------------r~g~~~~~pa~frlI 342 (499)
T TIGR00368 293 LAHNGVLFLDE--LPEFKRSVLDALREPIEDGSISIS----------------------------RASAKIFYPARFQLV 342 (499)
T ss_pred ccCCCeEecCC--hhhCCHHHHHHHHHHHHcCcEEEE----------------------------ecCcceeccCCeEEE
Confidence 33333466677 666666666667777777766666 899999999999999
Q ss_pred cccCCC-CCCCCCCC----Ccccc-----ccCCCcccccccEEEEecccCC
Q psy14566 297 AAANPI-GGQYDRTK----SLQHN-----VSLSAPIMSRFDLFFVLIDECN 337 (532)
Q Consensus 297 Aaanp~-~g~~~~~~----~~~~n-----i~l~~~LLSRFDLif~l~D~~d 337 (532)
||+||- -|+|+... .-..+ -.|+.|||+||||.+.+.+-..
T Consensus 343 aa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~ 393 (499)
T TIGR00368 343 AAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPP 393 (499)
T ss_pred EecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCH
Confidence 999996 68886521 11222 3799999999999999887654
No 22
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.32 E-value=1.2e-11 Score=138.96 Aligned_cols=172 Identities=15% Similarity=0.198 Sum_probs=117.2
Q ss_pred cceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecc
Q psy14566 219 MAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAA 298 (532)
Q Consensus 219 ~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAa 298 (532)
+--+.+.|| ++.++...+..|+++|+.+.+.|. +.|...++++++.|+|+
T Consensus 126 ~~GiL~lDE--i~~l~~~~q~~Ll~~le~g~~~v~----------------------------r~g~~~~~~~~~~lIat 175 (633)
T TIGR02442 126 HRGILYIDE--VNLLDDHLVDVLLDAAAMGVNRVE----------------------------REGLSVSHPARFVLIGT 175 (633)
T ss_pred CCCeEEeCh--hhhCCHHHHHHHHHHHhcCCEEEE----------------------------ECCceeeecCCeEEEEe
Confidence 333566677 777777667777777777766666 89999999999999999
Q ss_pred cCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhc
Q psy14566 299 ANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELAL 378 (532)
Q Consensus 299 anp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~ 378 (532)
+||..| .|+++|++||+|.+.+.+..+.+.+..+. .+.+.. ...
T Consensus 176 ~np~eg------------~l~~~L~dR~~l~i~v~~~~~~~~~~~il----------------~~~~~~---~~~----- 219 (633)
T TIGR02442 176 MNPEEG------------DLRPQLLDRFGLCVDVAAPRDPEERVEII----------------RRRLAF---DAD----- 219 (633)
T ss_pred cCCCCC------------CCCHHHHhhcceEEEccCCCchHHHHHHH----------------HHHHhh---ccC-----
Confidence 999654 38899999999888777655554443333 111110 000
Q ss_pred cccccccccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhcccc-
Q psy14566 379 NVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIER- 457 (532)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P- 457 (532)
.. . ... .| ..+...+.+++..+|...|
T Consensus 220 ----~~--------------------------~---~~~----------~~---------~~~~~~l~~~i~~ar~~~~~ 247 (633)
T TIGR02442 220 ----PE--------------------------A---FAA----------RW---------AAEQEELRNRIARARSLLPS 247 (633)
T ss_pred ----cH--------------------------H---HHH----------Hh---------hhhHHHHHHHHHHHHHhCCC
Confidence 00 0 000 00 0112233445577876555
Q ss_pred -ccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCc
Q psy14566 458 -LIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETN 520 (532)
Q Consensus 458 -~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~ 520 (532)
.+++++.++|.++|..++-. +.|....++|+|.|+|.|+-++.|+++|+..
T Consensus 248 V~is~~~~~~l~~~~~~~~i~------------s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~ 299 (633)
T TIGR02442 248 VRISDSLIRFISELCIEFGVD------------GHRADIVMARAARALAALDGRRRVTAEDVRE 299 (633)
T ss_pred CCCCHHHHHHHHHHHHHhCCC------------CccHHHHHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 78999999999999887321 4799999999999999999999999766543
No 23
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.24 E-value=3.6e-11 Score=133.94 Aligned_cols=219 Identities=17% Similarity=0.101 Sum_probs=149.7
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCC------CCCCCceeEEEe---eccccch------hhhccceeeecccccccC
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGN------SSSKATWRITTR---QLESLIR------LSEAMAKMECLDEYEFDK 232 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~------~ss~~glt~T~R---qlESliR------LsEA~Akv~~~de~~vd~ 232 (532)
++|.|.||++|+.+.+. +..+.++.+. +.+...++..+. .+.+..| |.+|+--+.+.|| ++.
T Consensus 19 vLl~G~~GtgKs~lar~-l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDE--i~r 95 (589)
T TIGR02031 19 VAIRARAGTGKTALARA-LAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDM--ANL 95 (589)
T ss_pred EEEEcCCCcHHHHHHHH-HHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccc--hhh
Confidence 78889999999999988 6666543110 001111111110 0112223 2334334578899 999
Q ss_pred CChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCc
Q psy14566 233 MDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSL 312 (532)
Q Consensus 233 ~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~ 312 (532)
++...+..|+++|+++.++|. +.|+..++++++.|||+.||..+
T Consensus 96 l~~~~q~~Ll~al~~g~v~i~----------------------------r~G~~~~~p~~f~lIAt~np~e~-------- 139 (589)
T TIGR02031 96 LDDGLSNRLLQALDEGVVIVE----------------------------REGISVVHPAKFALIATYDPAEG-------- 139 (589)
T ss_pred CCHHHHHHHHHHHHcCCeEEE----------------------------ECCCceeecCceEEEEecCCccc--------
Confidence 999999999999999999998 99999999999999999999841
Q ss_pred cccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhccccccccccccccc
Q psy14566 313 QHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHN 392 (532)
Q Consensus 313 ~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~ 392 (532)
.-.|++.|+.||++.+.+.+.++.+....|. ++.+.. .....
T Consensus 140 --~g~L~~~LldRf~l~v~~~~~~~~~er~eil----------------~~~~~~---------------~~~~~----- 181 (589)
T TIGR02031 140 --GGGLPDHLLDRLALHVSLEDVASQDLRVEIV----------------RRERCN---------------EVFRM----- 181 (589)
T ss_pred --cCCCCHHHHHhccCeeecCCCCCHHHHHHHH----------------HHHHHh---------------hhhhc-----
Confidence 1379999999999988888777654433433 111100 00000
Q ss_pred cccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhcccc--ccChhHHHHHHHH
Q psy14566 393 VSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIER--LIYHGAAKLLVDM 470 (532)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P--~ls~eA~~~I~~~ 470 (532)
..+..++.+++.+||..-| .++++..+.|.++
T Consensus 182 ----------------------------------------------~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~ 215 (589)
T TIGR02031 182 ----------------------------------------------NDELELLRGQIEAARELLPQVTISAEQVKELVLT 215 (589)
T ss_pred ----------------------------------------------chhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHH
Confidence 0011233444478876555 7899999999999
Q ss_pred HHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCch
Q psy14566 471 YTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNT 521 (532)
Q Consensus 471 Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~ 521 (532)
++.++- -+.|....++|.|+|+|.++-++.|+++|+..+
T Consensus 216 ~~~~gv------------~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a 254 (589)
T TIGR02031 216 AASLGI------------SGHRADLFAVRAAKAHAALHGRTEVTEEDLKLA 254 (589)
T ss_pred HHHcCC------------CCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 976532 137999999999999999999999997665443
No 24
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.18 E-value=1.4e-10 Score=126.13 Aligned_cols=92 Identities=27% Similarity=0.400 Sum_probs=73.1
Q ss_pred hhhccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccce
Q psy14566 215 LSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARAS 294 (532)
Q Consensus 215 LsEA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~s 294 (532)
++.|+--+.+.|| ++.++...+..|+++||++.+.|. ..|...++++++-
T Consensus 290 l~~A~gGvLfLDE--i~e~~~~~~~~L~~~LE~g~v~I~----------------------------r~g~~~~~pa~f~ 339 (506)
T PRK09862 290 ISLAHNGVLFLDE--LPEFERRTLDALREPIESGQIHLS----------------------------RTRAKITYPARFQ 339 (506)
T ss_pred hhhccCCEEecCC--chhCCHHHHHHHHHHHHcCcEEEe----------------------------cCCcceeccCCEE
Confidence 4555555678888 888888888888888888888887 9999999999999
Q ss_pred eecccCCC-CCCCCCCC--Cccccc-----cCCCcccccccEEEEecccC
Q psy14566 295 ILAAANPI-GGQYDRTK--SLQHNV-----SLSAPIMSRFDLFFVLIDEC 336 (532)
Q Consensus 295 vlAaanp~-~g~~~~~~--~~~~ni-----~l~~~LLSRFDLif~l~D~~ 336 (532)
++||+||. .|.|.... ...+++ .|+.|||+||||.+.+....
T Consensus 340 lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 340 LVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred EEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 99999997 78886533 223344 79999999999988777554
No 25
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.01 E-value=4.9e-09 Score=109.11 Aligned_cols=62 Identities=18% Similarity=0.063 Sum_probs=49.0
Q ss_pred hhhhhhhcccc--ccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCc
Q psy14566 447 RKTVVEKVIER--LIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETN 520 (532)
Q Consensus 447 kyi~yar~~~P--~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~ 520 (532)
+.|..+|..-| .+++++.++|.+....+|.. ++|-...++|.|+|+|-++-|+.|+++|+..
T Consensus 241 ~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~------------s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~ 304 (337)
T TIGR02030 241 AKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD------------GLRGELTLNRAAKALAAFEGRTEVTVDDIRR 304 (337)
T ss_pred HHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC------------CCcHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 33466665333 58899999999999877621 4699999999999999999999999776653
No 26
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.75 E-value=5e-08 Score=101.76 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=112.4
Q ss_pred hccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceee
Q psy14566 217 EAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASIL 296 (532)
Q Consensus 217 EA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svl 296 (532)
+|+--+.+.|| ++.++...+..|.++|+.+.+++. +.|....+++|+.++
T Consensus 142 ~A~~GiL~lDE--InrL~~~~Q~~LLeam~e~~~~ie----------------------------r~G~s~~~p~rfivi 191 (350)
T CHL00081 142 KANRGILYVDE--VNLLDDHLVDILLDSAASGWNTVE----------------------------REGISIRHPARFVLV 191 (350)
T ss_pred ecCCCEEEecC--hHhCCHHHHHHHHHHHHhCCeEEe----------------------------eCCeeeecCCCEEEE
Confidence 33334466777 777777777777777777666666 789999999999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhh
Q psy14566 297 AAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMEL 376 (532)
Q Consensus 297 Aaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~ 376 (532)
|+.||..|. |++.|+.||.+.+.+....+.+....|- ++.... ..
T Consensus 192 aT~np~eg~------------l~~~LldRf~l~i~l~~~~~~~~e~~il----------------~~~~~~-------~~ 236 (350)
T CHL00081 192 GSGNPEEGE------------LRPQLLDRFGMHAEIRTVKDPELRVKIV----------------EQRTSF-------DK 236 (350)
T ss_pred eccCcccCC------------CCHHHHHHhCceeecCCCCChHHHHHHH----------------Hhhhcc-------cc
Confidence 999998542 8999999999988877755544443333 111000 00
Q ss_pred hccccccccccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc--
Q psy14566 377 ALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-- 454 (532)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-- 454 (532)
.... ....|-.. ......-|.-+|.
T Consensus 237 -----~~~~-----------------------------~~~~~~~~-------------------~~~~~~~I~~ar~~~ 263 (350)
T CHL00081 237 -----NPQE-----------------------------FREKYEES-------------------QEELRSKIVAAQNLL 263 (350)
T ss_pred -----Chhh-----------------------------hhhhhccc-------------------cccCHHHHHHHHHhc
Confidence 0000 00000000 0000001122232
Q ss_pred cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCc
Q psy14566 455 IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETN 520 (532)
Q Consensus 455 ~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~ 520 (532)
-.-.++++..++|.+....+|.. ++|--..++|.|+|+|=++=|+.|+++|+..
T Consensus 264 ~~V~v~~~~~~yi~~l~~~~~~~------------s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~ 317 (350)
T CHL00081 264 PKVEIDYDLRVKISQICSELDVD------------GLRGDIVTNRAAKALAAFEGRTEVTPKDIFK 317 (350)
T ss_pred CCCccCHHHHHHHHHHHHHHCCC------------CChHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 23467888899999888877642 4899999999999999999999999766543
No 27
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.50 E-value=1.2e-06 Score=91.23 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=41.9
Q ss_pred cccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccC
Q psy14566 457 RLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCET 519 (532)
Q Consensus 457 P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~ 519 (532)
-.++++..++|.+.-...|.. ++|---+|+|.|.|+|=+.=++.|+++|+.
T Consensus 250 V~v~~~~~~yi~~l~~~~~~~------------s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~ 300 (334)
T PRK13407 250 LKTPNTVLHDCAALCIALGSD------------GLRGELTLLRAARALAAFEGAEAVGRSHLR 300 (334)
T ss_pred cccCHHHHHHHHHHHHHHCCC------------CchHHHHHHHHHHHHHHHcCCCeeCHHHHH
Confidence 456888889998888777653 367777899999999999999999987764
No 28
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.43 E-value=1.4e-07 Score=103.20 Aligned_cols=81 Identities=25% Similarity=0.300 Sum_probs=65.2
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCC-CCCCCCc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPR-FGGGELH 80 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~-~g~~~~~ 80 (532)
+|++|++||||++++++..+..|+++||++.+.|.++|. ..++++++.++| ++||. .|.|...
T Consensus 293 lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~------------~~~~pa~frlIa----a~Npcpcg~~~~~ 356 (499)
T TIGR00368 293 LAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASA------------KIFYPARFQLVA----AMNPCPCGHYGGK 356 (499)
T ss_pred ccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCc------------ceeccCCeEEEE----ecCCcccCcCCCC
Confidence 799999999999999999999999999999999999885 246788999998 68986 4555431
Q ss_pred --------------chhchHHHhhccCCHHHHHHHHhH
Q psy14566 81 --------------TEEMSAELMKKHMTESEWNKIYEM 104 (532)
Q Consensus 81 --------------~~~l~~~~l~~~~~~srfDlI~~l 104 (532)
...++.+++ +|||+.+.+
T Consensus 357 ~~~c~c~~~~~~~y~~~is~pll------DR~dl~~~~ 388 (499)
T TIGR00368 357 NTHCRCSPQQISRYWNKLSGPFL------DRIDLSVEV 388 (499)
T ss_pred cccccCCHHHHHHHhhhccHhHH------hhCCEEEEE
Confidence 113555555 899988765
No 29
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.39 E-value=1.1e-06 Score=98.66 Aligned_cols=168 Identities=16% Similarity=0.138 Sum_probs=113.4
Q ss_pred hhhccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccce---eeecc
Q psy14566 215 LSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVR---ATLNA 291 (532)
Q Consensus 215 LsEA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~---~~l~a 291 (532)
+.+|+-=..+.|+ ++.++...+..|+++|+++.+.+....+. ..|.. ...++
T Consensus 213 L~~AngGtL~Lde--i~~L~~~~q~~Ll~~L~~~~i~~~g~~e~-----------------------~~~~~~~~~~ip~ 267 (608)
T TIGR00764 213 IHRAHKGVLYIDE--IKTMPLEVQQYLLTALQDKKFPITGQSEN-----------------------SSGAMVRTEPVPC 267 (608)
T ss_pred eEECCCCEEEEEC--hHhCCHHHHHHHHHHHHhCcEEecCcccc-----------------------ccccccCCCCCcc
Confidence 3344444567788 88999888889999999999988621110 11222 24578
Q ss_pred cceeecccCCCCCCCCCCCCccccccCCCccccccc---EEEEecccCCchhhccccCccchhhhhcccccccccccccc
Q psy14566 292 RASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFD---LFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLD 368 (532)
Q Consensus 292 r~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFD---Lif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~ 368 (532)
++-|+|++||. ....+.++|++||+ +.+.+.+......+..
T Consensus 268 dvrvIa~~~~~-----------~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~------------------------- 311 (608)
T TIGR00764 268 DFILVASGNLD-----------DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENR------------------------- 311 (608)
T ss_pred ceEEEEECCHH-----------HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHH-------------------------
Confidence 88999999984 23468999999999 5554444322110000
Q ss_pred hhhhhhhhhccccccccccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhh
Q psy14566 369 ESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERK 448 (532)
Q Consensus 369 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~ky 448 (532)
+ .+..|+ .+
T Consensus 312 ------------------------------------------~---~~~~~i-------~~------------------- 320 (608)
T TIGR00764 312 ------------------------------------------D---KLVQFV-------AQ------------------- 320 (608)
T ss_pred ------------------------------------------H---HHHHHH-------HH-------------------
Confidence 0 222233 00
Q ss_pred hhhhhc-cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCch
Q psy14566 449 TVVEKV-IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNT 521 (532)
Q Consensus 449 i~yar~-~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~ 521 (532)
.+.+. ..|.++++|.+.|.++|..+ ... +..++++.|+|+.|+|.|.+.|+.+-++.|+++|+..+
T Consensus 321 -~~~r~G~l~~~s~~Av~~Li~~~~R~-ag~-----r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~A 387 (608)
T TIGR00764 321 -EVKKDGRIPHFTRDAVEEIVREAQRR-AGR-----KDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKA 387 (608)
T ss_pred -HHHHhCCCCcCCHHHHHHHHHHHHHH-Hhc-----ccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHH
Confidence 22344 57899999999999998754 222 23478999999999999999999999999997666544
No 30
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.32 E-value=2.9e-07 Score=100.38 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=65.0
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCC-CCCCCCc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPR-FGGGELH 80 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~-~g~~~~~ 80 (532)
+|+||++|+||++.+++..+..|+++||++.++|.+.|. ..++++++-++| ++||. .|.|...
T Consensus 292 ~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~------------~~~~pa~f~lIA----a~NP~pcG~~~~~ 355 (506)
T PRK09862 292 LAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA------------KITYPARFQLVA----AMNPSPTGHYQGN 355 (506)
T ss_pred hccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc------------ceeccCCEEEEE----eecCccceecCCC
Confidence 799999999999999999999999999999999999885 346889999998 68987 4444321
Q ss_pred c------------hhchHHHhhccCCHHHHHHHHhH
Q psy14566 81 T------------EEMSAELMKKHMTESEWNKIYEM 104 (532)
Q Consensus 81 ~------------~~l~~~~l~~~~~~srfDlI~~l 104 (532)
. ..++.+++ +|||+.+.+
T Consensus 356 ~c~c~~~~~~~Y~~~ls~plL------DRfdL~v~v 385 (506)
T PRK09862 356 HNRCTPEQTLRYLNRLSGPFL------DRFDLSLEI 385 (506)
T ss_pred CCCcCHHHHHHHHhhCCHhHH------hhccEEEEe
Confidence 0 23555655 899987765
No 31
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.18 E-value=2.7e-06 Score=82.12 Aligned_cols=75 Identities=35% Similarity=0.490 Sum_probs=30.0
Q ss_pred hhhcCCCceecccccccc---------------cccccccceeeecccceeecccCCC-CCCCCC-CC----Cc--c--c
Q psy14566 260 LMLADNGVCCIDEFDNLS---------------VTSSKAGVRATLNARASILAAANPI-GGQYDR-TK----SL--Q--H 314 (532)
Q Consensus 260 ~~~~~~~~~~~~e~~~~~---------------~~~~kagi~~~l~ar~svlAaanp~-~g~~~~-~~----~~--~--~ 314 (532)
+-+|++||.|+||+...+ ++++.+|...+.||+.-++||+||= -|.|.. .. |. . =
T Consensus 102 islAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y 181 (206)
T PF01078_consen 102 ISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRY 181 (206)
T ss_dssp GGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S-----------------------
T ss_pred HHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccc
Confidence 346677777777666652 5556999999999999999999994 344431 11 11 1 1
Q ss_pred cccCCCcccccccEEEEecc
Q psy14566 315 NVSLSAPIMSRFDLFFVLID 334 (532)
Q Consensus 315 ni~l~~~LLSRFDLif~l~D 334 (532)
.=.|+.|||.|||+..-+..
T Consensus 182 ~~rlsgpllDRiDi~v~~~~ 201 (206)
T PF01078_consen 182 QSRLSGPLLDRIDIHVEVPR 201 (206)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 23899999999999876543
No 32
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.18 E-value=3.7e-05 Score=83.08 Aligned_cols=224 Identities=16% Similarity=0.106 Sum_probs=130.0
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccC----CC---CCCCceeEE--Eeecc---ccchhhhc---cceeeeccccccc
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDG----NS---SSKATWRIT--TRQLE---SLIRLSEA---MAKMECLDEYEFD 231 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g----~~---ss~~glt~T--~RqlE---SliRLsEA---~Akv~~~de~~vd 231 (532)
|+++.|.||+||+.+-+. ......+.+ .. ++...+..+ ++.+. ...+.... .|.+.+.|| +.
T Consensus 41 hVLL~GpPGTGKT~LAra-La~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDE--I~ 117 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARR-LKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDE--IW 117 (498)
T ss_pred CEEEECCCChhHHHHHHH-HHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecc--cc
Confidence 389999999999988777 444322111 00 000111110 11111 11122221 355789999 99
Q ss_pred CCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCC
Q psy14566 232 KMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKS 311 (532)
Q Consensus 232 ~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~ 311 (532)
++.+..+.+|+++|+...+++ +|-...++.|.-|+|+ ||.-.
T Consensus 118 rasp~~QsaLLeam~Er~~t~------------------------------g~~~~~lp~rfiv~AT-N~LPE------- 159 (498)
T PRK13531 118 KAGPAILNTLLTAINERRFRN------------------------------GAHEEKIPMRLLVTAS-NELPE------- 159 (498)
T ss_pred cCCHHHHHHHHHHHHhCeEec------------------------------CCeEEeCCCcEEEEEC-CCCcc-------
Confidence 999999999999998877774 4677888999888887 85421
Q ss_pred ccccccCCCcccccccEEEEecccCCchhh-ccccCccchhhhhcccccccccccccchhhhhhhhhccccccccccccc
Q psy14566 312 LQHNVSLSAPIMSRFDLFFVLIDECNEILD-YGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQ 390 (532)
Q Consensus 312 ~~~ni~l~~~LLSRFDLif~l~D~~d~~~D-~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~ 390 (532)
.=.+-.+|+.|| ++-+..+.+++... ..+ +.. +...... ... .
T Consensus 160 ---~g~~leAL~DRF-liri~vp~l~~~~~e~~l--------------------L~~---~~~~~~~----~~~-~---- 203 (498)
T PRK13531 160 ---ADSSLEALYDRM-LIRLWLDKVQDKANFRSM--------------------LTS---QQDENDN----PVP-A---- 203 (498)
T ss_pred ---cCCchHHhHhhE-EEEEECCCCCchHHHHHH--------------------HHc---ccccccC----CCc-c----
Confidence 012224899999 88777777764322 111 111 0000000 000 0
Q ss_pred cccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhccccccChhHHHHHHHH
Q psy14566 391 HNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDM 470 (532)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P~ls~eA~~~I~~~ 470 (532)
...++.+ ++. .|. ..++.+ .++++..++|.+.
