Query psy14566
Match_columns 532
No_of_seqs 234 out of 1794
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:08:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 100.0 3.1E-46 1.1E-50 395.2 13.4 282 93-526 188-484 (506)
2 3f9v_A Minichromosome maintena 100.0 1.6E-42 5.6E-47 383.9 7.6 364 7-526 209-588 (595)
3 3f8t_A Predicted ATPase involv 99.8 2.9E-23 9.8E-28 220.0 -2.6 195 1-259 297-497 (506)
4 3f9v_A Minichromosome maintena 99.8 2.7E-20 9.1E-25 206.1 -2.8 194 2-247 389-593 (595)
5 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 4.5E-12 1.5E-16 137.2 14.2 256 109-521 11-282 (500)
6 2r44_A Uncharacterized protein 99.3 1.1E-11 3.9E-16 126.5 14.1 262 109-519 16-291 (331)
7 1g8p_A Magnesium-chelatase 38 99.2 2.7E-10 9.4E-15 116.4 14.8 173 218-520 143-317 (350)
8 3k1j_A LON protease, ATP-depen 98.8 1.2E-08 4.1E-13 113.0 9.3 62 455-522 311-372 (604)
9 1ofh_A ATP-dependent HSL prote 97.8 0.00019 6.3E-09 71.3 12.7 67 455-529 231-297 (310)
10 2bjv_A PSP operon transcriptio 97.5 0.00029 1E-08 68.9 9.9 44 457-518 207-250 (265)
11 3pfi_A Holliday junction ATP-d 97.5 0.00052 1.8E-08 69.4 11.4 122 167-334 57-183 (338)
12 4fcw_A Chaperone protein CLPB; 97.5 0.00038 1.3E-08 69.3 10.2 81 221-333 121-214 (311)
13 1ojl_A Transcriptional regulat 97.5 0.00063 2.2E-08 68.5 11.5 45 456-518 201-245 (304)
14 3m6a_A ATP-dependent protease 97.2 0.00019 6.4E-09 78.3 3.9 40 291-345 223-262 (543)
15 1um8_A ATP-dependent CLP prote 97.1 0.0013 4.5E-08 67.8 9.6 83 167-253 74-183 (376)
16 3syl_A Protein CBBX; photosynt 97.1 0.00061 2.1E-08 67.8 6.3 48 455-510 220-267 (309)
17 1hqc_A RUVB; extended AAA-ATPa 96.8 0.011 3.7E-07 59.0 12.7 124 167-332 40-165 (324)
18 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.00053 1.8E-08 74.0 0.8 47 4-64 109-155 (500)
19 1r6b_X CLPA protein; AAA+, N-t 96.4 0.004 1.4E-07 70.3 7.2 86 221-339 559-656 (758)
20 2r44_A Uncharacterized protein 96.3 0.00069 2.4E-08 68.4 0.5 52 5-74 110-161 (331)
21 3k1j_A LON protease, ATP-depen 96.0 0.002 6.7E-08 71.1 1.9 35 2-36 199-233 (604)
22 3h4m_A Proteasome-activating n 95.8 0.0063 2.2E-07 59.7 4.7 30 489-518 222-251 (285)
23 3b9p_A CG5977-PA, isoform A; A 95.4 0.067 2.3E-06 52.6 10.4 56 264-332 113-186 (297)
24 3vfd_A Spastin; ATPase, microt 95.2 0.035 1.2E-06 57.4 7.9 60 265-338 208-284 (389)
25 1g8p_A Magnesium-chelatase 38 95.2 0.0088 3E-07 60.3 3.1 56 3-74 143-198 (350)
26 3pxi_A Negative regulator of g 95.0 0.0042 1.4E-07 70.2 0.1 127 167-331 523-658 (758)
27 3d8b_A Fidgetin-like protein 1 94.5 0.03 1E-06 57.3 5.1 61 264-338 176-253 (357)
28 2p65_A Hypothetical protein PF 93.8 0.021 7.3E-07 51.3 2.0 57 266-330 117-182 (187)
29 3t15_A Ribulose bisphosphate c 93.7 0.056 1.9E-06 53.7 5.0 22 168-189 39-60 (293)
30 2qp9_X Vacuolar protein sortin 93.6 0.039 1.3E-06 56.5 3.8 62 264-339 143-220 (355)
31 3pvs_A Replication-associated 93.6 0.04 1.4E-06 58.4 3.9 53 263-329 105-160 (447)
32 2zan_A Vacuolar protein sortin 93.5 0.028 9.5E-07 59.5 2.6 62 264-339 227-304 (444)
33 1ny5_A Transcriptional regulat 93.5 0.17 5.7E-06 52.5 8.4 51 457-531 337-387 (387)
34 4akg_A Glutathione S-transfera 93.3 0.57 2E-05 59.7 14.0 127 152-326 632-772 (2695)
35 3eie_A Vacuolar protein sortin 93.3 0.062 2.1E-06 54.0 4.5 67 264-344 110-192 (322)
36 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.14 4.8E-06 51.6 7.1 61 265-339 106-182 (322)
37 2chg_A Replication factor C sm 92.9 0.72 2.5E-05 41.9 11.1 22 168-189 41-62 (226)
38 3uk6_A RUVB-like 2; hexameric 92.8 0.22 7.5E-06 50.3 8.0 48 456-518 276-323 (368)
39 1jbk_A CLPB protein; beta barr 92.3 0.037 1.3E-06 49.6 1.2 62 267-338 118-187 (195)
40 3hws_A ATP-dependent CLP prote 92.1 0.044 1.5E-06 55.9 1.6 18 167-184 53-70 (363)
41 3pxg_A Negative regulator of g 92.1 0.66 2.2E-05 49.2 10.8 38 292-339 291-328 (468)
42 4akg_A Glutathione S-transfera 92.0 0.094 3.2E-06 66.7 4.6 45 282-339 1375-1421(2695)
43 1lv7_A FTSH; alpha/beta domain 92.0 0.47 1.6E-05 45.5 8.7 36 489-530 216-251 (257)
44 1ltl_A DNA replication initiat 90.7 0.037 1.3E-06 54.9 -0.7 75 8-115 203-278 (279)
45 3bos_A Putative DNA replicatio 90.3 1.5 5.2E-05 40.6 10.3 23 168-190 55-77 (242)
46 2r62_A Cell division protease 89.8 0.21 7.3E-06 48.1 4.0 22 168-189 47-68 (268)
47 2qz4_A Paraplegin; AAA+, SPG7, 89.3 0.13 4.5E-06 49.2 2.0 30 489-518 213-242 (262)
48 3n70_A Transport activator; si 88.6 0.25 8.7E-06 43.2 3.2 24 165-189 24-47 (145)
49 1in4_A RUVB, holliday junction 88.4 3.3 0.00011 41.4 11.8 23 167-189 53-75 (334)
50 1qvr_A CLPB protein; coiled co 87.7 0.15 5.3E-06 58.2 1.5 23 167-189 590-612 (854)
51 1ojl_A Transcriptional regulat 86.8 0.31 1.1E-05 48.6 2.9 32 3-34 95-126 (304)
52 2bjv_A PSP operon transcriptio 86.6 0.31 1.1E-05 47.0 2.7 32 3-34 99-130 (265)
53 1um8_A ATP-dependent CLP prote 84.8 0.35 1.2E-05 49.3 2.2 37 3-39 136-186 (376)
54 1sxj_D Activator 1 41 kDa subu 84.3 0.23 7.8E-06 49.7 0.5 22 168-189 61-82 (353)
55 4b4t_L 26S protease subunit RP 83.9 2.7 9.1E-05 44.2 8.5 58 267-338 277-354 (437)
56 2c9o_A RUVB-like 1; hexameric 83.6 2.1 7.2E-05 44.9 7.7 49 458-521 385-433 (456)
57 1g41_A Heat shock protein HSLU 83.3 0.75 2.6E-05 48.5 4.0 38 454-499 364-401 (444)
58 2ce7_A Cell division protein F 82.2 1.4 4.9E-05 46.8 5.7 60 266-339 110-189 (476)
59 4b4t_I 26S protease regulatory 82.1 2.4 8.1E-05 44.5 7.2 59 267-339 278-356 (437)
60 3hu3_A Transitional endoplasmi 82.1 0.96 3.3E-05 48.3 4.3 59 266-338 299-374 (489)
61 3u61_B DNA polymerase accessor 82.0 4.9 0.00017 39.6 9.3 60 264-339 105-168 (324)
62 3vkg_A Dynein heavy chain, cyt 81.4 0.86 2.9E-05 58.8 4.1 50 282-344 1413-1464(3245)
63 3co5_A Putative two-component 80.4 0.7 2.4E-05 40.3 2.1 30 3-32 74-103 (143)
64 4b4t_H 26S protease regulatory 80.1 3.6 0.00012 43.6 7.7 58 267-338 305-382 (467)
65 3cf2_A TER ATPase, transitiona 80.0 2.3 7.9E-05 48.2 6.7 60 266-339 299-375 (806)
66 1ny5_A Transcriptional regulat 79.9 0.81 2.8E-05 47.2 2.7 33 2-34 229-261 (387)
67 1r6b_X CLPA protein; AAA+, N-t 79.3 0.8 2.7E-05 51.4 2.6 35 3-37 556-590 (758)
68 1sxj_C Activator 1 40 kDa subu 79.1 0.69 2.4E-05 46.4 1.9 24 167-190 48-71 (340)
69 2z4s_A Chromosomal replication 78.8 2.5 8.4E-05 44.3 6.1 24 167-190 132-155 (440)
70 2chq_A Replication factor C sm 78.1 0.38 1.3E-05 47.2 -0.5 53 263-328 101-155 (319)
71 1iqp_A RFCS; clamp loader, ext 77.4 0.86 3E-05 44.7 1.9 23 167-189 48-70 (327)
72 4fcw_A Chaperone protein CLPB; 76.6 1.2 3.9E-05 43.7 2.6 34 3-36 118-151 (311)
73 3n70_A Transport activator; si 76.0 0.81 2.8E-05 39.9 1.1 26 3-28 75-100 (145)
74 4b4t_M 26S protease regulatory 75.1 1 3.6E-05 47.3 1.9 35 291-339 319-355 (434)
75 3pfi_A Holliday junction ATP-d 75.0 1.1 3.6E-05 44.7 1.9 35 2-36 104-138 (338)
76 3co5_A Putative two-component 73.4 1.3 4.4E-05 38.6 1.8 19 166-184 28-46 (143)
77 4b4t_K 26S protease regulatory 73.1 0.95 3.2E-05 47.6 1.0 35 292-339 311-347 (428)
78 3dzd_A Transcriptional regulat 73.1 1.6 5.4E-05 44.7 2.6 33 2-34 220-252 (368)
79 1sxj_B Activator 1 37 kDa subu 72.9 2.1 7.3E-05 41.7 3.5 22 168-189 45-66 (323)
80 1d2n_A N-ethylmaleimide-sensit 70.6 0.39 1.3E-05 46.6 -2.6 18 168-185 67-84 (272)
81 4b4t_J 26S protease regulatory 70.6 1.2 4.2E-05 46.3 1.1 34 291-338 286-321 (405)
82 1ypw_A Transitional endoplasmi 69.0 1.2 4.2E-05 50.5 0.8 22 167-189 513-534 (806)
83 1njg_A DNA polymerase III subu 67.2 3.9 0.00013 37.3 3.8 108 168-331 48-182 (250)
84 2klq_A CBD, P105MCM, DNA repli 67.1 2.8 9.6E-05 35.7 2.4 29 421-449 36-64 (114)
85 1a5t_A Delta prime, HOLB; zinc 65.9 2.6 8.8E-05 42.2 2.3 23 168-190 27-49 (334)
86 1hqc_A RUVB; extended AAA-ATPa 64.3 2.6 8.8E-05 41.4 1.9 34 2-35 88-121 (324)
87 3pxi_A Negative regulator of g 60.8 4 0.00014 45.7 2.9 35 3-37 578-612 (758)
88 3te6_A Regulatory protein SIR3 60.8 14 0.00046 37.1 6.5 24 168-191 48-71 (318)
89 3dzd_A Transcriptional regulat 60.4 3.4 0.00012 42.1 2.1 36 456-506 327-362 (368)
90 1l8q_A Chromosomal replication 57.2 7.2 0.00025 38.4 3.8 23 168-190 40-62 (324)
91 1jr3_A DNA polymerase III subu 56.4 19 0.00065 35.6 6.9 23 168-190 41-63 (373)
92 3hws_A ATP-dependent CLP prote 54.7 2.1 7.1E-05 43.3 -0.7 35 3-37 115-163 (363)
93 1sxj_E Activator 1 40 kDa subu 53.9 29 0.001 34.1 7.7 116 167-340 38-197 (354)
94 1ofh_A ATP-dependent HSL prote 51.0 5.4 0.00018 38.6 1.6 31 4-34 116-158 (310)
95 1qvr_A CLPB protein; coiled co 50.5 7.9 0.00027 44.0 3.1 33 3-35 659-691 (854)
96 3pvs_A Replication-associated 48.9 6.3 0.00021 41.4 1.9 33 3-35 105-137 (447)
97 2dhr_A FTSH; AAA+ protein, hex 48.8 10 0.00035 40.4 3.5 17 168-184 67-83 (499)
98 3vkg_A Dynein heavy chain, cyt 46.1 15 0.00052 47.6 5.0 44 284-338 699-742 (3245)
99 1ypw_A Transitional endoplasmi 44.0 30 0.001 39.1 6.5 21 167-188 240-260 (806)
100 2gno_A DNA polymerase III, gam 41.2 10 0.00035 37.5 1.9 114 167-339 20-143 (305)
101 3cf0_A Transitional endoplasmi 40.6 5.9 0.0002 38.8 0.1 61 265-339 109-189 (301)
102 3cf2_A TER ATPase, transitiona 38.1 36 0.0012 38.5 5.9 61 266-340 572-652 (806)
103 1g41_A Heat shock protein HSLU 36.3 11 0.00038 39.6 1.3 32 4-35 250-293 (444)
104 1sxj_D Activator 1 41 kDa subu 35.7 13 0.00045 36.5 1.7 28 4-31 133-160 (353)
105 2chg_A Replication factor C sm 34.7 16 0.00054 32.7 2.0 28 3-30 101-128 (226)
106 1iqp_A RFCS; clamp loader, ext 34.6 15 0.00052 35.5 2.0 29 3-31 109-137 (327)
107 3m6a_A ATP-dependent protease 34.0 21 0.00071 38.3 3.1 30 4-33 175-208 (543)
108 3syl_A Protein CBBX; photosynt 33.0 14 0.00049 35.6 1.5 29 3-31 129-166 (309)
109 2kjq_A DNAA-related protein; s 32.7 64 0.0022 27.8 5.6 71 168-247 39-109 (149)
110 3trk_A Nonstructural polyprote 29.4 22 0.00075 34.8 1.9 26 311-336 196-222 (324)
111 2c9o_A RUVB-like 1; hexameric 24.3 20 0.00069 37.3 0.8 26 6-31 297-322 (456)
112 3u61_B DNA polymerase accessor 21.3 31 0.0011 33.6 1.4 28 4-31 105-133 (324)
113 3bos_A Putative DNA replicatio 21.2 41 0.0014 30.5 2.2 28 3-30 103-132 (242)
114 3uk6_A RUVB-like 2; hexameric 21.1 26 0.00088 34.7 0.8 27 6-32 191-217 (368)
115 4dkx_A RAS-related protein RAB 20.3 35 0.0012 31.6 1.5 20 167-187 15-34 (216)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=3.1e-46 Score=395.17 Aligned_cols=282 Identities=21% Similarity=0.234 Sum_probs=226.3
Q ss_pred CCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHHHHHHhhhccccccccC
Q psy14566 93 MTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG 172 (532)
Q Consensus 93 ~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~pll~g 172 (532)
++..+.+.|..+.++ ++++.+++|++| |+|++.+|+++.+ .++||..+ .|+++| .||+|
T Consensus 188 ~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll------~L~GG~~k---~rgdih----------VLL~G 246 (506)
T 3f8t_A 188 PDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLAL------QLFSCVGK---NSERLH----------VLLAG 246 (506)
T ss_dssp CCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHH------HHTTCCSS---GGGCCC----------EEEES
T ss_pred CCHHHHHHHHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHH------HHcCCccc---cCCcee----------EEEEC
Confidence 445566677778888 999999999999 9999999999999 99999765 677777 99999
Q ss_pred CchHHHHHHHHHHH-HHhccc----cCCCCCCCceeEEEeeccccchhhhcccee------eecccccccCCChHHHHHH
Q psy14566 173 NEQIKKAKLLVDMY-TQLRQR----DGNSSSKATWRITTRQLESLIRLSEAMAKM------ECLDEYEFDKMDPHDQVAI 241 (532)
Q Consensus 173 dp~~~ksqlL~~~y-~~Lr~r----~g~~ss~~glt~T~RqlESliRLsEA~Akv------~~~de~~vd~~d~~~~~~l 241 (532)
+||+ |+++++. . .++.|| +|.+++..++++++|.. ++ |..++|+.+ +|.|| +++++...+.+|
T Consensus 247 ~PGt-KS~Lar~-i~~~i~pR~~ft~g~~ss~~gLt~s~r~~-tG-~~~~~G~l~LAdgGvl~lDE--In~~~~~~qsaL 320 (506)
T 3f8t_A 247 YPVV-CSEILHH-VLDHLAPRGVYVDLRRTELTDLTAVLKED-RG-WALRAGAAVLADGGILAVDH--LEGAPEPHRWAL 320 (506)
T ss_dssp CHHH-HHHHHHH-HHHHTCSSEEEEEGGGCCHHHHSEEEEES-SS-EEEEECHHHHTTTSEEEEEC--CTTCCHHHHHHH
T ss_pred CCCh-HHHHHHH-HHHHhCCCeEEecCCCCCccCceEEEEcC-CC-cccCCCeeEEcCCCeeehHh--hhhCCHHHHHHH
Confidence 9999 9999999 6 788777 45555556788877776 66 888887765 99999 999999999999
Q ss_pred HHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCc
Q psy14566 242 HEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAP 321 (532)
Q Consensus 242 ~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~ 321 (532)
+|+||+|+++|. |+ +||+||+||||+||.+ +|++++++ +|++||++
T Consensus 321 lEaMEe~~VtI~------------------------------G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~a 366 (506)
T 3f8t_A 321 MEAMDKGTVTVD------------------------------GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQD 366 (506)
T ss_dssp HHHHHHSEEEET------------------------------TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHH
T ss_pred HHHHhCCcEEEC------------------------------CE--EcCCCeEEEEEeCccc-ccCCCCCc-cccCCChH
Confidence 999999999974 77 9999999999999998 99999999 99999999
Q ss_pred ccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccccccccccccccc
Q psy14566 322 IMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMS 401 (532)
Q Consensus 322 LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (532)
|||||||+|++.|.++++.|..-. ..+
T Consensus 367 lLDRFDLi~i~~d~pd~e~d~e~~----------------~~~------------------------------------- 393 (506)
T 3f8t_A 367 FLSHFDLIAFLGVDPRPGEPEEQD----------------TEV------------------------------------- 393 (506)
T ss_dssp HHTTCSEEEETTC-------------------------------------------------------------------
T ss_pred HhhheeeEEEecCCCChhHhhccc----------------CCC-------------------------------------
Confidence 999999999999999987762100 000
Q ss_pred ccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhh--ccccccChhHHHHHHHHHHHHhhccC
Q psy14566 402 RFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEK--VIERLIYHGAAKLLVDMYTQLRQRDG 479 (532)
Q Consensus 402 ~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar--~~~P~ls~eA~~~I~~~Y~~lR~~~~ 479 (532)
++.+ .+++|+ .||| .++|.+++++.++|.++|..+|+...
