RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14567
(238 letters)
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 220 bits (562), Expect = 2e-72
Identities = 99/194 (51%), Positives = 137/194 (70%), Gaps = 1/194 (0%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
GIGR V+ L A ++A+S+TQA+LDSL + P ++ V VDL DW T A+ VGPV
Sbjct: 18 GIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPV 77
Query: 83 DVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSS 142
D+L+NNAAVA FL++ +E D F+VN++AVI +SQ+V++ +I + G+IVNVSS
Sbjct: 78 DLLVNNAAVALLQPFLEVTKEAF-DRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS 136
Query: 143 IAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSDPAK 202
+ A+ H++Y ++K ALD +T+ MALELGP+ IRVN+V PTVVMT MG+ WSDP K
Sbjct: 137 QCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHK 196
Query: 203 AGPMLAKTPLGRFA 216
A ML + PLG+FA
Sbjct: 197 AKTMLNRIPLGKFA 210
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 215 bits (551), Expect = 7e-71
Identities = 82/194 (42%), Positives = 124/194 (63%), Gaps = 1/194 (0%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
GIGR V+ L A ++A+++T ++L SL + P ++ V VDL DW T A+ +GPV
Sbjct: 18 GIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPV 77
Query: 83 DVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSS 142
D+L+NNAA+ FL++ +E D F VN+++V +SQ+V++ MI+ + GSIVNVSS
Sbjct: 78 DLLVNNAALVIMQPFLEVTKEAF-DRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 136
Query: 143 IAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSDPAK 202
+ YS++K A+ +T+ MA+ELGP+ IRVNSV PTVV+T MG+ +DP
Sbjct: 137 MVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEF 196
Query: 203 AGPMLAKTPLGRFA 216
A + + PL +FA
Sbjct: 197 ARKLKERHPLRKFA 210
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 181 bits (462), Expect = 5e-57
Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 10/203 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-----PNVQTVQVDLQDWARTRAAVS 77
GIG I + A ++ + + LD+ ++A +V TV +DL +
Sbjct: 31 GIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELAR 90
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +DVL+NNA ++ +D D + D+ VN++A ++ V K M+
Sbjct: 91 RAAEAFGGLDVLVNNAGISHPQPVVDTDPQLF-DATIAVNLRAPALLASAVGKAMVAAGE 149
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G+I+ V+S A L H Y SKA L T+ +A ELGP+ IR NSV PTVV+T+MG
Sbjct: 150 GGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMG 209
Query: 194 RTGWSDPAKAGPMLAKTPLGRFA 216
+ W D AK+ PM+A+ PLGRFA
Sbjct: 210 QRVWGDEAKSAPMIARIPLGRFA 232
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 173 bits (441), Expect = 6e-54
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 11/203 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLD----SLKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIG I +L+Q A ++ S+ Q N+D +L+ +V + V+
Sbjct: 25 GIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAM 84
Query: 79 V----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G VD+L++NAAV F +D EE D I VN+KA + +++ V M
Sbjct: 85 AVNLHGGVDILVSNAAVNPFFGNIIDATEEVW-DKILHVNVKATVLMTKAVVPEMEKRG- 142
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
GS++ VSS+ Y+ SK AL +T+ +A+EL P NIRVN + P ++ T
Sbjct: 143 GGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFS 202
Query: 194 RTGWSDPAKAGPMLAKTPLGRFA 216
+ W D A+ M + R
Sbjct: 203 QVLWMDKARKEYMKESLRIRRLG 225
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 166 bits (422), Expect = 4e-51
Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 11/202 (5%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
G+G+ +L+++ I+ A SK A + +++ V V+ ++ A+ +
Sbjct: 15 GVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
++ G +DV +NNAA ++++E + D ++N KA++ +Q +K M +
Sbjct: 75 QIDETFGRLDVFVNNAASGVLRPVMELEETH-WDWTMNINAKALLFCAQEAAKLMEKNG- 132
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G IV++SS+ LE +T SKAAL+++TR +A+EL P I VN+V + T
