RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14566
(532 letters)
>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family.
Length = 327
Score = 155 bits (395), Expect = 4e-43
Identities = 59/119 (49%), Positives = 73/119 (61%), Gaps = 30/119 (25%)
Query: 224 CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKA 283
C+DE FDKM+ D+VAIHEAMEQQTISIAK A
Sbjct: 126 CIDE--FDKMNEEDRVAIHEAMEQQTISIAK----------------------------A 155
Query: 284 GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDY 342
G+ ATLNAR S+LAAANPI G+YD KS+ N++L P++SRFDL FVL+D+ +E D
Sbjct: 156 GIVATLNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDE 214
Score = 113 bits (284), Expect = 1e-27
Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 10/136 (7%)
Query: 383 YDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYL---EQIGDQIE 439
YD KS+ N++L P++SRFDL FVL+D+ +E D L K V E+I + E
Sbjct: 178 YDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDEELAKHIVDLHRASDEEEIETEDE 237
Query: 440 NEEELLERKTVV---EKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLES 496
+ ELL RK + E + +L A + LV+ Y +LR+ S + IT RQLES
Sbjct: 238 IDPELL-RKYIAYARENIKPKL-SDEAREKLVNWYVELRKESEGSRG--SIPITVRQLES 293
Query: 497 LIRLSEAMAKMECLDE 512
LIRLSEA A++ +E
Sbjct: 294 LIRLSEAHARLRLSEE 309
Score = 101 bits (254), Expect = 1e-23
Identities = 42/75 (56%), Positives = 48/75 (64%), Gaps = 16/75 (21%)
Query: 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRL 60
+LAD GVCCIDEFDKM+ D+VAIHEAMEQQTISIAK G+ V LN R
Sbjct: 118 VLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKA-----GI-------VATLNARC 165
Query: 61 AFLACSVAPTNPRFG 75
+ LA + NP FG
Sbjct: 166 SVLAAA----NPIFG 176
Score = 64.9 bits (159), Expect = 2e-11
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 179 AKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDE 227
+ LV+ Y +LR+ S + IT RQLESLIRLSEA A++ +E
Sbjct: 263 REKLVNWYVELRKESEGSRG--SIPITVRQLESLIRLSEAHARLRLSEE 309
Score = 49.1 bits (118), Expect = 3e-06
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 97 EWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKK 130
+ +I E+++D ++Y L S+ PSI+G+E +KK
Sbjct: 1 DEEEIRELAKDPDIYDKLARSIAPSIYGHEDVKK 34
Score = 45.2 bits (108), Expect = 5e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 151 QIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLL 182
++ KD ++Y L S+ PSI+G+E +KKA LL
Sbjct: 7 ELAKDPDIYDKLARSIAPSIYGHEDVKKAILL 38
Score = 41.4 bits (98), Expect = 9e-04
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 127 QIKKDRNLYQNLTSSLFPSIHGNEQIKK 154
++ KD ++Y L S+ PSI+G+E +KK
Sbjct: 7 ELAKDPDIYDKLARSIAPSIYGHEDVKK 34
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 153 bits (388), Expect = 1e-40
Identities = 59/119 (49%), Positives = 71/119 (59%), Gaps = 30/119 (25%)
Query: 224 CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKA 283
C+DE FDKMD D+ AIHEAMEQQTISIAK A
Sbjct: 305 CIDE--FDKMDDSDRTAIHEAMEQQTISIAK----------------------------A 334
Query: 284 GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDY 342
G+ TLNAR S+LAAANPIGG+YD + + N+ L API+SRFDL FV++DE +E D
Sbjct: 335 GITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDR 393
Score = 113 bits (285), Expect = 7e-27
Identities = 56/139 (40%), Positives = 75/139 (53%), Gaps = 9/139 (6%)
Query: 381 SEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIEN 440
YD + + N+ L API+SRFDL FV++DE +E D L K VV + ++ E
Sbjct: 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAK-HVVDLHRYSHPEEDEA 413
Query: 441 EEELLE----RKTVV---EKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQ 493
E L RK + EK+ +L AA LV Y LR+ D + S+++ IT RQ
Sbjct: 414 FEPPLSQEKLRKYIAYAREKIKPKL-SEEAADKLVKAYVDLRKEDSQTESRSSIPITVRQ 472
Query: 494 LESLIRLSEAMAKMECLDE 512
LES+IRLSEA AKM D
Sbjct: 473 LESIIRLSEAHAKMRLSDV 491
Score = 95.0 bits (237), Expect = 9e-21
Identities = 43/76 (56%), Positives = 46/76 (60%), Gaps = 18/76 (23%)
Query: 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRL 60
+LADNGVCCIDEFDKMD D+ AIHEAMEQQTISIAK G+ LN R
Sbjct: 297 VLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKA-----GI-------TTTLNAR- 343