T Consensus 394 ------ls~e---~L~~yi-----------------------------~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~ 435 (506)
T 3f8t_A 394 ------PSYT---LLRRYL-----------------------------LYAIREHPAPELTEEARKRLEHWYETRREEVE 435 (506)
T ss_dssp ------CCHH---HHHHHH-----------------------------HHHHHHCSCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCHH---HHHHHH-----------------------------HHHHhcCCCceeCHHHHHHHHHHHHHHhcCcc
Confidence 1112 455555 9998 58999999999999999999998421
Q ss_pred C--CCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHH
Q psy14566 480 N--SSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQ 526 (532)
Q Consensus 480 ~--~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~ 526 (532)
. ......+++|+|+||+|||+|+|||||++|+.|+++|+..+..+.+
T Consensus 436 ~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 436 ERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 0 0112357899999999999999999999999999888777766654
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-42 Score=383.88 Aligned_cols=364 Identities=31% Similarity=0.422 Sum_probs=280.5
Q ss_pred eeeeec-ccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcchhch
Q psy14566 7 VCCIDE-FDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMS 85 (532)
Q Consensus 7 vccIDE-fDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~~~l~ 85 (532)
|.+-|+ +|++.|||++.|.|+.......-.+.|- ..-+++++.|+++...+..+...
T Consensus 209 v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~--------------~~~~~~~i~a~~i~~~~~~~~~~-------- 266 (595)
T 3f9v_A 209 IILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGS--------------RAVFDIYMKVSSIEVSQKVLDEV-------- 266 (595)
T ss_dssp EEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTT--------------CCCCCCCCEEEEEEECCCCCCCC--------
T ss_pred EEEecccccccccCCEEEEEEEEEecccccccCCC--------------cceEEEEEEEEeecccccccccC--------
Confidence 455666 8999999999999875432221111110 22378889998886555433221
Q ss_pred HHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCc---hhhHhHHHHHHhh
Q psy14566 86 AELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGN---EQIKKDRNLYQNL 162 (532)
Q Consensus 86 ~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~---~~lR~~I~~~~~~ 162 (532)
.++.++...|..+.+++++++.+..+++|.++|++.+|+++.+ .+++|..+. ..+|+++|
T Consensus 267 ------~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~------~l~~g~~~~~~~~~~r~~~~----- 329 (595)
T 3f9v_A 267 ------IISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALAL------ALFGGVPKVLEDTRIRGDIH----- 329 (595)
T ss_dssp ------CCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTT------TTTCCCCEETTTTEECCSCC-----
T ss_pred ------CCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHH------HHhCCCcccccCCCcCCCcc-----
Confidence 1233455667777889999999999999999999999999988 888885431 23444444
Q ss_pred hccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhccc------eeeeccccccc
Q psy14566 163 TSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMA------KMECLDEYEFD 231 (532)
Q Consensus 163 ~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~A------kv~~~de~~vd 231 (532)
++|+|+||+||+++.+. ..+..++ .+.+.+..+++. ..+...+..+..++|+ -++|+|| ++
T Consensus 330 -----vLL~GppGtGKT~LAr~-la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDE--id 401 (595)
T 3f9v_A 330 -----ILIIGDPGTAKSQMLQF-ISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDE--ID 401 (595)
T ss_dssp -----EEEEESSCCTHHHHHHS-SSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTT--TT
T ss_pred -----eEEECCCchHHHHHHHH-HHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeeh--hh
Confidence 99999999999999998 6666555 333456678888 4455555555555544 4589999 99
Q ss_pred CCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCC
Q psy14566 232 KMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKS 311 (532)
Q Consensus 232 ~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~ 311 (532)
+++...+.+|+++||+++++|. ++|+.++++++++||||+||..|+|++.++
T Consensus 402 ~l~~~~q~~Ll~~le~~~i~i~----------------------------~~g~~~~~~~~~~vIaatNp~~G~~~~~~~ 453 (595)
T 3f9v_A 402 KMRDEDRVAIHEAMEQQTVSIA----------------------------KAGIVAKLNARAAVIAAGNPKFGRYISERP 453 (595)
T ss_dssp CCCSHHHHHHHHHHHSSSEEEE----------------------------SSSSEEEECCCCEEEEEECCTTCCSCTTSC
T ss_pred hCCHhHhhhhHHHHhCCEEEEe----------------------------cCCcEEEecCceEEEEEcCCcCCccCcccC
Confidence 9999999999999999999999 999999999999999999999999999999
Q ss_pred ccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccccc
Q psy14566 312 LQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQH 391 (532)
Q Consensus 312 ~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~ 391 (532)
+.+|+.|+++||||||++|++.|.++++ |..|+ +|++.. |.... ..
T Consensus 454 ~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~----------------~~il~~---~~~~~-------~~------- 499 (595)
T 3f9v_A 454 VSDNINLPPTILSRFDLIFILKDQPGEQ-DRELA----------------NYILDV---HSGKS-------TK------- 499 (595)
T ss_dssp SCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHH----------------HHHHTT---TCCCS-------SS-------
T ss_pred chhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHH----------------HHHHHH---hhccc-------cc-------
Confidence 9999999999999999999999999999 99999 666654 32100 00
Q ss_pred ccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc-cccccChhHHHHHHHH
Q psy14566 392 NVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV-IERLIYHGAAKLLVDM 470 (532)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~-~~P~ls~eA~~~I~~~ 470 (532)
..++.+ .+++|+ .|||. ++|.|+++|.+.|.++
T Consensus 500 --------------~~l~~~---~l~~~i-----------------------------~~ar~~~~p~ls~ea~~~l~~~ 533 (595)
T 3f9v_A 500 --------------NIIDID---TLRKYI-----------------------------AYARKYVTPKITSEAKNLITDF 533 (595)
T ss_dssp --------------STTCCT---TTHHHH-----------------------------HHHHHHHCCCCCCCTHHHHHHH
T ss_pred --------------cCCCHH---HHHHHH-----------------------------HHHHHhCCCCCCHHHHHHHHHH
Confidence 001112 455555 89985 7999999999999999
Q ss_pred HHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHH
Q psy14566 471 YTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQ 526 (532)
Q Consensus 471 Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~ 526 (532)
|..||+...... ..++++|+|+||+|||||+|||+|++++.|+++|+..+..+.+
T Consensus 534 y~~lR~~~~~~~-~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 534 FVEMRKKSSETP-DSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HTTSSCSCCBCS-SSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhhccCC-CccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 999998765432 2368999999999999999999999999999877766655443
No 3
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.85 E-value=2.9e-23 Score=220.01 Aligned_cols=195 Identities=22% Similarity=0.247 Sum_probs=132.1
Q ss_pred CcCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCc
Q psy14566 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELH 80 (532)
Q Consensus 1 vlad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~ 80 (532)
+|||+|+||||||++|++.++++|||+||+|+|+|+ | + +|+++++|+| ++||.+ +|+..
T Consensus 297 ~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G-------------~-~lparf~VIA----A~NP~~-~yd~~ 355 (506)
T 3f8t_A 297 VLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--G-------------I-ALNARCAVLA----AINPGE-QWPSD 355 (506)
T ss_dssp HHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--T-------------E-EEECCCEEEE----EECCCC---CCS
T ss_pred EEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--C-------------E-EcCCCeEEEE----EeCccc-ccCCC
Confidence 379999999999999999999999999999999987 6 4 7899999999 799997 66432
Q ss_pred ----chhchHHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHH
Q psy14566 81 ----TEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDR 156 (532)
Q Consensus 81 ----~~~l~~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I 156 (532)
+.+++.+++ +|||+++.+...++..... +. .......+.+++|+
T Consensus 356 ~s~~~~~Lp~alL------DRFDLi~i~~d~pd~e~d~-----------e~---------------~~~~ls~e~L~~yi 403 (506)
T 3f8t_A 356 PPIARIDLDQDFL------SHFDLIAFLGVDPRPGEPE-----------EQ---------------DTEVPSYTLLRRYL 403 (506)
T ss_dssp CGGGGCCSCHHHH------TTCSEEEETTC----------------------------------------CCHHHHHHHH
T ss_pred CCccccCCChHHh------hheeeEEEecCCCChhHhh-----------cc---------------cCCCCCHHHHHHHH
Confidence 235677776 8899888764443321110 00 00111246789999
Q ss_pred HHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCC--CCCCCceeEEEeeccccchhhhccceeeecccccccCCC
Q psy14566 157 NLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGN--SSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMD 234 (532)
Q Consensus 157 ~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~--~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d 234 (532)
.|+++ .+++|.+. .+..+.|..+|..+|...+. ......+++|+|++++++|++||+|+|++++. |+..|
T Consensus 404 ~~ar~--~~~~p~ls----~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~--V~~eD 475 (506)
T 3f8t_A 404 LYAIR--EHPAPELT----EEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDD--VEPED 475 (506)
T ss_dssp HHHHH--HCSCCEEC----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSE--ECHHH
T ss_pred HHHHh--cCCCceeC----HHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCC--CCHHH
Confidence 98762 13447663 34456666669999863110 01124567899999999999999999999999 88877
Q ss_pred hHHHHHHHHHHHhcccccccCcchh
Q psy14566 235 PHDQVAIHEAMEQQTISIAKRPELA 259 (532)
Q Consensus 235 ~~~~~~l~eaMeqq~isi~~~~~~~ 259 (532)
+..++.|. +.+...++.+|++|
T Consensus 476 V~~Ai~L~---~~Sl~~~a~dp~tg 497 (506)
T 3f8t_A 476 VDIAAELV---DWYLETAMQIPGGD 497 (506)
T ss_dssp HHHHHHHH---HHHHHHTTC-----
T ss_pred HHHHHHHH---HHHHHHhcCCCCCC
Confidence 77766654 44444578788887
No 4
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=2.7e-20 Score=206.10 Aligned_cols=194 Identities=34% Similarity=0.489 Sum_probs=140.7
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHT 81 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~ 81 (532)
+||+|||||||||+|++.++.+||++||+|+++++++|+ ..+++++++|+| ++||.+|+|+...
T Consensus 389 ~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~------------~~~~~~~~~vIa----atNp~~G~~~~~~ 452 (595)
T 3f9v_A 389 LADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGI------------VAKLNARAAVIA----AGNPKFGRYISER 452 (595)
T ss_dssp HHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSS------------EEEECCCCEEEE----EECCTTCCSCTTS
T ss_pred ecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCc------------EEEecCceEEEE----EcCCcCCccCccc
Confidence 589999999999999999999999999999999999997 458899999999 6899999986432
Q ss_pred -----hhchHHHhhccCCHHHHHHHHhHhh-----chhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchh
Q psy14566 82 -----EEMSAELMKKHMTESEWNKIYEMSR-----DRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQ 151 (532)
Q Consensus 82 -----~~l~~~~l~~~~~~srfDlI~~l~~-----d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~ 151 (532)
..++++++ +|||+++.+.. +..+..+++..+. ... .... -....
T Consensus 453 ~~~~ni~l~~aLl------~RFDl~~~~~~~~~~e~~~i~~~il~~~~-----~~~--------------~~~~-l~~~~ 506 (595)
T 3f9v_A 453 PVSDNINLPPTIL------SRFDLIFILKDQPGEQDRELANYILDVHS-----GKS--------------TKNI-IDIDT 506 (595)
T ss_dssp CSCTTTCSCSSSG------GGCSCCEEECCTTHHHHHHHHHHHHTTTC-----CCS--------------SSST-TCCTT
T ss_pred CchhccCCCHHHH------hhCeEEEEeCCCCCHHHHHHHHHHHHHhh-----ccc--------------cccC-CCHHH
Confidence 14555554 78988775422 3445555554322 100 0011 11456
Q ss_pred hHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeeccccccc
Q psy14566 152 IKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFD 231 (532)
Q Consensus 152 lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd 231 (532)
+++|+.+++. .++|.+.. +..+.|..+|.+||.....+ ...++++|+|++++++|+++|+|+++++++ |+
T Consensus 507 l~~~i~~ar~---~~~p~ls~----ea~~~l~~~y~~lR~~~~~~-~~~~~~~s~R~l~~lirla~a~A~l~~~~~--V~ 576 (595)
T 3f9v_A 507 LRKYIAYARK---YVTPKITS----EAKNLITDFFVEMRKKSSET-PDSPILITPRQLEALIRISEAYAKMALKAE--VT 576 (595)
T ss_dssp THHHHHHHHH---HHCCCCCC----CTHHHHHHHHTTSSCSCCBC-SSSCBCSSTTTTTHHHHHHHHHHHTTSSCC--SS
T ss_pred HHHHHHHHHH---hCCCCCCH----HHHHHHHHHHHHHHHhhccC-CCccccccHHHHHHHHHHHHHHHHHhCcCC--CC
Confidence 8999987764 23466632 33456666699998763221 123577899999999999999999999999 88
Q ss_pred CCChHHHHHHH-HHHHh
Q psy14566 232 KMDPHDQVAIH-EAMEQ 247 (532)
Q Consensus 232 ~~d~~~~~~l~-eaMeq 247 (532)
..|..++..+. ++|+|
T Consensus 577 ~~dv~~Ai~l~~~sl~~ 593 (595)
T 3f9v_A 577 REDAERAINIMRLFLES 593 (595)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888887765 45544
No 5
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.35 E-value=4.5e-12 Score=137.20 Aligned_cols=256 Identities=16% Similarity=0.073 Sum_probs=154.5
Q ss_pred hhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHH
Q psy14566 109 NLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQ 188 (532)
Q Consensus 109 ~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~ 188 (532)
+.++.+..++.+.+.|.+.+...+.. .+.++ -+++|.|.||+||+.+.+. ...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~------al~~~--------------------~~VLL~GpPGtGKT~LAra-La~ 63 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLL------AALSG--------------------ESVFLLGPPGIAKSLIARR-LKF 63 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHH------HHHHT--------------------CEEEEECCSSSSHHHHHHH-GGG
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH------HHhcC--------------------CeeEeecCchHHHHHHHHH-HHH
Confidence 34566777778889998887765544 22211 1289999999999999887 433
Q ss_pred hccc-------cCCCCCCCc----eeE-EEeeccccchhhh---ccceeeecccccccCCChHHHHHHHHHHHhcccccc
Q psy14566 189 LRQR-------DGNSSSKAT----WRI-TTRQLESLIRLSE---AMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIA 253 (532)
Q Consensus 189 Lr~r-------~g~~ss~~g----lt~-T~RqlESliRLsE---A~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~ 253 (532)
...+ ....++... +.. ..+......+... +.+-+.++|| ++.++...+.+|+++|+.+.+++.