Sbjct: 133 GGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDAL 192
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
+ + TP GR
Sbjct: 193 KHFPNREDLLEDARQNTPAGRM 214
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 164 bits (418), Expect = 1e-50
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 15/208 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
GIGR E + A + P VQ+D+ AA++
Sbjct: 19 GIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVE 78
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G +D+L+NNAA+ ++I E+ + +F +N+ + Q ++ MI G I
Sbjct: 79 HAGGLDILVNNAALFDLAPIVEITRESY-EKLFAINVAGTLFTLQAAARQMIAQGRGGKI 137
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM----- 192
+N++S AG+ IY A+KAA+ S+T++ L+L + I VN++ P VV +
Sbjct: 138 INMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVD 197
Query: 193 ----GRTGWSDPAKAGPMLAKTPLGRFA 216
K + P GR
Sbjct: 198 ALFARYENRPRGEKKRLVGEAVPFGRMG 225
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 163 bits (416), Expect = 3e-50
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
G+G+ + + + +A ++ + +AN L+ +K+ V+ D+ + V
Sbjct: 18 GLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ 77
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G +DV+INNA + ++ + + + D N+ S+ K +++ I
Sbjct: 78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSD-WNKVIDTNLTGAFLGSREAIKYFVENDI 136
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
+G+++N+SS+ K Y+ASK + +T T+ALE P IRVN++ P + T +
Sbjct: 137 KGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPIN 196
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
++DP + + + P+G
Sbjct: 197 AEKFADPEQRADVESMIPMGYI 218
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 164 bits (417), Expect = 3e-50
Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 15/207 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWARTRAAVSK 78
GIG IVE+L+ A + S+ + LD + + V+ DL +
Sbjct: 32 GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQT 91
Query: 79 V-----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G +++L+NNA V D E++ + I N +A ++SQ+ + +
Sbjct: 92 VAHVFDGKLNILVNNAGVVIHKEAKDFTEKDY-NIIMGTNFEAAYHLSQIAYPLLKASQ- 149
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G+++ +SSIAG +AL ++YSASK A++ +T+++A E NIRVNSV P V++T +
Sbjct: 150 NGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLV 209
Query: 194 RTGWSD----PAKAGPMLAKTPLGRFA 216
T + + KTP+GR
Sbjct: 210 ETAIKKNPHQKEEIDNFIVKTPMGRAG 236
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 163 bits (415), Expect = 4e-50
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 14/206 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVSK 78
GIG IVE+L+ A + S+ Q L+ + V+ DL + + ++
Sbjct: 20 GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNT 79
Query: 79 V-----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G +++L+NNA + + D E+ I +N +A ++S + + +
Sbjct: 80 VANHFHGKLNILVNNAGIVIYKEAKDYTVEDY-SLIMSINFEAAYHLSVLAHPFLKASE- 137
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
+G++V +SS++G A+ +Y A+K A+D +TR +A E NIRVN V P V+ T +
Sbjct: 138 RGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLV 197
Query: 194 RTGWSDPAKA---GPMLAKTPLGRFA 216
DP + ++ + L R
Sbjct: 198 EMTIQDPEQKENLNKLIDRCALRRMG 223
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 162 bits (412), Expect = 1e-49
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 12/202 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDS----LKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIG IVE+ + A+I ++ + L+ ++ V D +
Sbjct: 25 GIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQT 84
Query: 79 V-----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G +D+LINN R LD E+ N+++ ++SQ+ +
Sbjct: 85 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDF-SFHISTNLESAYHLSQLAHPLLKASG- 142
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G+I+ +SSIAG + +IYSA+K AL+ + R +A E IR N+V P V+ T +