T Consensus 204 --------------~~vis~e---el~----------~lq-------------------~~v~~V--~v~d~v~eyI~~L 235 (498)
T PRK13531 204 --------------SLQITDE---EYQ----------QWQ-------------------KEIGKI--TLPDHVFELIFQL 235 (498)
T ss_pred --------------cCCCCHH---HHH----------HHH-------------------HHhcce--eCCHHHHHHHHHH
Confidence 0001112 111 110 222333 4577777777666
Q ss_pred HHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCch
Q psy14566 471 YTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNT 521 (532)
Q Consensus 471 Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~ 521 (532)
-..+|+... ...+++|---.++|+++|+|=+.=|+.|+++|+.-.
T Consensus 236 ~~~lr~~r~------~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll 280 (498)
T PRK13531 236 RQQLDALPN------APYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILL 280 (498)
T ss_pred HHHHhcCCC------CCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHh
Confidence 555554321 124899999999999999999999999998887633
No 33
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.01 E-value=7.3e-05 Score=83.38 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=91.9
Q ss_pred ccccCCchHHHHHHHHHHHHHhcccc-----C-CCCCC------CceeEEEeeccc---cchhhhccceeeecccccccC
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRD-----G-NSSSK------ATWRITTRQLES---LIRLSEAMAKMECLDEYEFDK 232 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~-----g-~~ss~------~glt~T~RqlES---liRLsEA~Akv~~~de~~vd~ 232 (532)
+++.|.+|++||.+++. ...|-|.. = .+.+. ..+.+|.+.-.- ---|++||--+.+.|| +..
T Consensus 28 v~i~g~~G~~ks~~~r~-l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe--~n~ 104 (584)
T PRK13406 28 VVLRARAGPVRDRWLAA-LRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAM--AER 104 (584)
T ss_pred EEEEcCCCcHHHHHHHH-HHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecC--ccc
Confidence 67889999999999998 66664420 0 00111 112222221110 1126677777889999 999
Q ss_pred CChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCc
Q psy14566 233 MDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSL 312 (532)
Q Consensus 233 ~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~ 312 (532)
++.....+|.++|+...++|. ..|+..+++++..+||+-||. .|.
T Consensus 105 ~~~~~~~aLleame~G~vtIe----------------------------R~G~s~~~Pa~F~LIat~~~~--~~~----- 149 (584)
T PRK13406 105 LEPGTAARLAAALDTGEVRLE----------------------------RDGLALRLPARFGLVALDEGA--EED----- 149 (584)
T ss_pred CCHHHHHHHHHHHhCCcEEEE----------------------------ECCcEEecCCCcEEEecCCCh--hcc-----
Confidence 999999999999999999999 899999999999999986665 122
Q ss_pred cccccCCCcccccccEEEEeccc
Q psy14566 313 QHNVSLSAPIMSRFDLFFVLIDE 335 (532)
Q Consensus 313 ~~ni~l~~~LLSRFDLif~l~D~ 335 (532)
-.||++||.||||.+-+...
T Consensus 150 ---~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 150 ---ERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ---cCCCHHhHhheEEEEEcCCC
Confidence 47999999999997655543
No 34
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.96 E-value=0.00011 Score=77.39 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=46.4
Q ss_pred hhhhcc--ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHH
Q psy14566 450 VVEKVI--ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQL 527 (532)
Q Consensus 450 ~yar~~--~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~ 527 (532)
.-||.. .-.++.++..+|.+.=..+ .-. +-|---.+.|.+.|+|=+.-+.+|+.+|+..+..+.-.
T Consensus 257 i~ar~~l~~V~l~~~~~~~ia~~~~~~---~v~---------g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 257 IAARSLLSEVELDDDAETKIAELCARL---AVD---------GHRADIVVVRAAKALAALRGRTEVEEEDIREAAELALL 324 (423)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHHh---ccC---------CCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhhh
Confidence 455553 4466777777776543222 111 14555567899999999999999998888777776655
Q ss_pred Hhh
Q psy14566 528 LRK 530 (532)
Q Consensus 528 ~~~ 530 (532)
.|.
T Consensus 325 hR~ 327 (423)
T COG1239 325 HRR 327 (423)
T ss_pred hhh
Confidence 554
No 35
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.80 E-value=2e-05 Score=89.04 Aligned_cols=176 Identities=13% Similarity=0.196 Sum_probs=102.7
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHT 81 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~ 81 (532)
.|++||++|||++.|++..+..|+++||.+.+.+.+.|+ ..++++++.++| +.||..|.
T Consensus 124 ~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~------------~~~~~~~~~lIa----t~np~eg~----- 182 (633)
T TIGR02442 124 EAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGL------------SVSHPARFVLIG----TMNPEEGD----- 182 (633)
T ss_pred ecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCc------------eeeecCCeEEEE----ecCCCCCC-----
Confidence 589999999999999999999999999999999999986 347789999988 57886442
Q ss_pred hhchHHHhhccCCHHHHHHHHhHhh--chhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHHHHH
Q psy14566 82 EEMSAELMKKHMTESEWNKIYEMSR--DRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLY 159 (532)
Q Consensus 82 ~~l~~~~l~~~~~~srfDlI~~l~~--d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I~~~ 159 (532)
+++.++ +||++.+.+.. +......++..... +..... ... ..+. .....++++|..+
T Consensus 183 --l~~~L~------dR~~l~i~v~~~~~~~~~~~il~~~~~--~~~~~~--~~~-------~~~~--~~~~~l~~~i~~a 241 (633)
T TIGR02442 183 --LRPQLL------DRFGLCVDVAAPRDPEERVEIIRRRLA--FDADPE--AFA-------ARWA--AEQEELRNRIARA 241 (633)
T ss_pred --CCHHHH------hhcceEEEccCCCchHHHHHHHHHHHh--hccCcH--HHH-------HHhh--hhHHHHHHHHHHH
Confidence 444444 66665444321 11111112211000 000000 000 0000 0012455667666
Q ss_pred HhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHH
Q psy14566 160 QNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQV 239 (532)
Q Consensus 160 ~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~ 239 (532)
+.+...+. + +..--+.|...+.++. -. ..|-...++|++.|+|.+.-.++ |+..|...+.
T Consensus 242 r~~~~~V~--i----s~~~~~~l~~~~~~~~----i~--------s~Ra~i~~~r~Ara~AaL~gr~~--V~~~Dv~~A~ 301 (633)
T TIGR02442 242 RSLLPSVR--I----SDSLIRFISELCIEFG----VD--------GHRADIVMARAARALAALDGRRR--VTAEDVREAA 301 (633)
T ss_pred HHhCCCCC--C----CHHHHHHHHHHHHHhC----CC--------CccHHHHHHHHHHHHHHHcCCCc--CCHHHHHHHH
Confidence 54332211 1 1122233444344432 10 24666779999999999999999 7777765543
No 36
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.76 E-value=0.0002 Score=72.21 Aligned_cols=80 Identities=13% Similarity=0.297 Sum_probs=52.3
Q ss_pred eeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCC
Q psy14566 222 MECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANP 301 (532)
Q Consensus 222 v~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp 301 (532)
+.+.|| ++..+...+..|+++|+.+.+++. +.. ..|-..+.+..+-|+|++||
T Consensus 108 ~lllDE--i~r~~~~~q~~Ll~~Le~~~~~i~---~~~----------------------~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 108 TLVYDE--FTRSKPETNNVLLSVFEEGVLELP---GKR----------------------GTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred EEEEcc--hhhCCHHHHHHHHHHhcCCeEEcc---CCC----------------------CCCceEecCCCCEEEEeeCC
Confidence 678899 899988888889999988777764 000 11233456667789999999
Q ss_pred CCCCCCCCCCccccccCCCcccccccEEEEecccCCc
Q psy14566 302 IGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNE 338 (532)
Q Consensus 302 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~ 338 (532)
.. |. .. -.++++|+.|| ..+-.+-|+.
T Consensus 161 ~~--~~---g~---~~l~~aL~~R~--~~i~i~~P~~ 187 (262)
T TIGR02640 161 VE--YA---GV---HETQDALLDRL--ITIFMDYPDI 187 (262)
T ss_pred cc--cc---ce---ecccHHHHhhc--EEEECCCCCH
Confidence 62 11 11 12478899997 3444444443
No 37
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.68 E-value=4.4e-05 Score=85.53 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=104.6
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHT 81 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~ 81 (532)
.|+||+.+|||++.+++..+..|+++|+++.+++.+.|+ ..++++++.|+| +.||..+.
T Consensus 82 ~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~------------~~~~p~~f~lIA----t~np~e~~----- 140 (589)
T TIGR02031 82 EAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGI------------SVVHPAKFALIA----TYDPAEGG----- 140 (589)
T ss_pred eCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCC------------ceeecCceEEEE----ecCCcccc-----
Confidence 489999999999999999999999999999999999886 236788888888 68887411
Q ss_pred hhchHHHhhccCCHHHHHHHHhHhhchhh--HHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHHHHH
Q psy14566 82 EEMSAELMKKHMTESEWNKIYEMSRDRNL--YQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLY 159 (532)
Q Consensus 82 ~~l~~~~l~~~~~~srfDlI~~l~~d~~i--~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I~~~ 159 (532)
..+++.++ .||++.+.+..-+.+ ...++..+.. +.. .. .......++++|..+
T Consensus 141 g~L~~~Ll------dRf~l~v~~~~~~~~~er~eil~~~~~---~~~--------------~~--~~~~~~~~~~~i~~a 195 (589)
T TIGR02031 141 GGLPDHLL------DRLALHVSLEDVASQDLRVEIVRRERC---NEV--------------FR--MNDELELLRGQIEAA 195 (589)
T ss_pred CCCCHHHH------HhccCeeecCCCCCHHHHHHHHHHHHH---hhh--------------hh--cchhhHHHHHHHHHH
Confidence 13555555 566654433211111 1122222110 000 00 000123467788777
Q ss_pred HhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHH
Q psy14566 160 QNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQV 239 (532)
Q Consensus 160 ~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~ 239 (532)
++....++ + +. +++.+ ..++.-.-|.. ..|-...++|.++|+|.+.-.++ |+..|...++
T Consensus 196 r~~~~~V~--i---~~----~~~~~-l~~~~~~~gv~--------s~Ra~i~~~r~ArA~Aal~gr~~--V~~~Dv~~a~ 255 (589)
T TIGR02031 196 RELLPQVT--I---SA----EQVKE-LVLTAASLGIS--------GHRADLFAVRAAKAHAALHGRTE--VTEEDLKLAV 255 (589)
T ss_pred HHhcCCcc--C---CH----HHHHH-HHHHHHHcCCC--------CccHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Confidence 65543222 1 11 12222 22222221211 24666678999999999999999 7777776554
Q ss_pred H
Q psy14566 240 A 240 (532)
Q Consensus 240 ~ 240 (532)
.
T Consensus 256 ~ 256 (589)
T TIGR02031 256 E 256 (589)
T ss_pred H
Confidence 3
No 38
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.67 E-value=0.0003 Score=73.22 Aligned_cols=176 Identities=20% Similarity=0.259 Sum_probs=114.6
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccce-eeecccceeeccc
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVR-ATLNARASILAAA 299 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~-~~l~ar~svlAaa 299 (532)
-+.+.|| ++..++..+.+|+++|+...+++. |.. ..++...-|+|+.
T Consensus 114 ~ill~DE--Inra~p~~q~aLl~~l~e~~vtv~------------------------------~~~~~~~~~~f~viaT~ 161 (329)
T COG0714 114 VILLLDE--INRAPPEVQNALLEALEERQVTVP------------------------------GLTTIRLPPPFIVIATQ 161 (329)
T ss_pred eEEEEec--cccCCHHHHHHHHHHHhCcEEEEC------------------------------CcCCcCCCCCCEEEEcc
Confidence 3688999 999999999999999999888875 444 7788999999999
Q ss_pred CCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcc
Q psy14566 300 NPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALN 379 (532)
Q Consensus 300 np~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~ 379 (532)
||.. |.. .-.+|.+++.|| ++.+-.|-|+.+....+. + . +.....
T Consensus 162 Np~e--~~g------~~~l~eA~ldRf-~~~~~v~yp~~~~e~~~i-------------------~-~---~~~~~~--- 206 (329)
T COG0714 162 NPGE--YEG------TYPLPEALLDRF-LLRIYVDYPDSEEEERII-------------------L-A---RVGGVD--- 206 (329)
T ss_pred Cccc--cCC------CcCCCHHHHhhE-EEEEecCCCCchHHHHHH-------------------H-H---hCcccc---
Confidence 9853 222 235899999999 567777777554433322 0 0 000000
Q ss_pred ccccccccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhcc-ccc
Q psy14566 380 VSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVI-ERL 458 (532)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~-~P~ 458 (532)
...... .++ .+-.+. +. +.+.+.+ ...
T Consensus 207 --~~~~~~---------------------~v~---~~~~~~----~~----------------------~~~~~~~~~~~ 234 (329)
T COG0714 207 --ELDLES---------------------LVK---PVLSDE----EL----------------------LRLQKEVKKVP 234 (329)
T ss_pred --ccccch---------------------hhh---hhhCHH----HH----------------------HHHHhhhccCC
Confidence 000000 000 000000 00 0111222 566
Q ss_pred cChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCc
Q psy14566 459 IYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETN 520 (532)
Q Consensus 459 ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~ 520 (532)
++++..+.+...+...|.... -...+++|....++..+.|+|.+.-+..|.++|+..
T Consensus 235 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~ 291 (329)
T COG0714 235 VSDEVIDYIVTLVAALREAPD-----VALGASPRASLALLAALRALALLDGRDAVIPDDVKA 291 (329)
T ss_pred chHHHHHHHHHHHHhhccccc-----hhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHH
Confidence 778888888877777776543 124678999999999999999999999999877543
No 39
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.62 E-value=6.5e-05 Score=67.24 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=66.2
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc-----cCCC-CCCCceeE-EEeeccccchh---hhccceeeecccccccCCChH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR-----DGNS-SSKATWRI-TTRQLESLIRL---SEAMAKMECLDEYEFDKMDPH 236 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r-----~g~~-ss~~glt~-T~RqlESliRL---sEA~Akv~~~de~~vd~~d~~ 236 (532)
|.+|.|.||.+|+.+.+. ..+.-.. .... ..-..++- .+-+.++..+- --..+.+.+.|| ++...+.
T Consensus 1 HvLleg~PG~GKT~la~~-lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DE--iNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKA-LARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADE--INRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHH-HHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEET--GGGS-HH
T ss_pred CEeeECCCccHHHHHHHH-HHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecc--cccCCHH
Confidence 488999999999998777 3332211 0000 00001111 11111111111 112345689999 9999999
Q ss_pred HHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccc
Q psy14566 237 DQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNV 316 (532)
Q Consensus 237 ~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni 316 (532)
.+.+++|+|+...+++. |....|+..-.|+|+.||.... --.
T Consensus 78 tQsAlLeam~Er~Vt~~------------------------------g~~~~lp~pf~ViATqNp~e~~--------Gty 119 (131)
T PF07726_consen 78 TQSALLEAMEERQVTID------------------------------GQTYPLPDPFFVIATQNPVEQE--------GTY 119 (131)
T ss_dssp HHHHHHHHHHHSEEEET------------------------------TEEEE--SS-EEEEEE-TT--S-----------
T ss_pred HHHHHHHHHHcCeEEeC------------------------------CEEEECCCcEEEEEecCccccC--------cee
Confidence 99999999999999976 8899999999999999997321 125
Q ss_pred cCCCcccccc
Q psy14566 317 SLSAPIMSRF 326 (532)
Q Consensus 317 ~l~~~LLSRF 326 (532)
.||.+++.||
T Consensus 120 ~Lpea~~DRF 129 (131)
T PF07726_consen 120 PLPEAQLDRF 129 (131)
T ss_dssp ---HHHHTTS
T ss_pred cCCHHHhccc
Confidence 7999999999
No 40
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.39 E-value=0.00011 Score=66.25 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=67.2
Q ss_pred ccccCCchHHHHHHHHHHHHHhccc-----cCCC-CCCCceeEEEee--cc---ccchhhhc--cceeeecccccccCCC
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQR-----DGNS-SSKATWRITTRQ--LE---SLIRLSEA--MAKMECLDEYEFDKMD 234 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r-----~g~~-ss~~glt~T~Rq--lE---SliRLsEA--~Akv~~~de~~vd~~d 234 (532)
++|+|.||+||+.+.+. +.++... .... ++...+.-.... .. .--.+.+| ...+.+.|| +++.+
T Consensus 2 vlL~G~~G~GKt~l~~~-la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDE--in~a~ 78 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARE-LAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDE--INRAP 78 (139)
T ss_dssp EEEEESSSSSHHHHHHH-HHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESS--CGG--
T ss_pred EEEECCCCCCHHHHHHH-HHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECC--cccCC
Confidence 68899999999999998 5555443 1111 111111111110 00 01112222 455678899 88888
Q ss_pred hHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceee------ecccceeecccCCCCCCCCC
Q psy14566 235 PHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRAT------LNARASILAAANPIGGQYDR 308 (532)
Q Consensus 235 ~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~------l~ar~svlAaanp~~g~~~~ 308 (532)
..-...|+.+++...+.+. ..+-... ++...-|+|++||..
T Consensus 79 ~~v~~~L~~ll~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ii~t~N~~~----- 125 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLP----------------------------EGGEEIKEPNNDLASPNFRIIATMNPRD----- 125 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-----------------------------TSSSEEE--TT------EEEEEEESSST-----
T ss_pred HHHHHHHHHHHhhCccccc----------------------------CCCcEEecCcccccccceEEEEEEcCCC-----
Confidence 7777788888888776654 2222222 233589999999986
Q ss_pred CCCccccccCCCcccccc
Q psy14566 309 TKSLQHNVSLSAPIMSRF 326 (532)
Q Consensus 309 ~~~~~~ni~l~~~LLSRF 326 (532)
...-.|+++|+|||
T Consensus 126 ----~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 126 ----KGRKELSPALLDRF 139 (139)
T ss_dssp ------TTTTCHHHHTT-
T ss_pred ----CCcCcCCHHHHhhC
Confidence 12236899999998
No 41
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.15 E-value=0.0057 Score=63.41 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=76.1
Q ss_pred ccccCCchHHHHHHHHHHHHHhccc------cCCCCC--CCceeE-EEeecc-------c-cchhhhccceeeecccccc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQR------DGNSSS--KATWRI-TTRQLE-------S-LIRLSEAMAKMECLDEYEF 230 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r------~g~~ss--~~glt~-T~RqlE-------S-liRLsEA~Akv~~~de~~v 230 (532)
++|.|.||+||+.+.+.....|.-. +..-+. --|-.+ .+++-. + +.|-.+.+ .+.+.|| +
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g-~illlDE--i 143 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHN-VALCFDE--Y 143 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCC-eEEEech--h
Confidence 7899999999999988854444322 100000 001111 111111 1 11111222 2367788 8
Q ss_pred cCCChHHHHHHHHHHHh-cccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCC-----C
Q psy14566 231 DKMDPHDQVAIHEAMEQ-QTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIG-----G 304 (532)
Q Consensus 231 d~~d~~~~~~l~eaMeq-q~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~-----g 304 (532)
+..+++....|+..+|. ..+.|. ..|-..+-....-|+|++||.+ |
T Consensus 144 n~a~p~~~~~L~~lLE~~~~l~i~----------------------------~~~~~i~~hp~FrviAT~Np~g~Gd~~G 195 (327)
T TIGR01650 144 DAGRPDVMFVIQRVLEAGGKLTLL----------------------------DQNRVIRAHPAFRLFATANTIGLGDTTG 195 (327)
T ss_pred hccCHHHHHHHHHHhccCCeEEEC----------------------------CCceEecCCCCeEEEEeeCCCCcCCCCc
Confidence 88888888888888774 344443 2233333344677999999986 3
Q ss_pred CCCCCCCccccccCCCcccccccEEEEecccCCchh
Q psy14566 305 QYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEIL 340 (532)
Q Consensus 305 ~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~ 340 (532)
.|.- -..+|.+++.|| ++.+-.|-++.+.
T Consensus 196 ~y~G------t~~l~~A~lDRF-~i~~~~~Yp~~e~ 224 (327)
T TIGR01650 196 LYHG------TQQINQAQMDRW-SIVTTLNYLEHDN 224 (327)
T ss_pred ceee------eecCCHHHHhhe-eeEeeCCCCCHHH
Confidence 3433 235789999999 4434455555443
No 42
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.08 E-value=0.00053 Score=71.64 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=49.1
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCC
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGG 76 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~ 76 (532)
|++|+++|||++.|++..+..|.++|+.+.+.+.+.|. ...+++|..++| +.||..|.
T Consensus 130 A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~------------~~~~~~r~ivia----t~np~eg~ 187 (337)
T TIGR02030 130 ANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGI------------SIRHPARFVLVG----SGNPEEGE 187 (337)
T ss_pred ccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCE------------EEEcCCCEEEEe----ccccccCC
Confidence 78999999999999999999999999999888888875 236788988887 57887443
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=96.82 E-value=0.0064 Score=62.27 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.6
Q ss_pred ccccccCCchHHHHHHHHHHHHHhc
Q psy14566 166 LFPSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 166 ~~pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.|.++.|.||+||+.+.+. +.+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~-la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK-MADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHH
Confidence 3478999999999998888 54443
No 44
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.66 E-value=0.00098 Score=64.57 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=46.7
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCC
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGE 78 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~ 78 (532)
||++||..+|||--.+++-..+|.++||.+.|.|.++|. ..+.+|+.-++| +.||.--+|.
T Consensus 104 lAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~------------~~~~Pa~f~lv~----a~NPcpCG~~ 164 (206)
T PF01078_consen 104 LAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGG------------SVTYPARFLLVA----AMNPCPCGYY 164 (206)
T ss_dssp GGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTE------------EEEEB--EEEEE----EE-S------
T ss_pred HhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCc------------eEEEecccEEEE----Eecccccccc
Confidence 799999999999999999999999999999999999996 347899988888 6898755543
No 45
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00085 Score=71.86 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=63.2
Q ss_pred HHHHhcccccccCcchhhhhcCCCceeccccccc---------------ccccccccceeeecccceeecccCCC-CCCC
Q psy14566 243 EAMEQQTISIAKRPELALMLADNGVCCIDEFDNL---------------SVTSSKAGVRATLNARASILAAANPI-GGQY 306 (532)
Q Consensus 243 eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~---------------~~~~~kagi~~~l~ar~svlAaanp~-~g~~ 306 (532)
.+|.... ++.+-+| ..||+|||.|+||+... .+.+|.+|-..+.+|+-..+||+||- -|.|
T Consensus 265 ~aLvGGG-~~p~PGe--IsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~ 341 (490)
T COG0606 265 AALVGGG-GVPRPGE--ISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNL 341 (490)
T ss_pred HHHhCCC-CCCCCCc--eeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCC
Confidence 3444444 4433323 56999999999999885 37788999999999999999999993 3444
Q ss_pred CCCC----Ccccc-----ccCCCcccccccEEEEecc
Q psy14566 307 DRTK----SLQHN-----VSLSAPIMSRFDLFFVLID 334 (532)
Q Consensus 307 ~~~~----~~~~n-----i~l~~~LLSRFDLif~l~D 334 (532)
.... .-... =+|+.|||.||||..-+-+
T Consensus 342 ~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~ 378 (490)
T COG0606 342 GAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPR 378 (490)
T ss_pred CCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccC
Confidence 3332 11122 3899999999999864443
No 46
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.33 E-value=0.0023 Score=67.06 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=50.3
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCC
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGG 76 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~ 76 (532)
-|++|+.+|||++.+++..+..|.++|+.+++++.+.|.. ..+++|..++| ..||..|.