T Consensus 64 ~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDE--I~r~~~~~q~~LL~~lee~~v~i~ 141 (500)
T 3nbx_X 64 AFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDE--IWKAGPAILNTLLTAINERQFRNG 141 (500)
T ss_dssp GBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGGGCSEEEEES--GGGCCHHHHHHHHHHHHSSEEECS
T ss_pred HHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHh--HhhhcHHHHHHHHHHHHHHhccCC
Confidence 3211 000000000 111 0000000000111 1244789999 999999999999999999888754
Q ss_pred cCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEec
Q psy14566 254 KRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLI 333 (532)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~ 333 (532)
|....++.+. +++|+||.. +...+.++|++|| ++.+..
T Consensus 142 ------------------------------G~~~~~~~~~-iI~ATN~lp----------e~~~~~~aLldRF-~~~i~v 179 (500)
T 3nbx_X 142 ------------------------------AHVEKIPMRL-LVAASNELP----------EADSSLEALYDRM-LIRLWL 179 (500)
T ss_dssp ------------------------------SSEEECCCCE-EEEEESSCC----------CTTCTTHHHHTTC-CEEEEC
T ss_pred ------------------------------CCcCCcchhh-hhhccccCC----------CccccHHHHHHHH-HHHHHH
Confidence 6778889886 677888631 2334567999999 555666
Q ss_pred ccCCchhh-ccccCccchhhhhcccccccccccccchhhhhhhhhccccccccccccccccccccccccccccchhhhhh
Q psy14566 334 DECNEILD-YGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDE 412 (532)
Q Consensus 334 D~~d~~~D-~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (532)
+.|++..+ ..|- .. +...... .. .. ...+..+
T Consensus 180 ~~p~~~ee~~~IL--------------------~~---~~~~~~~-----~~---~~---------------~~~~~~e- 212 (500)
T 3nbx_X 180 DKVQDKANFRSML--------------------TS---QQDENDN-----PV---PD---------------ALQVTDE- 212 (500)
T ss_dssp CSCCCHHHHHHHH--------------------TC---CCCTTSC-----CS---CT---------------TTSBCHH-
T ss_pred HHhhhhhhHHHHH--------------------hc---ccccCCC-----CC---Cc---------------cceecHH-
Confidence 77776433 2222 10 1000000 00 00 0001111
Q ss_pred hHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchh
Q psy14566 413 CNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTR 492 (532)
Q Consensus 413 ~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~R 492 (532)
.+..+. .+++ ...+++++.++|.+.+..+|.... ...+++|
T Consensus 213 --~l~~~~-----------------------------~~~~--~v~v~d~v~e~i~~l~~~lr~~r~------~~~iS~R 253 (500)
T 3nbx_X 213 --EYERWQ-----------------------------KEIG--EITLPDHVFELIFMLRQQLDKLPD------APYVSDR 253 (500)
T ss_dssp --HHHHHH-----------------------------HHHT--TCBCCHHHHHHHHHHHHHHHHCSS------SCCCCHH
T ss_pred --HHHHHH-----------------------------hcCC--cccCchHHHHHHHHHHHHhhcCCC------CCccchh
Confidence 232222 2333 345788998999888887776532 2357999
Q ss_pred hHHHHHHHHHhhhhccCcccccccccCch
Q psy14566 493 QLESLIRLSEAMAKMECLDELGKCCETNT 521 (532)
Q Consensus 493 qLESLIRLSeA~AKl~l~~~Vt~~d~~~~ 521 (532)
.+++++|+++|+|.++.++.|+++|+..+
T Consensus 254 ~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 254 RWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred HHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 99999999999999999999999998743
No 6
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.32 E-value=1.1e-11 Score=126.47 Aligned_cols=262 Identities=13% Similarity=0.068 Sum_probs=154.9
Q ss_pred hhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHH
Q psy14566 109 NLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQ 188 (532)
Q Consensus 109 ~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~ 188 (532)
..++.+..++.+.+.|++.++..+.. .+.. .-+++|.|.||+||+.+.+. +..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~------~l~~--------------------~~~vll~G~pGtGKT~la~~-la~ 68 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLI------GICT--------------------GGHILLEGVPGLAKTLSVNT-LAK 68 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHH------HHHH--------------------TCCEEEESCCCHHHHHHHHH-HHH
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHH------HHHc--------------------CCeEEEECCCCCcHHHHHHH-HHH
Confidence 34555666667778887776655433 1111 11389999999999999888 444
Q ss_pred hccc-----cC-CCCCCCceeE-EEeeccccchhhhccc---eeeecccccccCCChHHHHHHHHHHHhcccccccCcch
Q psy14566 189 LRQR-----DG-NSSSKATWRI-TTRQLESLIRLSEAMA---KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPEL 258 (532)
Q Consensus 189 Lr~r-----~g-~~ss~~glt~-T~RqlESliRLsEA~A---kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~ 258 (532)
.... .. .......+.. .........+....|. .+.+.|| ++.++...+..|+++|++..+++.
T Consensus 69 ~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDE--i~~~~~~~~~~Ll~~l~~~~~~~~----- 141 (331)
T 2r44_A 69 TMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADE--VNRSPAKVQSALLECMQEKQVTIG----- 141 (331)
T ss_dssp HTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEET--GGGSCHHHHHHHHHHHHHSEEEET-----
T ss_pred HhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEc--cccCCHHHHHHHHHHHhcCceeeC-----
Confidence 3221 00 0000011111 1111111122222232 5788999 999999989999999999877754
Q ss_pred hhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCc
Q psy14566 259 ALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNE 338 (532)
Q Consensus 259 ~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~ 338 (532)
|....++.++.|+|++||.... ....++++|+|||++.+. .+.|+.
T Consensus 142 -------------------------g~~~~~~~~~~viat~np~~~~--------~~~~l~~~l~~Rf~~~i~-i~~p~~ 187 (331)
T 2r44_A 142 -------------------------DTTYPLDNPFLVLATQNPVEQE--------GTYPLPEAQVDRFMMKIH-LTYLDK 187 (331)
T ss_dssp -------------------------TEEEECCSSCEEEEEECTTCCS--------CCCCCCHHHHTTSSEEEE-CCCCCH
T ss_pred -------------------------CEEEECCCCEEEEEecCCCccc--------CcccCCHHHHhheeEEEE-cCCCCH
Confidence 6677889999999999997511 122689999999987544 344554
Q ss_pred hhhccccCccchhhhhcccccccccccccchhhhhhhhhccccccccccccccccccccccccccccchhhhhhhHHHHh
Q psy14566 339 ILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILD 418 (532)
Q Consensus 339 ~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (532)
+.-..+- .. +..... ... . ......+ .+..
T Consensus 188 ~~~~~il--------------------~~---~~~~~~------~~~---~---------------~~~~~~~---~i~~ 217 (331)
T 2r44_A 188 ESELEVM--------------------RR---VSNMNF------NYQ---V---------------QKIVSKN---DVLE 217 (331)
T ss_dssp HHHHHHH--------------------HH---HHCTTC------CCC---C---------------CCCSCHH---HHHH
T ss_pred HHHHHHH--------------------Hh---ccccCc------chh---c---------------cccCCHH---HHHH
Confidence 3322222 10 000000 000 0 0000001 1111
Q ss_pred hccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhccccccChhHHHHHHHHHHHHhhccCCCC----CCCccccchhhH
Q psy14566 419 YGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSS----SKATWRITTRQL 494 (532)
Q Consensus 419 yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~----~~~~~~iT~RqL 494 (532)
.. ... -...+++++.+.|.+++..+|....... .....++++|.+
T Consensus 218 ~~-----------------------------~~~--~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~ 266 (331)
T 2r44_A 218 IR-----------------------------NEI--NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAA 266 (331)
T ss_dssp HH-----------------------------HHH--HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHH
T ss_pred HH-----------------------------HHh--ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHH
Confidence 10 111 2346899999999999999987542000 001246799999
Q ss_pred HHHHHHHHhhhhccCcccccccccC
Q psy14566 495 ESLIRLSEAMAKMECLDELGKCCET 519 (532)
Q Consensus 495 ESLIRLSeA~AKl~l~~~Vt~~d~~ 519 (532)
++++|++.|+|.++-++.|+++|+.
T Consensus 267 ~~ll~~a~a~A~l~g~~~v~~~dv~ 291 (331)
T 2r44_A 267 INLNRVAKAMAFFNNRDYVLPEDIK 291 (331)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 9999999999999999999976553
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.16 E-value=2.7e-10 Score=116.42 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=115.9
Q ss_pred ccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeec
Q psy14566 218 AMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILA 297 (532)
Q Consensus 218 A~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlA 297 (532)
|+..+.++|| ++.++...+..|+.+|+.+.+.+. ..|.....++++.|+|
T Consensus 143 a~~~vl~iDE--i~~l~~~~~~~Ll~~le~~~~~~~----------------------------~~g~~~~~~~~~~li~ 192 (350)
T 1g8p_A 143 ANRGYLYIDE--CNLLEDHIVDLLLDVAQSGENVVE----------------------------RDGLSIRHPARFVLVG 192 (350)
T ss_dssp HTTEEEEETT--GGGSCHHHHHHHHHHHHHSEEEEC----------------------------CTTCCEEEECCEEEEE
T ss_pred cCCCEEEEeC--hhhCCHHHHHHHHHHHhcCceEEE----------------------------ecceEEeeCCceEEEE
Confidence 3345677777 777777777777788887776666 7888899999999999
Q ss_pred ccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhh
Q psy14566 298 AANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELA 377 (532)
Q Consensus 298 aanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~ 377 (532)
|+||..+ .++++|+|||++.+.+..-.+.+....|. ++.+.. ...
T Consensus 193 ~~n~~~~------------~l~~~L~~R~~~~~~l~~~~~~~~~~~il----------------~~~~~~-------~~~ 237 (350)
T 1g8p_A 193 SGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVI----------------RRRDTY-------DAD 237 (350)
T ss_dssp EECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHH----------------HHHHHH-------HHC
T ss_pred EeCCCCC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHH----------------HHHHhc-------ccC
Confidence 9999542 47899999999877665554554443443 221110 000
Q ss_pred ccccccccccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhc--c
Q psy14566 378 LNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKV--I 455 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~--~ 455 (532)
. + ..+. .| ..+...+++++.+++. -
T Consensus 238 -----~---------------------------~--~~~~----------~~---------~~~~~~~~~~i~~~~~~~~ 264 (350)
T 1g8p_A 238 -----P---------------------------K--AFLE----------EW---------RPKDMDIRNQILEARERLP 264 (350)
T ss_dssp -----H---------------------------H--HHHH----------HH---------HHHHHHHHHHHHHHHHHGG
T ss_pred -----c---------------------------h--hhcc----------cc---------ccchHHHHHHHHHHHHhCC
Confidence 0 0 0000 00 0122334444466553 2
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCc
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETN 520 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~ 520 (532)
...+++++.+.|.+++...+. -++|+++.++|++.++|.++-++.|+++|+..
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~------------~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~ 317 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGS------------DGLRGELTLLRSARALAALEGATAVGRDHLKR 317 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSS------------CSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC------------CCccHHHHHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 348999999999998865421 16899999999999999999999999766543
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.76 E-value=1.2e-08 Score=113.03 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=49.7
Q ss_pred cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchh
Q psy14566 455 IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTS 522 (532)
Q Consensus 455 ~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~ 522 (532)
..|.++++|.+.|.++|..+ ... +..+++++|+|++++|.|.++|+++.++.|+.+|+..+.
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~--~g~----r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKR--AGR----KGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHT--TCS----TTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhh--hcc----ccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 45899999999999999643 211 234788999999999999999999999999976654443
No 9
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.77 E-value=0.00019 Score=71.32 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=41.2
Q ss_pred cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHh
Q psy14566 455 IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLR 529 (532)
Q Consensus 455 ~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~ 529 (532)
..+.++++|.+.|.+++...++... .-.+|+|+.+++-+-+.+..+....-......+..+|.+++.
T Consensus 231 ~~~~~~~~a~~~l~~~~~~~~~~~~--------~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 231 VNIAFTTDAVKKIAEAAFRVNEKTE--------NIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHSC--------CCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred CeeccCHHHHHHHHHHhhhhccccc--------ccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 5678999999999998876554322 125899999988776555444332111111123566666664
No 10
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.53 E-value=0.00029 Score=68.89 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=32.5
Q ss_pred cccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCccccccccc
Q psy14566 457 RLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCE 518 (532)
Q Consensus 457 P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~ 518 (532)
|.++++|.+.|..+ .+|-.+|+|+.+++-+-+.+. ...++.+|.
T Consensus 207 ~~~~~~a~~~L~~~---------------~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 207 PGFTERARETLLNY---------------RWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CCBCHHHHHHHHHS---------------CCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred cCcCHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 58999999988643 135569999999998877765 456776655
No 11
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.49 E-value=0.00052 Score=69.42 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=71.7
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccch---h--hhccceeeecccccccCCChHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIR---L--SEAMAKMECLDEYEFDKMDPHDQVAI 241 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliR---L--sEA~Akv~~~de~~vd~~d~~~~~~l 241 (532)
+.++.|.||+||+.+.+. +...... .-+.+..-..+.... . ..++-.+.++|| ++.++...+..|
T Consensus 57 ~vll~G~~GtGKT~la~~-ia~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE--i~~l~~~~~~~L 126 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANI-ISYEMSA-------NIKTTAAPMIEKSGDLAAILTNLSEGDILFIDE--IHRLSPAIEEVL 126 (338)
T ss_dssp CEEEECSTTSSHHHHHHH-HHHHTTC-------CEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEET--GGGCCHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH-HHHHhCC-------CeEEecchhccchhHHHHHHHhccCCCEEEEec--hhhcCHHHHHHH
Confidence 478999999999999888 4332211 011111111111111 1 124445678888 888888888888
Q ss_pred HHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCc
Q psy14566 242 HEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAP 321 (532)
Q Consensus 242 ~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~ 321 (532)
+.+|+...+.+..+ +| .....+...++ ++.+++|+|+.. .+.++
T Consensus 127 l~~l~~~~~~~~~~---------~~-------------~~~~~~~~~~~-~~~~i~atn~~~-------------~l~~~ 170 (338)
T 3pfi_A 127 YPAMEDYRLDIIIG---------SG-------------PAAQTIKIDLP-KFTLIGATTRAG-------------MLSNP 170 (338)
T ss_dssp HHHHHTSCC-------------------------------CCCCCCCCC-CCEEEEEESCGG-------------GSCHH
T ss_pred HHHHHhccchhhcc---------cC-------------ccccceecCCC-CeEEEEeCCCcc-------------ccCHH
Confidence 88888877665300 00 00123444455 789999999832 37889
Q ss_pred ccccccEEEEecc
Q psy14566 322 IMSRFDLFFVLID 334 (532)
Q Consensus 322 LLSRFDLif~l~D 334 (532)
|++|||.++.+..