Sbjct: 143 CGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLA 202
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
+ D K ++++ PLGRF
Sbjct: 203 EAVYDDEFKKV-VISRKPLGRF 223
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 161 bits (410), Expect = 2e-49
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 23 GIGRCIVEKLSQHEAII----IALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAV 76
GIGR I EKL+ I + + QA + ++ A V +D+ D A +A+
Sbjct: 13 GIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAI 72
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
+ G DVL+NNA +A+ L++ EE+L I+ VN+ +V Q S+ +
Sbjct: 73 DEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDL-KQIYSVNVFSVFFGIQAASRKFDELG 131
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
++G I+N +SIA + YS +K A+ +T+ A EL P VN+ P +V T M
Sbjct: 132 VKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGM 191
Query: 193 ---------GRTGWSDPAKAGPMLAKTPLGRFA 216
G + LGR +
Sbjct: 192 WEQIDAELSKINGKPIGENFKEYSSSIALGRPS 224
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 161 bits (410), Expect = 2e-49
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 13/203 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
G+G V +L + A ++ + ++N+ +++ F P V ++ D+ D +
Sbjct: 19 GMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQ 78
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G +D+L NA V+ + F + E + D F VN K Q ++ + + GSI
Sbjct: 79 TLGAIDLLHINAGVSELEPFDQVSEAS-YDRQFAVNTKGAFFTVQRLTPLIRE---GGSI 134
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM----G 193
V SS+A + G ++YSASKAAL S +A EL P IRVNSV P + T G
Sbjct: 135 VFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAG 194
Query: 194 RTGWSDPAKAGPMLAKTPLGRFA 216
T TP+ R
Sbjct: 195 ITEAERAEFKTLGDNITPMKRNG 217
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 160 bits (406), Expect = 8e-49
Identities = 59/211 (27%), Positives = 88/211 (41%), Gaps = 18/211 (8%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIG+ I +L + I + A + QA + V+VD+ D + AAV +
Sbjct: 13 GIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 72
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G DV++NNA VA I E + D ++++N+K VI Q +
Sbjct: 73 ARKTLGGFDVIVNNAGVAPSTPIESITPEIV-DKVYNINVKGVIWGIQAAVEAFKKEGHG 131
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM-- 192
G I+N S AG +YS+SK A+ +T+T A +L P I VN P +V T M
Sbjct: 132 GKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA 191
Query: 193 -------GRTGWSDPAKAGPMLAKTPLGRFA 216
G + LGR +
Sbjct: 192 EIDRQVSEAAGKPLGYGTAEFAKRITLGRLS 222
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 160 bits (408), Expect = 9e-49
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 14/206 (6%)
Query: 23 GIGRCIVEKLSQHEAIII-------ALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAA 75
GIG+ + L A ++ L+ L++L ++ D+ + T A
Sbjct: 22 GIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARA 81
Query: 76 VSKV----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMID 130
V V G + +++ A + +D E D+N+ + + + ++ M+
Sbjct: 82 VDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAW-RRTVDLNVNGTMYVLKHAAREMVR 140
Query: 131 HKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
GS V +SSIA Y +K+A+D + + A ELG +RVNS++P ++ T
Sbjct: 141 GG-GGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRT 199
Query: 191 QMGRTGWSDPAKAGPMLAKTPLGRFA 216
+ + TPL R
Sbjct: 200 DLVAAITESAELSSDYAMCTPLPRQG 225
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 158 bits (402), Expect = 2e-48
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 22/206 (10%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV-- 79
GIG+ +VE L Q++ +I + Q+ N++ ++ DL + +
Sbjct: 15 GIGKAVVELLLQNKNHTVINIDIQQSFSAE------NLKFIKADLTKQQDITNVLDIIKN 68
Query: 80 GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVN 139
D + NA + DID E+ I + D+N+ + I + + + K+ SIV
Sbjct: 69 VSFDGIFLNAGILIKGSIFDIDIES-IKKVLDLNVWSSIYFIKGLENNL---KVGASIVF 124