T Consensus 142 ~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s------------~~~p~rfivia----T~np~eg~ 200 (350)
T CHL00081 142 KANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGIS------------IRHPARFVLVG----SGNPEEGE 200 (350)
T ss_pred ecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCee------------eecCCCEEEEe----ccCcccCC
Confidence 3789999999999999999999999999999999888852 36788988887 68887443
No 47
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.15 E-value=0.004 Score=70.14 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=34.3
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcccccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKG 38 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKa 38 (532)
.|+||+.+|||++.|++..+..|+++|+++++++...
T Consensus 215 ~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~ 251 (608)
T TIGR00764 215 RAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQ 251 (608)
T ss_pred ECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCc
Confidence 5899999999999999999999999999999988654
No 48
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.12 E-value=0.02 Score=64.65 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=48.9
Q ss_pred cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCch
Q psy14566 455 IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNT 521 (532)
Q Consensus 455 ~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~ 521 (532)
-.|.++++|...|.++|..+ ... +..+....|+|..|+|.+-..||..-++.|+.+|+..+
T Consensus 336 ~l~~f~~eAVa~LI~~~~R~--ag~----r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a 396 (637)
T PRK13765 336 KIPHFDRDAVEEIIREAKRR--AGR----KGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEA 396 (637)
T ss_pred CCCCCCHHHHHHHHHHHHHH--hCC----ccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHH
Confidence 46789999999999999753 221 22355678999999999999999999999998776543
No 49
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.08 E-value=0.0072 Score=70.04 Aligned_cols=118 Identities=19% Similarity=0.328 Sum_probs=63.8
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccC-----CC-CCCCceeEEEeec----cc-c-chhhhccc--eeeecccccccCC
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDG-----NS-SSKATWRITTRQL----ES-L-IRLSEAMA--KMECLDEYEFDKM 233 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g-----~~-ss~~glt~T~Rql----ES-l-iRLsEA~A--kv~~~de~~vd~~ 233 (532)
.+++|.||+||+.+.+. ..+.-.+.. .+ .....+....|.. .. + ..+.++++ -+.+.|| +|++
T Consensus 352 i~l~GppG~GKTtl~~~-ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDE--idk~ 428 (784)
T PRK10787 352 LCLVGPPGVGKTSLGQS-IAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDE--IDKM 428 (784)
T ss_pred EEEECCCCCCHHHHHHH-HHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEC--hhhc
Confidence 68899999999999888 555433310 00 0000011111111 00 0 11223332 2467788 8887
Q ss_pred ChHH----HHHHHHHHH-hcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCC
Q psy14566 234 DPHD----QVAIHEAME-QQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDR 308 (532)
Q Consensus 234 d~~~----~~~l~eaMe-qq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~ 308 (532)
.... ..+|+++|+ .|+.... |.+-.+.+.. .++.+||+||+.
T Consensus 429 ~~~~~g~~~~aLlevld~~~~~~~~-----------------d~~~~~~~dl----------s~v~~i~TaN~~------ 475 (784)
T PRK10787 429 SSDMRGDPASALLEVLDPEQNVAFS-----------------DHYLEVDYDL----------SDVMFVATSNSM------ 475 (784)
T ss_pred ccccCCCHHHHHHHHhccccEEEEe-----------------cccccccccC----------CceEEEEcCCCC------
Confidence 7653 367778876 3444433 2222222221 467788888752
Q ss_pred CCCccccccCCCcccccccEE
Q psy14566 309 TKSLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 309 ~~~~~~ni~l~~~LLSRFDLi 329 (532)
.||+|||+||++|
T Consensus 476 --------~i~~aLl~R~~ii 488 (784)
T PRK10787 476 --------NIPAPLLDRMEVI 488 (784)
T ss_pred --------CCCHHHhcceeee
Confidence 4999999999753
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.89 E-value=0.023 Score=58.00 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=37.6
Q ss_pred hhccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCccc
Q psy14566 452 EKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDE 512 (532)
Q Consensus 452 ar~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~ 512 (532)
.+...+.+++++.+.+.+|....|.. .+|=-+|+|..++.-+..+.-.|+...
T Consensus 208 l~~~~~~l~~~a~~~L~~~l~~~~~~--------~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 208 LKEQQYRFSAEAEEAFADYIALRRTQ--------PHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHhccccCHHHHHHHHHHHHHhCCC--------CCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445678899999988865544332 245669999999988888777777543
No 51
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.87 E-value=0.0058 Score=63.85 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=49.4
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCC
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRF 74 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~ 74 (532)
.|++|+++|||++.+++..+..|.++|+.+.+++...|. ...+++|..++| +.||..
T Consensus 126 ~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~------------~~~~p~rfiviA----t~NP~e 182 (334)
T PRK13407 126 RANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGL------------SIRHPARFVLVG----SGNPEE 182 (334)
T ss_pred EcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCe------------EEecCCCEEEEe----cCCccc
Confidence 488999999999999999999999999999999888885 236788888887 688863
No 52
>PHA02244 ATPase-like protein
Probab=95.61 E-value=0.022 Score=60.08 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=32.6
Q ss_pred cceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCC
Q psy14566 284 GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECN 337 (532)
Q Consensus 284 gi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d 337 (532)
|-......++.+||++||.+.-|+..- .-.-.+++++++||-. +-.|-+.
T Consensus 213 g~~i~~h~~FRlIATsN~~~~G~~~~y--~G~k~L~~AllDRFv~--I~~dyp~ 262 (383)
T PHA02244 213 DERVTAHEDFRVISAGNTLGKGADHIY--VARNKIDGATLDRFAP--IEFDYDE 262 (383)
T ss_pred CcEEecCCCEEEEEeeCCCccCccccc--CCCcccCHHHHhhcEE--eeCCCCc
Confidence 334455678999999999764454211 1234789999999943 3445544
No 53
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.51 E-value=0.2 Score=55.83 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=34.0
Q ss_pred hccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHh
Q psy14566 453 KVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLR 529 (532)
Q Consensus 453 r~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~ 529 (532)
+.....+++++.+.|..|. . ..|+|..+++++-..|..+=+..|| ..|+++.+.
T Consensus 277 ~k~~i~is~~al~~I~~y~-~----------------n~Rel~nll~~Aa~~A~~~~~~~It------~~dI~~vl~ 330 (531)
T TIGR02902 277 EKIGINLEKHALELIVKYA-S----------------NGREAVNIVQLAAGIALGEGRKRIL------AEDIEWVAE 330 (531)
T ss_pred HHcCCCcCHHHHHHHHHhh-h----------------hHHHHHHHHHHHHHHHhhCCCcEEc------HHHHHHHhC
Confidence 3344678888888776542 1 1488888888877666555445566 455655554
No 54
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.02 E-value=0.022 Score=49.98 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=36.6
Q ss_pred cCCCceeccccccccccccc---cccee-----eecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEe
Q psy14566 263 ADNGVCCIDEFDNLSVTSSK---AGVRA-----TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVL 332 (532)
Q Consensus 263 ~~~~~~~~~e~~~~~~~~~k---agi~~-----~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l 332 (532)
...+++++||++.+.....+ .-+.. ..+.++.|++++||... ..+++.+.+|||..+.+
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~-----------~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL-----------GDLDRALYDRLDIRIVI 149 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc-----------CCcChhHHhhhccEeec
Confidence 34567777777765211100 00000 23678999999999743 56778899999876644
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.95 E-value=0.056 Score=53.17 Aligned_cols=114 Identities=21% Similarity=0.329 Sum_probs=64.5
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIH 242 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~ 242 (532)
|.++.|.||+||..+-.-...++-.. +|.... -..++-++..-.+-+ .+.++|| +-.++...+..|+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~------k~~dl~~il~~l~~~-~ILFIDE--IHRlnk~~qe~Ll 122 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE------KAGDLAAILTNLKEG-DILFIDE--IHRLNKAQQEILL 122 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------SCHHHHHHHHT--TT--EEEECT--CCC--HHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhh------hHHHHHHHHHhcCCC-cEEEEec--hhhccHHHHHHHH
Confidence 58999999999987655422233211 110000 012222222222222 3688999 9999999999999
Q ss_pred HHHHhcccccccCcchhhhhcCCCceeccccccccccccccc-----ceeeecccceeecccCCCCCCCCCCCCcccccc
Q psy14566 243 EAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAG-----VRATLNARASILAAANPIGGQYDRTKSLQHNVS 317 (532)
Q Consensus 243 eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kag-----i~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~ 317 (532)
.+||..++.|. - .+| +...| .+-++++|++=.+ -
T Consensus 123 pamEd~~idii---------i------------------G~g~~ar~~~~~l-~~FTligATTr~g-------------~ 161 (233)
T PF05496_consen 123 PAMEDGKIDII---------I------------------GKGPNARSIRINL-PPFTLIGATTRAG-------------L 161 (233)
T ss_dssp HHHHCSEEEEE---------B------------------SSSSS-BEEEEE-----EEEEEESSGC-------------C
T ss_pred HHhccCeEEEE---------e------------------ccccccceeeccC-CCceEeeeecccc-------------c
Confidence 99999998653 0 233 33333 4567777765432 6
Q ss_pred CCCcccccccEEE
Q psy14566 318 LSAPIMSRFDLFF 330 (532)
Q Consensus 318 l~~~LLSRFDLif 330 (532)
|++||.+||-+++
T Consensus 162 ls~pLrdRFgi~~ 174 (233)
T PF05496_consen 162 LSSPLRDRFGIVL 174 (233)
T ss_dssp TSHCCCTTSSEEE
T ss_pred cchhHHhhcceec
Confidence 8999999997774
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.91 E-value=0.19 Score=50.58 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=33.0
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCc
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECL 510 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~ 510 (532)
.-.++++|.+.|.+++..++..... .+-..|.+.-++-.+..+.-.++-
T Consensus 195 ~~~l~~~a~~~l~~~~~~~~~~~~~------~~gn~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 195 EYKLTEEAKWKLREHLYKVDQLSSR------EFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred CCccCHHHHHHHHHHHHHHHhccCC------CCchHHHHHHHHHHHHHHHHHHHh
Confidence 3458899999998888777652221 234578888887777777655543
No 57
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=94.21 E-value=0.019 Score=64.38 Aligned_cols=76 Identities=16% Similarity=0.294 Sum_probs=60.5
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHT 81 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~ 81 (532)
+|++||..+||+.-++++...+|.++||.+.|+|...|+ ..+++++-.++| .-||. +|.
T Consensus 91 ~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~------------s~~~Pa~F~LIa----t~~~~--~~~--- 149 (584)
T PRK13406 91 EADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGL------------ALRLPARFGLVA----LDEGA--EED--- 149 (584)
T ss_pred eccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCc------------EEecCCCcEEEe----cCCCh--hcc---
Confidence 689999999999999999999999999999999999997 347899998888 34554 121
Q ss_pred hhchHHHhhccCCHHHHHHHHhH
Q psy14566 82 EEMSAELMKKHMTESEWNKIYEM 104 (532)
Q Consensus 82 ~~l~~~~l~~~~~~srfDlI~~l 104 (532)
..+++.++ +||++...+
T Consensus 150 ~~L~~~lL------DRf~l~v~v 166 (584)
T PRK13406 150 ERAPAALA------DRLAFHLDL 166 (584)
T ss_pred cCCCHHhH------hheEEEEEc
Confidence 34666665 677766554
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.48 E-value=0.028 Score=49.28 Aligned_cols=55 Identities=27% Similarity=0.339 Sum_probs=35.8
Q ss_pred CCceecccccccccccc--------------cccceeee--cccceeecccCCCCCCCCCCCCccccccCCCccc-cccc
Q psy14566 265 NGVCCIDEFDNLSVTSS--------------KAGVRATL--NARASILAAANPIGGQYDRTKSLQHNVSLSAPIM-SRFD 327 (532)
Q Consensus 265 ~~~~~~~e~~~~~~~~~--------------kagi~~~l--~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LL-SRFD 327 (532)
..|.+|||+|.+..... ..-+.... +.++.|+++||-.. .++++|+ +|||
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-------------~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-------------KIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-------------GSCHHHHSTTSE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChh-------------hCCHhHHhCCCc
Confidence 45788999998843320 00011111 34689999998742 6889999 9999
Q ss_pred EEEEe
Q psy14566 328 LFFVL 332 (532)
Q Consensus 328 Lif~l 332 (532)
-.|-+
T Consensus 126 ~~i~~ 130 (132)
T PF00004_consen 126 RRIEF 130 (132)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88754
No 59
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.29 E-value=0.098 Score=54.62 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=25.8
Q ss_pred cccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhh
Q psy14566 457 RLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMA 505 (532)
Q Consensus 457 P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~A 505 (532)
|.+|++|.+.|..| .+|=.+|+|+.+|+-+-+.+
T Consensus 200 ~~ls~~a~~~L~~y---------------~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 200 PGFTPQAREQLLEY---------------HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCcCHHHHHHHHhC---------------CCCchHHHHHHHHHHHHHhC
Confidence 68999999998755 15677999998886555544
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.61 E-value=0.31 Score=50.68 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=67.1
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEee-ccccchhhh--ccceeeecccccccCCChHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQ-LESLIRLSE--AMAKMECLDEYEFDKMDPHDQVAIHEA 244 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~Rq-lESliRLsE--A~Akv~~~de~~vd~~d~~~~~~l~ea 244 (532)
.++.|.||+||+.+.+.+..++... . ........+ .+.+..+.. ....+.++|| ++.+.......+..+
T Consensus 54 ~ll~GppG~GKT~la~~ia~~l~~~----~--~~~~~~~~~~~~~l~~~l~~l~~~~vl~IDE--i~~l~~~~~e~l~~~ 125 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANEMGVN----I--RITSGPALEKPGDLAAILTNLEEGDVLFIDE--IHRLSPVVEEILYPA 125 (328)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCC----e--EEEecccccChHHHHHHHHhcccCCEEEEec--HhhcchHHHHHHHHH
Confidence 7889999999999999854444211 0 000000000 011112211 1234677888 887776555566777
Q ss_pred HHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccc
Q psy14566 245 MEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS 324 (532)
Q Consensus 245 Meqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS 324 (532)
|+...+.+. + ++|.. ..-+...++. .++++|+|+.+ .++++|.|
T Consensus 126 ~e~~~~~~~--------l-~~~~~-------------~~~~~~~l~~-~~li~at~~~~-------------~l~~~L~s 169 (328)
T PRK00080 126 MEDFRLDIM--------I-GKGPA-------------ARSIRLDLPP-FTLIGATTRAG-------------LLTSPLRD 169 (328)
T ss_pred HHhcceeee--------e-ccCcc-------------ccceeecCCC-ceEEeecCCcc-------------cCCHHHHH
Confidence 886554432 0 00100 1112223443 67777787652 46788999
Q ss_pred cccEEEEecccCCc
Q psy14566 325 RFDLFFVLIDECNE 338 (532)
Q Consensus 325 RFDLif~l~D~~d~ 338 (532)
||++++-+. .++.
T Consensus 170 Rf~~~~~l~-~~~~ 182 (328)
T PRK00080 170 RFGIVQRLE-FYTV 182 (328)
T ss_pred hcCeeeecC-CCCH
Confidence 998765443 4443
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.60 E-value=0.12 Score=52.86 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=42.4
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEE-eeccccchhhhc--cceeeecccccccCCChHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITT-RQLESLIRLSEA--MAKMECLDEYEFDKMDPHDQVAIHEA 244 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~-RqlESliRLsEA--~Akv~~~de~~vd~~d~~~~~~l~ea 244 (532)
.++.|.||+||+.+.+.+..++... . .....+. ...+.+.....+ ...+.++|| ++.++......++.+
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~----~--~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDE--i~~l~~~~~e~l~~~ 104 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVN----L--KITSGPALEKPGDLAAILTNLEEGDVLFIDE--IHRLSPAVEELLYPA 104 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC----E--EEeccchhcCchhHHHHHHhcccCCEEEEeh--HhhhCHHHHHHhhHH
Confidence 7899999999999998854444321 0 0000000 001111111111 234678888 888887766677788
Q ss_pred HHhcccc
Q psy14566 245 MEQQTIS 251 (532)
Q Consensus 245 Meqq~is 251 (532)
|+.....
T Consensus 105 ~~~~~~~ 111 (305)
T TIGR00635 105 MEDFRLD 111 (305)
T ss_pred Hhhhhee
Confidence 8765443
No 62
>PHA02244 ATPase-like protein
Probab=92.57 E-value=0.12 Score=54.68 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=47.1
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCC--
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGEL-- 79 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~-- 79 (532)
++.||+|+|||++.++|.....|+.+++++.+.+. ++. -...-+..++| ++||...+|+.
T Consensus 178 ~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~-g~~-------------i~~h~~FRlIA----TsN~~~~G~~~~y 239 (383)
T PHA02244 178 FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFA-DER-------------VTAHEDFRVIS----AGNTLGKGADHIY 239 (383)
T ss_pred hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEec-CcE-------------EecCCCEEEEE----eeCCCccCccccc
Confidence 36799999999999999999999999998866543 221 12234556666 57886544421
Q ss_pred -cchhchHHHh
Q psy14566 80 -HTEEMSAELM 89 (532)
Q Consensus 80 -~~~~l~~~~l 89 (532)
....++++++
T Consensus 240 ~G~k~L~~All 250 (383)
T PHA02244 240 VARNKIDGATL 250 (383)
T ss_pred CCCcccCHHHH
Confidence 2234555555
No 63
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.05 E-value=0.1 Score=60.68 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.0
Q ss_pred cccccCCchHHHHHHHHHHHHHh
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~L 189 (532)
..+|+|.||+||+.+.+.....+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999888744444
No 64
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.02 E-value=0.064 Score=48.09 Aligned_cols=36 Identities=19% Similarity=0.482 Sum_probs=29.5
Q ss_pred CCceeeeecccCCCcccchhHHHHHhhhhccccccC
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGD 39 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKag 39 (532)
.+++|+||||+++++.-...|+.+++...+.+...+
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~ 100 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGG 100 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSS
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCC
Confidence 579999999999999999999999999988866554
No 65
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.72 E-value=0.32 Score=50.67 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=26.4
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhh
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMA 505 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~A 505 (532)
.|.+|++|.+.|..| .+|=-+|||+.+++-+-..+
T Consensus 206 ~~~~s~~al~~L~~y---------------~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 206 FPGFTERARETLLNY---------------RWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCCCHHHHHHHHhC---------------CCCcHHHHHHHHHHHHHHhc
Confidence 478999999988755 15667899998887766544
No 66
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=91.34 E-value=0.21 Score=53.22 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=50.4
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCC
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGG 76 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~ 76 (532)
|++||.-|||+--+++.-+.+|+.+|+.+.-.|-..||. -.+++|..++| .+||--|.
T Consensus 143 AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGis------------i~hpa~fvlig----TmNPEeGe 200 (423)
T COG1239 143 ANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGIS------------IRHPARFLLIG----TMNPEEGE 200 (423)
T ss_pred ccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCcee------------eccCccEEEEe----ecCccccc
Confidence 899999999999999999999999999987777778873 37899999998 69997554
No 67
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.22 E-value=0.13 Score=51.82 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=32.2
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhcccccc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKG 38 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKa 38 (532)
+.||+++|||++++++..+..|+++||.+.+++...
T Consensus 104 ~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~ 139 (262)
T TIGR02640 104 REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGK 139 (262)
T ss_pred HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCC
Confidence 467999999999999999999999999998887543
No 68
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=90.39 E-value=0.15 Score=55.10 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=48.6
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCC
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGE 78 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~ 78 (532)
.||++||..+||+-.-...--.+|-+.||.+.|.|+.++-. .+.+|+--++| ++||.--+++
T Consensus 280 sLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~------------v~ypa~Fqlv~----AmNpcpcG~~ 341 (490)
T COG0606 280 SLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSK------------VTYPARFQLVA----AMNPCPCGNL 341 (490)
T ss_pred eeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCe------------eEEeeeeEEhh----hcCCCCccCC
Confidence 38999999999999888877778889999999999999842 25566655555 7898754443
No 69
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.38 E-value=0.47 Score=40.85 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=36.2
Q ss_pred Cceeccccccccccccccc----------ceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEe
Q psy14566 266 GVCCIDEFDNLSVTSSKAG----------VRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVL 332 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~kag----------i~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l 332 (532)
++.++||.+.+........ ........+.+++++|+ .....+..+..|||..+.+
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND------------EKDLGPALLRRRFDRRIVL 144 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC------------CccCchhhhhhccceEEEe
Confidence 6779999999854433221 23345678999999998 2334555666677776654
No 70
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=90.21 E-value=0.22 Score=44.77 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=37.9
Q ss_pred CceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCC
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPR 73 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~ 73 (532)
.+|..+||+....|..++++.|+|+-..|++..-- -.|+..-.|+| +.||.
T Consensus 63 ~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~--------------~~lp~pf~ViA----TqNp~ 113 (131)
T PF07726_consen 63 TNILLADEINRAPPKTQSALLEAMEERQVTIDGQT--------------YPLPDPFFVIA----TQNPV 113 (131)
T ss_dssp SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEE--------------EE--SS-EEEE----EE-TT
T ss_pred hceeeecccccCCHHHHHHHHHHHHcCeEEeCCEE--------------EECCCcEEEEE----ecCcc
Confidence 37899999999999999999999999999864322 26777788888 58985
No 71
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.25 E-value=0.4 Score=56.49 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=38.5
Q ss_pred ceeccccccccccc-ccccc-------eeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCc
Q psy14566 267 VCCIDEFDNLSVTS-SKAGV-------RATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNE 338 (532)
Q Consensus 267 ~~~~~e~~~~~~~~-~kagi-------~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~ 338 (532)
|.||||++.+.-.. +.+++ ..--+-...+|||++|..- ..-+++.++|.+||+.|+ ..+|+.