T Consensus 171 L~~R~~~~i~l~~ 183 (338)
T 3pfi_A 171 LRDRFGMQFRLEF 183 (338)
T ss_dssp HHTTCSEEEECCC
T ss_pred HHhhcCEEeeCCC
Confidence 9999988765443
No 12
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.48 E-value=0.00038 Score=69.30 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=48.9
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccC
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAAN 300 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaan 300 (532)
.+.+.|| +++++...+..|+.+|+...+... .|....+ .++-+|+++|
T Consensus 121 ~vl~lDE--i~~l~~~~~~~Ll~~le~~~~~~~-----------------------------~~~~~~~-~~~iiI~ttn 168 (311)
T 4fcw_A 121 SVILFDA--IEKAHPDVFNILLQMLDDGRLTDS-----------------------------HGRTVDF-RNTVIIMTSN 168 (311)
T ss_dssp EEEEEET--GGGSCHHHHHHHHHHHHHSEEECT-----------------------------TSCEEEC-TTEEEEEEES
T ss_pred eEEEEeC--hhhcCHHHHHHHHHHHhcCEEEcC-----------------------------CCCEEEC-CCcEEEEecc
Confidence 3566677 677766666666677766554422 2222222 2466999999
Q ss_pred CC-------CCCCCCCCCccccc------cCCCcccccccEEEEec
Q psy14566 301 PI-------GGQYDRTKSLQHNV------SLSAPIMSRFDLFFVLI 333 (532)
Q Consensus 301 p~-------~g~~~~~~~~~~ni------~l~~~LLSRFDLif~l~ 333 (532)
+- .+.......+.+.+ .++++|++|||.++.+.
T Consensus 169 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~ 214 (311)
T 4fcw_A 169 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFR 214 (311)
T ss_dssp TTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECC
T ss_pred cCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeC
Confidence 82 22233333444433 68999999999876643
No 13
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.45 E-value=0.00063 Score=68.49 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=32.2
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCccccccccc
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCE 518 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~ 518 (532)
.+.++++|.+.|..| ++|=.+|+|+.+++-+-+.+. ...++.+|.
T Consensus 201 ~~~~s~~a~~~L~~~---------------~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l 245 (304)
T 1ojl_A 201 VKGFTPQAMDLLIHY---------------DWPGNIRELENAIERAVVLLT---GEYISEREL 245 (304)
T ss_dssp CCCBCHHHHHHHHHC---------------CCSSHHHHHHHHHHHHHHHCC---SSSBCGGGS
T ss_pred ccCCCHHHHHHHHcC---------------CCCCCHHHHHHHHHHHHHhCC---CCcccHHhh
Confidence 367899999888754 145578999999988877765 345555554
No 14
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.16 E-value=0.00019 Score=78.34 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=28.9
Q ss_pred ccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchhhcccc
Q psy14566 291 ARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGEC 345 (532)
Q Consensus 291 ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia 345 (532)
..+-|++|+|+.. .|+++|++||+.| -.+.++.+.+..+.
T Consensus 223 ~~v~iI~ttN~~~-------------~l~~aL~~R~~vi--~~~~~~~~e~~~Il 262 (543)
T 3m6a_A 223 SKVLFIATANNLA-------------TIPGPLRDRMEII--NIAGYTEIEKLEIV 262 (543)
T ss_dssp SSCEEEEECSSTT-------------TSCHHHHHHEEEE--ECCCCCHHHHHHHH
T ss_pred cceEEEeccCccc-------------cCCHHHHhhccee--eeCCCCHHHHHHHH
Confidence 5788999999963 6889999999753 45666655444443
No 15
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.11 E-value=0.0013 Score=67.78 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=44.3
Q ss_pred cccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeEEEeeccc-cch--------hhhccceeeecccccccCC
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRITTRQLES-LIR--------LSEAMAKMECLDEYEFDKM 233 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~T~RqlES-liR--------LsEA~Akv~~~de~~vd~~ 233 (532)
++++.|.||+||+.+.+.....+... +....+..++.. ...+. +.. +..+.-.+.++|| ++++
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE--i~~l 149 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVG--EDVENILTRLLQASDWNVQKAQKGIVFIDE--IDKI 149 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----------CTHHHHHHHHHTTTCHHHHTTSEEEEET--GGGC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCC--ccHHHHHHHHHhhccchhhhcCCeEEEEcC--HHHH
Confidence 47899999999999888843333111 100001011111 01111 111 2234456788999 9999
Q ss_pred ChH--------------HHHHHHHHHHhcccccc
Q psy14566 234 DPH--------------DQVAIHEAMEQQTISIA 253 (532)
Q Consensus 234 d~~--------------~~~~l~eaMeqq~isi~ 253 (532)
... .+..|+.+|+...+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 183 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIP 183 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEEC--
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccceecc
Confidence 876 67789999998877766
No 16
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.06 E-value=0.00061 Score=67.82 Aligned_cols=48 Identities=8% Similarity=-0.006 Sum_probs=33.2
Q ss_pred cccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCc
Q psy14566 455 IERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECL 510 (532)
Q Consensus 455 ~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~ 510 (532)
....+++++.+.|.++...++... .+-.+|+|..+++-+-.++..++.
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~--------~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 220 QNYQMTPEAETALRAYIGLRRNQP--------HFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp TTCEECHHHHHHHHHHHHHHTTSS--------SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhccCC--------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888877664432 344689999998877766555543
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.77 E-value=0.011 Score=58.96 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=68.8
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhh--ccceeeecccccccCCChHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSE--AMAKMECLDEYEFDKMDPHDQVAIHEA 244 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsE--A~Akv~~~de~~vd~~d~~~~~~l~ea 244 (532)
..++.|.||+||+.+.+.+...+... ........++ ...++. ..+.+ +...+.+.|| ++.++...+..++.+
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~-~~~~l~--~~l~~~~~~~~~l~lDE--i~~l~~~~~~~L~~~ 113 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIE-KPGDLA--AILANSLEEGDILFIDE--IHRLSRQAEEHLYPA 113 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCC-EEEECTTTCC-SHHHHH--HHHTTTCCTTCEEEETT--TTSCCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC-EEEEeccccC-ChHHHH--HHHHHhccCCCEEEEEC--CcccccchHHHHHHH
Confidence 37899999999999988844444211 0000000000 001111 11111 3445678888 888888777788888
Q ss_pred HHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccc
Q psy14566 245 MEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS 324 (532)
Q Consensus 245 Meqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS 324 (532)
|+...+.+.- +.+ . ...........+.+++|+|..+ .+.++|++
T Consensus 114 l~~~~~~~v~---------~~~-------------~-~~~~~~~~~~~~~~i~~t~~~~-------------~~~~~l~~ 157 (324)
T 1hqc_A 114 MEDFVMDIVI---------GQG-------------P-AARTIRLELPRFTLIGATTRPG-------------LITAPLLS 157 (324)
T ss_dssp HHHSEEEECC---------SSS-------------S-SCCCEEEECCCCEEEEEESCCS-------------SCSCSTTT
T ss_pred HHhhhhHHhc---------ccc-------------c-cccccccCCCCEEEEEeCCCcc-------------cCCHHHHh
Confidence 8887665430 000 0 1111122234788999998752 35678999
Q ss_pred cccEEEEe
Q psy14566 325 RFDLFFVL 332 (532)
Q Consensus 325 RFDLif~l 332 (532)
||+.++.+
T Consensus 158 R~~~~i~l 165 (324)
T 1hqc_A 158 RFGIVEHL 165 (324)
T ss_dssp TCSCEEEC
T ss_pred cccEEEec
Confidence 99755443
No 18
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.49 E-value=0.00053 Score=73.97 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeee
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLA 64 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA 64 (532)
..||++|||++++++..+.+|+++|+.+.+++ .|. ...++.+..|+|
T Consensus 109 ~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~------------~~~~~~~~iI~A 155 (500)
T 3nbx_X 109 EAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAH------------VEKIPMRLLVAA 155 (500)
T ss_dssp GCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSS------------EEECCCCEEEEE
T ss_pred cceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCC------------cCCcchhhhhhc
Confidence 45689999999999999999999999999987 443 235677764554
No 19
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.39 E-value=0.004 Score=70.31 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=53.7
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccC
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAAN 300 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaan 300 (532)
.+.+.|| +++++......|+.+|+.+.+... .|....+ .++-||+|+|
T Consensus 559 ~vl~lDE--i~~~~~~~~~~Ll~~le~~~~~~~-----------------------------~g~~~~~-~~~~iI~tsN 606 (758)
T 1r6b_X 559 AVLLLDE--IEKAHPDVFNILLQVMDNGTLTDN-----------------------------NGRKADF-RNVVLVMTTN 606 (758)
T ss_dssp EEEEEET--GGGSCHHHHHHHHHHHHHSEEEET-----------------------------TTEEEEC-TTEEEEEEEC
T ss_pred cEEEEeC--ccccCHHHHHHHHHHhcCcEEEcC-----------------------------CCCEEec-CCeEEEEecC
Confidence 4567777 777777777777777777665543 3555555 6789999999
Q ss_pred CCCCC-------CCC---CCCccccc--cCCCcccccccEEEEecccCCch
Q psy14566 301 PIGGQ-------YDR---TKSLQHNV--SLSAPIMSRFDLFFVLIDECNEI 339 (532)
Q Consensus 301 p~~g~-------~~~---~~~~~~ni--~l~~~LLSRFDLif~l~D~~d~~ 339 (532)
|.... |.. ...+.+.+ .|+++|++|||.+ +.....+++
T Consensus 607 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~-i~~~~l~~~ 656 (758)
T 1r6b_X 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI-IWFDHLSTD 656 (758)
T ss_dssp SSCC-----------------CHHHHHHHSCHHHHTTCSEE-EECCCCCHH
T ss_pred cchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc-eeeCCCCHH
Confidence 84321 110 11122222 7899999999988 455555553
No 20
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.34 E-value=0.00069 Score=68.43 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=41.7
Q ss_pred CceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCC
Q psy14566 5 NGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRF 74 (532)
Q Consensus 5 ~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~ 74 (532)
+||++|||+|++++..+..++++|+++.+++ .|. ...++.+..|+| +.||..
T Consensus 110 ~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~------------~~~~~~~~~via----t~np~~ 161 (331)
T 2r44_A 110 SNFILADEVNRSPAKVQSALLECMQEKQVTI--GDT------------TYPLDNPFLVLA----TQNPVE 161 (331)
T ss_dssp SSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTE------------EEECCSSCEEEE----EECTTC
T ss_pred ccEEEEEccccCCHHHHHHHHHHHhcCceee--CCE------------EEECCCCEEEEE----ecCCCc
Confidence 4899999999999999999999999999887 332 225677777887 578753
No 21
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.99 E-value=0.002 Score=71.11 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=32.8
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisia 36 (532)
.|++|+++|||++.|++..+..|+.+||++++.+.
T Consensus 199 ~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~ 233 (604)
T 3k1j_A 199 RAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT 233 (604)
T ss_dssp HTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB
T ss_pred ecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec
Confidence 47899999999999999999999999999999875
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.83 E-value=0.0063 Score=59.68 Aligned_cols=30 Identities=13% Similarity=-0.099 Sum_probs=24.7
Q ss_pred cchhhHHHHHHHHHhhhhccCccccccccc
Q psy14566 489 ITTRQLESLIRLSEAMAKMECLDELGKCCE 518 (532)
Q Consensus 489 iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~ 518 (532)
.+.|.|+.|++-+.+.|-.+.++.||.+|+
T Consensus 222 ~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~ 251 (285)
T 3h4m_A 222 CVGAELKAICTEAGMNAIRELRDYVTMDDF 251 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccCcCCHHHH
Confidence 478999999999999998888888885443
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.43 E-value=0.067 Score=52.64 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=34.4
Q ss_pred CCCceeccccccccccccccc----------cee--------eecccceeecccCCCCCCCCCCCCccccccCCCccccc
Q psy14566 264 DNGVCCIDEFDNLSVTSSKAG----------VRA--------TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSR 325 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~kag----------i~~--------~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSR 325 (532)
..++.++||+|.+.......+ +.. ....++.|+|++|... .+++++++|
T Consensus 113 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~-------------~l~~~l~~R 179 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ-------------ELDEAALRR 179 (297)
T ss_dssp CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG-------------GBCHHHHHH
T ss_pred CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh-------------hCCHHHHhh
Confidence 457899999999854332111 000 0124678999998752 477899999
Q ss_pred ccEEEEe
Q psy14566 326 FDLFFVL 332 (532)
Q Consensus 326 FDLif~l 332 (532)
||..+.+
T Consensus 180 ~~~~i~~ 186 (297)
T 3b9p_A 180 FTKRVYV 186 (297)
T ss_dssp CCEEEEC
T ss_pred CCeEEEe
Confidence 9866443
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.23 E-value=0.035 Score=57.40 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCceecccccccccccc-----------------cccceeeecccceeecccCCCCCCCCCCCCccccccCCCccccccc
Q psy14566 265 NGVCCIDEFDNLSVTSS-----------------KAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFD 327 (532)
Q Consensus 265 ~~~~~~~e~~~~~~~~~-----------------kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFD 327 (532)
.||.||||+|.+..... -.|.....+.++-||||+|+.. .|++.|++||+
T Consensus 208 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~-------------~l~~~l~~R~~ 274 (389)
T 3vfd_A 208 PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ-------------ELDEAVLRRFI 274 (389)
T ss_dssp SEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG-------------GCCHHHHTTCC
T ss_pred CeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch-------------hcCHHHHcCcc
Confidence 46889999988832211 1122333357789999999852 56789999999
Q ss_pred EEEEecccCCc
Q psy14566 328 LFFVLIDECNE 338 (532)
Q Consensus 328 Lif~l~D~~d~ 338 (532)
.++. ...++.
T Consensus 275 ~~i~-i~~p~~ 284 (389)
T 3vfd_A 275 KRVY-VSLPNE 284 (389)
T ss_dssp EEEE-CCCCCH
T ss_pred eEEE-cCCcCH
Confidence 6543 344544
No 25
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.17 E-value=0.0088 Score=60.29 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=46.3
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCC
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRF 74 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~ 74 (532)
|++|+++|||+|++++..+..|+.+||.+.+.+...|. ....+.+..|+| ++||..
T Consensus 143 a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~------------~~~~~~~~~li~----~~n~~~ 198 (350)
T 1g8p_A 143 ANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGL------------SIRHPARFVLVG----SGNPEE 198 (350)
T ss_dssp HTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTC------------CEEEECCEEEEE----EECSCS
T ss_pred cCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecce------------EEeeCCceEEEE----EeCCCC
Confidence 56899999999999999999999999999888877775 235567888887 578753
No 26
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.00 E-value=0.0042 Score=70.24 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=71.2
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeec-----cccchhh----hccceeeecccccccCCChHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQL-----ESLIRLS----EAMAKMECLDEYEFDKMDPHD 237 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~Rql-----ESliRLs----EA~Akv~~~de~~vd~~d~~~ 237 (532)
+.++.|.||+||+.+.+. +.+...+++ ..-+.+..-.. ++...+. .+.-.+.+.|| +++++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a-la~~l~~~~----~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDE--i~~~~~~~ 595 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA-LAESIFGDE----ESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDA--IEKAHPDV 595 (758)
T ss_dssp EEEEESCTTSSHHHHHHH-HHHHHHSCT----TCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEEC--GGGSCHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhcCCC----cceEEEechhcccccccccchhhHHHHhCCCeEEEEeC--ccccCHHH
Confidence 368999999999998888 444322211 11111111110 0011111 12223678888 88998888
Q ss_pred HHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCcccccc
Q psy14566 238 QVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVS 317 (532)
Q Consensus 238 ~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~ 317 (532)
...|+.+|+.+.+... . | ...-..++-||+|+|......+....... -.
T Consensus 596 ~~~Ll~~le~g~~~~~----------------------------~-g-~~~~~~~~~iI~ttn~~~~~~~~~~~~~~-~~ 644 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDS----------------------------K-G-RTVDFRNTILIMTSNVGASEKDKVMGELK-RA 644 (758)
T ss_dssp HHHHHHHHHHSBCC-----------------------------------CCBCTTCEEEEEESSSTTCCHHHHHHHH-HH
T ss_pred HHHHHHHhccCeEEcC----------------------------C-C-CEeccCCeEEEEeCCCChhhHHHHHHHHH-hh
Confidence 8888888888766543 1 2 22334678999999964332111001111 13
Q ss_pred CCCcccccccEEEE
Q psy14566 318 LSAPIMSRFDLFFV 331 (532)
Q Consensus 318 l~~~LLSRFDLif~ 331 (532)
|++.|++|||.++.