Query: 140 VSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSD 199
S A Y+ SK A+ +T+++AL+L Y IRVN+V P V T + R
Sbjct: 125 NGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQK 184
Query: 200 PAKAGP---------MLAKTPLGRFA 216
A + PL R A
Sbjct: 185 YANNVGISFDEAQKQEEKEFPLNRIA 210
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 159 bits (404), Expect = 2e-48
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 15/208 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN-VQTVQVDLQDWARTRAAVSKV-- 79
GIG I L + A + ++ N V+VD+ A AA+ K
Sbjct: 23 GIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAID 82
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G D+L NA V+ +DI +E D FDVN + V +Q+ + + +G I
Sbjct: 83 ALGGFDLLCANAGVSTMRPAVDITDEEW-DFNFDVNARGVFLANQIACRHFLASNTKGVI 141
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM----- 192
VN +S+A K YSASK A+ T+ +A E+ P NIRVN V P V T M
Sbjct: 142 VNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREI 201
Query: 193 ----GRTGWSDPAKAGPMLAKTPLGRFA 216
G + A ++ TPLGR
Sbjct: 202 IWEAELRGMTPEAVRAEYVSLTPLGRIE 229
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 159 bits (404), Expect = 2e-48
Identities = 53/204 (25%), Positives = 79/204 (38%), Gaps = 14/204 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
GIG ++ A + + + LD+ +Q D + A KV
Sbjct: 40 GIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKA 99
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G +DVL NA ++ EE D FD N+K V+ Q + S+
Sbjct: 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQ-YDDTFDRNVKGVLFTVQKALPLLAR---GSSV 155
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM----- 192
V S AG T ++Y+ASKAAL S R L+L IR+N++ P T
Sbjct: 156 VLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELA 215
Query: 193 GRTGWSDPAKAGPMLAKTPLGRFA 216
G+ + A+ P+GR
Sbjct: 216 GKDPVQQQGLLNALAAQVPMGRVG 239
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 158 bits (402), Expect = 3e-48
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 12/202 (5%)
Query: 23 GIGRCIVEKLSQHEA-IIIA---LSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIG+ I + A ++++ +D ++Q + D+ A
Sbjct: 22 GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G VD+L+NNA + D+ + +++N+ + ++SQ+V+ M +
Sbjct: 82 AISKLGKVDILVNNAGGGG-PKPFDMPMADF-RRAYELNVFSFFHLSQLVAPEMEKNG-G 138
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G I+ ++S+A + T Y++SKAA + R MA +LG NIRVN + P ++T +
Sbjct: 139 GVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK 198
Query: 195 TGWSDPAKAGPMLAKTPLGRFA 216
+ + + ML TP+ R
Sbjct: 199 SVITPEIEQK-MLQHTPIRRLG 219
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 157 bits (399), Expect = 1e-47
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 18/203 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG +V L A + + + + DL++ A V
Sbjct: 39 GIGGAVVTALRAAGARVAV---ADRAVAGIAADL----HLPGDLREAAYADGLPGAVAAG 91
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
G +D+++NNA V R + + + VN++A I + M G+IV
Sbjct: 92 LGRLDIVVNNAGVISRGRITETTDAD-WSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIV 149
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
NV+S G GH +Y +KAAL S+T+ M ++ P IR+N+V P V T M RTG++
Sbjct: 150 NVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFA 209
Query: 199 DPAKAGP-----MLAKTPLGRFA 216
+ PLGR A
Sbjct: 210 KRGFDPDRAVAELGRTVPLGRIA 232
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 156 bits (397), Expect = 3e-47
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 14/203 (6%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIG I +L+ ++ A A ++ A T Q D+ D A R +
Sbjct: 38 GIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFA 97
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G VDVL+NNA + + + D + VN+K N + ++ +
Sbjct: 98 TAEEAFGGVDVLVNNAGIMPLTTIAETGDAVF-DRVIAVNLKGTFNTLREAAQRLRVG-- 154
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G I+N+S+ + IY+A+KA ++++T ++ EL +I VN+V P T +