T Consensus 274 ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~--------r~~~~~d~al~rRf~~i~--v~eP~~ 343 (857)
T PRK10865 274 ILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY--------RQYIEKDAALERRFQKVF--VAEPSV 343 (857)
T ss_pred EEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH--------HHHhhhcHHHHhhCCEEE--eCCCCH
Confidence 78999999884221 11110 0111346788999988521 223678899999999765 456654
No 72
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=89.21 E-value=0.64 Score=51.75 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=27.8
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhh
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAK 506 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AK 506 (532)
.|.+|++|.+.|..|. +|=.+|+|+.+|+-+-..++
T Consensus 394 ~~~~s~~a~~~L~~~~---------------WPGNvrEL~~v~~~a~~~~~ 429 (534)
T TIGR01817 394 PLTITPSAIRVLMSCK---------------WPGNVRELENCLERTATLSR 429 (534)
T ss_pred CCCCCHHHHHHHHhCC---------------CCChHHHHHHHHHHHHHhCC
Confidence 3789999999987552 56679999999887766554
No 73
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.85 E-value=0.15 Score=48.22 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.2
Q ss_pred CCceeeeecccCCCc-----------ccchhHHHHHhhhhcccccc
Q psy14566 4 DNGVCCIDEFDKMDP-----------HDQVAIHEAMEQQTISIAKG 38 (532)
Q Consensus 4 d~GvccIDEfDkm~~-----------~dr~~iheaMeqqtisiaKa 38 (532)
++||.++|||||+.+ +-+..+..+||.++++-.++
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g 113 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYG 113 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTC
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccc
Confidence 468999999999999 99999999999999985443
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.82 E-value=0.53 Score=55.39 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=40.9
Q ss_pred CCceecccccccccccc-ccccee--ee-----cccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccC
Q psy14566 265 NGVCCIDEFDNLSVTSS-KAGVRA--TL-----NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDEC 336 (532)
Q Consensus 265 ~~~~~~~e~~~~~~~~~-kagi~~--~l-----~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~ 336 (532)
+.|+||||+..+.-..+ +++... .| +-...+|+|++|.. |++ -+.+.++|.+||..| ...+|
T Consensus 281 ~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e--~~~------~~~~d~AL~rRf~~i--~v~ep 350 (852)
T TIGR03345 281 PIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAE--YKK------YFEKDPALTRRFQVV--KVEEP 350 (852)
T ss_pred CeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHH--Hhh------hhhccHHHHHhCeEE--EeCCC
Confidence 45889999999843221 111110 11 23577899998842 222 256789999999854 56666
Q ss_pred Cchhh
Q psy14566 337 NEILD 341 (532)
Q Consensus 337 d~~~D 341 (532)
+.+.=
T Consensus 351 s~~~~ 355 (852)
T TIGR03345 351 DEETA 355 (852)
T ss_pred CHHHH
Confidence 65543
No 75
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.60 E-value=0.6 Score=54.10 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=51.5
Q ss_pred ceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeeccc
Q psy14566 220 AKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAA 299 (532)
Q Consensus 220 Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaa 299 (532)
-.+.+.|| ++++++.....|+.+|+.+.++-. .|-...+ .+|.|+.++
T Consensus 554 ~~VvllDE--ieka~~~~~~~Ll~~ld~g~~~d~-----------------------------~g~~vd~-~~~iii~Ts 601 (731)
T TIGR02639 554 HCVLLLDE--IEKAHPDIYNILLQVMDYATLTDN-----------------------------NGRKADF-RNVILIMTS 601 (731)
T ss_pred CeEEEEec--hhhcCHHHHHHHHHhhccCeeecC-----------------------------CCcccCC-CCCEEEECC
Confidence 35678888 889988888888888887766532 2332222 257788888
Q ss_pred CCCCCCCCC------CCCc----cc--cccCCCcccccccEEEEecc
Q psy14566 300 NPIGGQYDR------TKSL----QH--NVSLSAPIMSRFDLFFVLID 334 (532)
Q Consensus 300 np~~g~~~~------~~~~----~~--ni~l~~~LLSRFDLif~l~D 334 (532)
|.-...+.. .... .. .-.|+|.|+.|||-|+++..
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~p 648 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNP 648 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCC
Confidence 873221111 0000 11 12488999999998877554
No 76
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.06 E-value=1.1 Score=45.54 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=19.0
Q ss_pred ccccccCCchHHHHHHHHHHHHHh
Q psy14566 166 LFPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 166 ~~pll~gdp~~~ksqlL~~~y~~L 189 (532)
-.++|+|.+|+||+.+++.+..++
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 347899999999999999844444
No 77
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=86.46 E-value=0.56 Score=44.10 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=30.4
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI 35 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisi 35 (532)
.|+||+.+|||++.|++..+..|..+|+.+++..
T Consensus 91 ~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 91 QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred eccceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 4899999999999999999999999999998753
No 78
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=86.39 E-value=1.2 Score=48.08 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=46.1
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc-----cCCCCCCCceeEEEeecccc-chhh--------hccceeeecccccccC
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR-----DGNSSSKATWRITTRQLESL-IRLS--------EAMAKMECLDEYEFDK 232 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r-----~g~~ss~~glt~T~RqlESl-iRLs--------EA~Akv~~~de~~vd~ 232 (532)
+.+++|.||+||+.+.+. ....... ++..-+..++. -.+.+.. .++. .|.--+.++|| +++
T Consensus 110 ~iLl~Gp~GtGKT~lAr~-lA~~l~~pf~~id~~~l~~~gyv--G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDE--Idk 184 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQT-LARILDVPFAIADATTLTEAGYV--GEDVENILLKLLQAADYDVEKAQRGIVYIDE--IDK 184 (412)
T ss_pred eEEEEcCCCCCHHHHHHH-HHHHhCCCceecchhhcccCCcc--cchHHHHHHHHHHhccccHHHcCCcEEEEec--hhh
Confidence 489999999999988777 3332221 11100111110 0112222 1221 22334688899 999
Q ss_pred CChH--------------HHHHHHHHHHhcccccc
Q psy14566 233 MDPH--------------DQVAIHEAMEQQTISIA 253 (532)
Q Consensus 233 ~d~~--------------~~~~l~eaMeqq~isi~ 253 (532)
+... .+.+|++.||...+.+.
T Consensus 185 l~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 185 IARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred hccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 9753 46789999997666663
No 79
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=86.16 E-value=0.73 Score=47.93 Aligned_cols=50 Identities=24% Similarity=0.386 Sum_probs=39.1
Q ss_pred ceeeeecccCCCcccchhHHHHHhhhhccccccC-cccccccccccccccccccceeeeecccccCCCC
Q psy14566 6 GVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGD-MNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPR 73 (532)
Q Consensus 6 GvccIDEfDkm~~~dr~~iheaMeqqtisiaKag-i~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~ 73 (532)
|++++||+++.+|..+.+|+++|+-..+++.--+ + .++-..-++| +.||.
T Consensus 114 ~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~--------------~~~~~f~via----T~Np~ 164 (329)
T COG0714 114 VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTI--------------RLPPPFIVIA----TQNPG 164 (329)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCc--------------CCCCCCEEEE----ccCcc
Confidence 6999999999999999999999999888764433 3 3445555666 67885
No 80
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=85.47 E-value=2.6 Score=47.88 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=17.0
Q ss_pred cccccCCchHHHHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYT 187 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~ 187 (532)
+.+|.|.||+||+.+.+..+.
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~ 197 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALE 197 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468889999999998887433
No 81
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=84.85 E-value=3.7 Score=45.74 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=30.5
Q ss_pred cccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhh
Q psy14566 457 RLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMA 505 (532)
Q Consensus 457 P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~A 505 (532)
..++++|.+.+...+-.|.+.+ +|=.+|||+.+++-+-..+
T Consensus 410 ~~~~~~a~~~~~~~~~~L~~y~--------WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 410 LPDSEAAAQVLAGVADPLQRYP--------WPGNVRELRNLVERLALEL 450 (526)
T ss_pred CCCCHHHHHHhHHHHHHHHhCC--------CCchHHHHHHHHHHHHHhc
Confidence 3489999988777777776653 6778999998887665543
No 82
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=84.28 E-value=7.4 Score=43.48 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=32.6
Q ss_pred hhhccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhh
Q psy14566 451 VEKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAM 504 (532)
Q Consensus 451 yar~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~ 504 (532)
+++.....+++++...+.+..-.|++.+ +|=.+|+|+.+|+-+-..
T Consensus 419 ~~~~~~~~~~~~a~~~~~~a~~~L~~y~--------WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 419 SLAALSAPFSAALRQGLQQCETLLLHYD--------WPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHcCCCCCHHHHHhhHHHHHHHHhCC--------CCchHHHHHHHHHHHHHh
Confidence 3444444588888888888777776653 677899999988755443
No 83
>CHL00195 ycf46 Ycf46; Provisional
Probab=82.51 E-value=2.5 Score=46.67 Aligned_cols=62 Identities=29% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCceecccccccccccc---cccc----ee-------eecccceeecccCCCCCCCCCCCCccccccCCCcccc--cccE
Q psy14566 265 NGVCCIDEFDNLSVTSS---KAGV----RA-------TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDL 328 (532)
Q Consensus 265 ~~~~~~~e~~~~~~~~~---kagi----~~-------~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDL 328 (532)
..|.+|||+|++-.... ..|. .. .-+...-|+||+|-.. .||++|+- |||.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~-------------~Ld~allR~GRFD~ 385 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID-------------LLPLEILRKGRFDE 385 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh-------------hCCHHHhCCCcCCe
Confidence 45788899888632211 1110 00 1244567889998652 57888885 9998
Q ss_pred EEEecccCCchh
Q psy14566 329 FFVLIDECNEIL 340 (532)
Q Consensus 329 if~l~D~~d~~~ 340 (532)
+|- .+-|+.+.
T Consensus 386 ~i~-v~lP~~~e 396 (489)
T CHL00195 386 IFF-LDLPSLEE 396 (489)
T ss_pred EEE-eCCcCHHH
Confidence 875 55566543
No 84
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=82.07 E-value=1.2 Score=46.32 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=30.2
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhh-hhccccccC
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQ-QTISIAKGD 39 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeq-qtisiaKag 39 (532)
..|+++++||+|..+|....+|+.++|. ..+.+...|
T Consensus 133 ~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~ 170 (327)
T TIGR01650 133 QHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQN 170 (327)
T ss_pred hCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCc
Confidence 3567899999999999999999999995 466665443
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.47 E-value=4.7 Score=47.45 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=26.0
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccc
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIA 253 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~ 253 (532)
.+.+.|+ ++++++.....|+.+|+.+.++-.
T Consensus 613 ~VvllDe--ieka~~~v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 613 TVVLFDE--IEKAHPDIFNLLLQILDDGRLTDS 643 (821)
T ss_pred eEEEECC--hhhCCHHHHHHHHHHhccCceecC
Confidence 5678899 999999988889999998877654
No 86
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=81.42 E-value=2.8 Score=46.45 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=39.3
Q ss_pred ceeccccccccccccccc-----------ceeee-----cccceeecccCCCCCCCCCCCCccccccCCCcccc--cccE
Q psy14566 267 VCCIDEFDNLSVTSSKAG-----------VRATL-----NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDL 328 (532)
Q Consensus 267 ~~~~~e~~~~~~~~~kag-----------i~~~l-----~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDL 328 (532)
|+|+||+|.+-.++...+ +...| ..+..||||+|... .|+++|+. |||.
T Consensus 292 IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d-------------~LDpALlRpGRfD~ 358 (512)
T TIGR03689 292 IVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNRED-------------MIDPAILRPGRLDV 358 (512)
T ss_pred eEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChh-------------hCCHhhcCccccce
Confidence 778999998744332110 00001 13567899999852 57899997 9998
Q ss_pred EEEecccCCchhhcc
Q psy14566 329 FFVLIDECNEILDYG 343 (532)
Q Consensus 329 if~l~D~~d~~~D~~ 343 (532)
.+ -.+.|+.+.=..
T Consensus 359 ~I-~~~~Pd~e~r~~ 372 (512)
T TIGR03689 359 KI-RIERPDAEAAAD 372 (512)
T ss_pred EE-EeCCCCHHHHHH
Confidence 74 556677654333
No 87
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=1.5 Score=49.64 Aligned_cols=120 Identities=24% Similarity=0.325 Sum_probs=63.0
Q ss_pred ccccCCchHHHHHHHHHHHHHhccc------cCCCCCCCceeEEEeec-cc-cchhhhcccee------eecccccccCC
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQR------DGNSSSKATWRITTRQL-ES-LIRLSEAMAKM------ECLDEYEFDKM 233 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r------~g~~ss~~glt~T~Rql-ES-liRLsEA~Akv------~~~de~~vd~~ 233 (532)
.||+|.||.||..+-+. .++--.| -|.-...+.++.--|.- .| -.|+.++..++ -+.|| +|||
T Consensus 353 LcLVGPPGVGKTSLgkS-IA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDE--IDKm 429 (782)
T COG0466 353 LCLVGPPGVGKTSLGKS-IAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDE--IDKM 429 (782)
T ss_pred EEEECCCCCCchhHHHH-HHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeec--hhhc
Confidence 58999999999998888 4433333 11000001111100100 11 13455544443 56777 7777
Q ss_pred ChHH----HHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCC
Q psy14566 234 DPHD----QVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRT 309 (532)
Q Consensus 234 d~~~----~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~ 309 (532)
..+- +.+|+|.+. || |-..|.|-+-++.+..|+ .-.+|+||-..
T Consensus 430 ~ss~rGDPaSALLEVLD---------PE-------QN~~F~DhYLev~yDLS~----------VmFiaTANsl~------ 477 (782)
T COG0466 430 GSSFRGDPASALLEVLD---------PE-------QNNTFSDHYLEVPYDLSK----------VMFIATANSLD------ 477 (782)
T ss_pred cCCCCCChHHHHHhhcC---------Hh-------hcCchhhccccCccchhh----------eEEEeecCccc------
Confidence 6542 334555432 11 112344555555555554 34556666541
Q ss_pred CCccccccCCCcccccccEE
Q psy14566 310 KSLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 310 ~~~~~ni~l~~~LLSRFDLi 329 (532)
.||.|||.|-..|
T Consensus 478 -------tIP~PLlDRMEiI 490 (782)
T COG0466 478 -------TIPAPLLDRMEVI 490 (782)
T ss_pred -------cCChHHhcceeee
Confidence 3999999999888
No 88
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=79.96 E-value=1.5 Score=50.85 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=48.4
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccC
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAAN 300 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaan 300 (532)
-|.+.|| +++++......|+..|+.+.++-. .|-...+ ..|-||.++|
T Consensus 559 sVlllDE--ieka~~~v~~~LLq~ld~G~ltd~-----------------------------~g~~vd~-rn~iiI~TsN 606 (758)
T PRK11034 559 AVLLLDE--IEKAHPDVFNLLLQVMDNGTLTDN-----------------------------NGRKADF-RNVVLVMTTN 606 (758)
T ss_pred cEEEecc--HhhhhHHHHHHHHHHHhcCeeecC-----------------------------CCceecC-CCcEEEEeCC
Confidence 3577788 888888777778888887766532 2322111 3566788888
Q ss_pred CCC--------CC--CCCCCCccc--cccCCCcccccccEEEEecc
Q psy14566 301 PIG--------GQ--YDRTKSLQH--NVSLSAPIMSRFDLFFVLID 334 (532)
Q Consensus 301 p~~--------g~--~~~~~~~~~--ni~l~~~LLSRFDLif~l~D 334 (532)
--. |. .+....+.+ .-.|+|.|+.|+|-|+++..
T Consensus 607 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~ 652 (758)
T PRK11034 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDH 652 (758)
T ss_pred cCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCC
Confidence 321 10 011000111 13689999999998766543
No 89
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=79.52 E-value=8.8 Score=36.00 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=24.4
Q ss_pred hhhcCCCceecccccccccc-------------cccccceeeecccceeecccCC
Q psy14566 260 LMLADNGVCCIDEFDNLSVT-------------SSKAGVRATLNARASILAAANP 301 (532)
Q Consensus 260 ~~~~~~~~~~~~e~~~~~~~-------------~~kagi~~~l~ar~svlAaanp 301 (532)
|-.|++|..++||+++|.+. ...-|-....+.++-|||++|-
T Consensus 89 l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 89 LEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp HHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred eeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 45667777777777776421 1123444566778889999884
No 90
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=79.00 E-value=2.8 Score=45.77 Aligned_cols=130 Identities=18% Similarity=0.098 Sum_probs=70.9
Q ss_pred ccCCCCCCchhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEe-eccccchhhhcc
Q psy14566 141 SLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTR-QLESLIRLSEAM 219 (532)
Q Consensus 141 ~l~gg~~~~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~R-qlESliRLsEA~ 219 (532)
.++|..+....++.-|.-. ...++.+++.|+.|+||.-+-+. ..+..+|.++---.-...+.+. -+||-.+=-|.|
T Consensus 142 ~liG~S~am~~l~~~i~kv--A~s~a~VLI~GESGtGKElvAr~-IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekG 218 (464)
T COG2204 142 ELVGESPAMQQLRRLIAKV--APSDASVLITGESGTGKELVARA-IHQASPRAKGPFIAVNCAAIPENLLESELFGHEKG 218 (464)
T ss_pred CceecCHHHHHHHHHHHHH--hCCCCCEEEECCCCCcHHHHHHH-HHhhCcccCCCceeeecccCCHHHHHHHhhccccc
Confidence 3444444333444444311 22466789999999999554444 7777766321100000011122 235545555555
Q ss_pred ceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccc-------------cccccce
Q psy14566 220 AKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVT-------------SSKAGVR 286 (532)
Q Consensus 220 Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~-------------~~kagi~ 286 (532)
|- +.... .-.+-|-.|++|..|+||++.|... +-.-|-+
T Consensus 219 AF---------TGA~~-------------------~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 219 AF---------TGAIT-------------------RRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred Cc---------CCccc-------------------ccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCC
Confidence 53 11110 1112256778888888888887411 2255677
Q ss_pred eeecccceeecccCC
Q psy14566 287 ATLNARASILAAANP 301 (532)
Q Consensus 287 ~~l~ar~svlAaanp 301 (532)
-+.+..+=||||+|-
T Consensus 271 ~~i~vdvRiIaaT~~ 285 (464)
T COG2204 271 KPIKVDVRIIAATNR 285 (464)
T ss_pred cccceeeEEEeecCc
Confidence 778888889999996
No 91
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=77.93 E-value=2.3 Score=50.29 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=52.9
Q ss_pred eeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCC
Q psy14566 222 MECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANP 301 (532)
Q Consensus 222 v~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp 301 (532)
+.+.|+ +++++......|+++|+.+.++- ..|..+.+ .+|.||+++|-
T Consensus 670 vlllDe--ieka~~~v~~~Ll~~l~~g~l~d-----------------------------~~g~~vd~-rn~iiI~TSn~ 717 (852)
T TIGR03346 670 VVLFDE--VEKAHPDVFNVLLQVLDDGRLTD-----------------------------GQGRTVDF-RNTVIIMTSNL 717 (852)
T ss_pred EEEEec--cccCCHHHHHHHHHHHhcCceec-----------------------------CCCeEEec-CCcEEEEeCCc
Confidence 678888 88999888888888888877663 33444444 35889999996
Q ss_pred CCCCCCC------CCCcc------ccccCCCcccccccEEEEecc
Q psy14566 302 IGGQYDR------TKSLQ------HNVSLSAPIMSRFDLFFVLID 334 (532)
Q Consensus 302 ~~g~~~~------~~~~~------~ni~l~~~LLSRFDLif~l~D 334 (532)
-...+.. ...+. ..=.|.|.|+.|||-|++..-
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~P 762 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHP 762 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCC
Confidence 3221111 01111 122488999999998766543
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=77.51 E-value=2.3 Score=50.19 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=47.5
Q ss_pred eeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCC
Q psy14566 222 MECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANP 301 (532)
Q Consensus 222 v~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp 301 (532)
+.+.|| ++++++.....|+..|....+.- ..|-...+. +|.||-++|-
T Consensus 671 vvllDE--ieka~~~v~~~Llq~ld~g~l~d-----------------------------~~Gr~vd~~-n~iiI~TSNl 718 (852)
T TIGR03345 671 VVLLDE--VEKAHPDVLELFYQVFDKGVMED-----------------------------GEGREIDFK-NTVILLTSNA 718 (852)
T ss_pred EEEEec--hhhcCHHHHHHHHHHhhcceeec-----------------------------CCCcEEecc-ccEEEEeCCC
Confidence 467788 78888877777777777766543 334444443 6888888885
Q ss_pred CCCCCCC-----C-----CCcccc------ccCCCcccccccEEEEe
Q psy14566 302 IGGQYDR-----T-----KSLQHN------VSLSAPIMSRFDLFFVL 332 (532)
Q Consensus 302 ~~g~~~~-----~-----~~~~~n------i~l~~~LLSRFDLif~l 332 (532)
-.+.|.. . ..+.+. -.|+|.|++|+| |+++
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F 764 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPY 764 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEe
Confidence 3332211 0 111111 248999999999 4443
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.39 E-value=1.3 Score=47.70 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=16.6
Q ss_pred cccccCCchHHHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMY 186 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y 186 (532)
+.+|.|.||+||+.+.+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37889999999999888743
No 94
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=76.76 E-value=1.4 Score=47.56 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=29.2
Q ss_pred CCCceeeeecccCCCcc--------------cchhHHHHHhhhhcccccc
Q psy14566 3 ADNGVCCIDEFDKMDPH--------------DQVAIHEAMEQQTISIAKG 38 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~--------------dr~~iheaMeqqtisiaKa 38 (532)
|.+||.+|||+|+|.+. -+.+|+++||...+.+...
T Consensus 172 a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 172 AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred cCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 57899999999999864 4678999999776777543
No 95
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=76.70 E-value=2.4 Score=46.73 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=71.9
Q ss_pred HhHHHHHHhhh-ccccccccCCchHHHHHHHHHHHHHhccccCCCC-C--CCceeEEEeeccccchhhhccceeeecccc
Q psy14566 153 KKDRNLYQNLT-SSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSS-S--KATWRITTRQLESLIRLSEAMAKMECLDEY 228 (532)
Q Consensus 153 R~~I~~~~~~~-~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~s-s--~~glt~T~RqlESliRLsEA~Akv~~~de~ 228 (532)
+.-+..++++. .+..+++.|..||||+-+-+. .....+|..+-- + =+.+|- --+||-.+=-|.||--=.+.
T Consensus 255 ~~~~~~akr~A~tdstVLi~GESGTGKElfA~~-IH~~S~R~~~PFIaiNCaAiPe--~LlESELFGye~GAFTGA~~-- 329 (560)
T COG3829 255 LRVLELAKRIAKTDSTVLILGESGTGKELFARA-IHNLSPRANGPFIAINCAAIPE--TLLESELFGYEKGAFTGASK-- 329 (560)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCccHHHHHHH-HHhcCcccCCCeEEEecccCCH--HHHHHHHhCcCCcccccccc--
Confidence 33333344433 356689999999999655555 777877722110 0 011111 12466666666666321111
Q ss_pred cccCCChHHHHHHHHHHHhcccccccCcchh-hhhcCCCceeccccccccc-------------ccccccceeeecccce
Q psy14566 229 EFDKMDPHDQVAIHEAMEQQTISIAKRPELA-LMLADNGVCCIDEFDNLSV-------------TSSKAGVRATLNARAS 294 (532)
Q Consensus 229 ~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~-~~~~~~~~~~~~e~~~~~~-------------~~~kagi~~~l~ar~s 294 (532)
.+--| |-+|++|-.|+||++.|.. .+-.-|-....+...-
T Consensus 330 --------------------------~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR 383 (560)
T COG3829 330 --------------------------GGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR 383 (560)
T ss_pred --------------------------CCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEE
Confidence 11223 6689999999999999941 2334566777788999
Q ss_pred eecccCCC
Q psy14566 295 ILAAANPI 302 (532)
Q Consensus 295 vlAaanp~ 302 (532)
||||+|-.
T Consensus 384 IIAATN~n 391 (560)
T COG3829 384 IIAATNRN 391 (560)
T ss_pred EEeccCcC
Confidence 99999963
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=76.54 E-value=1.2 Score=46.97 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHhh
Q psy14566 489 ITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRK 530 (532)
Q Consensus 489 iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~~ 530 (532)
.+.+.|.++++-|-.+|=.+-+..|| ..++++++++
T Consensus 327 ~sg~dl~~l~~~A~~~a~~~~~~~i~------~~d~~~a~~~ 362 (364)
T TIGR01242 327 ASGADLKAICTEAGMFAIREERDYVT------MDDFIKAVEK 362 (364)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccC------HHHHHHHHHH
Confidence 57888888888888777666666777 5666666654
No 97
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=76.20 E-value=6 Score=44.00 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=24.3
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhh
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAM 504 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~ 504 (532)
.|.|+++|.+.|..| .+|=.+|||+.+|.-+-..
T Consensus 403 ~~~ls~~a~~~L~~y---------------~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 403 RPKLAADLNTVLTRY---------------GWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCCcCHHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHh
Confidence 578999999988644 2566788888877655443
No 98
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=74.54 E-value=3.3 Score=44.63 Aligned_cols=18 Identities=17% Similarity=-0.043 Sum_probs=15.9
Q ss_pred cccccCCchHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~ 184 (532)
+.++.|.||+||+.+.+.