T Consensus 645 f~p~l~~Rl~~~i~ 658 (758)
T 3pxi_A 645 FRPEFINRIDEIIV 658 (758)
T ss_dssp SCHHHHTTSSEEEE
T ss_pred CCHHHHhhCCeEEe
Confidence 88999999998654
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.54 E-value=0.03 Score=57.35 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=38.2
Q ss_pred CCCceecccccccccccc-----------------cccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccc
Q psy14566 264 DNGVCCIDEFDNLSVTSS-----------------KAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRF 326 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~-----------------kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRF 326 (532)
..+|+||||+|.+..... -.|.....+.++.||||+|+.. .++++|++||
T Consensus 176 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~-------------~l~~~l~~Rf 242 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ-------------EIDEAARRRL 242 (357)
T ss_dssp CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG-------------GBCHHHHTTC
T ss_pred CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh-------------hCCHHHHhhC
Confidence 457899999998843221 1122223356889999999852 4678999999
Q ss_pred cEEEEecccCCc
Q psy14566 327 DLFFVLIDECNE 338 (532)
Q Consensus 327 DLif~l~D~~d~ 338 (532)
+..+. ...|+.
T Consensus 243 ~~~i~-i~~p~~ 253 (357)
T 3d8b_A 243 VKRLY-IPLPEA 253 (357)
T ss_dssp CEEEE-CCCCCH
T ss_pred ceEEE-eCCcCH
Confidence 96544 344543
No 28
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.84 E-value=0.021 Score=51.26 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=35.2
Q ss_pred Cceecccccccccccc-cc---cceeee-----cccceeecccCCCCCCCCCCCCccccccCCCcccccccEEE
Q psy14566 266 GVCCIDEFDNLSVTSS-KA---GVRATL-----NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFF 330 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~-ka---gi~~~l-----~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif 330 (532)
.+++|||++.+..... .. .+...| ..++.+++++|+.. ......++++|+|||+.|.
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~--------~~~~~~~~~~l~~R~~~i~ 182 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE--------YRQFIEKDKALERRFQQIL 182 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH--------HHHHTTTCHHHHHHEEEEE
T ss_pred eEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH--------HHHHHhccHHHHHhcCccc
Confidence 3899999999863221 10 111111 35678999998752 1123457899999999643
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.67 E-value=0.056 Score=53.69 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=17.4
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+....++
T Consensus 39 lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999888744444
No 30
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.64 E-value=0.039 Score=56.49 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCCceeccccccccccccc----------ccceee------ecccceeecccCCCCCCCCCCCCccccccCCCccccccc
Q psy14566 264 DNGVCCIDEFDNLSVTSSK----------AGVRAT------LNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFD 327 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~k----------agi~~~------l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFD 327 (532)
..+|+||||+|.+...... ..+... -+.++-||||+|+.. .|+++|++|||
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~-------------~ld~al~rRf~ 209 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-------------QLDSAIRRRFE 209 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG-------------GSCHHHHHTCC
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc-------------cCCHHHHcccC
Confidence 4568899999998644211 111111 145788999999852 57889999999
Q ss_pred EEEEecccCCch
Q psy14566 328 LFFVLIDECNEI 339 (532)
Q Consensus 328 Lif~l~D~~d~~ 339 (532)
..+. ...|+.+
T Consensus 210 ~~i~-i~~P~~~ 220 (355)
T 2qp9_X 210 RRIY-IPLPDLA 220 (355)
T ss_dssp EEEE-CCCCCHH
T ss_pred EEEE-eCCcCHH
Confidence 8764 4455544
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.58 E-value=0.04 Score=58.42 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=30.3
Q ss_pred cCCCceecccccccccccccccceeee-cccceeeccc--CCCCCCCCCCCCccccccCCCcccccccEE
Q psy14566 263 ADNGVCCIDEFDNLSVTSSKAGVRATL-NARASILAAA--NPIGGQYDRTKSLQHNVSLSAPIMSRFDLF 329 (532)
Q Consensus 263 ~~~~~~~~~e~~~~~~~~~kagi~~~l-~ar~svlAaa--np~~g~~~~~~~~~~ni~l~~~LLSRFDLi 329 (532)
+.++++||||++.+....- ..+.-.+ +..+.+++|+ ||. ..+.++|+|||..+
T Consensus 105 ~~~~iLfIDEI~~l~~~~q-~~LL~~le~~~v~lI~att~n~~-------------~~l~~aL~sR~~v~ 160 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQ-DAFLPHIEDGTITFIGATTENPS-------------FELNSALLSRARVY 160 (447)
T ss_dssp TCCEEEEEETTTCC-------CCHHHHHTTSCEEEEEESSCGG-------------GSSCHHHHTTEEEE
T ss_pred CCCcEEEEeChhhhCHHHH-HHHHHHHhcCceEEEecCCCCcc-------------cccCHHHhCceeEE
Confidence 4677999999999853221 0111111 1346677776 432 36778999999743
No 32
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.53 E-value=0.028 Score=59.45 Aligned_cols=62 Identities=23% Similarity=0.186 Sum_probs=39.8
Q ss_pred CCCceeccccccccccccccc----------ceee------ecccceeecccCCCCCCCCCCCCccccccCCCccccccc
Q psy14566 264 DNGVCCIDEFDNLSVTSSKAG----------VRAT------LNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFD 327 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~kag----------i~~~------l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFD 327 (532)
..+|.||||+|.+........ +... -+.++-||+|+|+.. .|+++|++|||
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~-------------~ld~al~rRf~ 293 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW-------------VLDSAIRRRFE 293 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG-------------GSCHHHHTTCC
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc-------------ccCHHHHhhcc
Confidence 346889999998843321110 1111 246788999999862 37789999999
Q ss_pred EEEEecccCCch
Q psy14566 328 LFFVLIDECNEI 339 (532)
Q Consensus 328 Lif~l~D~~d~~ 339 (532)
.++.+ .-|+.+
T Consensus 294 ~~i~i-~~P~~~ 304 (444)
T 2zan_A 294 KRIYI-PLPEAH 304 (444)
T ss_dssp EEEEC-CCCCHH
T ss_pred eEEEe-CCcCHH
Confidence 76544 555544
No 33
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.51 E-value=0.17 Score=52.45 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=35.1
Q ss_pred cccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHhhc
Q psy14566 457 RLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKK 531 (532)
Q Consensus 457 P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~~~ 531 (532)
|.+|++|.+.|..| .+|=.+|+|+.+|+-+-..++ ...++ +.++-..+|+|
T Consensus 337 ~~~~~~a~~~l~~~---------------~wpGNvreL~~~i~~~~~~~~---~~~i~------~~~l~~~~~~~ 387 (387)
T 1ny5_A 337 EGFTKSAQELLLSY---------------PWYGNVRELKNVIERAVLFSE---GKFID------RGELSCLVNSK 387 (387)
T ss_dssp CEECHHHHHHHHHS---------------CCTTHHHHHHHHHHHHHHHCC---SSEEC------HHHHHHHC---
T ss_pred CCCCHHHHHHHHhC---------------CCCcHHHHHHHHHHHHHHhCC---CCcCc------HHHCcHhhhcC
Confidence 56999999988754 156679999999998887764 23455 45566666654
No 34
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.28 E-value=0.57 Score=59.69 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=76.6
Q ss_pred hHhHHHHHHhhhccccccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEE-Eeec--cccch----hhhccceeee
Q psy14566 152 IKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRIT-TRQL--ESLIR----LSEAMAKMEC 224 (532)
Q Consensus 152 lR~~I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T-~Rql--ESliR----LsEA~Akv~~ 224 (532)
-|-|+...+.+....-.++.|.||+||..+.++ ..+.-.+ .. +.+- .-++ .++.+ ++++||= .|
T Consensus 632 dr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~-LA~~lg~---~~----v~~nc~e~ld~~~lg~~~~g~~~~Gaw-~~ 702 (2695)
T 4akg_A 632 LIGFATLTDSLHQKYGGCFFGPAGTGKTETVKA-FGQNLGR---VV----VVFNCDDSFDYQVLSRLLVGITQIGAW-GC 702 (2695)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHH-HHHTTTC---CC----EEEETTSSCCHHHHHHHHHHHHHHTCE-EE
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHH-HHHHhCC---cE----EEEECCCCCChhHhhHHHHHHHhcCCE-ee
Confidence 355555554444344467789999999999888 4443222 10 0000 0000 11222 3344543 56
Q ss_pred cccccccCCChHHHHHH-------HHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeec
Q psy14566 225 LDEYEFDKMDPHDQVAI-------HEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILA 297 (532)
Q Consensus 225 ~de~~vd~~d~~~~~~l-------~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlA 297 (532)
.|| ++.++.....+| .++|.....+|. -.|-...++..|.|++
T Consensus 703 ~DE--~nr~~~evLs~l~~~l~~i~~al~~~~~~i~----------------------------~~g~~i~l~~~~~vfi 752 (2695)
T 4akg_A 703 FDE--FNRLDEKVLSAVSANIQQIQNGLQVGKSHIT----------------------------LLEEETPLSPHTAVFI 752 (2695)
T ss_dssp EET--TTSSCHHHHHHHHHHHHHHHHHHHHTCSEEE----------------------------CSSSEEECCTTCEEEE
T ss_pred ehh--hhhcChHHHHHHHHHHHHHHHHHHcCCcEEe----------------------------eCCcEEecCCCceEEE
Confidence 688 888887654433 566666555554 5577788999999999
Q ss_pred ccCCCCCCCCCCCCccccccCCCcccccc
Q psy14566 298 AANPIGGQYDRTKSLQHNVSLSAPIMSRF 326 (532)
Q Consensus 298 aanp~~g~~~~~~~~~~ni~l~~~LLSRF 326 (532)
+.||- |.. --.||++|.+||
T Consensus 753 T~NPg---y~g------~~eLP~~Lk~~F 772 (2695)
T 4akg_A 753 TLNPG---YNG------RSELPENLKKSF 772 (2695)
T ss_dssp EECCC---SSS------SCCCCHHHHTTE
T ss_pred EeCCC---ccC------cccccHHHHhhe
Confidence 99994 322 236888899998
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.26 E-value=0.062 Score=54.00 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=41.2
Q ss_pred CCCceecccccccccccccc----------ccee------eecccceeecccCCCCCCCCCCCCccccccCCCccccccc
Q psy14566 264 DNGVCCIDEFDNLSVTSSKA----------GVRA------TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFD 327 (532)
Q Consensus 264 ~~~~~~~~e~~~~~~~~~ka----------gi~~------~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFD 327 (532)
..+|++|||+|.+......+ .... .-+.++-||||+|+.. .|+++|++|||
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~-------------~ld~al~~Rf~ 176 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-------------QLDSAIRRRFE 176 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG-------------GSCHHHHHHCC
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh-------------hCCHHHHcccC
Confidence 34688999999985432110 0000 1235678999999752 37899999999
Q ss_pred EEEEecccCCchhhccc
Q psy14566 328 LFFVLIDECNEILDYGE 344 (532)
Q Consensus 328 Lif~l~D~~d~~~D~~i 344 (532)
..+ ....|+.+.-..+
T Consensus 177 ~~i-~~~~p~~~~r~~i 192 (322)
T 3eie_A 177 RRI-YIPLPDLAARTTM 192 (322)
T ss_dssp EEE-ECCCCCHHHHHHH
T ss_pred eEE-EeCCCCHHHHHHH
Confidence 876 4444665443333
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.21 E-value=0.14 Score=51.56 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCceeccccccccccccccc----------cee------eecccceeecccCCCCCCCCCCCCccccccCCCcccccccE
Q psy14566 265 NGVCCIDEFDNLSVTSSKAG----------VRA------TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDL 328 (532)
Q Consensus 265 ~~~~~~~e~~~~~~~~~kag----------i~~------~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDL 328 (532)
.+|.+|||+|.+........ ... .-+.++-||||+|+.. .++++|++|||.
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~-------------~ld~al~rRf~~ 172 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW-------------VLDSAIRRRFEK 172 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT-------------TSCHHHHHTCCE
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc-------------cCCHHHHhhcCe
Confidence 45889999999854332110 111 1246788999999862 367899999997
Q ss_pred EEEecccCCch
Q psy14566 329 FFVLIDECNEI 339 (532)
Q Consensus 329 if~l~D~~d~~ 339 (532)
.+. ...|+.+
T Consensus 173 ~i~-i~~P~~~ 182 (322)
T 1xwi_A 173 RIY-IPLPEPH 182 (322)
T ss_dssp EEE-CCCCCHH
T ss_pred EEE-eCCcCHH
Confidence 654 4455543
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.94 E-value=0.72 Score=41.94 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=18.6
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+++.+..++
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999998855555
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.83 E-value=0.22 Score=50.34 Aligned_cols=48 Identities=13% Similarity=-0.001 Sum_probs=30.3
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCccccccccc
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCE 518 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~ 518 (532)
...+++++.+.|.++.-. -.+|.+..+++-+-..|...=++.||.+|+
T Consensus 276 ~~~~~~~~l~~l~~~~~~---------------G~~r~~~~ll~~a~~~A~~~~~~~It~~~v 323 (368)
T 3uk6_A 276 DVEMSEDAYTVLTRIGLE---------------TSLRYAIQLITAASLVCRKRKGTEVQVDDI 323 (368)
T ss_dssp TCCBCHHHHHHHHHHHHH---------------SCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred CCCCCHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 345677777766554311 137777788777777777766677775443
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.29 E-value=0.037 Score=49.59 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=35.9
Q ss_pred ceeccccccccccccccc-------ceeee-cccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCc
Q psy14566 267 VCCIDEFDNLSVTSSKAG-------VRATL-NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNE 338 (532)
Q Consensus 267 ~~~~~e~~~~~~~~~kag-------i~~~l-~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~ 338 (532)
+++|||++.+.......+ +...+ +.++.+++++|+.. ....+.++++|+|||+. +-...++.
T Consensus 118 vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~~--i~~~~p~~ 187 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE--------YRQYIEKDAALERRFQK--VFVAEPSV 187 (195)
T ss_dssp EEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH--------HHHHTTTCHHHHTTEEE--EECCCCCH
T ss_pred EEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH--------HHHHHhcCHHHHHHhce--eecCCCCH
Confidence 799999999853211100 00001 24677888888642 22334678999999984 34555543
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.14 E-value=0.044 Score=55.94 Aligned_cols=18 Identities=17% Similarity=-0.051 Sum_probs=15.9
Q ss_pred cccccCCchHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~ 184 (532)
+++|.|.||+||+.+.+.
T Consensus 53 ~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 378999999999998877
No 41
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.11 E-value=0.66 Score=49.16 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=28.0
Q ss_pred cceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCch
Q psy14566 292 RASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEI 339 (532)
Q Consensus 292 r~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~ 339 (532)
...+|+|+|+.. ....+.++++|++||.. +..+.|+.+
T Consensus 291 ~v~vI~at~~~e--------~~~~~~~~~al~~Rf~~--i~v~~p~~e 328 (468)
T 3pxg_A 291 ELQCIGATTLDE--------YRKYIEKDAALERRFQP--IQVDQPSVD 328 (468)
T ss_dssp SCEEEEECCTTT--------THHHHTTCSHHHHSEEE--EECCCCCHH
T ss_pred CEEEEecCCHHH--------HHHHhhcCHHHHHhCcc--ceeCCCCHH
Confidence 578999999863 12346788999999984 667777654
No 42
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.00 E-value=0.094 Score=66.68 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=31.6
Q ss_pred cccceeeecccceeecccCCC--CCCCCCCCCccccccCCCcccccccEEEEecccCCch
Q psy14566 282 KAGVRATLNARASILAAANPI--GGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEI 339 (532)
Q Consensus 282 kagi~~~l~ar~svlAaanp~--~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~ 339 (532)
+.+-..++ .++.++||+||. +||+ .|++.|++||-+| -.+.|+.+
T Consensus 1375 ~~~~~~~~-~~i~lIaA~Npp~~gGR~----------~l~~rllRrf~vi--~i~~P~~~ 1421 (2695)
T 4akg_A 1375 PENKWVTI-ERIHIVGACNPPTDPGRI----------PMSERFTRHAAIL--YLGYPSGK 1421 (2695)
T ss_dssp TTCCEEEE-ESEEEEEEECCTTSTTCC----------CCCHHHHTTEEEE--ECCCCTTT
T ss_pred CCCcEEEe-cCEEEEEecCCCccCCCc----------cCChhhhheeeEE--EeCCCCHH
Confidence 44444555 789999999998 5664 4788999999443 34556543
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.99 E-value=0.47 Score=45.49 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=28.6
Q ss_pred cchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHhh
Q psy14566 489 ITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRK 530 (532)
Q Consensus 489 iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~~ 530 (532)
.++|+|+.+++-+.+.|..+-++.|| ..++++++++
T Consensus 216 ~~~~dl~~l~~~a~~~a~~~~~~~i~------~~~~~~a~~~ 251 (257)
T 1lv7_A 216 FSGADLANLVNEAALFAARGNKRVVS------MVEFEKAKDK 251 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBC------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccc------HHHHHHHHHH
Confidence 58999999999999998877777888 4666666654
No 44
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=90.70 E-value=0.037 Score=54.91 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=30.3
Q ss_pred eeeec-ccCCCcccchhHHHHHhhhhccccccCcccccccccccccccccccceeeeecccccCCCCCCCCCCcchhchH
Q psy14566 8 CCIDE-FDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSA 86 (532)
Q Consensus 8 ccIDE-fDkm~~~dr~~iheaMeqqtisiaKagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~~~~~l~~ 86 (532)
.+-|+ +|++.||||+.|.|+..... +++ ...++++|.|++|...+..++.