Query: 61 AFLACSV-APTNPRFG 75
CSV A NP G
Sbjct: 344 ----CSVLAAANPIGG 355
Score = 65.0 bits (159), Expect = 4e-11
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 179 AKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYE 229
A LV Y LR+ D + S+++ IT RQLES+IRLSEA AKM D E
Sbjct: 443 ADKLVKAYVDLRKEDSQTESRSSIPITVRQLESIIRLSEAHAKMRLSDVVE 493
Score = 58.8 bits (143), Expect = 3e-09
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 43 EGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTESEWNKIY 102
+++ VR L+Y+ +F S + + +++ E +I
Sbjct: 147 VFATYIEANHVRKLDYKRSFEDSSFSVQS---------------------LSDEEEEEIR 185
Query: 103 EMSRDRNLYQNLTSSLFPSIHGNEQIKK 130
++S+D ++Y+ L SL PSI+G+E IKK
Sbjct: 186 KLSKDPDIYERLARSLAPSIYGHEDIKK 213
Score = 46.1 bits (110), Expect = 3e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 151 QIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLL 182
++ KD ++Y+ L SL PSI+G+E IKKA LL
Sbjct: 186 KLSKDPDIYERLARSLAPSIYGHEDIKKAILL 217
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 133 bits (336), Expect = 5e-33
Identities = 58/118 (49%), Positives = 72/118 (61%), Gaps = 30/118 (25%)
Query: 224 CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKA 283
C+DE FDKM+ D+VAIHEAMEQQTISIAK A
Sbjct: 388 CIDE--FDKMNEEDRVAIHEAMEQQTISIAK----------------------------A 417
Query: 284 GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILD 341
G+ ATLNAR S+LAAANP G+YD K++ N++L AP++SRFDL FVL D+ +E D
Sbjct: 418 GITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKD 475
Score = 121 bits (305), Expect = 4e-29
Identities = 76/237 (32%), Positives = 104/237 (43%), Gaps = 53/237 (22%)
Query: 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRD-LNYR 59
+LAD GVCCIDEFDKM+ D+VAIHEAMEQQTISIAK G+ LN R
Sbjct: 380 VLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKA-------------GITATLNAR 426
Query: 60 LAFLACSV-APTNPRFGG-----GELHTEEMSAELMKKH-----MTESEWNKIYEMSRDR 108
CSV A NP+FG + A L+ + + + + +D
Sbjct: 427 -----CSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDP-----DEEKDE 476
Query: 109 NLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLY-QNLTSSLF 167
+ + K R T SL E+ + Y ++
Sbjct: 477 EI-------------AEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVT 523
Query: 168 PSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMEC 224
P + E+ + + L D Y ++R++ K T IT RQLES+IRL+EA AKM
Sbjct: 524 PVL--TEEAR--EELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRL 576
Score = 115 bits (289), Expect = 5e-27
Identities = 77/267 (28%), Positives = 107/267 (40%), Gaps = 84/267 (31%)
Query: 259 ALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSL 318
AL+LAD GVCCIDEFD ++ R +I A Q +S+
Sbjct: 378 ALVLADGGVCCIDEFDKMNE-----------EDRVAIHEAM------------EQQTISI 414
Query: 319 S-APIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELA 377
+ A I + L C +L NP
Sbjct: 415 AKAGITA------TLNARC-SVL--AAANPKFGR-------------------------- 439
Query: 378 LNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNE---------ILDYGLHKSEVVA 428
YD K++ N++L AP++SRFDL FVL D+ +E ILD +
Sbjct: 440 -----YDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET 494
Query: 429 WYLEQIGDQIENEEELLE------RKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSS 482
L+ + + E + ELL RK V + E A + L D Y ++R++
Sbjct: 495 ISLDGVDEVEERDFELLRKYISYARKNVTPVLTEE-----AREELEDYYVEMRKKSALVE 549
Query: 483 SKATWRITTRQLESLIRLSEAMAKMEC 509
K T IT RQLES+IRL+EA AKM
Sbjct: 550 EKRTIPITARQLESIIRLAEAHAKMRL 576
Score = 48.1 bits (115), Expect = 8e-06
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 91 KHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKK 130
+TE + +I E+++ ++Y L S+ PSI+G+E +KK
Sbjct: 257 VEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKK 296
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 122 IHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKL 181
+ N K D+ +T I +++ K ++Y L S+ PSI+G+E +KKA L
Sbjct: 243 LEANSVEKLDKREEVEITEEDEEEI---KELAKRPDIYDILIKSIAPSIYGHEDVKKAIL 299
Query: 182 L 182
L
Sbjct: 300 L 300
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
Provisional.