Sbjct: 155 -GRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLF 213
Query: 194 RTGWSDPAKAGPMLAKTPLGRFA 216
G SD + PL R
Sbjct: 214 LEGKSDEVRDR-FAKLAPLERLG 235
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 155 bits (394), Expect = 4e-47
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 8/199 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
GIG+ ++ A +IA ++ L L++ P +QT +D+ + ++V +
Sbjct: 17 GIGQAAALAFAREGAKVIATDINESKLQELEKY-PGIQTRVLDVTKKKQIDQFANEVERL 75
Query: 83 DVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSS 142
DVL N A LD +E++ D ++N++++ + + M+ K G+I+N+SS
Sbjct: 76 DVLFNVAGFVHHGTVLDCEEKDW-DFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSS 133
Query: 143 IAGK-TALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR---TGWS 198
+A + +YS +KAA+ +T+++A + IR N V P V T +
Sbjct: 134 VASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARG 193
Query: 199 DPAKA-GPMLAKTPLGRFA 216
+P +A L + GRFA
Sbjct: 194 NPEEARNDFLKRQKTGRFA 212
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 155 bits (395), Expect = 6e-47
Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 23 GIGRCIVEKLSQHEAIII-------ALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAA 75
GIGR +Q A + L +T+ + + V +V D+
Sbjct: 17 GIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQI 76
Query: 76 VSKV----GPVDVLINNAAVARFDRFLDIDEENLI---DSIFDVNIKAVINISQVVSKTM 128
++ G +DVL+NNA A D F + I +N++AVI +++ V +
Sbjct: 77 INSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHL 136
Query: 129 IDHKIQGSIVNVSSI-AGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTV 187
+ K G IVNVSSI AG A Y+ +KAALD TR+ A++L + IRVNSV P +
Sbjct: 137 VASK--GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGM 194
Query: 188 VMTQM-GRTGWSDPAKAGP------MLAKTPLGRFA 216
V T G D A P+G
Sbjct: 195 VETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAG 230
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 155 bits (393), Expect = 9e-47
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 21/212 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDS----LKQAFPNVQTVQVDLQDWARTRAAVSK 78
+G + + ++ A ++ ++T L+ + +V D+ D A+ V +
Sbjct: 22 ALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDE 81
Query: 79 V----GPVDVLINNAA-VARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G VDV+INNA V F + E+ + ++ + + + Q + + + K
Sbjct: 82 TMKAYGRVDVVINNAFRVPSMKPFANTTFEH-MRDAIELTVFGALRLIQGFTPALEESK- 139
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G++VNV+S+ + + + Y +K+AL ++++T+A ELG IRVNSV P +
Sbjct: 140 -GAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTL 198
Query: 194 RTGWSDPAKAGP---------MLAKTPLGRFA 216
++ + A A + L R
Sbjct: 199 KSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLP 230
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 155 bits (393), Expect = 1e-46
Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 22/214 (10%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN------VQTVQVDLQDWARTRAAV 76
GIG VE L + A + ++ L + + A + D+ D + RA
Sbjct: 19 GIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFA 78
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
G +L+NNA R F + +E + +VI+ + +
Sbjct: 79 EACERTLGCASILVNNAGQGRVSTFAETTDEAW-SEELQLKFFSVIHPVRAFLPQLESRA 137
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
+IV V+S+ SA++A + ++ R+MA E P +RVN + +V +
Sbjct: 138 -DAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQ 196
Query: 193 ----------GRTGWSDPAKAGPMLAKTPLGRFA 216
W+ + PLGR
Sbjct: 197 WRRRFEAREERELDWAQWTAQLARNKQIPLGRLG 230
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 154 bits (392), Expect = 1e-46
Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 15/199 (7%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV-- 79
+G +L +H +II+ A++ L+QA + D A + +
Sbjct: 38 RVGLHCALRLLEHGHRVIISYRTEHASVTELRQA--GAVALYGDFSCETGIMAFIDLLKT 95
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
+ +++NA+ + + + +F V++ A I+ + + I