T Consensus 118 ~iLL~GP~GsGKT~lAra 135 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQT 135 (413)
T ss_pred eEEEECCCCcCHHHHHHH
Confidence 489999999999988777
No 99
>PLN03025 replication factor C subunit; Provisional
Probab=73.74 E-value=4.7 Score=41.70 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=18.3
Q ss_pred cccccCCchHHHHHHHHHHHHHh
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~L 189 (532)
|.++.|.||+||+.+...+..++
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999888744444
No 100
>KOG2004|consensus
Probab=73.63 E-value=1.3 Score=50.09 Aligned_cols=121 Identities=20% Similarity=0.358 Sum_probs=69.9
Q ss_pred ccccCCchHHHHHHHHHHHHHhccc----c-CCCCCCCceeEEEeec-cc-cchhhhcccee------eecccccccCCC
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQR----D-GNSSSKATWRITTRQL-ES-LIRLSEAMAKM------ECLDEYEFDKMD 234 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r----~-g~~ss~~glt~T~Rql-ES-liRLsEA~Akv------~~~de~~vd~~d 234 (532)
.|++|.||.+|..+=+.....|-+. + |.-+.-+.+..--|.- .+ -.|+.++.-++ .++|| |||+-
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDE--vDKlG 518 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDE--VDKLG 518 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeeh--hhhhC
Confidence 6899999999988877744444322 1 1111111111111111 11 24666665555 68888 88876
Q ss_pred hH----HHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCC
Q psy14566 235 PH----DQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTK 310 (532)
Q Consensus 235 ~~----~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~ 310 (532)
.. -+.+|+|.+. || |--.|.|-+=++-+..||- -.+|+||-+.
T Consensus 519 ~g~qGDPasALLElLD---------PE-------QNanFlDHYLdVp~DLSkV----------LFicTAN~id------- 565 (906)
T KOG2004|consen 519 SGHQGDPASALLELLD---------PE-------QNANFLDHYLDVPVDLSKV----------LFICTANVID------- 565 (906)
T ss_pred CCCCCChHHHHHHhcC---------hh-------hccchhhhccccccchhhe----------EEEEeccccc-------
Confidence 32 2456666653 11 1224567777777777754 4555676652
Q ss_pred CccccccCCCcccccccEE
Q psy14566 311 SLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 311 ~~~~ni~l~~~LLSRFDLi 329 (532)
.||+|||.|--+|
T Consensus 566 ------tIP~pLlDRMEvI 578 (906)
T KOG2004|consen 566 ------TIPPPLLDRMEVI 578 (906)
T ss_pred ------cCChhhhhhhhee
Confidence 5899999999887
No 101
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=73.30 E-value=2.9 Score=44.67 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=15.7
Q ss_pred ccccCCchHHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDM 185 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~ 185 (532)
.+|.|.||+||+.+.+..
T Consensus 168 vLL~GppGtGKT~lAkai 185 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred eEEECCCCCChHHHHHHH
Confidence 689999999999887773
No 102
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=73.11 E-value=2.1 Score=46.01 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=15.4
Q ss_pred ccccCCchHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~ 184 (532)
.+|.|.||+||+-+.+.
T Consensus 182 vLL~GppGTGKT~LAka 198 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKA 198 (398)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999998887
No 103
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=72.95 E-value=5.8 Score=39.31 Aligned_cols=124 Identities=22% Similarity=0.302 Sum_probs=65.7
Q ss_pred HhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeE-EEe-----eccccchhhhcccee---e
Q psy14566 153 KKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRI-TTR-----QLESLIRLSEAMAKM---E 223 (532)
Q Consensus 153 R~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~-T~R-----qlESliRLsEA~Akv---~ 223 (532)
|-++...+-+..+..+.+.|.+|++|.+.+++ ..++--+ .+ +.- +..++.|+..+-|.. .
T Consensus 20 r~~~~l~~al~~~~~~~~~GpagtGKtetik~-La~~lG~----------~~~vfnc~~~~~~~~l~ril~G~~~~GaW~ 88 (231)
T PF12774_consen 20 RCFLTLTQALSLNLGGALSGPAGTGKTETIKD-LARALGR----------FVVVFNCSEQMDYQSLSRILKGLAQSGAWL 88 (231)
T ss_dssp HHHHHHHHHHCTTTEEEEESSTTSSHHHHHHH-HHHCTT------------EEEEETTSSS-HHHHHHHHHHHHHHT-EE
T ss_pred HHHHHHHHHhccCCCCCCcCCCCCCchhHHHH-HHHHhCC----------eEEEecccccccHHHHHHHHHHHhhcCchh
Confidence 33444333333344478889899999999888 4443211 22 111 112345554433333 4
Q ss_pred ecccccccCCChHHHH-------HHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceee
Q psy14566 224 CLDEYEFDKMDPHDQV-------AIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASIL 296 (532)
Q Consensus 224 ~~de~~vd~~d~~~~~-------~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svl 296 (532)
|-|| ++.++....- .|..|+.....++. -.|-...++..|++.
T Consensus 89 cfde--fnrl~~~vLS~i~~~i~~i~~al~~~~~~~~----------------------------~~g~~i~l~~~~~iF 138 (231)
T PF12774_consen 89 CFDE--FNRLSEEVLSVISQQIQSIQDALRAKQKSFT----------------------------LEGQEIKLNPNCGIF 138 (231)
T ss_dssp EEET--CCCSSHHHHHHHHHHHHHHHHHHHCTSSEEE----------------------------ETTCEEE--TT-EEE
T ss_pred hhhh--hhhhhHHHHHHHHHHHHHHHHhhcccccccc----------------------------cCCCEEEEccceeEE
Confidence 5577 8888875432 23444444444443 457788899999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCcccccc
Q psy14566 297 AAANPIGGQYDRTKSLQHNVSLSAPIMSRF 326 (532)
Q Consensus 297 Aaanp~~g~~~~~~~~~~ni~l~~~LLSRF 326 (532)
.+.||.+.. .-.||+.|.+-|
T Consensus 139 iT~np~y~g---------r~~LP~nLk~lF 159 (231)
T PF12774_consen 139 ITMNPGYAG---------RSELPENLKALF 159 (231)
T ss_dssp EEE-B-CCC---------C--S-HHHCTTE
T ss_pred EeeccccCC---------cccCCHhHHHHh
Confidence 999996421 234777776666
No 104
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=71.72 E-value=12 Score=43.55 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=16.9
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.+|+|.+|+||..+.+.+-..|
T Consensus 41 yLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3788999999998887744444
No 105
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=71.33 E-value=2.3 Score=45.84 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=27.3
Q ss_pred CCCceeeeecccCCCc--------------ccchhHHHHHhhhhcccc
Q psy14566 3 ADNGVCCIDEFDKMDP--------------HDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 3 ad~GvccIDEfDkm~~--------------~dr~~iheaMeqqtisia 36 (532)
|.+||++|||+||+.+ +-+..|+.+||...+++.
T Consensus 180 a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 180 AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred cccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 5789999999999997 567789999985555554
No 106
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=71.01 E-value=5.2 Score=37.65 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=51.2
Q ss_pred eeecccccccCCCh-----------HHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeee-
Q psy14566 222 MECLDEYEFDKMDP-----------HDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATL- 289 (532)
Q Consensus 222 v~~~de~~vd~~d~-----------~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l- 289 (532)
+.+.|| |||.++ ..+..|+..||..+++-. .| .++
T Consensus 71 VVllDE--idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-----------------------------~g--~~vd 117 (171)
T PF07724_consen 71 VVLLDE--IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-----------------------------YG--RTVD 117 (171)
T ss_dssp EEEEET--GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-----------------------------TC--CEEE
T ss_pred hhhhHH--HhhccccccccchhhHHHHHHHHHHHhcccceecc-----------------------------cc--eEEE
Confidence 689999 999999 888999999999888743 34 222
Q ss_pred cccceeecccCCCCCCCCCCC-----C---c------cccccCCCcccccccEE
Q psy14566 290 NARASILAAANPIGGQYDRTK-----S---L------QHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 290 ~ar~svlAaanp~~g~~~~~~-----~---~------~~ni~l~~~LLSRFDLi 329 (532)
-.+|-+|+++|--........ . . .-+-.|+|.|+.|||.|
T Consensus 118 ~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 118 TSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp GTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred eCCceEEEecccccchhhhhhccccccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 247788888887533222100 0 0 11246999999999976
No 107
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=70.50 E-value=6.1 Score=40.44 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=71.6
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAME 246 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~eaMe 246 (532)
|.++.|.||.+|..+-.=...+|--+- ..++++.---+.++-++.-.+|.| -|.++|| +-.+....-..|+-|||
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~--k~tsGp~leK~gDlaaiLt~Le~~-DVLFIDE--IHrl~~~vEE~LYpaME 128 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNL--KITSGPALEKPGDLAAILTNLEEG-DVLFIDE--IHRLSPAVEEVLYPAME 128 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCe--EecccccccChhhHHHHHhcCCcC-CeEEEeh--hhhcChhHHHHhhhhhh
Confidence 589999999999876444334453210 011111111344554555555554 3467777 66666665667889999
Q ss_pred hcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccc
Q psy14566 247 QQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRF 326 (532)
Q Consensus 247 qq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRF 326 (532)
.=.+-|. +| .-.+---+...|+.= +.++|+--. | -|+.||-+||
T Consensus 129 Df~lDI~----IG------------------~gp~Arsv~ldLppF-TLIGATTr~-G------------~lt~PLrdRF 172 (332)
T COG2255 129 DFRLDII----IG------------------KGPAARSIRLDLPPF-TLIGATTRA-G------------MLTNPLRDRF 172 (332)
T ss_pred heeEEEE----Ec------------------cCCccceEeccCCCe-eEeeecccc-c------------cccchhHHhc
Confidence 8666554 00 000111244444444 444444322 1 5788999999
Q ss_pred cEEEEecccC
Q psy14566 327 DLFFVLIDEC 336 (532)
Q Consensus 327 DLif~l~D~~ 336 (532)
-+++-+.=-.
T Consensus 173 Gi~~rlefY~ 182 (332)
T COG2255 173 GIIQRLEFYT 182 (332)
T ss_pred CCeeeeecCC
Confidence 9887664433
No 108
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=69.60 E-value=3.2 Score=43.81 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=44.2
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCC
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPR 73 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~ 73 (532)
.|++|+..++|++|....-...|+.+++.+.+.+.+.+. .++....|+| .+||.
T Consensus 234 ~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~--------------~~~~d~liia----~sNe~ 287 (361)
T smart00763 234 RANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFA--------------MIPIDGLIIA----HSNES 287 (361)
T ss_pred cccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCccc--------------ccccceEEEE----eCCHH
Confidence 478999999999999999999999999999998765431 4566677887 57774
No 109
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=68.38 E-value=1.6 Score=47.17 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=24.2
Q ss_pred CCceeeeecccCCCcc------------cchhHHHHHhhhhccc
Q psy14566 4 DNGVCCIDEFDKMDPH------------DQVAIHEAMEQQTISI 35 (532)
Q Consensus 4 d~GvccIDEfDkm~~~------------dr~~iheaMeqqtisi 35 (532)
..||+|||||||+.-+ .+..|+-.||-.++++
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~ 292 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST 292 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee
Confidence 6899999999998733 4455667777777765
No 110
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.89 E-value=5 Score=44.06 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=17.2
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+.+...|
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4899999999998888744443
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=66.66 E-value=12 Score=38.39 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=32.9
Q ss_pred cCCCceeccccccccccccccc---ceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEE
Q psy14566 263 ADNGVCCIDEFDNLSVTSSKAG---VRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 263 ~~~~~~~~~e~~~~~~~~~kag---i~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLi 329 (532)
++.+|+++||++.+....+.+- +....+..|.++.++|... .++++|.|||..+
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~-------------~l~~~l~sR~~~i 155 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN-------------GIIEPLRSRCRVI 155 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh-------------hchHHHHhhceEE
Confidence 3456788888887732211111 1222346778888888531 5678999999754
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=65.95 E-value=3.8 Score=43.97 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=16.9
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||..+.+.+...+
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6788999999998877743333
No 113
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=65.91 E-value=15 Score=39.17 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=23.4
Q ss_pred cccceeecccCCCCCCCCCCCCccccccCCCcccc--cccEEEEecccCCch
Q psy14566 290 NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDLFFVLIDECNEI 339 (532)
Q Consensus 290 ~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~ 339 (532)
+.+.-||||+|=.. .|+++|+. |||-.|- .|+.+
T Consensus 266 ~~~V~VIaTTNrpd-------------~LDpALlRpGRfDk~i~---lPd~e 301 (413)
T PLN00020 266 IPRVPIIVTGNDFS-------------TLYAPLIRDGRMEKFYW---APTRE 301 (413)
T ss_pred CCCceEEEeCCCcc-------------cCCHhHcCCCCCCceeC---CCCHH
Confidence 45666777776331 58999998 9999764 45543
No 114
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=63.40 E-value=14 Score=42.97 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=37.3
Q ss_pred Cceeccccccccccccccc-------cee----e-----ecccceeecccCCCCCCCCCCCCccccccCCCccc--cccc
Q psy14566 266 GVCCIDEFDNLSVTSSKAG-------VRA----T-----LNARASILAAANPIGGQYDRTKSLQHNVSLSAPIM--SRFD 327 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~kag-------i~~----~-----l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LL--SRFD 327 (532)
.|.|+||+|.+...+...+ +.. . -+.+.-||||+|... .|+++++ +|||
T Consensus 548 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~-------------~ld~allRpgRfd 614 (733)
T TIGR01243 548 AIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD-------------ILDPALLRPGRFD 614 (733)
T ss_pred EEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh-------------hCCHhhcCCCccc
Confidence 4778999988754432111 001 0 134678999998642 5788888 5999
Q ss_pred EEEEecccCCch
Q psy14566 328 LFFVLIDECNEI 339 (532)
Q Consensus 328 Lif~l~D~~d~~ 339 (532)
.++. ...||.+
T Consensus 615 ~~i~-v~~Pd~~ 625 (733)
T TIGR01243 615 RLIL-VPPPDEE 625 (733)
T ss_pred eEEE-eCCcCHH
Confidence 8754 4556544
No 115
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=62.85 E-value=8.7 Score=43.95 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=36.9
Q ss_pred Cceeccccccccccccc--ccce----------------eeecccceeecccCCCCCCCCCCCCccccccCCCccc--cc
Q psy14566 266 GVCCIDEFDNLSVTSSK--AGVR----------------ATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIM--SR 325 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~k--agi~----------------~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LL--SR 325 (532)
.|.+|||+|.+...+.. .|-. ..-+.+.-||||+|+.. .|+++|+ .|
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~-------------~lD~Al~RpgR 312 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-------------VLDPALLRPGR 312 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh-------------hcCHHHhCCcc
Confidence 47789999998655432 1110 01145678999999863 4667777 48
Q ss_pred ccEEEEecccCCc
Q psy14566 326 FDLFFVLIDECNE 338 (532)
Q Consensus 326 FDLif~l~D~~d~ 338 (532)
||-.+. .+.||.
T Consensus 313 fdr~i~-v~~Pd~ 324 (644)
T PRK10733 313 FDRQVV-VGLPDV 324 (644)
T ss_pred cceEEE-cCCCCH
Confidence 887665 445553
No 116
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=62.79 E-value=5.3 Score=41.72 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=30.2
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.+|||+|.|++..+..|..+++.+++.
T Consensus 91 ~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~ 123 (329)
T TIGR02974 91 RADGGTLFLDELATASLLVQEKLLRVIEYGEFE 123 (329)
T ss_pred hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEE
Confidence 478999999999999999999999999888765
No 117
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=61.67 E-value=2.5 Score=45.61 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCCceeeeecccCCCcc------------cchhHHHHHhhhhccc
Q psy14566 3 ADNGVCCIDEFDKMDPH------------DQVAIHEAMEQQTISI 35 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~------------dr~~iheaMeqqtisi 35 (532)
+..||+|||||||+.-+ .+..|+-.||-.++++
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~ 290 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT 290 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee
Confidence 46799999999998743 3445666677666665
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=61.35 E-value=4.4 Score=44.70 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=15.5
Q ss_pred ccccCCchHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~ 184 (532)
.+|.|.||+||+.+.+.
T Consensus 91 iLL~GppGtGKT~la~a 107 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKA 107 (495)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999998887
No 119
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=61.23 E-value=5.8 Score=46.41 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=24.4
Q ss_pred CceeeeecccCCCcccc----hhHHHHHhh-hhccc
Q psy14566 5 NGVCCIDEFDKMDPHDQ----VAIHEAMEQ-QTISI 35 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr----~~iheaMeq-qtisi 35 (532)
+.|.+|||+||+++..+ .+++|+|+. |..+.
T Consensus 417 ~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~ 452 (784)
T PRK10787 417 NPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAF 452 (784)
T ss_pred CCEEEEEChhhcccccCCCHHHHHHHHhccccEEEE
Confidence 45899999999997654 799999984 44443
No 120
>KOG2545|consensus
Probab=60.36 E-value=18 Score=38.76 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=65.1
Q ss_pred HhhhhhhhhhccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhH
Q psy14566 444 LLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSN 523 (532)
Q Consensus 444 ll~kyi~yar~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~ 523 (532)
-++.|..-+|...=.+++|-.++|..-|+.||+.+.+. ..-.|--|+=+|.-.++-.=++++++|+...+..
T Consensus 462 q~rcyltt~r~l~~nIsee~t~~iq~dfV~mRq~n~~s--------naddLs~lLv~sRlls~S~G~ttlsre~wq~a~e 533 (543)
T KOG2545|consen 462 QFRCYLTTMRNLRANISEEMTDYIQSDFVSMRQYNKES--------NADDLSLLLVCSRLLSKSFGRTTLSREDWQAARE 533 (543)
T ss_pred HHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhhCccc--------chhHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence 46777788899999999999999999999999987643 2556777777777788888889999999998888
Q ss_pred HHHHHhh
Q psy14566 524 VEQLLRK 530 (532)
Q Consensus 524 ~~~~~~~ 530 (532)
+|.+=|.
T Consensus 534 le~lrr~ 540 (543)
T KOG2545|consen 534 LENLRRV 540 (543)
T ss_pred HHHHHHh
Confidence 8876554
No 121
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=59.76 E-value=13 Score=42.50 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=17.1
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+.+...|
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 3789999999998888744444
No 122
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=59.69 E-value=4.9 Score=44.86 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=31.7
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisia 36 (532)
.|+||++.|||++.|++..+..|..+||...+.+-
T Consensus 173 ~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~ 207 (531)
T TIGR02902 173 RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLD 207 (531)
T ss_pred ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeec
Confidence 37899999999999999999999999999887654
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=59.33 E-value=11 Score=39.97 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.2
Q ss_pred ccccCCchHHHHHHHHHHHHHhcc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQ 191 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~ 191 (532)
.++.|.||+||+.+++.++.++..
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678899999999999997666654
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=57.33 E-value=7.4 Score=45.16 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.7
Q ss_pred CCceeeeecccCCCcccchhHHHHHhhhhcccc
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMeqqtisia 36 (532)
..+|+++||+|||.|.....+.++|+.+.++-.
T Consensus 553 p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~ 585 (731)
T TIGR02639 553 PHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN 585 (731)
T ss_pred CCeEEEEechhhcCHHHHHHHHHhhccCeeecC
Confidence 458999999999999999999999999988744
No 125
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=57.07 E-value=5.6 Score=42.69 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=30.3
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+++|||++.|++..+..|+.+++.+.+.
T Consensus 231 ~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~ 263 (441)
T PRK10365 231 EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQ 263 (441)
T ss_pred ECCCCEEEEeccccCCHHHHHHHHHHHccCcEE
Confidence 478999999999999999999999999888864
No 126
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=57.01 E-value=8 Score=40.26 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=29.9
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+++|||+|.|++..+..|..+++.+.+.
T Consensus 98 ~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~ 130 (326)
T PRK11608 98 RADGGTLFLDELATAPMLVQEKLLRVIEYGELE 130 (326)
T ss_pred ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEE
Confidence 478999999999999999999999999887754
No 127
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=56.85 E-value=52 Score=37.06 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=16.8
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||..+.+.+...+
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4779999999998887744444
No 128
>CHL00176 ftsH cell division protein; Validated
Probab=56.76 E-value=7.8 Score=44.23 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=15.8
Q ss_pred cccccCCchHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~ 184 (532)
..+|.|.||+||+-+.+.
T Consensus 218 gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 368999999999998887
No 129
>PHA01747 putative ATP-dependent protease
Probab=56.04 E-value=17 Score=38.69 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=68.5
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc--cCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCC---hHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR--DGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMD---PHDQVAI 241 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r--~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d---~~~~~~l 241 (532)
|.+=.|..|||||.+.+. ..++.|. +|...|-+.|-.-. -+...=+=+.-.+.+-|| |..+. ..+.+.+
T Consensus 192 NliELgPRGTGKS~~f~e-is~fsp~~iSGG~~TvA~LFyN~---~t~~~GLVg~~D~VaFDE--Va~i~f~~~kdiv~I 265 (425)
T PHA01747 192 HIIELSNRGTGKTTTFVI-LQELFNFRYYTEPPTYANLVYDA---KTNALGLVFLSNGLIFDE--IQTWKDSNMRAINST 265 (425)
T ss_pred eEEEecCCCCChhhHHHH-hhhcCCceeeCCCCchHHheEec---CCCceeEEeeccEEEEEc--cccccCCCHHHHHHH
Confidence 344457789999988554 3333554 33222222222211 111111112223356677 55433 2445555
Q ss_pred H-HHHHhcccccccCcchhhhhcCCCceeccccccccccccccccee--eecccceeecccCCCC---CCCCCCCCcccc
Q psy14566 242 H-EAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRA--TLNARASILAAANPIG---GQYDRTKSLQHN 315 (532)
Q Consensus 242 ~-eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~--~l~ar~svlAaanp~~---g~~~~~~~~~~n 315 (532)
+ .-||++..+-. +.+-.. +.+|.|||+=+.|+.. ++|.... ..+|
T Consensus 266 MKdYMesG~FsRG----------------------------~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~-~l~~ 316 (425)
T PHA01747 266 LSTGMENCVWTRG----------------------------AGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPN-YIKN 316 (425)
T ss_pred HHHHhhcceeecC----------------------------CCCcccchhhccceeEEEecCCCCccccccccch-hHHH
Confidence 4 66999888765 433333 7889999999988763 2232211 0111
Q ss_pred -c-------cCCCcccccccEEEE
Q psy14566 316 -V-------SLSAPIMSRFDLFFV 331 (532)
Q Consensus 316 -i-------~l~~~LLSRFDLif~ 331 (532)
+ .+.++||.||-++-+
T Consensus 317 ~Lp~~~~~r~~~sA~LDRIhi~g~ 340 (425)
T PHA01747 317 YLVSYELFQSLTKAILDRIAIIIV 340 (425)
T ss_pred hcchhhhhcccchHHhhhhhhccc
Confidence 1 237789999985533
No 130
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.16 E-value=13 Score=40.79 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=17.3
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+.+...+
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999888744444
No 131
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=54.76 E-value=6.4 Score=44.85 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=32.6
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisia 36 (532)
.|+||+.+|||++.|++..+..|..+|+.+.+.+.
T Consensus 224 kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~ 258 (637)
T PRK13765 224 KAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPIT 258 (637)
T ss_pred ECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEec
Confidence 58999999999999999999999999999998873
No 132
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=54.51 E-value=10 Score=41.53 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=31.5
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.||||+..+||+..|...-|+.|..+++++++.