T Consensus 203 ~l~~dLvd~~~PGDrV~vtGI~~~~~----~~~---------------~~~~~~~l~a~~I~~~~~~~~~---------- 253 (279)
T 1ltl_A 203 VLEDDLVDTLTPGDIVRVTGTLRTVR----DER---------------TKRFKNFIYGNYTEFLEQEFEE---------- 253 (279)
T ss_dssp EEEGGGTTCCCTTCEEEEEEEEEEEE----ETT---------------TTEEEEEEEEEECCBC----------------
T ss_pred EEcccccCccCCCCEEEEEEEEEEee----CCC---------------CceEEEEEEEEEEEEecCcccc----------
Confidence 34444 89999999999988753221 111 2347999999988655443221
Q ss_pred HHhhccCCHHHHHHHHhHhhchhhHHHHH
Q psy14566 87 ELMKKHMTESEWNKIYEMSRDRNLYQNLT 115 (532)
Q Consensus 87 ~~l~~~~~~srfDlI~~l~~d~~i~~~l~ 115 (532)
..+|.++.+.|..+++++++|+.|+
T Consensus 254 ----~~~t~ed~~~i~~ls~~~~iy~~L~ 278 (279)
T 1ltl_A 254 ----LQISEEDEEKIKELAGDPNIYEKII 278 (279)
T ss_dssp -----------------------------
T ss_pred ----CCCCHHHHHHHHHHhcCCCHHHHhh
Confidence 1245567778889999999999875
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.27 E-value=1.5 Score=40.57 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=18.9
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.++.|.||+||+.+++.+..++.
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999988555554
No 46
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.85 E-value=0.21 Score=48.11 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=17.8
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.+|.|.||+||+.+.+.+..++
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6889999999999988844443
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.30 E-value=0.13 Score=49.17 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHhhhhccCccccccccc
Q psy14566 489 ITTRQLESLIRLSEAMAKMECLDELGKCCE 518 (532)
Q Consensus 489 iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~ 518 (532)
.+.|.|+.+++-+...|..+-+..|+.+|+
T Consensus 213 ~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~ 242 (262)
T 2qz4_A 213 FSGADIANICNEAALHAAREGHTSVHTLNF 242 (262)
T ss_dssp CCHHHHHHHHHHHHTC--------CCBCCH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 466888888888877777666677775544
No 48
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.61 E-value=0.25 Score=43.25 Aligned_cols=24 Identities=8% Similarity=-0.057 Sum_probs=18.5
Q ss_pred cccccccCCchHHHHHHHHHHHHHh
Q psy14566 165 SLFPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 165 ~~~pll~gdp~~~ksqlL~~~y~~L 189 (532)
...+++.|.||+||+.+.+. ....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~-i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARY-LHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHH-HHHS
T ss_pred CCCEEEECCCCCCHHHHHHH-HHHh
Confidence 34478999999999988887 4443
No 49
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.36 E-value=3.3 Score=41.38 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.6
Q ss_pred cccccCCchHHHHHHHHHHHHHh
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~L 189 (532)
+.++.|.||+||+.+++.....+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36889999999999999854444
No 50
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.74 E-value=0.15 Score=58.24 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=17.9
Q ss_pred cccccCCchHHHHHHHHHHHHHh
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~L 189 (532)
..++.|.||+||+.+.+.....+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999888844444
No 51
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.77 E-value=0.31 Score=48.58 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=29.3
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
|++|+++|||+|.|.+..+..|+.+|+.+.+.
T Consensus 95 a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~ 126 (304)
T 1ojl_A 95 ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQ 126 (304)
T ss_dssp HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCC
T ss_pred cCCCEEEEeccccCCHHHHHHHHHHHhcCEee
Confidence 68999999999999999999999999988764
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.58 E-value=0.31 Score=47.02 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=29.2
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
|++|+++|||+|+|.+..+..|..+|+.+.+.
T Consensus 99 a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~ 130 (265)
T 2bjv_A 99 ADGGTLFLDELATAPMMVQEKLLRVIEYGELE 130 (265)
T ss_dssp TTTSEEEEESGGGSCHHHHHHHHHHHHHCEEC
T ss_pred cCCcEEEEechHhcCHHHHHHHHHHHHhCCee
Confidence 67899999999999999999999999988763
No 53
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.79 E-value=0.35 Score=49.34 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=26.1
Q ss_pred CCCceeeeecccCCCcc--------------cchhHHHHHhhhhccccccC
Q psy14566 3 ADNGVCCIDEFDKMDPH--------------DQVAIHEAMEQQTISIAKGD 39 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~--------------dr~~iheaMeqqtisiaKag 39 (532)
+.+||++|||+|+|.+. .+..|+.+||.+.+++...|
T Consensus 136 ~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~ 186 (376)
T 1um8_A 136 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKG 186 (376)
T ss_dssp HTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC-----
T ss_pred cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceeccccc
Confidence 47899999999999987 77889999998887776655
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.30 E-value=0.23 Score=49.69 Aligned_cols=22 Identities=14% Similarity=0.159 Sum_probs=18.1
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+++.+...+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999988844444
No 55
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.86 E-value=2.7 Score=44.23 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=35.9
Q ss_pred ceecccccccccccccccc------eeee------------cccceeecccCCCCCCCCCCCCccccccCCCcccc--cc
Q psy14566 267 VCCIDEFDNLSVTSSKAGV------RATL------------NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RF 326 (532)
Q Consensus 267 ~~~~~e~~~~~~~~~kagi------~~~l------------~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RF 326 (532)
|.||||+|.+...+...|- ..++ ..++-||||+|-.. .|+++|+. ||
T Consensus 277 IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~-------------~LDpAllRpGRf 343 (437)
T 4b4t_L 277 IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD-------------TLDPALLRPGRL 343 (437)
T ss_dssp EEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT-------------SSCTTTTSTTSE
T ss_pred eeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch-------------hhCHHHhCCCcc
Confidence 6789999988655432221 1111 23567999998542 47889986 49
Q ss_pred cEEEEecccCCc
Q psy14566 327 DLFFVLIDECNE 338 (532)
Q Consensus 327 DLif~l~D~~d~ 338 (532)
|..+-+ +-||.
T Consensus 344 D~~I~i-~lPd~ 354 (437)
T 4b4t_L 344 DRKVEI-PLPNE 354 (437)
T ss_dssp EEEECC-CCCCH
T ss_pred ceeeec-CCcCH
Confidence 987543 45554
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.56 E-value=2.1 Score=44.95 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=36.0
Q ss_pred ccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCch
Q psy14566 458 LIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNT 521 (532)
Q Consensus 458 ~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~ 521 (532)
.+++++.+.|.++-.. -.+|....|++-+.+.|.++=+..||++|+..+
T Consensus 385 ~~~~~~~~~i~~~a~~---------------g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 385 NISEEALNHLGEIGTK---------------TTLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp CBCHHHHHHHHHHHHH---------------SCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHccC---------------CCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 4778888777664321 148888999999988998888889997665443
No 57
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=83.25 E-value=0.75 Score=48.55 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=25.5
Q ss_pred ccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHH
Q psy14566 454 VIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIR 499 (532)
Q Consensus 454 ~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIR 499 (532)
.+.=.+|++|...|.+.|..+..... .+-+|-|+++|-
T Consensus 364 ~~~l~~~~~al~~i~~~a~~~~~~t~--------~~GaR~L~~~ie 401 (444)
T 1g41_A 364 GVNIAFTTDAVKKIAEAAFRVNEKTE--------NIGARRLHTVME 401 (444)
T ss_dssp TCEEEECHHHHHHHHHHHHHHHHHSC--------CCGGGHHHHHHH
T ss_pred CceEEECHHHHHHHHHHHHHhccCCc--------cCCchHHHHHHH
Confidence 36667999999999998876533221 145777666653
No 58
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.25 E-value=1.4 Score=46.84 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=36.4
Q ss_pred Cceeccccccccccccc--ccc-----------eeee-----cccceeecccCCCCCCCCCCCCccccccCCCcccc--c
Q psy14566 266 GVCCIDEFDNLSVTSSK--AGV-----------RATL-----NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--R 325 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~k--agi-----------~~~l-----~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--R 325 (532)
.|.||||+|.+...+.. .|. ...+ +..+.||||+|+.. .+++.|+. |
T Consensus 110 ~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~-------------~Ld~allR~gR 176 (476)
T 2ce7_A 110 CIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD-------------ILDPALLRPGR 176 (476)
T ss_dssp EEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred CEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh-------------hhchhhcccCc
Confidence 47899999998654321 111 0011 35678999999852 35677775 9
Q ss_pred ccEEEEecccCCch
Q psy14566 326 FDLFFVLIDECNEI 339 (532)
Q Consensus 326 FDLif~l~D~~d~~ 339 (532)
||..+. .+.|+.+
T Consensus 177 Fd~~i~-i~~Pd~~ 189 (476)
T 2ce7_A 177 FDKKIV-VDPPDML 189 (476)
T ss_dssp SCEEEE-CCCCCHH
T ss_pred ceeEee-cCCCCHH
Confidence 998654 4456643
No 59
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.07 E-value=2.4 Score=44.52 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=37.1
Q ss_pred ceecccccccccccccccc------ee------------eecccceeecccCCCCCCCCCCCCccccccCCCcccc--cc
Q psy14566 267 VCCIDEFDNLSVTSSKAGV------RA------------TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RF 326 (532)
Q Consensus 267 ~~~~~e~~~~~~~~~kagi------~~------------~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RF 326 (532)
|.||||+|.+...+..++- .. .-+.+.-||||+|-.. .|+++|+. ||
T Consensus 278 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd-------------~LDpALlRpGRf 344 (437)
T 4b4t_I 278 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE-------------TLDPALIRPGRI 344 (437)
T ss_dssp EEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST-------------TCCTTSSCTTTE
T ss_pred EEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh-------------hcCHHHhcCCce
Confidence 6789999988555422221 00 1123567999999652 58899997 99
Q ss_pred cEEEEecccCCch
Q psy14566 327 DLFFVLIDECNEI 339 (532)
Q Consensus 327 DLif~l~D~~d~~ 339 (532)
|..+ -.+-||.+
T Consensus 345 D~~I-~v~lPd~~ 356 (437)
T 4b4t_I 345 DRKI-LFENPDLS 356 (437)
T ss_dssp EEEE-CCCCCCHH
T ss_pred eEEE-EcCCcCHH
Confidence 9874 34556543
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.06 E-value=0.96 Score=48.29 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=37.7
Q ss_pred Cceeccccccccccccccc----------cee-----eecccceeecccCCCCCCCCCCCCccccccCCCcccc--cccE
Q psy14566 266 GVCCIDEFDNLSVTSSKAG----------VRA-----TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDL 328 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~kag----------i~~-----~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDL 328 (532)
++.|+||+|.+.......+ +.. .-+..+-|+||+|+.. .|++.|++ |||.
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~-------------~Ld~al~r~gRf~~ 365 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-------------SIDPALRRFGRFDR 365 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG-------------GBCGGGGSTTSSCE
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc-------------ccCHHHhCCCcCce
Confidence 5889999988754332111 111 1245788999999852 36789998 9998
Q ss_pred EEEecccCCc
Q psy14566 329 FFVLIDECNE 338 (532)
Q Consensus 329 if~l~D~~d~ 338 (532)
++-+ ..|+.
T Consensus 366 ~i~i-~~P~~ 374 (489)
T 3hu3_A 366 EVDI-GIPDA 374 (489)
T ss_dssp EEEC-CCCCH
T ss_pred EEEe-CCCCH
Confidence 7544 34443
No 61
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=81.99 E-value=4.9 Score=39.55 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=36.4
Q ss_pred CCCceecccccccc-cccccccceee---ecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCch
Q psy14566 264 DNGVCCIDEFDNLS-VTSSKAGVRAT---LNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEI 339 (532)
Q Consensus 264 ~~~~~~~~e~~~~~-~~~~kagi~~~---l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~ 339 (532)
+.++.+|||++.+. ... ...+... .+..+.+++++|+.. .++++|.|||.. +-...++.+
T Consensus 105 ~~~vliiDEi~~l~~~~~-~~~L~~~le~~~~~~~iI~~~n~~~-------------~l~~~l~sR~~~--i~~~~~~~~ 168 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAES-QRHLRSFMEAYSSNCSIIITANNID-------------GIIKPLQSRCRV--ITFGQPTDE 168 (324)
T ss_dssp CEEEEEEESCCCGGGHHH-HHHHHHHHHHHGGGCEEEEEESSGG-------------GSCTTHHHHSEE--EECCCCCHH
T ss_pred CCeEEEEECCcccCcHHH-HHHHHHHHHhCCCCcEEEEEeCCcc-------------ccCHHHHhhCcE--EEeCCCCHH
Confidence 44577777777775 221 1111111 235688999999853 488999999963 344555543
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.40 E-value=0.86 Score=58.79 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=33.3
Q ss_pred cccceeeecccceeecccCCCC--CCCCCCCCccccccCCCcccccccEEEEecccCCchhhccc
Q psy14566 282 KAGVRATLNARASILAAANPIG--GQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGE 344 (532)
Q Consensus 282 kagi~~~l~ar~svlAaanp~~--g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~i 344 (532)
+.+-...+ ..+.++||+||.+ |++ .||+.|++||-++ -.+.|+.+.=..|
T Consensus 1413 ~~~~~~~i-~d~~~vaamnPp~~gGr~----------~l~~Rf~r~F~vi--~i~~ps~esL~~I 1464 (3245)
T 3vkg_A 1413 SDHTWIKL-DKIQFVGACNPPTDAGRV----------QLTHRFLRHAPIL--LVDFPSTSSLTQI 1464 (3245)
T ss_dssp TTTEEEEE-SSEEEEEEECCTTSTTCC----------CCCHHHHTTCCEE--ECCCCCHHHHHHH
T ss_pred CCCeEEEe-cCeEEEEEcCCCCCCCCc----------cCCHHHHhhceEE--EeCCCCHHHHHHH
Confidence 33333444 6888999999984 543 4889999999775 3466665443333
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.37 E-value=0.7 Score=40.29 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=27.3
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhh
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQT 32 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqt 32 (532)
|++|+.+|||+|.+++..+..+..+|+.+.
T Consensus 74 a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~ 103 (143)
T 3co5_A 74 AEGGVLYVGDIAQYSRNIQTGITFIIGKAE 103 (143)
T ss_dssp TTTSEEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEeChHHCCHHHHHHHHHHHHhCC
Confidence 678999999999999999999999998763
No 64
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.12 E-value=3.6 Score=43.58 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=35.9
Q ss_pred ceecccccccccccccccc------ee------------eecccceeecccCCCCCCCCCCCCccccccCCCcccc--cc
Q psy14566 267 VCCIDEFDNLSVTSSKAGV------RA------------TLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RF 326 (532)
Q Consensus 267 ~~~~~e~~~~~~~~~kagi------~~------------~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RF 326 (532)
|.|+||+|.+...+...|- .. .-+.+.-||||+|-.. .|.++|+- ||
T Consensus 305 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd-------------~LDpALlRpGRF 371 (467)
T 4b4t_H 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN-------------TLDPALLRPGRI 371 (467)
T ss_dssp EEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT-------------SBCHHHHSTTTC
T ss_pred eEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc-------------cCChhhhccccc
Confidence 6789999988655432221 00 1124567899998542 57788875 99
Q ss_pred cEEEEecccCCc
Q psy14566 327 DLFFVLIDECNE 338 (532)
Q Consensus 327 DLif~l~D~~d~ 338 (532)
|..+-+ +-||.