Length = 915
Score = 98.5 bits (245), Expect = 1e-21
Identities = 91/429 (21%), Positives = 167/429 (38%), Gaps = 93/429 (21%)
Query: 100 KIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNL- 158
KI E+SR+ +Y+ L S PSI +K L LF + K +
Sbjct: 430 KILELSRNPMIYRILLDSFAPSIKARNNVKI------GLLCQLFSGNKNSSDFNKSPDAC 483
Query: 159 --YQNLTSSLFPSIHGNEQIKKAKLLVDMYTQL-------RQRDGNSSSKATWRITTRQL 209
N + + G+ K++LL YT L +SS T I +
Sbjct: 484 YKVDNFRGIINVLLCGDPGTAKSQLL--HYTHLLSPRSIYTSGKSSSSVGLTASIKFNES 541
Query: 210 ESLIRLSEAMA------KMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLA 263
++ + + A + C+DE DK +++++E MEQQT++IAK
Sbjct: 542 DNGRAMIQPGAVVLANGGVCCIDE--LDKCHNESRLSLYEVMEQQTVTIAK--------- 590
Query: 264 DNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIM 323
AG+ ATL A +ILA+ NPI +Y++ K++ N+++S +
Sbjct: 591 -------------------AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631
Query: 324 SRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSE- 382
+RFDL ++++D ++ D Q S + D M + N +
Sbjct: 632 TRFDLIYLVLDHIDQDTD-----------------QLISLSIAKDFLLPHMTGSGNDEDT 674
Query: 383 YDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEE 442
YDR+ + M D + DY + +++ Y++ +
Sbjct: 675 YDRSNT-----------MHVED------ESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKL 717
Query: 443 ELLERKTVVEKVIE-RLIYHGAAKLLVDMYTQLRQRDGNSSSKATWR---ITTRQLESLI 498
+K + + ++ R + L + Q D + R +++R + S+I
Sbjct: 718 SDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSII 777
Query: 499 RLSEAMAKM 507
R+S ++A+M
Sbjct: 778 RISVSLARM 786
Score = 65.0 bits (158), Expect = 6e-11
Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 67/261 (25%)
Query: 1 MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRL 60
+LA+ GVCCIDE DK +++++E MEQQT++IAK + V L
Sbjct: 554 VLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI------------VATLKAET 601
Query: 61 AFLACSVAPTNPRFGGGELHTEEMSAE-----------LMKKHMTESEWNKIYEMSRDRN 109
A LA S P N R+ + E ++ L+ H+ + +++ +S ++
Sbjct: 602 AILA-SCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDT-DQLISLSIAKD 659
Query: 110 LYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSL--- 166
L P + G D + Y + +E ++ +++ +N L
Sbjct: 660 F-------LLPHMTG---SGNDEDTYDRSNT----MHVEDESLRSEKDYNKNDLDMLRMY 705
Query: 167 --FPSIHGNEQI--KKAKLLVDMYTQLRQRDGNSS-------------------SKATWR 203
F +H ++ + K++ Y ++RQ + +S S T
Sbjct: 706 IKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRM 765
Query: 204 IT--TRQLESLIRLSEAMAKM 222
I +R + S+IR+S ++A+M
Sbjct: 766 IYVSSRMISSIIRISVSLARM 786
>gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 32.2 bits (74), Expect = 0.79
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 37/109 (33%)
Query: 251 SIAKRPELALMLADNGVCCIDEF---------------DNLSVTSSKAGVRATLNARASI 295
+ + E++L A NGV +DE +N + S+AG + T AR +
Sbjct: 272 GVPRPGEISL--AHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQL 329
Query: 296 LAAANPIGGQYDRTKSLQHNVS---------------LSAPIMSRFDLF 329
+AA NP +L + LS P + R DL
Sbjct: 330 VAAMNP-----CPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLM 373