T Consensus 233 ~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~ 265 (464)
T COG2204 233 QANGGTLFLDEIGEMPLELQVKLLRVLQEREFE 265 (464)
T ss_pred EcCCceEEeeccccCCHHHHHHHHHHHHcCeeE
Confidence 589999999999999999999999999999886
No 133
>PRK13531 regulatory ATPase RavA; Provisional
Probab=54.11 E-value=10 Score=41.79 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=36.2
Q ss_pred eeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeee
Q psy14566 7 VCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLA 64 (532)
Q Consensus 7 vccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA 64 (532)
+.++||+.+++|..+.+|.++|+.+.+++ +|- ...++.|..+.|
T Consensus 110 lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~------------~~~lp~rfiv~A 153 (498)
T PRK13531 110 IVFLDEIWKAGPAILNTLLTAINERRFRN--GAH------------EEKIPMRLLVTA 153 (498)
T ss_pred EEeecccccCCHHHHHHHHHHHHhCeEec--CCe------------EEeCCCcEEEEE
Confidence 79999999999999999999998888886 332 236777877776
No 134
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=53.54 E-value=7.4 Score=42.35 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.8
Q ss_pred ccccCCchHHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDM 185 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~ 185 (532)
.+|.|.||+||+-+.+..
T Consensus 220 VLL~GPPGTGKT~LAraI 237 (438)
T PTZ00361 220 VILYGPPGTGKTLLAKAV 237 (438)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999988873
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=53.14 E-value=7.6 Score=45.20 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=29.8
Q ss_pred CCceeeeecccCCCcccchhHHHHHhhhhcccc
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMeqqtisia 36 (532)
..||.++||||||.|.-+..++.+|+.++++-.
T Consensus 557 p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~ 589 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN 589 (758)
T ss_pred CCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC
Confidence 458999999999999999999999999998743
No 136
>PRK06851 hypothetical protein; Provisional
Probab=52.00 E-value=17 Score=38.55 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.9
Q ss_pred HhHHHHHHhhhccc--cccccCCchHHHHHHHHHHHHHhcc
Q psy14566 153 KKDRNLYQNLTSSL--FPSIHGNEQIKKAKLLVDMYTQLRQ 191 (532)
Q Consensus 153 R~~I~~~~~~~~~~--~pll~gdp~~~ksqlL~~~y~~Lr~ 191 (532)
+|.++|+..+...+ ..++.|.||++|+.+++.++.++..
T Consensus 200 ~G~~s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~ 240 (367)
T PRK06851 200 KGAVDFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEE 240 (367)
T ss_pred CcHHhhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHh
Confidence 45555544332221 2578899999999999996666653
No 137
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=51.44 E-value=39 Score=36.86 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=54.9
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeEE--EeeccccchhhhccceeeecccccccCCC---hHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRIT--TRQLESLIRLSEAMAKMECLDEYEFDKMD---PHD 237 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~T--~RqlESliRLsEA~Akv~~~de~~vd~~d---~~~ 237 (532)
+.+=.|..|||||.+ |.++.|- +|...|.+.|-.- .|+. .++ +.-.+.+-|| |..+. .+.
T Consensus 210 NliELgPrGTGKS~v----y~eiSp~~~liSGG~~T~A~LFyn~~~~~~-GlV----~~~D~VafDE--v~~i~f~d~d~ 278 (457)
T PF13337_consen 210 NLIELGPRGTGKSYV----YKEISPYGILISGGQVTVAKLFYNMSTGQI-GLV----GRWDVVAFDE--VAGIKFKDKDE 278 (457)
T ss_pred ceEEEcCCCCCceee----hhhcCcccEEEECCCcchHHheeeccCCcc-eee----eeccEEEEEe--ccCcccCChHH
Confidence 355567779999876 7778775 5544444444331 1111 111 1222356677 44433 333
Q ss_pred HHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCC
Q psy14566 238 QVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPI 302 (532)
Q Consensus 238 ~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~ 302 (532)
...+...||++..+.. | -+..|.||++=..|..
T Consensus 279 i~imK~YMesG~fsRG----------------------------~----~~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 279 IQIMKDYMESGSFSRG----------------------------K----EEINADASMVFVGNIN 311 (457)
T ss_pred HHHHHHHHhccceeec----------------------------c----cccccceeEEEEcCcC
Confidence 4445688999988876 3 3777888888888865
No 138
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.44 E-value=18 Score=42.73 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.5
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.++.|.||+||+.+.+.+...|-
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 37899999999999888555553
No 139
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.01 E-value=82 Score=36.14 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=48.4
Q ss_pred cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHhhc
Q psy14566 455 IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKK 531 (532)
Q Consensus 455 ~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~~~ 531 (532)
=-|-++..|.+.|.++ .++.... ++..+..+|.|-.|+|.|==.|++.=++.+| +.+|+++++++
T Consensus 335 ~ip~~~~~Av~~li~~---a~R~Ag~---~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~------ae~Ve~a~~~~ 399 (647)
T COG1067 335 NIPHLDKDAVEELIRE---AARRAGD---QNKLTLRLRDLGNLVREAGDIAVSEGRKLIT------AEDVEEALQKR 399 (647)
T ss_pred CCCCCCHHHHHHHHHH---HHHhccc---cceeccCHHHHHHHHHHhhHHHhcCCcccCc------HHHHHHHHHhh
Confidence 4688999999888654 3333221 3458899999999999998899998777788 56666666653
No 140
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=50.57 E-value=9 Score=44.50 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=15.8
Q ss_pred ccccCCchHHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDM 185 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~ 185 (532)
.+|.|.||+||+.+++..
T Consensus 215 iLL~GppGtGKT~larai 232 (733)
T TIGR01243 215 VLLYGPPGTGKTLLAKAV 232 (733)
T ss_pred EEEECCCCCChHHHHHHH
Confidence 589999999999988873
No 141
>KOG0745|consensus
Probab=50.22 E-value=7.4 Score=41.99 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=26.8
Q ss_pred CCCceeeeecccCCC--------------cccchhHHHHHhhhhccccccC
Q psy14566 3 ADNGVCCIDEFDKMD--------------PHDQVAIHEAMEQQTISIAKGD 39 (532)
Q Consensus 3 ad~GvccIDEfDkm~--------------~~dr~~iheaMeqqtisiaKag 39 (532)
|-.||+.|||||||. +|.+.+|+..+|-.-|.+.+.|
T Consensus 290 AQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~ 340 (564)
T KOG0745|consen 290 AQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKG 340 (564)
T ss_pred HhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCC
Confidence 567999999999998 3455666777766666664444
No 142
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=49.92 E-value=17 Score=39.25 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=18.1
Q ss_pred cccccccCCchHHHHHHHHHHHHHhcc
Q psy14566 165 SLFPSIHGNEQIKKAKLLVDMYTQLRQ 191 (532)
Q Consensus 165 ~~~pll~gdp~~~ksqlL~~~y~~Lr~ 191 (532)
....++.|.+|++|..+-+. +....+
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~-ih~~s~ 187 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARA-LHQLSD 187 (445)
T ss_pred CCCEEEECCCCcCHHHHHHH-HHHhCC
Confidence 34468889999999876555 444443
No 143
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=49.28 E-value=9.9 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.1
Q ss_pred ceeeeec-ccCCCcccchhHHHHHhh
Q psy14566 6 GVCCIDE-FDKMDPHDQVAIHEAMEQ 30 (532)
Q Consensus 6 GvccIDE-fDkm~~~dr~~iheaMeq 30 (532)
+++++|| |.||++..+..+.++++|
T Consensus 65 ~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 65 RLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp SEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 6899999 899999999888888865
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=48.73 E-value=12 Score=44.25 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=29.5
Q ss_pred CceeeeecccCCCcccchhHHHHHhhhhccccc
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAK 37 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMeqqtisiaK 37 (532)
..|+++||++||.|.-+..|.++|+.+.++-.+
T Consensus 668 ~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence 358999999999999999999999999988543
No 145
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=48.72 E-value=10 Score=38.56 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=15.8
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+...+-..|
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHH
Confidence 6788999999987766633344
No 146
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=48.62 E-value=15 Score=39.58 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=29.8
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
|+||+++|||++.|++..+..|..+++.+.+.
T Consensus 232 a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~ 263 (445)
T TIGR02915 232 AHGGTLFLDEIGDLPLNLQAKLLRFLQERVIE 263 (445)
T ss_pred CCCCEEEEechhhCCHHHHHHHHHHHhhCeEE
Confidence 88999999999999999999999999988764
No 147
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=48.47 E-value=13 Score=38.95 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=18.6
Q ss_pred hccceeeecccccccCCChHHHHHHHHHHHh
Q psy14566 217 EAMAKMECLDEYEFDKMDPHDQVAIHEAMEQ 247 (532)
Q Consensus 217 EA~Akv~~~de~~vd~~d~~~~~~l~eaMeq 247 (532)
+++-||..+|+ ++.|+..-+.+|+..||.
T Consensus 104 ~~~~kv~iI~~--a~~m~~~aaNaLLK~LEE 132 (328)
T PRK05707 104 LGGRKVVLIEP--AEAMNRNAANALLKSLEE 132 (328)
T ss_pred cCCCeEEEECC--hhhCCHHHHHHHHHHHhC
Confidence 45666666666 666666666666666665
No 148
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=48.12 E-value=15 Score=40.92 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.2
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.+|||++.|++..+..|..+++.+.+.
T Consensus 288 ~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~ 320 (534)
T TIGR01817 288 LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFE 320 (534)
T ss_pred ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEE
Confidence 478999999999999999999999999887765
No 149
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=48.12 E-value=14 Score=39.16 Aligned_cols=66 Identities=20% Similarity=0.134 Sum_probs=45.5
Q ss_pred ccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCC
Q psy14566 230 FDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRT 309 (532)
Q Consensus 230 vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~ 309 (532)
+.|.+.+-...|+.+++.+.+.+. |....++...-|||++||.. |+..
T Consensus 245 i~K~~~~~l~~LL~~~qE~~v~~~------------------------------~~~~~~~~d~liia~sNe~e--~~~~ 292 (361)
T smart00763 245 MFKADIKFLHPLLTATQEGNIKGT------------------------------GGFAMIPIDGLIIAHSNESE--WQRF 292 (361)
T ss_pred hhcCCHHHHHHHhhhhhcceEecC------------------------------CcccccccceEEEEeCCHHH--Hhhh
Confidence 777777777777888887777654 33446677779999999962 2222
Q ss_pred CCccccccCCCcccccccEEEE
Q psy14566 310 KSLQHNVSLSAPIMSRFDLFFV 331 (532)
Q Consensus 310 ~~~~~ni~l~~~LLSRFDLif~ 331 (532)
+ |...+.+|+.|+..|.+
T Consensus 293 ~----~~k~~eaf~dR~~~i~v 310 (361)
T smart00763 293 K----SNKKNEALLDRIIKVKV 310 (361)
T ss_pred h----ccccchhhhhceEEEeC
Confidence 2 23346999999987744
No 150
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=47.73 E-value=22 Score=41.02 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=15.6
Q ss_pred cccccccCCchHHHHHHHHH
Q psy14566 165 SLFPSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 165 ~~~pll~gdp~~~ksqlL~~ 184 (532)
...++++|.||+||+.+-+.
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ 418 (686)
T PRK15429 399 DSTVLILGETGTGKELIARA 418 (686)
T ss_pred CCCEEEECCCCcCHHHHHHH
Confidence 34467889999999877666
No 151
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=47.67 E-value=12 Score=42.50 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=25.5
Q ss_pred hhcCCCceeccccccccc-------ccccccc------eeeecccceeecccCCC
Q psy14566 261 MLADNGVCCIDEFDNLSV-------TSSKAGV------RATLNARASILAAANPI 302 (532)
Q Consensus 261 ~~~~~~~~~~~e~~~~~~-------~~~kagi------~~~l~ar~svlAaanp~ 302 (532)
-.|++|..|+||++.|.. ...+.|. .-..+.++-||+|+|..
T Consensus 413 ~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 413 ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 356777777777777741 1122232 33445577899999863
No 152
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=47.21 E-value=21 Score=39.53 Aligned_cols=43 Identities=28% Similarity=0.426 Sum_probs=27.5
Q ss_pred hhhcCCCceecccccccccc-------ccc------ccceeeecccceeecccCCC
Q psy14566 260 LMLADNGVCCIDEFDNLSVT-------SSK------AGVRATLNARASILAAANPI 302 (532)
Q Consensus 260 ~~~~~~~~~~~~e~~~~~~~-------~~k------agi~~~l~ar~svlAaanp~ 302 (532)
|-.+++|.+++||++.|... ..+ -|-..+.+..+-|||++|..
T Consensus 277 ~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 277 FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred hhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 34678888888888888522 112 22233455677888888763
No 153
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=47.03 E-value=50 Score=33.84 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEee-----------------------------ccccchhhh
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQ-----------------------------LESLIRLSE 217 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~Rq-----------------------------lESliRLsE 217 (532)
+.++.|.||+||+.+.+.+..++ .+.+.....+.+...+ .+-...+.+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL---YGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLK 114 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---cCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHH
Q ss_pred ---------ccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceee
Q psy14566 218 ---------AMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRAT 288 (532)
Q Consensus 218 ---------A~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~ 288 (532)
+..++.+.|+ ++.++......|...|+...-...
T Consensus 115 ~~~~~~~~~~~~~vlilDe--~~~l~~~~~~~L~~~le~~~~~~~----------------------------------- 157 (337)
T PRK12402 115 EYASYRPLSADYKTILLDN--AEALREDAQQALRRIMEQYSRTCR----------------------------------- 157 (337)
T ss_pred HHHhcCCCCCCCcEEEEeC--cccCCHHHHHHHHHHHHhccCCCe-----------------------------------
Q ss_pred ecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEE
Q psy14566 289 LNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFV 331 (532)
Q Consensus 289 l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~ 331 (532)
-|+++.+|. .+.++|.||+..+.+
T Consensus 158 -----~Il~~~~~~--------------~~~~~L~sr~~~v~~ 181 (337)
T PRK12402 158 -----FIIATRQPS--------------KLIPPIRSRCLPLFF 181 (337)
T ss_pred -----EEEEeCChh--------------hCchhhcCCceEEEe
No 154
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=46.98 E-value=17 Score=39.30 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=29.8
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.+|||+|.|++.-+..|..+++.+.+.
T Consensus 235 ~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~ 267 (457)
T PRK11361 235 RANEGTLLLDEIGEMPLVLQAKLLRILQEREFE 267 (457)
T ss_pred ECCCCEEEEechhhCCHHHHHHHHHHHhcCcEE
Confidence 378999999999999999999999999887654
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=46.78 E-value=12 Score=44.03 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred CceeeeecccCCCcccchhHHHHHhhhhcccccc
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKG 38 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKa 38 (532)
..|+++||+|||.|.-...|..+||.+.++-+++
T Consensus 612 ~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g 645 (821)
T CHL00095 612 YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG 645 (821)
T ss_pred CeEEEECChhhCCHHHHHHHHHHhccCceecCCC
Confidence 3689999999999999999999999999986554
No 156
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=46.78 E-value=16 Score=39.52 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI 35 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisi 35 (532)
.|+||+.+|||++.|++..+..|..+++.+.+..
T Consensus 226 ~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~ 259 (463)
T TIGR01818 226 QADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYR 259 (463)
T ss_pred ECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEE
Confidence 3789999999999999999999999998887753
No 157
>CHL00181 cbbX CbbX; Provisional
Probab=45.22 E-value=10 Score=38.85 Aligned_cols=15 Identities=40% Similarity=0.282 Sum_probs=13.4
Q ss_pred CCCceeeeecccCCC
Q psy14566 3 ADNGVCCIDEFDKMD 17 (532)
Q Consensus 3 ad~GvccIDEfDkm~ 17 (532)
|.|||.+|||+|.+.
T Consensus 121 a~ggVLfIDE~~~l~ 135 (287)
T CHL00181 121 AMGGVLFIDEAYYLY 135 (287)
T ss_pred ccCCEEEEEccchhc
Confidence 679999999999984
No 158
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=43.82 E-value=13 Score=42.32 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=31.5
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccccc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAK 37 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaK 37 (532)
+.||+.+|||++.|++..+..|..+|+++++.+..
T Consensus 264 asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~ 298 (615)
T TIGR02903 264 AHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSS 298 (615)
T ss_pred cCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeec
Confidence 46899999999999999999999999999876653
No 159
>KOG0079|consensus
Probab=43.31 E-value=16 Score=33.70 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=21.4
Q ss_pred HhHHHHHHhhhccccccccCCchHHHHHHHHHH
Q psy14566 153 KKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDM 185 (532)
Q Consensus 153 R~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~ 185 (532)
|.|-|+++ .|++|||+.+|+.||..|
T Consensus 3 r~~dhLfk-------llIigDsgVGKssLl~rF 28 (198)
T KOG0079|consen 3 RDYDHLFK-------LLIIGDSGVGKSSLLLRF 28 (198)
T ss_pred ccHHHHHH-------HHeecCCcccHHHHHHHH
Confidence 56677666 789999999999998873
No 160
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.29 E-value=79 Score=35.53 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=17.9
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.++.|.||+||+.+.+.+...|-
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999998888444443
No 161
>PRK04195 replication factor C large subunit; Provisional
Probab=43.23 E-value=37 Score=37.30 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=24.5
Q ss_pred CCCceecccccccccccccccceee----ecccceeecccCCC
Q psy14566 264 DNGVCCIDEFDNLSVTSSKAGVRAT----LNARASILAAANPI 302 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~kagi~~~----l~ar~svlAaanp~ 302 (532)
...+++|||+|.+.....++|+..- -++++.||.+||..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~ 140 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDP 140 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCc
Confidence 4558999999998643222332221 15677788888864
No 162
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=42.77 E-value=20 Score=38.75 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=25.4
Q ss_pred hhcCCCceecccccccccc-------------cccccceeeecccceeecccCCC
Q psy14566 261 MLADNGVCCIDEFDNLSVT-------------SSKAGVRATLNARASILAAANPI 302 (532)
Q Consensus 261 ~~~~~~~~~~~e~~~~~~~-------------~~kagi~~~l~ar~svlAaanp~ 302 (532)
-.+++|+.++||++.|... ..+.|-....+..+-|++++|+.
T Consensus 234 ~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 234 ERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred EECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 3456666666666666311 11334455566677789999863
No 163
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.75 E-value=46 Score=38.25 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=16.9
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+.+...|
T Consensus 40 yLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 40 YLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4889999999998877744444
No 164
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=42.48 E-value=20 Score=39.40 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=41.2
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCC
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNP 72 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp 72 (532)
|||||....||+.-|...-+..|.-|...|.|-.- | |-.++.-..-|+| |+|-
T Consensus 315 lAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRv--G------------~~r~ikVDVRiIA----ATNR 367 (550)
T COG3604 315 LADGGTLFLDEIGELPLALQAKLLRVLQEGEIERV--G------------GDRTIKVDVRVIA----ATNR 367 (550)
T ss_pred ecCCCeEechhhccCCHHHHHHHHHHHhhcceeec--C------------CCceeEEEEEEEe----ccch
Confidence 79999999999999999999999999977777521 2 1235555667787 5654
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=42.36 E-value=43 Score=36.61 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=30.0
Q ss_pred eeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecc
Q psy14566 286 RATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLID 334 (532)
Q Consensus 286 ~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D 334 (532)
...+|...-||||.|... +++. -+..+|.-||..|=+.-|
T Consensus 319 ~f~iP~Nl~IIgTMNt~D------rs~~---~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 319 RFYVPENVYIIGLMNTAD------RSLA---VVDYALRRRFSFIDIEPG 358 (459)
T ss_pred cccCCCCeEEEEecCccc------cchh---hccHHHHhhhheEEecCC
Confidence 357899999999999974 2322 378999999988766543
No 166
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=42.17 E-value=24 Score=36.30 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.8
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.+|.||..+.+.++..+
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 3788999999999988855555
No 167
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.65 E-value=41 Score=37.38 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=18.2
Q ss_pred cccCCchHHHHHHHHHHHHHhc
Q psy14566 169 SIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 169 ll~gdp~~~ksqlL~~~y~~Lr 190 (532)
+++|.||+||+.+.+.+...+-
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999888555553
No 168
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=41.06 E-value=23 Score=40.78 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.2
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
+|+||+++|||++.+++..+..|..+++.+.+.
T Consensus 468 ~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~ 500 (686)
T PRK15429 468 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 500 (686)
T ss_pred hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEE
Confidence 478999999999999999999999999887665
No 169
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=41.03 E-value=21 Score=39.53 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.0
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.+|||+|.|++.-+..|..+++.+.+.
T Consensus 279 ~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 279 LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQ 311 (509)
T ss_pred hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEe
Confidence 489999999999999999999999999887763
No 170
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=39.87 E-value=21 Score=40.72 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=30.4
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.+|||++.|++..+..|..+++.+.+.
T Consensus 414 ~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~ 446 (638)
T PRK11388 414 LAHGGTLFLEKVEYLSPELQSALLQVLKTGVIT 446 (638)
T ss_pred ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEE
Confidence 489999999999999999999999999887775
No 171
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.83 E-value=19 Score=41.82 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhh------ccceeeecccccccCCChHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSE------AMAKMECLDEYEFDKMDPHDQVA 240 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsE------A~Akv~~~de~~vd~~d~~~~~~ 240 (532)
+.++.|.||+||+.+.+.+...+... -..-......+++....+.-++ ..-.+.++|| ++.++...+.+
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~---f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDE--Ih~Ln~~qQda 128 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAH---FSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDE--VHRFNKAQQDA 128 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCc---ceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeC--hhhCCHHHHHH
Q ss_pred HHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCC
Q psy14566 241 IHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSA 320 (532)
Q Consensus 241 l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~ 320 (532)
|...||...+.+. +++++ .....+.+
T Consensus 129 LL~~lE~g~IiLI-------------------------------------------~aTTe-----------np~~~l~~ 154 (725)
T PRK13341 129 LLPWVENGTITLI-------------------------------------------GATTE-----------NPYFEVNK 154 (725)
T ss_pred HHHHhcCceEEEE-------------------------------------------EecCC-----------ChHhhhhh
Q ss_pred cccccccEEEE
Q psy14566 321 PIMSRFDLFFV 331 (532)
Q Consensus 321 ~LLSRFDLif~ 331 (532)
+|+||..++.+
T Consensus 155 aL~SR~~v~~l 165 (725)
T PRK13341 155 ALVSRSRLFRL 165 (725)
T ss_pred Hhhccccceec
No 172
>PRK15115 response regulator GlrR; Provisional
Probab=39.45 E-value=17 Score=39.16 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=30.0
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.+|||+|.|++..+..|..+++.+.+.
T Consensus 226 ~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~ 258 (444)
T PRK15115 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVR 258 (444)
T ss_pred ECCCCEEEEEccccCCHHHHHHHHHHHhhCCEE
Confidence 378999999999999999999999999988763
No 173
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=39.22 E-value=27 Score=39.54 Aligned_cols=142 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhhhhhhccccCCCCCCchhhHhHHHHHHhhhcccc-ccccCCchHHHHHHHHHHHHHhccccCC---------------
Q psy14566 132 RNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLF-PSIHGNEQIKKAKLLVDMYTQLRQRDGN--------------- 195 (532)
Q Consensus 132 i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~-pll~gdp~~~ksqlL~~~y~~Lr~r~g~--------------- 195 (532)
..++++.-..-|.++-.++.+.+.+.-+..-.+-.| .++.|.||+||+.+.+.+...|......