T Consensus 372 D~~I~i-~lPd~ 382 (467)
T 4b4t_H 372 DRKVEF-SLPDL 382 (467)
T ss_dssp CEEECC-CCCCH
T ss_pred cEEEEe-CCcCH
Confidence 987533 44554
No 65
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.01 E-value=2.3 Score=48.18 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=38.5
Q ss_pred Cceeccccccccccccccc------ceee---------ecccceeecccCCCCCCCCCCCCccccccCCCcccc--cccE
Q psy14566 266 GVCCIDEFDNLSVTSSKAG------VRAT---------LNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDL 328 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~kag------i~~~---------l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDL 328 (532)
.|.||||+|.+-..+...+ +..+ -+.++.||||+|-.. .|+++|+. |||.
T Consensus 299 sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d-------------~LD~ALrR~GRFd~ 365 (806)
T 3cf2_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-------------SIDPALRRFGRFDR 365 (806)
T ss_dssp EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT-------------TSCTTTTSTTSSCE
T ss_pred eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChh-------------hcCHHHhCCcccce
Confidence 4789999999865443221 1111 134678999998652 47888887 9998
Q ss_pred EEEecccCCch
Q psy14566 329 FFVLIDECNEI 339 (532)
Q Consensus 329 if~l~D~~d~~ 339 (532)
.+-+ .-||..
T Consensus 366 ~I~i-~~Pd~~ 375 (806)
T 3cf2_A 366 EVDI-GIPDAT 375 (806)
T ss_dssp EEEC-CCCCHH
T ss_pred EEec-CCCCHH
Confidence 7543 445543
No 66
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=79.92 E-value=0.81 Score=47.18 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.9
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.++||++.|++..+..|..+|+.+++.
T Consensus 229 ~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~ 261 (387)
T 1ny5_A 229 LADGGTLFLDEIGELSLEAQAKLLRVIESGKFY 261 (387)
T ss_dssp HTTTSEEEEESGGGCCHHHHHHHHHHHHHSEEC
T ss_pred eCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEE
Confidence 489999999999999999999999999998876
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.33 E-value=0.8 Score=51.40 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccccc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAK 37 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaK 37 (532)
+++||++|||+||+.+.....|..+||.+.++...
T Consensus 556 ~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~ 590 (758)
T 1r6b_X 556 HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN 590 (758)
T ss_dssp CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT
T ss_pred CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCC
Confidence 56899999999999999999999999999887643
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.10 E-value=0.69 Score=46.40 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=19.0
Q ss_pred cccccCCchHHHHHHHHHHHHHhc
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
|.++.|.||+||+.+++.+...+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 368899999999999998544443
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.83 E-value=2.5 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=18.9
Q ss_pred cccccCCchHHHHHHHHHHHHHhc
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
..++.|.||+||+.+++.....+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 357889999999999988555554
No 70
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.11 E-value=0.38 Score=47.16 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=34.0
Q ss_pred cCCCceecccccccccccccc--cceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccE
Q psy14566 263 ADNGVCCIDEFDNLSVTSSKA--GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDL 328 (532)
Q Consensus 263 ~~~~~~~~~e~~~~~~~~~ka--gi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDL 328 (532)
+..+|+++||++.+......+ ...-..+..+.++.++|+.. .+.++|.|||..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~-------------~l~~~l~sr~~~ 155 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS-------------RIIEPIQSRCAV 155 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG-------------GSCHHHHTTCEE
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh-------------hcchHHHhhCeE
Confidence 346789999999885322100 11122346788888888642 567899999973
No 71
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=77.35 E-value=0.86 Score=44.69 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=19.0
Q ss_pred cccccCCchHHHHHHHHHHHHHh
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~L 189 (532)
+.++.|.||+||+.+.+.+...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 47889999999999988855554
No 72
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.63 E-value=1.2 Score=43.69 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhcccc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisia 36 (532)
+++|+++|||+|+|++..+..|..+|+.+.+...
T Consensus 118 ~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 118 RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS 151 (311)
T ss_dssp CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT
T ss_pred CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC
Confidence 4679999999999999999999999999988743
No 73
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=76.00 E-value=0.81 Score=39.93 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=24.5
Q ss_pred CCCceeeeecccCCCcccchhHHHHH
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAM 28 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaM 28 (532)
|++|+.+|||+|.+++..+..+..+|
T Consensus 75 a~~g~l~ldei~~l~~~~q~~Ll~~l 100 (145)
T 3n70_A 75 AQGGTLVLSHPEHLTREQQYHLVQLQ 100 (145)
T ss_dssp HTTSCEEEECGGGSCHHHHHHHHHHH
T ss_pred cCCcEEEEcChHHCCHHHHHHHHHHH
Confidence 68899999999999999999999998
No 74
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.09 E-value=1 Score=47.32 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=25.2
Q ss_pred ccceeecccCCCCCCCCCCCCccccccCCCcccc--cccEEEEecccCCch
Q psy14566 291 ARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDLFFVLIDECNEI 339 (532)
Q Consensus 291 ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~ 339 (532)
.+.-||||+|-.. .|+++|+. |||..+-+ +-||.+
T Consensus 319 ~~ViVIaaTNrp~-------------~LD~AllRpGRfD~~I~i-~lPd~~ 355 (434)
T 4b4t_M 319 DRVKVLAATNRVD-------------VLDPALLRSGRLDRKIEF-PLPSED 355 (434)
T ss_dssp CSSEEEEECSSCC-------------CCCTTTCSTTSEEEEEEC-CCCCHH
T ss_pred CCEEEEEeCCCch-------------hcCHhHhcCCceeEEEEe-CCcCHH
Confidence 3567999998652 57899988 99988653 456543
No 75
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=75.02 E-value=1.1 Score=44.69 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=29.8
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIA 36 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisia 36 (532)
++++|+++|||+|.|.+..+..|+.+|+.+.+.+.
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~ 138 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDII 138 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---
T ss_pred ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhh
Confidence 47899999999999999999999999999887654
No 76
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=73.41 E-value=1.3 Score=38.56 Aligned_cols=19 Identities=5% Similarity=-0.195 Sum_probs=15.3
Q ss_pred ccccccCCchHHHHHHHHH
Q psy14566 166 LFPSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 166 ~~pll~gdp~~~ksqlL~~ 184 (532)
..+++.|.||+||+.+.+.
T Consensus 28 ~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp SCEEEEEETTCCHHHHHGG
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4478899999999877655
No 77
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.11 E-value=0.95 Score=47.56 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=25.5
Q ss_pred cceeecccCCCCCCCCCCCCccccccCCCcccc--cccEEEEecccCCch
Q psy14566 292 RASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDLFFVLIDECNEI 339 (532)
Q Consensus 292 r~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~ 339 (532)
+.-||||||-.. .|+++|+. |||..+-+-+-||.+
T Consensus 311 ~v~vI~aTN~~~-------------~LD~AllRpGRfd~~I~~p~lPd~~ 347 (428)
T 4b4t_K 311 NVKVIMATNRAD-------------TLDPALLRPGRLDRKIEFPSLRDRR 347 (428)
T ss_dssp SEEEEEEESCSS-------------SCCHHHHSSSSEEEEEECCSSCCHH
T ss_pred CEEEEEecCChh-------------hcChhhhcCCcceEEEEcCCCCCHH
Confidence 457899998542 57889986 999877665666654
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=73.11 E-value=1.6 Score=44.69 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=30.9
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhcc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTIS 34 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtis 34 (532)
.|+||+.++||++.|++.-+..|..+||.+++.
T Consensus 220 ~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~ 252 (368)
T 3dzd_A 220 LADQGTLFLDEVGELDQRVQAKLLRVLETGSFT 252 (368)
T ss_dssp HTTTSEEEEETGGGSCHHHHHHHHHHHHHSEEC
T ss_pred hcCCCeEEecChhhCCHHHHHHHHHHHHhCCcc
Confidence 489999999999999999999999999998876
No 79
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.93 E-value=2.1 Score=41.69 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=18.6
Q ss_pred ccccCCchHHHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~L 189 (532)
.++.|.||+||+.+.+.+...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7889999999999988855555
No 80
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.60 E-value=0.39 Score=46.55 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.9
Q ss_pred ccccCCchHHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVDM 185 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~ 185 (532)
.++.|.||+||+.+.+.+
T Consensus 67 vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 688899999999988873
No 81
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.58 E-value=1.2 Score=46.30 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=24.1
Q ss_pred ccceeecccCCCCCCCCCCCCccccccCCCcccc--cccEEEEecccCCc
Q psy14566 291 ARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--RFDLFFVLIDECNE 338 (532)
Q Consensus 291 ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~ 338 (532)
.+.-||||+|-.. .|+++|+. |||..+-+ +-||.
T Consensus 286 ~~V~vIaATNrpd-------------~LDpAllRpGRfD~~I~i-~lPd~ 321 (405)
T 4b4t_J 286 KNIKIIMATNRLD-------------ILDPALLRPGRIDRKIEF-PPPSV 321 (405)
T ss_dssp CCEEEEEEESCSS-------------SSCHHHHSTTSSCCEEEC-CCCCH
T ss_pred CCeEEEeccCChh-------------hCCHhHcCCCcCceEEEc-CCcCH
Confidence 3557899999652 57889986 99987653 44554
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.03 E-value=1.2 Score=50.45 Aligned_cols=22 Identities=14% Similarity=-0.118 Sum_probs=17.7
Q ss_pred cccccCCchHHHHHHHHHHHHHh
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQL 189 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~L 189 (532)
+.+|+|.||++|+.+.+. +...
T Consensus 513 ~vLL~GppGtGKT~Laka-la~~ 534 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKA-IANE 534 (806)
T ss_dssp CCCCBCCTTSSHHHHHHH-HHHH
T ss_pred eeEEECCCCCCHHHHHHH-HHHH
Confidence 468999999999998888 4443
No 83
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=67.24 E-value=3.9 Score=37.25 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCCCCCC------------------CceeE-EEeeccccchhhhccc--------
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSK------------------ATWRI-TTRQLESLIRLSEAMA-------- 220 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~------------------~glt~-T~RqlESliRLsEA~A-------- 220 (532)
.++.|.||+||+.+++.+...+.......... -.+.. .....+.+..+.+...
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 127 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCc
Q ss_pred eeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccC
Q psy14566 221 KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAAN 300 (532)
Q Consensus 221 kv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaan 300 (532)
.+.++|+ ++.++......|...|+. . +..+.++.++|
T Consensus 128 ~vlviDe--~~~l~~~~~~~l~~~l~~----------------------------------~-------~~~~~~i~~t~ 164 (250)
T 1njg_A 128 KVYLIDE--VHMLSRHSFNALLKTLEE----------------------------------P-------PEHVKFLLATT 164 (250)
T ss_dssp EEEEEET--GGGSCHHHHHHHHHHHHS----------------------------------C-------CTTEEEEEEES
T ss_pred eEEEEEC--cccccHHHHHHHHHHHhc----------------------------------C-------CCceEEEEEeC
Q ss_pred CCCCCCCCCCCccccccCCCcccccccEEEE
Q psy14566 301 PIGGQYDRTKSLQHNVSLSAPIMSRFDLFFV 331 (532)
Q Consensus 301 p~~g~~~~~~~~~~ni~l~~~LLSRFDLif~ 331 (532)
... .+++.+++||..+.+
T Consensus 165 ~~~-------------~~~~~l~~r~~~i~l 182 (250)
T 1njg_A 165 DPQ-------------KLPVTILSRCLQFHL 182 (250)
T ss_dssp CGG-------------GSCHHHHTTSEEEEC
T ss_pred ChH-------------hCCHHHHHHhhhccC
No 84
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=67.08 E-value=2.8 Score=35.67 Aligned_cols=29 Identities=48% Similarity=0.966 Sum_probs=23.2
Q ss_pred cchhhHHHHHHhhhccchhhHHHHhhhhh
Q psy14566 421 LHKSEVVAWYLEQIGDQIENEEELLERKT 449 (532)
Q Consensus 421 ~~~~~~~~~~l~~i~~~i~~~~~ll~kyi 449 (532)
..+++++.|||+++.+.+..|.++.....
T Consensus 36 ~~~~eLv~WYLeq~e~~i~seeel~~e~~ 64 (114)
T 2klq_A 36 LKRSELVNWYLKEIESEIDSEEELINKKR 64 (114)
T ss_dssp BCHHHHHHHHHHHHTTTCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34678999999999999998888765543
No 85
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=65.90 E-value=2.6 Score=42.25 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=18.4
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.++.|.||+||+.+.+.+...+-
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHHHHh
Confidence 58889999999999888555553
No 86
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=64.29 E-value=2.6 Score=41.40 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=30.4
Q ss_pred cCCCceeeeecccCCCcccchhHHHHHhhhhccc
Q psy14566 2 LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI 35 (532)
Q Consensus 2 lad~GvccIDEfDkm~~~dr~~iheaMeqqtisi 35 (532)
++++|+++|||+|.|.+..+..++.+|+...+.+
T Consensus 88 ~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~ 121 (324)
T 1hqc_A 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121 (324)
T ss_dssp CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEE
T ss_pred ccCCCEEEEECCcccccchHHHHHHHHHhhhhHH
Confidence 5789999999999999989999999999887654
No 87
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.84 E-value=4 Score=45.70 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccccc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAK 37 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisiaK 37 (532)
+++||.+|||+|+|.+.-+..|..+|+.+.+....
T Consensus 578 ~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~ 612 (758)
T 3pxi_A 578 KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSK 612 (758)
T ss_dssp CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC---
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCC
Confidence 46799999999999999999999999999887643
No 88
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=60.80 E-value=14 Score=37.06 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.6
Q ss_pred ccccCCchHHHHHHHHHHHHHhcc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQ 191 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~ 191 (532)
+++.|.||+||+.+.+....+|..
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 688999999999999997777754
No 89
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=60.39 E-value=3.4 Score=42.14 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=27.8
Q ss_pred ccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhh
Q psy14566 456 ERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAK 506 (532)
Q Consensus 456 ~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AK 506 (532)
.+.+|++|.+.|..| ++|=-+|+|+.+|+-+-..+.
T Consensus 327 ~~~~~~~a~~~L~~~---------------~wpGNvreL~n~i~~~~~~~~ 362 (368)
T 3dzd_A 327 CFELSEETKEYLMKQ---------------EWKGNVRELKNLIERAVILCE 362 (368)
T ss_dssp CCCBCHHHHHHHHTC---------------CCTTHHHHHHHHHHHHHHTCC
T ss_pred CCCcCHHHHHHHHhC---------------CCCcHHHHHHHHHHHHHHhCC
Confidence 367999999988633 256679999999998876654
No 90
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=57.19 E-value=7.2 Score=38.40 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=18.8
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.++.|.||+||+.+++.....+.
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67889999999999998555554
No 91
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=56.44 E-value=19 Score=35.64 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=18.4
Q ss_pred ccccCCchHHHHHHHHHHHHHhc
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLR 190 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr 190 (532)
.++.|.||+||+.+++.+...+.
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999988555553
No 92
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=54.66 E-value=2.1 Score=43.31 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=25.1
Q ss_pred CCCceeeeecccCCCcc--------------cchhHHHHHhhhhccccc
Q psy14566 3 ADNGVCCIDEFDKMDPH--------------DQVAIHEAMEQQTISIAK 37 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~--------------dr~~iheaMeqqtisiaK 37 (532)
+++||.+|||+|+|.+. -+..|..+||...+.+..
T Consensus 115 ~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 115 AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------
T ss_pred cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccC
Confidence 46799999999999987 688899999955555533
No 93
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.87 E-value=29 Score=34.12 Aligned_cols=116 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred cccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEE----------------Eeeccccchhhhc------------
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRIT----------------TRQLESLIRLSEA------------ 218 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T----------------~RqlESliRLsEA------------ 218 (532)
|.++.|.||+||+.+++....++.........-.+.... .-.+.....-...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 117 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 117 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHH
Q ss_pred ----------------cceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceeccccccccccccc
Q psy14566 219 ----------------MAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSK 282 (532)
Q Consensus 219 ----------------~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~k 282 (532)
..++.+.|| ++.+|...+.+|...|+.
