RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14566
         (532 letters)



>d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
           echovirus 1 [TaxId: 46633]}
          Length = 281

 Score = 28.6 bits (64), Expect = 1.9
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 182 LVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQ-VA 240
            V           +S+S   W ITTR++  L R  E    +    E         DQ  +
Sbjct: 73  CVFYLEYKTGTKEDSNSFNNWVITTRRVAQLRRKLEMFTYLRFDMEITVVITSSQDQSTS 132

Query: 241 IHEAMEQQTISI 252
            ++     T  I
Sbjct: 133 QNQNAPVLTHQI 144



 Score = 26.3 bits (58), Expect = 8.2
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 467 LVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMEC 509
            V           +S+S   W ITTR++  L R  E    +  
Sbjct: 73  CVFYLEYKTGTKEDSNSFNNWVITTRRVAQLRRKLEMFTYLRF 115


>d2c1ia2 d.341.1.1 (A:46-267) Peptidoglycan GlcNAc deacetylase
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 222

 Score = 27.6 bits (61), Expect = 2.9
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 82  EEMSAELMKKHMTESEWNKIYEMSRDRNL--------YQNLTSSLFPSIHGNEQIKKDRN 133
           +E+++ +  K + + +  +I +   D++L           +     P +   E+I     
Sbjct: 135 KELTSFIEDKKIEQDQSEQIVKNFSDQDLSAWNFDYKDSQIILYPSPVVENLEEIALP-- 192

Query: 134 LYQNLTSSLFPSIHGNEQIKKDRNLYQNL 162
                 S+ F  I  +  ++KD  LYQ+ 
Sbjct: 193 -----VSAFFDVIQSSYLLEKDAALYQSY 216


>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
           (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
           63363]}
          Length = 247

 Score = 27.6 bits (61), Expect = 3.8
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 2   LADNGVCCIDEFDKMDPHDQVAIHEAMEQQTI 33
           LAD G   +DE  ++    Q  +   +E    
Sbjct: 92  LADGGTLFLDEIGELSLEAQAKLLRVIESGKF 123


>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator
           (NarL) {Escherichia coli [TaxId: 562]}
          Length = 67

 Score = 25.1 bits (55), Expect = 5.0
 Identities = 8/43 (18%), Positives = 20/43 (46%)

Query: 488 RITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRK 530
           ++T R+ + L  +++ +        L     T   +V+ +L+K
Sbjct: 6   QLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKK 48


>d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus
           16, (HRV-16) [TaxId: 31708]}
          Length = 285

 Score = 26.7 bits (59), Expect = 6.3
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 193 DGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEF 230
           + N  S   W I  +++  + R  E         E   
Sbjct: 87  NYNDQSFTKWNINLQEMAQIRRKFEMFTYARFDSEITM 124


>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor
           TraR, C-terminal domain {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 65

 Score = 24.8 bits (54), Expect = 7.1
 Identities = 4/43 (9%), Positives = 15/43 (34%)

Query: 488 RITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRK 530
            +  ++   L  ++      E  D  G    +    + + +++
Sbjct: 4   WLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKR 46


>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated
           protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 124

 Score = 25.8 bits (56), Expect = 7.5
 Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 8/79 (10%)

Query: 358 SQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFF-------VLI 410
           S W   I    ++ +   ++++ +  +  +    +           +LF        V  
Sbjct: 27  STWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQ 86

Query: 411 DECNEILDYGLHKSEVVAW 429
              +EI    + K      
Sbjct: 87  VFIDEIWSQ-MTKEGKCLP 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,895,199
Number of extensions: 85547
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 13
Length of query: 532
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 442
Effective length of database: 1,171,896
Effective search space: 517978032
Effective search space used: 517978032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)