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 31.3 bits (71), Expect = 1.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 3 ADNGVCCIDEFDKMDPHDQVAIHEAME 29
A + +DE ++ P Q A+ EA+E
Sbjct: 111 AVRVILLLDEINRAPPEVQNALLEALE 137
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 30.6 bits (69), Expect = 2.6
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 29/94 (30%)
Query: 262 LADNGVCCIDE--------FDNL-------SVTSSKAGVRATLNARASILAAANPI-GGQ 305
LA NGV +DE D L S++ S+A + AR ++AA NP G
Sbjct: 293 LAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGH 352
Query: 306 YDRTKSLQHNVS-----------LSAPIMSRFDL 328
Y H LS P + R DL
Sbjct: 353 Y--GGKNTHCRCSPQQISRYWNKLSGPFLDRIDL 384
>gnl|CDD|213362 cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily.
This subfamily belongs to the Thermotoga maritima CorA
(TmCorA)-family of the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
this subfamily are found in all three kingdoms of life.
It is functionally diverse subfamily, in addition to the
CorA Co2+ transporter from the hyperthermophilic
Thermotoga maritima, it includes Methanosarcina mazei
CorA which may be involved in transport of copper and/or
other divalent metal ions. Thermotoga maritima CorA
forms funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport by a related protein, Saccharomyces cerevisiae
Alr1p. Natural variants in this signature sequence may
be associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 294
Score = 29.7 bits (68), Expect = 3.7
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 20/61 (32%)
Query: 405 LFFVLIDECNEILDYGLHKSEVVAWY---LEQIGDQIEN-EEELLERKTVVEKVIERLIY 460
L + L+D +V Y LE++GD+IE+ EEELLE T + +ER I+
Sbjct: 112 LAYALLDA-------------IVDNYFPVLEKLGDRIEDLEEELLENPT--PETLER-IH 155
Query: 461 H 461
Sbjct: 156 K 156
>gnl|CDD|238483 cd00983, recA, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange.
Length = 325
Score = 29.5 bits (67), Expect = 4.6
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 403 FDLFFVL-IDECNEILDYGLHKSEVV----AWYL---EQIGDQIENEEELLERKTVVEKV 454
FD+ F I EI+D + + ++ +WY E++G EN +E L+ +
Sbjct: 256 FDILFGEGISREGEIIDLAV-ELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADE 314
Query: 455 IERLIY 460
IE+ +
Sbjct: 315 IEKKVR 320
>gnl|CDD|191625 pfam06869, DUF1258, Protein of unknown function (DUF1258). This
family represents a conserved region approximately 260
residues long within a number of hypothetical proteins
of unknown function that seem to be specific to C.
elegans. Note that this family contains a number of
conserved cysteine and histidine residues.
Length = 258
Score = 28.7 bits (64), Expect = 6.2
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 126 EQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAK----- 180
EQ+K RNL NL S F S E +L S SI G +I K
Sbjct: 70 EQLKNGRNLEHNLASPFFSSFWETE-------SPNHLRLSTVVSIDG-VRISGNKKKLWP 121
Query: 181 ---LLVDMYTQLRQRDGN 195
+LVD+ T L Q+ N
Sbjct: 122 VSLILVDLPTGLMQKSTN 139
>gnl|CDD|176717 cd00045, DED, The Death Effector Domain: a protein-protein
interaction domain. Death Effector Domains comprise a
subfamily of the Death Domain (DD) superfamily.