T Consensus 118 ~~~~~~~~~~ls~l~~~~~vlilDE--~~~L~~~~~~~L~~~le~----------------------------------- 160 (354)
T 1sxj_E 118 QMEQVDFQDSKDGLAHRYKCVIINE--ANSLTKDAQAALRRTMEK----------------------------------- 160 (354)
T ss_dssp TTTC------------CCEEEEEEC--TTSSCHHHHHHHHHHHHH-----------------------------------
T ss_pred HhccccccccccccCCCCeEEEEeC--ccccCHHHHHHHHHHHHh-----------------------------------
Q ss_pred ccceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchh
Q psy14566 283 AGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEIL 340 (532)
Q Consensus 283 agi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~ 340 (532)
.+..+.+|.++|-... ++++|.||+ ..+-...++.+.
T Consensus 161 ------~~~~~~~Il~t~~~~~-------------l~~~l~sR~--~~~~~~~~~~~~ 197 (354)
T 1sxj_E 161 ------YSKNIRLIMVCDSMSP-------------IIAPIKSQC--LLIRCPAPSDSE 197 (354)
T ss_dssp ------STTTEEEEEEESCSCS-------------SCHHHHTTS--EEEECCCCCHHH
T ss_pred ------hcCCCEEEEEeCCHHH-------------HHHHHHhhc--eEEecCCcCHHH
No 94
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=50.97 E-value=5.4 Score=38.56 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=26.0
Q ss_pred CCceeeeecccCCCccc------------chhHHHHHhhhhcc
Q psy14566 4 DNGVCCIDEFDKMDPHD------------QVAIHEAMEQQTIS 34 (532)
Q Consensus 4 d~GvccIDEfDkm~~~d------------r~~iheaMeqqtis 34 (532)
.+||++|||+|++.+.. +..|+..||..++.
T Consensus 116 ~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp HHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 36899999999999876 67889999977654
No 95
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=50.51 E-value=7.9 Score=44.02 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI 35 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisi 35 (532)
+.+||.+|||+|+|.+.....|..+|+.+.+.-
T Consensus 659 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~ 691 (854)
T 1qvr_A 659 RPYSVILFDEIEKAHPDVFNILLQILDDGRLTD 691 (854)
T ss_dssp CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECC
T ss_pred CCCeEEEEecccccCHHHHHHHHHHhccCceEC
Confidence 357899999999999999999999999998773
No 96
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.92 E-value=6.3 Score=41.38 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhhhccc
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISI 35 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqqtisi 35 (532)
+.+++++|||+|.++...+..+...||.+++.+
T Consensus 105 ~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~l 137 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 (447)
T ss_dssp TCCEEEEEETTTCC------CCHHHHHTTSCEE
T ss_pred CCCcEEEEeChhhhCHHHHHHHHHHHhcCceEE
Confidence 568999999999999999999999999876653
No 97
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=48.82 E-value=10 Score=40.44 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=15.6
Q ss_pred ccccCCchHHHHHHHHH
Q psy14566 168 PSIHGNEQIKKAKLLVD 184 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~ 184 (532)
.+|+|.||++|+-+++.
T Consensus 67 vLL~GppGtGKTtLara 83 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARA 83 (499)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999999888
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.15 E-value=15 Score=47.65 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=31.2
Q ss_pred cceeeecccceeecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCc
Q psy14566 284 GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNE 338 (532)
Q Consensus 284 gi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~ 338 (532)
|-...|+..|.|+++.||-+. -.-.||+.|-+||=- +-...||.
T Consensus 699 G~~i~l~~~~~vfiTmNpgY~---------gr~eLP~nLk~lFr~--v~m~~Pd~ 742 (3245)
T 3vkg_A 699 GKNISLHQDMGIFVTMNPGYA---------GRSNLPDNLKKLFRS--MAMIKPDR 742 (3245)
T ss_dssp --CEECCTTCEEEECBCCCGG---------GCCCSCHHHHTTEEE--EECCSCCH
T ss_pred CCEEeecCCeEEEEEeCCCcc---------CcccChHHHHhhcEE--EEEeCCCH
Confidence 777889999999999999431 113789999999943 44556654
No 99
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=44.04 E-value=30 Score=39.07 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=17.4
Q ss_pred cccccCCchHHHHHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQ 188 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~ 188 (532)
.++|+|.||+||+.+++. +..
T Consensus 240 ~vLL~Gp~GtGKTtLara-la~ 260 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARA-VAN 260 (806)
T ss_dssp EEEECSCTTSSHHHHHHH-HHH
T ss_pred eEEEECcCCCCHHHHHHH-HHH
Confidence 469999999999998887 443
No 100
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=41.18 E-value=10 Score=37.54 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred cccccCCchHHHHHHHHHHHHHh------ccc-cCCCCCCCceeE-EEeeccccchhh--hccceeeecccccccCCChH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYTQL------RQR-DGNSSSKATWRI-TTRQLESLIRLS--EAMAKMECLDEYEFDKMDPH 236 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~~L------r~r-~g~~ss~~glt~-T~RqlESliRLs--EA~Akv~~~de~~vd~~d~~ 236 (532)
+.++.|.||++|..+...+.... .+. .--..++....+ .+|++-.-.... +++-|+..+|+ ++.|...
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIde--ad~lt~~ 97 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHD--CERMTQQ 97 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETT--GGGBCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEecc--HHHhCHH
Q ss_pred HHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccc
Q psy14566 237 DQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNV 316 (532)
Q Consensus 237 ~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni 316 (532)
.+.+|...||.-.-... -|+++.||.
T Consensus 98 a~naLLk~LEep~~~t~----------------------------------------fIl~t~~~~-------------- 123 (305)
T 2gno_A 98 AANAFLKALEEPPEYAV----------------------------------------IVLNTRRWH-------------- 123 (305)
T ss_dssp HHHHTHHHHHSCCTTEE----------------------------------------EEEEESCGG--------------
T ss_pred HHHHHHHHHhCCCCCeE----------------------------------------EEEEECChH--------------
Q ss_pred cCCCcccccccEEEEecccCCch
Q psy14566 317 SLSAPIMSRFDLFFVLIDECNEI 339 (532)
Q Consensus 317 ~l~~~LLSRFDLif~l~D~~d~~ 339 (532)
.|.+++.|| +|-+.--..++
T Consensus 124 kl~~tI~SR---~~~f~~l~~~~ 143 (305)
T 2gno_A 124 YLLPTIKSR---VFRVVVNVPKE 143 (305)
T ss_dssp GSCHHHHTT---SEEEECCCCHH
T ss_pred hChHHHHce---eEeCCCCCHHH
No 101
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=40.59 E-value=5.9 Score=38.85 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=38.0
Q ss_pred CCceeccccccccccccc-------------ccceee-----ecccceeecccCCCCCCCCCCCCccccccCCCcccc--
Q psy14566 265 NGVCCIDEFDNLSVTSSK-------------AGVRAT-----LNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS-- 324 (532)
Q Consensus 265 ~~~~~~~e~~~~~~~~~k-------------agi~~~-----l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS-- 324 (532)
.++.++||+|.+...... ..+... -+.++.||||+|... .|++++++
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~-------------~ld~al~r~g 175 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-------------IIDPAILRPG 175 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG-------------GSCGGGGSTT
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc-------------ccChHHhcCC
Confidence 468899999987533211 001111 134688999999752 36788998
Q ss_pred cccEEEEecccCCch
Q psy14566 325 RFDLFFVLIDECNEI 339 (532)
Q Consensus 325 RFDLif~l~D~~d~~ 339 (532)
|||.++-+ ..|+.+
T Consensus 176 Rf~~~i~i-~~p~~~ 189 (301)
T 3cf0_A 176 RLDQLIYI-PLPDEK 189 (301)
T ss_dssp SSCEEEEC-CCCCHH
T ss_pred ccceEEec-CCcCHH
Confidence 99976543 455543
No 102
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=38.08 E-value=36 Score=38.47 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=31.5
Q ss_pred Cceecccccccccccccc-----c----ceeee---------cccceeecccCCCCCCCCCCCCccccccCCCcccc--c
Q psy14566 266 GVCCIDEFDNLSVTSSKA-----G----VRATL---------NARASILAAANPIGGQYDRTKSLQHNVSLSAPIMS--R 325 (532)
Q Consensus 266 ~~~~~~e~~~~~~~~~ka-----g----i~~~l---------~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~LLS--R 325 (532)
.|.||||+|.+-..+... | ++.+| +.+.-||||+|-.. .|.++||- |
T Consensus 572 ~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~-------------~lD~AllRpgR 638 (806)
T 3cf2_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-------------IIDPAILRPGR 638 (806)
T ss_dssp EEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS-------------SSCHHHHSTTT
T ss_pred ceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch-------------hCCHhHcCCCc
Confidence 467888888875444211 1 11111 23567999999642 47788986 9
Q ss_pred ccEEEEecccCCchh
Q psy14566 326 FDLFFVLIDECNEIL 340 (532)
Q Consensus 326 FDLif~l~D~~d~~~ 340 (532)
||-++- .+-||.+.
T Consensus 639 fd~~i~-v~lPd~~~ 652 (806)
T 3cf2_A 639 LDQLIY-IPLPDEKS 652 (806)
T ss_dssp SCCEEE-C-----CH
T ss_pred ceEEEE-ECCcCHHH
Confidence 998765 35566543
No 103
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=36.26 E-value=11 Score=39.58 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=25.7
Q ss_pred CCceeeeecccCCCcc------------cchhHHHHHhhhhccc
Q psy14566 4 DNGVCCIDEFDKMDPH------------DQVAIHEAMEQQTISI 35 (532)
Q Consensus 4 d~GvccIDEfDkm~~~------------dr~~iheaMeqqtisi 35 (532)
.+|+++||||||+..+ -+.+|+++||-.+++.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~ 293 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST 293 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc
Confidence 5799999999999754 2348999999877765
No 104
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.73 E-value=13 Score=36.52 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCceeeeecccCCCcccchhHHHHHhhh
Q psy14566 4 DNGVCCIDEFDKMDPHDQVAIHEAMEQQ 31 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr~~iheaMeqq 31 (532)
+.++++|||+|.|.+..+.++.+.||..
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETY 160 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhc
Confidence 5579999999999999999999999864
No 105
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.69 E-value=16 Score=32.66 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhh
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQ 30 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeq 30 (532)
+.+++++|||+|.+.+.....+...|+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~ 128 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEM 128 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHh
Confidence 4578999999999998888888888876
No 106
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=34.57 E-value=15 Score=35.48 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCCceeeeecccCCCcccchhHHHHHhhh
Q psy14566 3 ADNGVCCIDEFDKMDPHDQVAIHEAMEQQ 31 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~dr~~iheaMeqq 31 (532)
+++++++|||+|.|++....++...||..
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~ 137 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMF 137 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhc
Confidence 46789999999999999899999999863
No 107
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=33.98 E-value=21 Score=38.28 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=20.9
Q ss_pred CCceeeeecccCCCcccc----hhHHHHHhhhhc
Q psy14566 4 DNGVCCIDEFDKMDPHDQ----VAIHEAMEQQTI 33 (532)
Q Consensus 4 d~GvccIDEfDkm~~~dr----~~iheaMeqqti 33 (532)
.+||.+|||+|+|.+..+ ..++++|+....
T Consensus 175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~ 208 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQN 208 (543)
T ss_dssp SSEEEEEEESSSCC---------CCGGGTCTTTT
T ss_pred cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhc
Confidence 678999999999998754 778888876443
No 108
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=32.99 E-value=14 Score=35.62 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=21.5
Q ss_pred CCCceeeeecccCC---------CcccchhHHHHHhhh
Q psy14566 3 ADNGVCCIDEFDKM---------DPHDQVAIHEAMEQQ 31 (532)
Q Consensus 3 ad~GvccIDEfDkm---------~~~dr~~iheaMeqq 31 (532)
+.+||++|||+|.+ .+.....|...|+..
T Consensus 129 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 129 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 46799999999988 444446677787753
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=32.65 E-value=64 Score=27.83 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=41.8
Q ss_pred ccccCCchHHHHHHHHHHHHHhccccCCCCCCCceeEEEeeccccchhhhccceeeecccccccCCChHHHHHHHHHHHh
Q psy14566 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQ 247 (532)
Q Consensus 168 pll~gdp~~~ksqlL~~~y~~Lr~r~g~~ss~~glt~T~RqlESliRLsEA~Akv~~~de~~vd~~d~~~~~~l~eaMeq 247 (532)
..++|.+|.||+-+++.....+.+ .|. ..+.+...++... .+. ..+.+.+.|| ++.++...+..+.+.++.
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~~~~~-~g~----~~~~~~~~~~~~~-~~~-~~~~lLilDE--~~~~~~~~~~~l~~li~~ 109 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQALE-AGK----NAAYIDAASMPLT-DAA-FEAEYLAVDQ--VEKLGNEEQALLFSIFNR 109 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHHHHT-TTC----CEEEEETTTSCCC-GGG-GGCSEEEEES--TTCCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCC----cEEEEcHHHhhHH-HHH-hCCCEEEEeC--ccccChHHHHHHHHHHHH
Confidence 578899999999999985554443 221 1112221211111 111 2356788899 788877666667666654
No 110
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=29.35 E-value=22 Score=34.77 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred CccccccCC-CcccccccEEEEecccC
Q psy14566 311 SLQHNVSLS-APIMSRFDLFFVLIDEC 336 (532)
Q Consensus 311 ~~~~ni~l~-~~LLSRFDLif~l~D~~ 336 (532)
+..-|+.|+ |+.++||||||+-.-.+
T Consensus 196 d~~~~L~lG~P~~~grYDlVfvNv~Tp 222 (324)
T 3trk_A 196 DYTYNLELGLPATLGRYDLVVINIHTP 222 (324)
T ss_dssp SEEECGGGCCCGGGCCEEEEEEECCCC
T ss_pred ceeeccccCCCCcCCceeEEEEecCCc
Confidence 445567777 78889999999866554
No 111
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=24.34 E-value=20 Score=37.32 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=24.0
Q ss_pred ceeeeecccCCCcccchhHHHHHhhh
Q psy14566 6 GVCCIDEFDKMDPHDQVAIHEAMEQQ 31 (532)
Q Consensus 6 GvccIDEfDkm~~~dr~~iheaMeqq 31 (532)
||++|||++.|++....+|+.+||..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~ 322 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS 322 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc
Confidence 79999999999999999999999854
No 112
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=21.26 E-value=31 Score=33.61 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCceeeeecccCCC-cccchhHHHHHhhh
Q psy14566 4 DNGVCCIDEFDKMD-PHDQVAIHEAMEQQ 31 (532)
Q Consensus 4 d~GvccIDEfDkm~-~~dr~~iheaMeqq 31 (532)
+.++++|||+|.|. +..+..++..||..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~ 133 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAY 133 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhC
Confidence 67899999999999 88888899998863
No 113
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=21.21 E-value=41 Score=30.47 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=21.9
Q ss_pred CCCceeeeecccCCCccc--chhHHHHHhh
Q psy14566 3 ADNGVCCIDEFDKMDPHD--QVAIHEAMEQ 30 (532)
Q Consensus 3 ad~GvccIDEfDkm~~~d--r~~iheaMeq 30 (532)
+..++.+|||+|.+.+.. +..+...++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNR 132 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 456899999999998766 6667777654
No 114
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=21.10 E-value=26 Score=34.73 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.1
Q ss_pred ceeeeecccCCCcccchhHHHHHhhhh
Q psy14566 6 GVCCIDEFDKMDPHDQVAIHEAMEQQT 32 (532)
Q Consensus 6 GvccIDEfDkm~~~dr~~iheaMeqqt 32 (532)
||.+|||+|.|++.....+...||...
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~ 217 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDM 217 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTT
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcC
Confidence 699999999999888888888886643
No 115
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=20.27 E-value=35 Score=31.64 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=17.8
Q ss_pred cccccCCchHHHHHHHHHHHH
Q psy14566 167 FPSIHGNEQIKKAKLLVDMYT 187 (532)
Q Consensus 167 ~pll~gdp~~~ksqlL~~~y~ 187 (532)
+++++||++.||+.|+.. |.
T Consensus 15 KivlvGd~~VGKTsLi~r-~~ 34 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITR-FM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHH-HH
T ss_pred EEEEECcCCcCHHHHHHH-HH
Confidence 489999999999999998 54
Done!