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Q ss_pred ---------CCCCCceeE-EEeeccccchh--hhccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhc
Q psy14566 196 ---------SSSKATWRI-TTRQLESLIRL--SEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLA 263 (532)
Q Consensus 196 ---------~ss~~glt~-T~RqlESliRL--sEA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~ 263 (532)
-.......+ .+|.+-..... .+++-++..+|+ ++.|......+|...||...-.+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDE--ad~Lt~~A~NaLLKtLEEPp~~tv---------- 151 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDE--AHMLSTSAWNALLKTLEEPPKHVV---------- 151 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEec--hHhCCHHHHHHHHHHHHhCCCcEE----------
Q ss_pred CCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEE
Q psy14566 264 DNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLi 329 (532)
-|+++.+|. .|+++|+||+..+
T Consensus 152 ------------------------------fIL~Tt~~~--------------KLl~TI~SRcq~i 173 (605)
T PRK05896 152 ------------------------------FIFATTEFQ--------------KIPLTIISRCQRY 173 (605)
T ss_pred ------------------------------EEEECCChH--------------hhhHHHHhhhhhc
No 174
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.20 E-value=20 Score=40.89 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=17.7
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||..+.+.+...|
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 6889999999999888844444
No 175
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=38.97 E-value=14 Score=41.35 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.8
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.++||++.|++.-+..|..+++.+++.
T Consensus 320 ~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 320 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT 352 (538)
T ss_pred ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE
Confidence 589999999999999999999999999988776
No 176
>PRK15115 response regulator GlrR; Provisional
Probab=38.65 E-value=32 Score=37.06 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=17.2
Q ss_pred cccccccCCchHHHHHHHHHHHHHhc
Q psy14566 165 SLFPSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 165 ~~~pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
...+++.|.+|++|..+-+. .....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~-ih~~s 181 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQA-IHNAS 181 (444)
T ss_pred CCeEEEEcCCcchHHHHHHH-HHHhc
Confidence 34468889999999876554 44443
No 177
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=38.49 E-value=46 Score=32.12 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=58.6
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQ 247 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~eaMeq 247 (532)
|.|+|.-|++||.+++. |.+.-- . ..+. ....-+....+ .+..+.+.|| ++.+...+...|...+-.
T Consensus 55 lvl~G~QG~GKStf~~~----L~~~~~-~---d~~~-~~~~kd~~~~l--~~~~iveldE--l~~~~k~~~~~lK~~iT~ 121 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRK----LGPEYF-S---DSIN-DFDDKDFLEQL--QGKWIVELDE--LDGLSKKDVEALKSFITR 121 (198)
T ss_pred eeEecCCcccHHHHHHH----HhHHhc-c---Cccc-cCCCcHHHHHH--HHhHheeHHH--HhhcchhhHHHHHHHhcc
Confidence 88999999999998776 322200 0 0000 01111122222 2334456677 777777777777777777
Q ss_pred cccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCC
Q psy14566 248 QTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPI 302 (532)
Q Consensus 248 q~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~ 302 (532)
++..+- ...+.-..+.+-+|+++|++|..
T Consensus 122 ~~~~~R--------------------------~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 122 RTDTYR--------------------------PPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred cceeee--------------------------cCCcCcceeeceeEEEEeccCCc
Confidence 666654 11345678889999999999984
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.21 E-value=31 Score=39.01 Aligned_cols=139 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhhhhhhccccCCCCCCchhhHhHHHHHHhhhccccc-cccCCchHHHHHHHHHHHHHhccccCC---------------
Q psy14566 132 RNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFP-SIHGNEQIKKAKLLVDMYTQLRQRDGN--------------- 195 (532)
Q Consensus 132 i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~p-ll~gdp~~~ksqlL~~~y~~Lr~r~g~--------------- 195 (532)
..|+.+.--.-|..+-.++.+.+.+..+..-.+-.|. ++.|.||+||..+.+-+...|-...+.
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Q ss_pred ---------CCCCCceeE-EEeeccccchhh--hccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhc
Q psy14566 196 ---------SSSKATWRI-TTRQLESLIRLS--EAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLA 263 (532)
Q Consensus 196 ---------~ss~~glt~-T~RqlESliRLs--EA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~ 263 (532)
-.......+ .+|++-...... ++.-|+..+|+ ++.+......+|+..||.---.+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIde--v~~Lt~~a~naLLk~LEepp~~~~---------- 151 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDE--VHMLSTNAFNALLKTLEEPPPHVK---------- 151 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEC--hhhCCHHHHHHHHHHHHcCCCCeE----------
Q ss_pred CCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccc
Q psy14566 264 DNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRF 326 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRF 326 (532)
-|+++.+|. +|+++|+||.
T Consensus 152 ------------------------------fIl~t~~~~--------------kl~~tI~SRc 170 (576)
T PRK14965 152 ------------------------------FIFATTEPH--------------KVPITILSRC 170 (576)
T ss_pred ------------------------------EEEEeCChh--------------hhhHHHHHhh
No 179
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.61 E-value=19 Score=37.50 Aligned_cols=15 Identities=47% Similarity=0.820 Sum_probs=13.5
Q ss_pred CCCceeeeecccCCC
Q psy14566 3 ADNGVCCIDEFDKMD 17 (532)
Q Consensus 3 ad~GvccIDEfDkm~ 17 (532)
|-+||.-|||+||+.
T Consensus 161 AerGIIyIDEIDKIa 175 (408)
T COG1219 161 AERGIIYIDEIDKIA 175 (408)
T ss_pred HhCCeEEEechhhhh
Confidence 678999999999985
No 180
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=37.34 E-value=19 Score=37.32 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=27.1
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
+.++++++|||++.+++.....+..+||...+.
T Consensus 100 l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 100 LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLD 132 (328)
T ss_pred cccCCEEEEecHhhcchHHHHHHHHHHHhccee
Confidence 357899999999999977666788899977654
No 181
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=36.97 E-value=29 Score=37.62 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=30.5
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI 35 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisi 35 (532)
.|+||..+|||+|.|++..+..|..+++.+.+..
T Consensus 230 ~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~ 263 (469)
T PRK10923 230 QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYR 263 (469)
T ss_pred ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEe
Confidence 3689999999999999999999999999887653
No 182
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=36.59 E-value=43 Score=37.75 Aligned_cols=102 Identities=21% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHH
Q psy14566 162 LTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAI 241 (532)
Q Consensus 162 ~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l 241 (532)
...++..++.|.||++|..+.+. +.+=+...|.. |--.......++
T Consensus 333 ~~~~~pvll~GEtGtGKe~lara-iH~~s~~~gpf---------------------------------vAvNCaAip~~l 378 (606)
T COG3284 333 AATDLPVLLQGETGTGKEVLARA-IHQNSEAAGPF---------------------------------VAVNCAAIPEAL 378 (606)
T ss_pred hhcCCCeEecCCcchhHHHHHHH-HHhcccccCCe---------------------------------EEEEeccchHHh
Q ss_pred HHHHHhccccccc------CcchhhhhcCCCceeccccccc---------------ccccccccceeeecccceeecccC
Q psy14566 242 HEAMEQQTISIAK------RPELALMLADNGVCCIDEFDNL---------------SVTSSKAGVRATLNARASILAAAN 300 (532)
Q Consensus 242 ~eaMeqq~isi~~------~~~~~~~~~~~~~~~~~e~~~~---------------~~~~~kagi~~~l~ar~svlAaan 300 (532)
.|.|==+..-.++ .|-+.|-++|+|..|+||+++| .|++ -+|-. -+-..-||||++
T Consensus 379 iesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p-~g~~~--~~vdirvi~ath 455 (606)
T COG3284 379 IESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTP-LGGTR--IKVDIRVIAATH 455 (606)
T ss_pred hhHHHhccCccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceec-cCCcc--eeEEEEEEeccC
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=36.41 E-value=32 Score=31.82 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=18.2
Q ss_pred hccceeeecccccccCCChHHHHHHHHHHHh
Q psy14566 217 EAMAKMECLDEYEFDKMDPHDQVAIHEAMEQ 247 (532)
Q Consensus 217 EA~Akv~~~de~~vd~~d~~~~~~l~eaMeq 247 (532)
+++-|+..+++ ++.|...-+.+|+..||.
T Consensus 100 ~~~~KviiI~~--ad~l~~~a~NaLLK~LEe 128 (162)
T PF13177_consen 100 EGKYKVIIIDE--ADKLTEEAQNALLKTLEE 128 (162)
T ss_dssp TSSSEEEEEET--GGGS-HHHHHHHHHHHHS
T ss_pred cCCceEEEeeh--HhhhhHHHHHHHHHHhcC
Confidence 34566666666 666666666666666665
No 184
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=36.40 E-value=18 Score=35.87 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=29.2
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccc-cccCc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI-AKGDM 40 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisi-aKagi 40 (532)
+..+-|..|||+-.+++..+..++-+||..+|.+ ..+|-
T Consensus 99 l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 99 LKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp --TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSS
T ss_pred cCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccc
Confidence 3456799999999999999999999999999964 34553
No 185
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.35 E-value=62 Score=36.02 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=17.0
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||..+.+.+...|
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4899999999998877744444
No 186
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.89 E-value=41 Score=38.54 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred chhhHhHHHHHHhhhccccc-cccCCchHHHHHHHHHHHHHhcc-----------------------ccCCCCCCCceeE
Q psy14566 149 NEQIKKDRNLYQNLTSSLFP-SIHGNEQIKKAKLLVDMYTQLRQ-----------------------RDGNSSSKATWRI 204 (532)
Q Consensus 149 ~~~lR~~I~~~~~~~~~~~p-ll~gdp~~~ksqlL~~~y~~Lr~-----------------------r~g~~ss~~glt~ 204 (532)
++.+.+.+..+..-.+-.|. ++.|.+|+||..+.+.+...|-- ..|....--.+.+
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdA 100 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDA 100 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecc
Q ss_pred E-------Eeeccccchh--hhccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccc
Q psy14566 205 T-------TRQLESLIRL--SEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDN 275 (532)
Q Consensus 205 T-------~RqlESliRL--sEA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~ 275 (532)
. +|++...... .+++-||.++|| ++.|...-..+|+..||.---.+.
T Consensus 101 as~~gVDdIReLie~~~~~P~~gr~KViIIDE--ah~Ls~~AaNALLKTLEEPP~~v~---------------------- 156 (700)
T PRK12323 101 ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDE--VHMLTNHAFNAMLKTLEEPPEHVK---------------------- 156 (700)
T ss_pred cccCCHHHHHHHHHHHHhchhcCCceEEEEEC--hHhcCHHHHHHHHHhhccCCCCce----------------------
Q ss_pred cccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccc
Q psy14566 276 LSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRF 326 (532)
Q Consensus 276 ~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRF 326 (532)
-||++.+|. .|+++++||.
T Consensus 157 ------------------FILaTtep~--------------kLlpTIrSRC 175 (700)
T PRK12323 157 ------------------FILATTDPQ--------------KIPVTVLSRC 175 (700)
T ss_pred ------------------EEEEeCChH--------------hhhhHHHHHH
No 187
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=35.52 E-value=51 Score=31.94 Aligned_cols=72 Identities=13% Similarity=0.232 Sum_probs=43.0
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQ 247 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~eaMeq 247 (532)
.++.|.||+||+.++..++.++... | ...+.++..+...... ...++.+.++|+ ++.++...+..|...|+.
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~-~----~~~~~i~~~~~~~~~~-~~~~~~~liiDd--i~~l~~~~~~~L~~~~~~ 116 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYG-G----RNARYLDAASPLLAFD-FDPEAELYAVDD--VERLDDAQQIALFNLFNR 116 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC-C----CcEEEEehHHhHHHHh-hcccCCEEEEeC--hhhcCchHHHHHHHHHHH
Confidence 6788999999999999866555432 1 1112223333321111 122456678888 877777666667666654
No 188
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=35.40 E-value=19 Score=40.08 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=29.8
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+++|||+|.|++..+..|..+++.+++.
T Consensus 296 ~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~ 328 (520)
T PRK10820 296 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFR 328 (520)
T ss_pred hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcc
Confidence 378999999999999999999999999887754
No 189
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=33.71 E-value=1.1e+02 Score=34.21 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=17.6
Q ss_pred cccCCchHHHHHHHHHHHHHhc
Q psy14566 169 SIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 169 ll~gdp~~~ksqlL~~~y~~Lr 190 (532)
++.|.||++|+.+.+.+...|-
T Consensus 40 Lf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 40 LFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred EEECCCCCcHHHHHHHHHHHhc
Confidence 7899999999998887555553
No 190
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.32 E-value=70 Score=33.58 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=15.5
Q ss_pred ccccCCchHHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDM 185 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~ 185 (532)
.++.|.||++|+.+...+
T Consensus 42 ~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 42 LLFCGPRGVGKTTCARIL 59 (367)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578899999999888874
No 191
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=33.15 E-value=24 Score=33.13 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.0
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
++++|+||.+||.+++..+..++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999666665
No 192
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=33.06 E-value=18 Score=36.89 Aligned_cols=15 Identities=40% Similarity=0.282 Sum_probs=13.2
Q ss_pred CCCceeeeecccCCC
Q psy14566 3 ADNGVCCIDEFDKMD 17 (532)
Q Consensus 3 ad~GvccIDEfDkm~ 17 (532)
|.+|+.+|||++.|.
T Consensus 120 a~~gvL~iDEi~~L~ 134 (284)
T TIGR02880 120 AMGGVLFIDEAYYLY 134 (284)
T ss_pred ccCcEEEEechhhhc
Confidence 578999999999984
No 193
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.83 E-value=68 Score=37.06 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=17.3
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+.+...|
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5889999999998888744444
No 194
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=32.80 E-value=41 Score=36.00 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=14.2
Q ss_pred ccccccCCchHHHHHHHHH
Q psy14566 166 LFPSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 166 ~~pll~gdp~~~ksqlL~~ 184 (532)
...++.|++|++|..+-+.
T Consensus 163 ~~vli~ge~g~gk~~~a~~ 181 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARA 181 (441)
T ss_pred CeEEEEecCCCCHHHHHHH
Confidence 3467789999999876555
No 195
>KOG0733|consensus
Probab=32.75 E-value=61 Score=36.79 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=13.9
Q ss_pred ccccCCchHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~ 184 (532)
++++|.||++|.-|-+.
T Consensus 226 vLlHGPPGCGKT~lA~A 242 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANA 242 (802)
T ss_pred eeeeCCCCccHHHHHHH
Confidence 38999999999876555
No 196
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.68 E-value=69 Score=33.58 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=61.6
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAME 246 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~eaMe 246 (532)
.++|+|..|.+|.-|-+. ..++-. +|.++-+- --|.|||= --.|+... |...+.
T Consensus 99 NILLiGPTGsGKTlLAqT-LAk~Ln----------VPFaiADA---TtLTEAGY----------VGEDVENi--llkLlq 152 (408)
T COG1219 99 NILLIGPTGSGKTLLAQT-LAKILN----------VPFAIADA---TTLTEAGY----------VGEDVENI--LLKLLQ 152 (408)
T ss_pred cEEEECCCCCcHHHHHHH-HHHHhC----------CCeeeccc---cchhhccc----------cchhHHHH--HHHHHH
Confidence 389999889999654443 444431 23333332 23567762 22233221 223333
Q ss_pred hcccccccCcchhhhhcCCCceecccccccc-------ccc--ccccce-eeecccceeecccCCCCCCCCCCCCc
Q psy14566 247 QQTISIAKRPELALMLADNGVCCIDEFDNLS-------VTS--SKAGVR-ATLNARASILAAANPIGGQYDRTKSL 312 (532)
Q Consensus 247 qq~isi~~~~~~~~~~~~~~~~~~~e~~~~~-------~~~--~kagi~-~~l~ar~svlAaanp~~g~~~~~~~~ 312 (532)
....-| --|..|+..|||+||+. +|+ |--|+. +-|+---.-+|...|.+||--|+.-+
T Consensus 153 aadydV--------~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 153 AADYDV--------ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred HcccCH--------HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 333333 36789999999999983 222 223321 22233334467888999987776543
No 197
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.42 E-value=1.1e+02 Score=34.28 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=16.9
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+.+...|
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999998877744444
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=31.49 E-value=27 Score=29.93 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.+.++++|||++.+.+.....+...|++....
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~ 114 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDL 114 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCce
Confidence 46799999999999777777788888765443
No 199
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=30.75 E-value=1.5e+02 Score=25.13 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=43.4
Q ss_pred ccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHH
Q psy14566 458 LIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLL 528 (532)
Q Consensus 458 ~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~ 528 (532)
.|++++..+|...|.. ..+|.|-.-.++|+|---|=|.=++.|++ .+|.||+
T Consensus 42 ~l~~~~~~~l~~~~~~-------------~~lS~R~~~rilrvARTIADL~~~~~I~~------~hi~EAl 93 (96)
T PF13335_consen 42 PLSSEAKKLLEQAAEK-------------LNLSARGYHRILRVARTIADLEGSERITR------EHIAEAL 93 (96)
T ss_pred CCCHHHHHHHHHHHHH-------------cCcCHHHHHHHHHHHHHHHhHcCCCCCCH------HHHHHHH
Confidence 4789999999888753 24899999999999999999999999995 5555555
No 200
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=30.38 E-value=73 Score=35.26 Aligned_cols=106 Identities=25% Similarity=0.218 Sum_probs=62.7
Q ss_pred ccccccccCCchHHHHHHHHHHHHHhccccCCCCCC---CceeEEEeeccccchhhhccceeeecccccccCCChHHHHH
Q psy14566 164 SSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSK---ATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVA 240 (532)
Q Consensus 164 ~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~---~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~ 240 (532)
++..+++.|..|+||+=+-+. +-++.+|..+---. +.+|-+ -+||-.+=-|=||-
T Consensus 245 Sd~tVLi~GETGtGKElvAra-IH~~S~R~~kPfV~~NCAAlPes--LlESELFGHeKGAF------------------- 302 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARA-IHQLSPRRDKPFVKLNCAALPES--LLESELFGHEKGAF------------------- 302 (550)
T ss_pred CCCeEEEecCCCccHHHHHHH-HHhhCcccCCCceeeeccccchH--HHHHHHhccccccc-------------------
Confidence 456689999999999655555 88888774321100 011111 11222222222221
Q ss_pred HHHHHHhcccccccCcchh-hhhcCCCceecccccccccc-------------cccccceeeecccceeecccCC
Q psy14566 241 IHEAMEQQTISIAKRPELA-LMLADNGVCCIDEFDNLSVT-------------SSKAGVRATLNARASILAAANP 301 (532)
Q Consensus 241 l~eaMeqq~isi~~~~~~~-~~~~~~~~~~~~e~~~~~~~-------------~~kagi~~~l~ar~svlAaanp 301 (532)
+=|..---| |-+||+|-.|+||+++|... +=.-|-.-+++--.-||||+|=
T Consensus 303 ----------TGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR 367 (550)
T COG3604 303 ----------TGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR 367 (550)
T ss_pred ----------ccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch
Confidence 111111123 77999999999999999522 1134677788888899999996
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=29.86 E-value=35 Score=40.43 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=29.1
Q ss_pred CCceeeeecccCCCcccchhHHHHHhhhhccc
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI 35 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMeqqtisi 35 (532)
+.||.++||++||.|..+..+..+|+.+.++-
T Consensus 670 p~~vLllDEieka~~~v~~~Ll~ile~g~l~d 701 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTD 701 (857)
T ss_pred CCCeEEEeehhhCCHHHHHHHHHHHhhCceec
Confidence 45899999999999999999999999998874
No 202
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=29.73 E-value=40 Score=34.63 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=21.3
Q ss_pred hhccceeeecccccccCCChHHHHHHHHHHHh
Q psy14566 216 SEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQ 247 (532)
Q Consensus 216 sEA~Akv~~~de~~vd~~d~~~~~~l~eaMeq 247 (532)
.|++.|+..++. .++|...-+.+|+..+|.
T Consensus 92 ~e~~~kv~ii~~--ad~mt~~AaNaLLK~LEE 121 (290)
T PRK05917 92 YESPYKIYIIHE--ADRMTLDAISAFLKVLED 121 (290)
T ss_pred cCCCceEEEEec--hhhcCHHHHHHHHHHhhc
Confidence 456677777777 777777777777777775
No 203
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.63 E-value=25 Score=39.19 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.3
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
+|+||+.++||++.|++.-+..|..+++.+.+.
T Consensus 305 ~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~ 337 (526)
T TIGR02329 305 AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVV 337 (526)
T ss_pred hcCCceEEecChHhCCHHHHHHHHHHHhcCcEE
Confidence 389999999999999999999999999888765
No 204
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=29.16 E-value=40 Score=35.25 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=11.9
Q ss_pred ccccCCchHHHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDMY 186 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y 186 (532)
.++.|.+|.||..+...+.
T Consensus 27 ~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 27 LLFKADSGLGTEQLIRALA 45 (325)
T ss_pred EEeECCCCCCHHHHHHHHH
Confidence 4566777777766666533
No 205
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=28.89 E-value=33 Score=39.71 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCC---------------------CCCCCceeE-EEeeccccchhh--hccceee
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGN---------------------SSSKATWRI-TTRQLESLIRLS--EAMAKME 223 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~---------------------~ss~~glt~-T~RqlESliRLs--EA~Akv~ 223 (532)
.++.|.||+||..+.+.+...|-..... ........+ .+|++-...... ++.-||.
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~ 122 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIY 122 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEE
Q ss_pred ecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCC
Q psy14566 224 CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIG 303 (532)
Q Consensus 224 ~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~ 303 (532)
.+|+ ++.|......+|+..||.-.-.+. -|+++.+|.
T Consensus 123 IIDE--a~~LT~~A~NALLKtLEEPP~~ti----------------------------------------fILaTte~~- 159 (725)
T PRK07133 123 IIDE--VHMLSKSAFNALLKTLEEPPKHVI----------------------------------------FILATTEVH- 159 (725)
T ss_pred EEEC--hhhCCHHHHHHHHHHhhcCCCceE----------------------------------------EEEEcCChh-
Q ss_pred CCCCCCCCccccccCCCcccccccEE
Q psy14566 304 GQYDRTKSLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 304 g~~~~~~~~~~ni~l~~~LLSRFDLi 329 (532)
.|+++|+||+-.+
T Consensus 160 -------------KLl~TI~SRcq~i 172 (725)
T PRK07133 160 -------------KIPLTILSRVQRF 172 (725)
T ss_pred -------------hhhHHHHhhceeE
No 206
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=28.75 E-value=73 Score=40.73 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=27.4
Q ss_pred CceeeeecccCCCcccchhHHHHHhhh-hccccccC
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAMEQQ-TISIAKGD 39 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMeqq-tisiaKag 39 (532)
|-...+||+.=.+++.-.-+..++|.| |+.++.-|
T Consensus 1294 GdfFLlDEIsLAdDSVLERLNSVLE~~RtL~l~E~g 1329 (4600)
T COG5271 1294 GDFFLLDEISLADDSVLERLNSVLESQRTLYLTETG 1329 (4600)
T ss_pred CCeeEeeeccccchHHHHHHHHhhcccceEEEeecC
Confidence 467789999998888888888899866 55666666
No 207
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=26.97 E-value=50 Score=29.38 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=44.6
Q ss_pred ccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHHHHH
Q psy14566 166 LFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAM 245 (532)
Q Consensus 166 ~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~eaM 245 (532)
..+++.|+||++|+.+-+. ......+. ...-..+...... ..++.+|.--..+.++ ++.++...+..|.+.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~-lh~~~~~~----~~~~~~~~~~~~~-~~~l~~a~~gtL~l~~--i~~L~~~~Q~~L~~~l 93 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARA-LHRYSGRA----NGPFIVIDCASLP-AELLEQAKGGTLYLKN--IDRLSPEAQRRLLDLL 93 (138)
T ss_dssp S-EEEECCTTSSHHHHHHC-CHHTTTTC----CS-CCCCCHHCTC-HHHHHHCTTSEEEEEC--GCCS-HHHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHH-HHhhcCcc----CCCeEEechhhCc-HHHHHHcCCCEEEECC--hHHCCHHHHHHHHHHH
Confidence 3368889999999887665 44433221 1111111112221 3445555555567888 9999999999998888
Q ss_pred Hhc
Q psy14566 246 EQQ 248 (532)
Q Consensus 246 eqq 248 (532)
+.+
T Consensus 94 ~~~ 96 (138)
T PF14532_consen 94 KRQ 96 (138)
T ss_dssp HHC
T ss_pred Hhc
Confidence 874
No 208
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=26.83 E-value=59 Score=35.29 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=14.9
Q ss_pred cccccccCCchHHHHHHHHH
Q psy14566 165 SLFPSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 165 ~~~pll~gdp~~~ksqlL~~ 184 (532)
....++.|.+|++|+.+-+.