DED-containing proteins include Fas-Associated via Death
Domain (FADD), Astrocyte phosphoprotein PEA-15, the
initiator caspases (caspase-8 and -10), and
FLICE-inhibitory protein (FLIP), among others. These
proteins are prominent components of the programmed cell
death (apoptosis) pathway. Some members also have
non-apoptotic functions such as regulation of insulin
signaling (DEDD and PEA15) and cell cycle progression
(DEDD). DDs are protein-protein interaction domains
found in a variety of domain architectures. Their common
feature is that they form homodimers by self-association
or heterodimers by associating with other members of the
DD superfamily including PYRIN and CARD (Caspase
activation and recruitment domain). They serve as
adaptors in signaling pathways and they can recruit
other proteins into signaling complexes.
Length = 77
Score = 26.8 bits (60), Expect = 7.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 499 RLSEAMAKMECLDELGKCCETNTSNVEQLLRK 530
++ L+ GK E N S +E+LLR
Sbjct: 35 KIKTPFDLFLVLERQGKLGEDNLSYLEELLRS 66
>gnl|CDD|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport
and metabolism].
Length = 322
Score = 28.4 bits (64), Expect = 8.7
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 430 YLEQIGDQIENEEELLERKTVVEKVIE------RLIY-HGAAKLLVDMYTQLRQRDGNSS 482
LEQI D++E E+ L T E++ L+Y A L D+ +L +R +
Sbjct: 155 VLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL 214
Query: 483 SKAT---WRITTRQLESLIRLSEAMAKM 507
S+ R L LI + EA+ +
Sbjct: 215 SEEDREYLRDVLDHLTQLIEMLEALRER 242
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed.
Length = 586
Score = 28.6 bits (65), Expect = 9.3
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 39/100 (39%)
Query: 17 DPHDQVAIHEAMEQ------------QTISIAKGDMNVEGVRG--------------LKS 50
D HD AI A+E+ +TI I KG N EG K
Sbjct: 220 DGHDVEAIDAAIEEAKASTKPTLIIAKTI-IGKGAPNKEGTHKVHGAPLGAEEIAAAKKE 278
Query: 51 LGVRDLNYRLAFLAC--SVAPTNPRFGGGELHTEEMSAEL 88
LG +YR A ++A P GG SA+L
Sbjct: 279 LG---WDYRKASGKALNALAKALPELVGG-------SADL 308
>gnl|CDD|197326 cd09092, INPP5A, Type I inositol polyphosphate 5-phosphatase I.
Type I inositol polyphosphate 5-phosphatase I (INPP5A)
hydrolyzes the 5-phosphate from inositol
1,3,4,5-tetrakisphosphate [I(1,3,4,5)P4] and inositol
1,4,5-trisphosphate [I(1,4,5)P3]. It belongs to a family
of Mg2+-dependent inositol polyphosphate 5-phosphatases,
which hydrolyze the 5-phosphate from the inositol ring
of various 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), and to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. As the substrates of INPP5A mobilize
intracellular calcium ions, INPP5A is a calcium
signal-terminating enzyme. In platelets, phosphorylated
pleckstrin binds and activates INPP5A in a 1:1 complex,
and accelerates the degradation of the calcium
ion-mobilizing I(1,4,5)P3.
Length = 383
Score = 28.6 bits (64), Expect = 9.5
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 360 WKSRILNLDESHRSMELALNVSEY---DRTKSLQH-----NVSLSAPIMSRFDLFFVLID 411
W L +H+ +AL++ E + S++H LS+ M FD V +D
Sbjct: 24 WLREFLQTVHAHKPSFVALHLQEVGGKNYEASMEHVEKFIRELLSSDAMKDFDRVRVYVD 83
Query: 412 E 412
E
Sbjct: 84 E 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,287,822
Number of extensions: 2528705
Number of successful extensions: 2200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2185
Number of HSP's successfully gapped: 55
Length of query: 532
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 431
Effective length of database: 6,457,848
Effective search space: 2783332488
Effective search space used: 2783332488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)