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ 180 (469)
T PRK10923 161 SISVLINGESGTGKELVAHA 180 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHH
Confidence 44468889999999865444
No 209
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.81 E-value=87 Score=29.64 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.9
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR 192 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r 192 (532)
++.++|-||.+|+.++......|+.+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 37889999999999998855566654
No 210
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=26.06 E-value=1.6e+02 Score=31.68 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=16.7
Q ss_pred cccccccCCchHHHHHHHHHHHHHhc
Q psy14566 165 SLFPSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 165 ~~~pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.+..++.|.+|++|..+-+. .....
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~-ih~~~ 181 (463)
T TIGR01818 157 DITVLINGESGTGKELVARA-LHRHS 181 (463)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHhC
Confidence 44468889999999765444 44443
No 211
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=26.01 E-value=1.2e+02 Score=34.21 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHHHHHHhhhcccc-ccccCCchHHHHHHHHHHHHHh
Q psy14566 111 YQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLF-PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 111 ~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~-pll~gdp~~~ksqlL~~~y~~L 189 (532)
|.-+.+.+.| ..|..+-.++.+.+.+..+..-.+-.| .++.|.||+||..+.+.+...|
T Consensus 3 y~~l~~kyRP--------------------~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 3 YRGTATKRRP--------------------RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred cHHHHHHhCC--------------------CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Q ss_pred ccccCCCCCCCc------------------eeE-EEeeccccchhh--------hccceeeecccccccCCChHHHHHHH
Q psy14566 190 RQRDGNSSSKAT------------------WRI-TTRQLESLIRLS--------EAMAKMECLDEYEFDKMDPHDQVAIH 242 (532)
Q Consensus 190 r~r~g~~ss~~g------------------lt~-T~RqlESliRLs--------EA~Akv~~~de~~vd~~d~~~~~~l~ 242 (532)
-...+......| +-. .....+.+..+. ++.-++..+|+ ++.+......+|+
T Consensus 63 ~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDE--a~~Ls~~a~naLL 140 (563)
T PRK06647 63 NCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDE--VHMLSNSAFNALL 140 (563)
T ss_pred ccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEC--hhhcCHHHHHHHH
Q ss_pred HHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcc
Q psy14566 243 EAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPI 322 (532)
Q Consensus 243 eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~L 322 (532)
..||.-.-.+. -|+++.+|. .++++|
T Consensus 141 K~LEepp~~~v----------------------------------------fI~~tte~~--------------kL~~tI 166 (563)
T PRK06647 141 KTIEEPPPYIV----------------------------------------FIFATTEVH--------------KLPATI 166 (563)
T ss_pred HhhccCCCCEE----------------------------------------EEEecCChH--------------HhHHHH
Q ss_pred cccccEE
Q psy14566 323 MSRFDLF 329 (532)
Q Consensus 323 LSRFDLi 329 (532)
.||+-.+
T Consensus 167 ~SRc~~~ 173 (563)
T PRK06647 167 KSRCQHF 173 (563)
T ss_pred HHhceEE
No 212
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=25.60 E-value=46 Score=29.63 Aligned_cols=28 Identities=18% Similarity=0.471 Sum_probs=24.9
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhh
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQ 30 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeq 30 (532)
|.+|+.+|+|+|.+++..+..|...+++
T Consensus 68 a~~gtL~l~~i~~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 68 AKGGTLYLKNIDRLSPEAQRRLLDLLKR 95 (138)
T ss_dssp CTTSEEEEECGCCS-HHHHHHHHHHHHH
T ss_pred cCCCEEEECChHHCCHHHHHHHHHHHHh
Confidence 4789999999999999999999999876
No 213
>PLN03025 replication factor C subunit; Provisional
Probab=25.59 E-value=36 Score=35.13 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.5
Q ss_pred CceeeeecccCCCcccchhHHHHHh
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAME 29 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMe 29 (532)
..+++|||+|.|....+.+|...||
T Consensus 100 ~kviiiDE~d~lt~~aq~aL~~~lE 124 (319)
T PLN03025 100 HKIVILDEADSMTSGAQQALRRTME 124 (319)
T ss_pred eEEEEEechhhcCHHHHHHHHHHHh
Confidence 3599999999999999999988887
No 214
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=25.54 E-value=59 Score=32.21 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=19.5
Q ss_pred CCceeeeecccCCCcccchhHHHHHh
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAME 29 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMe 29 (532)
.|-.+|.|||+.++.+.-++|.+-+.
T Consensus 84 ~GaW~cfdefnrl~~~vLS~i~~~i~ 109 (231)
T PF12774_consen 84 SGAWLCFDEFNRLSEEVLSVISQQIQ 109 (231)
T ss_dssp HT-EEEEETCCCSSHHHHHHHHHHHH
T ss_pred cCchhhhhhhhhhhHHHHHHHHHHHH
Confidence 35679999999999877777765543
No 215
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=25.43 E-value=1.3e+02 Score=33.64 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=45.3
Q ss_pred cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHhhc
Q psy14566 455 IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKK 531 (532)
Q Consensus 455 ~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~~~ 531 (532)
--|-|+.+|-..|.+|-..+ +. +-++.-...|..|+|-|-+.|+..=.+.|+ +.+|.+||..+
T Consensus 444 ~L~~~~~~Av~~li~~~~R~---~q-----~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~------~~~V~~Ai~~r 506 (509)
T PF13654_consen 444 GLPPFDRSAVARLIEYSARL---DQ-----DKLSLRFSWLADLLREANYWARKEGAKVIT------AEHVEQAIEER 506 (509)
T ss_dssp SS--BBHHHHHHHHHHHHHC---C------SEEE--HHHHHHHHHHHHHHHHHCT-SSB-------HHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHHHH---hC-----CEeCCCHHHHHHHHHHHHHHHHHhCCCccC------HHHHHHHHHcc
Confidence 34788999999999998876 11 126778889999999999999998888888 57777777654
No 216
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=25.42 E-value=42 Score=32.37 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=38.6
Q ss_pred CceeeeecccCCCcccchhHHHHHhhhhcccccc-Ccccccccccccccccccccceeeee
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKG-DMNVEGVRGLKSLGVRDLNYRLAFLA 64 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKa-gi~~~gv~~l~~~~v~tLnaRtsILA 64 (532)
.-++++|||+.++..+...|-..+-..++.+-++ |.. ..+++-+++++|
T Consensus 96 ~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~-----------~~~~~R~~~fig 145 (198)
T PF05272_consen 96 KWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRD-----------PEEFPRRAVFIG 145 (198)
T ss_pred hHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCc-----------ceeeceeEEEEe
Confidence 3578999999999999988999988888887665 332 356777777787
No 217
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=25.19 E-value=1.2e+02 Score=35.45 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred cCCCCCCchhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeE-EEeeccccchhhhccc
Q psy14566 142 LFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRI-TTRQLESLIRLSEAMA 220 (532)
Q Consensus 142 l~gg~~~~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~-T~RqlESliRLsEA~A 220 (532)
+-+.+.....++.-|.-..+-.++- |.|+|+||.+|..+ +.-|.+|-..+.--..|.- ++..|. +=.+.|||
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNN-PvLiGEpGVGKTAI----vEGLA~rIv~g~VP~~L~~~~i~sLD--~g~LvAGa 241 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNN-PVLVGEPGVGKTAI----VEGLAQRIVNGDVPESLKDKRIYSLD--LGSLVAGA 241 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCC-CeEecCCCCCHHHH----HHHHHHHHhcCCCCHHHcCCEEEEec--HHHHhccc
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceeccccccc
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNL 276 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~ 276 (532)
+ +--.=+.-...+....++.. .|. .||||+-.+
T Consensus 242 k--------yRGeFEeRlk~vl~ev~~~~-~vI--------------LFIDEiHti 274 (786)
T COG0542 242 K--------YRGEFEERLKAVLKEVEKSK-NVI--------------LFIDEIHTI 274 (786)
T ss_pred c--------ccCcHHHHHHHHHHHHhcCC-CeE--------------EEEechhhh
No 218
>PF05729 NACHT: NACHT domain
Probab=24.65 E-value=43 Score=29.91 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.0
Q ss_pred ccccCCchHHHHHHHHHHHHHhccc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQR 192 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r 192 (532)
.+++|+||.|||.+++.++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhc
Confidence 5678999999999999977777654
No 219
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=24.59 E-value=28 Score=37.78 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=30.1
Q ss_pred Hhhhhhhhhh--ccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHH
Q psy14566 444 LLERKTVVEK--VIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIR 499 (532)
Q Consensus 444 ll~kyi~yar--~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIR 499 (532)
|+++|..+=+ .+.=.+|++|.+.|.+.=..+=... -.+-+|-|-|++-
T Consensus 351 LikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~--------~~iGAR~LrtI~E 400 (443)
T PRK05201 351 LIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKT--------ENIGARRLHTVME 400 (443)
T ss_pred HHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccc--------cccchhhHHHHHH
Confidence 6666654333 3788899999999987755431110 1256777776653
No 220
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.37 E-value=34 Score=36.76 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=22.0
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccc
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIA 253 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~ 253 (532)
-+.+.|| |-..+...+.+++-.||..+|...
T Consensus 106 tiLflDE--IHRfnK~QQD~lLp~vE~G~iilI 136 (436)
T COG2256 106 TILFLDE--IHRFNKAQQDALLPHVENGTIILI 136 (436)
T ss_pred eEEEEeh--hhhcChhhhhhhhhhhcCCeEEEE
Confidence 3467777 777777777777788887766653
No 221
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=24.01 E-value=29 Score=37.67 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=30.6
Q ss_pred Hhhhhhhhhh--ccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHH
Q psy14566 444 LLERKTVVEK--VIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIR 499 (532)
Q Consensus 444 ll~kyi~yar--~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIR 499 (532)
|+++|..+=+ .+.=.+|++|.+.|.+.=..+=... -.+-+|-|-|++-
T Consensus 349 LikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~--------~~iGAR~LrtilE 398 (441)
T TIGR00390 349 LIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKT--------ENIGARRLHTVLE 398 (441)
T ss_pred HHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccc--------cccchhhHHHHHH
Confidence 6666654443 3788899999999988754431111 1356777777754
No 222
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.99 E-value=2.1e+02 Score=30.16 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.1
Q ss_pred ccceeeecccccccCCChHHHHHHHHHHHh
Q psy14566 218 AMAKMECLDEYEFDKMDPHDQVAIHEAMEQ 247 (532)
Q Consensus 218 A~Akv~~~de~~vd~~d~~~~~~l~eaMeq 247 (532)
+.-++..+|| ++.++.....+++..||.
T Consensus 118 ~~~kviIIDE--a~~l~~~a~naLLk~lEe 145 (363)
T PRK14961 118 SRFKVYLIDE--VHMLSRHSFNALLKTLEE 145 (363)
T ss_pred CCceEEEEEC--hhhcCHHHHHHHHHHHhc
Confidence 3456889999 999988767778888776
No 223
>KOG2648|consensus
Probab=23.53 E-value=24 Score=38.08 Aligned_cols=15 Identities=47% Similarity=1.125 Sum_probs=11.6
Q ss_pred CcCCC--ceeeeecccC
Q psy14566 1 MLADN--GVCCIDEFDK 15 (532)
Q Consensus 1 vlad~--GvccIDEfDk 15 (532)
||||= |-||||||--
T Consensus 82 VLaDttYGsCCVDevaA 98 (453)
T KOG2648|consen 82 VLGDTTYGSCCVDEVAA 98 (453)
T ss_pred EEecCcccccccchHHH
Confidence 46665 8999999754
No 224
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=23.49 E-value=53 Score=32.75 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=14.6
Q ss_pred CCCceeeeecccCCCcc
Q psy14566 3 ADNGVCCIDEFDKMDPH 19 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~ 19 (532)
|.+||.+|||+|.+.++
T Consensus 104 a~~~VL~IDE~~~L~~~ 120 (261)
T TIGR02881 104 ALGGVLFIDEAYSLARG 120 (261)
T ss_pred ccCCEEEEechhhhccC
Confidence 56899999999999753
No 225
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=22.99 E-value=43 Score=30.66 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred ccccCCchHHHHHHHHHHHHHhccc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQR 192 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r 192 (532)
.+++|.||+|||.+++.++..+..+
T Consensus 27 ~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6888999999999999867666643
No 226
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=22.57 E-value=64 Score=34.27 Aligned_cols=22 Identities=36% Similarity=0.232 Sum_probs=16.1
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.+|.||..+...+...|
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999988776644444
No 227
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=21.95 E-value=47 Score=30.71 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=23.4
Q ss_pred CceeeeecccCCCcccchhHHHHHhhh
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAMEQQ 31 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMeqq 31 (532)
.=|+.||++|+|++.-..+|...||.-
T Consensus 103 ~KviiI~~ad~l~~~a~NaLLK~LEep 129 (162)
T PF13177_consen 103 YKVIIIDEADKLTEEAQNALLKTLEEP 129 (162)
T ss_dssp SEEEEEETGGGS-HHHHHHHHHHHHST
T ss_pred ceEEEeehHhhhhHHHHHHHHHHhcCC
Confidence 348999999999999999999999865
No 228
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=21.89 E-value=66 Score=38.36 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred cccCCchHHHHHHHHHHHHHhccccCCCCCC-------CceeE-EEeec--------------------cccchhhhcc-
Q psy14566 169 SIHGNEQIKKAKLLVDMYTQLRQRDGNSSSK-------ATWRI-TTRQL--------------------ESLIRLSEAM- 219 (532)
Q Consensus 169 ll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~-------~glt~-T~Rql--------------------ESliRLsEA~- 219 (532)
++.|.||+||+...+++..+|..+....... .+... +..+. +.+.++.+..
T Consensus 785 YIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~ 864 (1164)
T PTZ00112 785 YISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK 864 (1164)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh
Q ss_pred -----ceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccce
Q psy14566 220 -----AKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARAS 294 (532)
Q Consensus 220 -----Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~s 294 (532)
..+.+.|| ||.+.......|+..++..... .++.+
T Consensus 865 k~~r~v~IIILDE--ID~L~kK~QDVLYnLFR~~~~s--------------------------------------~SKLi 904 (1164)
T PTZ00112 865 KDNRNVSILIIDE--IDYLITKTQKVLFTLFDWPTKI--------------------------------------NSKLV 904 (1164)
T ss_pred cccccceEEEeeh--HhhhCccHHHHHHHHHHHhhcc--------------------------------------CCeEE
Q ss_pred eecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchh
Q psy14566 295 ILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEIL 340 (532)
Q Consensus 295 vlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~ 340 (532)
|||.+|+. .+.+ .|.+.+.|||-.-.+.....+.+.
T Consensus 905 LIGISNdl--------DLpe--rLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 905 LIAISNTM--------DLPE--RLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred EEEecCch--------hcch--hhhhhhhhccccccccCCCCCHHH
No 229
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.62 E-value=85 Score=35.81 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc------------------cCCCCCCCceeE-EEeeccccchhh--------hcc
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR------------------DGNSSSKATWRI-TTRQLESLIRLS--------EAM 219 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r------------------~g~~ss~~glt~-T~RqlESliRLs--------EA~ 219 (532)
..++.|.||++|+.+.+.+...|-.. .|....-.-+.. .-+..+.+..+. ++.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~ 119 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGR 119 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCC
Q ss_pred ceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeeccc
Q psy14566 220 AKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAA 299 (532)
Q Consensus 220 Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaa 299 (532)
-++..+|| ++.++.....+|...||...-.+. -|+++.
T Consensus 120 ~kVIIIDE--ad~Lt~~a~naLLk~LEEP~~~~i----------------------------------------fILaTt 157 (624)
T PRK14959 120 YKVFIIDE--AHMLTREAFNALLKTLEEPPARVT----------------------------------------FVLATT 157 (624)
T ss_pred ceEEEEEC--hHhCCHHHHHHHHHHhhccCCCEE----------------------------------------EEEecC
Q ss_pred CCCCCCCCCCCCccccccCCCcccccccEE
Q psy14566 300 NPIGGQYDRTKSLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 300 np~~g~~~~~~~~~~ni~l~~~LLSRFDLi 329 (532)
+|. .++.+|+||+-.|
T Consensus 158 ~~~--------------kll~TI~SRcq~i 173 (624)
T PRK14959 158 EPH--------------KFPVTIVSRCQHF 173 (624)
T ss_pred Chh--------------hhhHHHHhhhhcc
No 230
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=21.38 E-value=6.2e+02 Score=29.02 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=18.3
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.+|.|.+|+||+.|+..+..++.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 35679999999999998665554
No 231
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=21.37 E-value=1.4e+02 Score=21.11 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=17.2
Q ss_pred cccChhHHHHHHHHHHHHhhc
Q psy14566 457 RLIYHGAAKLLVDMYTQLRQR 477 (532)
Q Consensus 457 P~ls~eA~~~I~~~Y~~lR~~ 477 (532)
+.+...|.++|.+||-.||-.
T Consensus 3 ~evd~rAe~FI~~f~~qlrlq 23 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQLRLQ 23 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999865
No 232
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=21.36 E-value=1.9e+02 Score=29.10 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccch-------------hhhccceeeecccccccCC
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIR-------------LSEAMAKMECLDEYEFDKM 233 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliR-------------LsEA~Akv~~~de~~vd~~ 233 (532)
+.++.|.||+||+.+++.+..++ .+.+.....+....-+...... ..++.-++.++|+ ++.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe--~~~l 114 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAREL---YGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDE--ADNL 114 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH---cCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeC--cccC
Q ss_pred ChHHHHHHHHHHHh
Q psy14566 234 DPHDQVAIHEAMEQ 247 (532)
Q Consensus 234 d~~~~~~l~eaMeq 247 (532)
.......|...|++
T Consensus 115 ~~~~~~~L~~~le~ 128 (319)
T PRK00440 115 TSDAQQALRRTMEM 128 (319)
T ss_pred CHHHHHHHHHHHhc
No 233
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=21.35 E-value=52 Score=27.78 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.7
Q ss_pred ccccCCchHHHHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDMYT 187 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~ 187 (532)
++++|+++.||+.||+. +.
T Consensus 2 I~V~G~~g~GKTsLi~~-l~ 20 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRR-LC 20 (119)
T ss_dssp EEEECSTTSSHHHHHHH-HH
T ss_pred EEEECcCCCCHHHHHHH-Hh
Confidence 67899999999999998 44
No 234
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=21.26 E-value=48 Score=33.64 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=26.5
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
..+++.+|||++.+++.....+..+|+...+.
T Consensus 80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~ 111 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLD 111 (305)
T ss_pred ccCCEEEEehHhhhCHHHHHHhhHHHhhhhee
Confidence 45689999999999998888888999876543
No 235
>PRK13342 recombination factor protein RarA; Reviewed
Probab=20.85 E-value=46 Score=35.79 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.7
Q ss_pred CCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.+++.+|||+|.|++..+.+|...||.+++.
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~~~ii 122 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTIT 122 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhcCcEE
Confidence 5679999999999998898999999876654
No 236
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=20.76 E-value=64 Score=34.24 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=19.6
Q ss_pred ccccCCchHHHHHHHHHHHHHhcc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQ 191 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~ 191 (532)
.+|.|.+|.||+=|+--||..+..
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCc
Confidence 578899999999888887877654
No 237
>KOG0738|consensus
Probab=20.49 E-value=63 Score=34.71 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=23.0
Q ss_pred cccceeeecc--cceeecccCCCCCCCCCCCCccccccCCCccccccc
Q psy14566 282 KAGVRATLNA--RASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFD 327 (532)
Q Consensus 282 kagi~~~l~a--r~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFD 327 (532)
.-|+..+++- +.-||||+|--+ .|..+|+-||-
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PW-------------diDEAlrRRlE 374 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPW-------------DIDEALRRRLE 374 (491)
T ss_pred hhccccccccceeEEEEeccCCCc-------------chHHHHHHHHh
Confidence 4566666654 688999999753 46667777774
No 238
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.29 E-value=2.1e+02 Score=32.71 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhhhhhhccccCCCCCCchhhHhHHHHHHhhhccccc-cccCCchHHHHHHHHHHHHHhccccCCCCCCC----------
Q psy14566 132 RNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFP-SIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKA---------- 200 (532)
Q Consensus 132 i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~p-ll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~---------- 200 (532)
..+..+.--.-|..+-.++.+.+.+..+..-.+-.|. ++.|.+|+||+.+.+-+...|--....+..+.
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Q ss_pred -------------ceeE-EEeeccccchhhhc--------cceeeecccccccCCChHHHHHHHHHHHhcccccccCcch
Q psy14566 201 -------------TWRI-TTRQLESLIRLSEA--------MAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPEL 258 (532)
Q Consensus 201 -------------glt~-T~RqlESliRLsEA--------~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~ 258 (532)
.+.+ .-+..+.+..+.+. +-|+.++|| ++.|......+|+..||.---.+.
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDE--vh~Ls~~a~NaLLKtLEEPP~~~~----- 156 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDE--VHMLTNTAFNAMLKTLEEPPEYLK----- 156 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEC--hhhCCHHHHHHHHHhcccCCCCeE-----
Q ss_pred hhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEE
Q psy14566 259 ALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFV 331 (532)
Q Consensus 259 ~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~ 331 (532)
-|+++.+|. +++++++||.-.+-+
T Consensus 157 -----------------------------------fIL~Ttd~~--------------kil~TIlSRc~~~~f 180 (618)
T PRK14951 157 -----------------------------------FVLATTDPQ--------------KVPVTVLSRCLQFNL 180 (618)
T ss_pred -----------------------------------EEEEECCch--------------hhhHHHHHhceeeec
No 239
>PRK08181 transposase; Validated
Probab=20.25 E-value=1.1e+02 Score=30.99 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=41.1
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccc----------hhhh--ccceeeecccccccCCC
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLI----------RLSE--AMAKMECLDEYEFDKMD 234 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESli----------RLsE--A~Akv~~~de~~vd~~d 234 (532)
..++.|.||+||+.+....-.++..+ |. ..+-++..++-..+ .+.+ ..+-+.++|+++....+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~-g~----~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIEN-GW----RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKD 182 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHc-CC----ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCC
Confidence 37899999999999988744444322 21 11122322221111 1111 12345777885555556
Q ss_pred hHHHHHHHHHHHh
Q psy14566 235 PHDQVAIHEAMEQ 247 (532)
Q Consensus 235 ~~~~~~l~eaMeq 247 (532)
...+..|++.+..
T Consensus 183 ~~~~~~Lf~lin~ 195 (269)
T PRK08181 183 QAETSVLFELISA 195 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 6566667776654
Done!