Sbjct: 96 QTSSLRAVVHNASEWLAETPGEEADN--FTRMFSVHMLAPYLINLHCEPLLTASE-VADI 152
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
V++S + H Y A+KA L+S+T + A P ++VN + P ++M Q
Sbjct: 153 VHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAP-LVKVNGIAPALLMFQP----K 207
Query: 198 SDPAKAGPMLAKTPLGRFA 216
D A LAK+ LG
Sbjct: 208 DDAAYRANALAKSALGIEP 226
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 153 bits (390), Expect = 2e-46
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 9/201 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP--NVQTVQVDLQDWARTRAAVSKV- 79
GIG I + A +I + + A LD Q + D+ D AA ++
Sbjct: 22 GIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAE 81
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
PV +L+N+A +AR L+ D+ + VN+ + S+ + M+ G+I
Sbjct: 82 AVAPVSILVNSAGIARLHDALETDDATW-RQVMAVNVDGMFWASRAFGRAMVARG-AGAI 139
Query: 138 VNVSSIAGKTALEGHTI--YSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRT 195
VN+ S++G Y ASK A+ +TR +A E +RVN++ P V T+M
Sbjct: 140 VNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLK 199
Query: 196 GWSDPAKAGPMLAKTPLGRFA 216
P L TP+GR
Sbjct: 200 MRERPELFETWLDMTPMGRCG 220
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 153 bits (389), Expect = 3e-46
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 19/209 (9%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIGR I ++L+ A++ K +A + ++ + ++ +L+ A S
Sbjct: 18 GIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYS 77
Query: 78 KV----------GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKT 127
+ D+LINNA + + E+ D + VN KA I Q
Sbjct: 78 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFF-DRMVSVNAKAPFFIIQQALSR 136
Query: 128 MIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTV 187
+ D+ I+N+SS A + +L YS +K A++++T T+A +LG I VN++ P
Sbjct: 137 LRDN---SRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGF 193
Query: 188 VMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
V T M SDP + R
Sbjct: 194 VKTDMNAELLSDPMMKQYATTISAFNRLG 222
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 152 bits (387), Expect = 4e-46
Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 10/202 (4%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAFPNVQTVQVDLQDWAR-TRAAVSKVG 80
G VE L+Q ++ + + + N T+ + Q R A +
Sbjct: 12 FAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQHGE 71
Query: 81 PVDVLINNAAVAR---FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
+D +++N + R E + I +F+ I + Q + S+
Sbjct: 72 AIDTIVSNDYIPRPMNRLPLEGTSEAD-IRQMFEALSIFPILLLQSAIAPLRAAG-GASV 129
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVV---MTQMGR 194
+ ++S GK L + +Y ++AA ++ + A L I + ++ P
Sbjct: 130 IFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTS 189
Query: 195 TGWSDPAKAGPMLAKTPLGRFA 216
++P + PLGR
Sbjct: 190 DWENNPELRERVDRDVPLGRLG 211
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 151 bits (385), Expect = 7e-46
Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 9/189 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKV-- 79
G+GR + L + + + + L + V + DL A +
Sbjct: 14 GLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVE 73
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G +++++ A F E I + + N+ + I ++Q + + + G +
Sbjct: 74 WGGLPELVLHCAGTGEFGPVGVYTAEQ-IRRVMESNLVSTILVAQQTVRLIGERG--GVL 130
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM-GRTG 196
NV S A + ++Y ASK + ++ EL +R+ ++ P+ + ++ T
Sbjct: 131 ANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTD 190
Query: 197 WSDPAKAGP 205
DP+
Sbjct: 191 HVDPSGFMT 199
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 151 bits (384), Expect = 2e-45
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 12/201 (5%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIGR I ++ A ++ L A +++QA ++ ++ D A +
Sbjct: 23 GIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKA 82
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G + VL+NNA + D+ + + F +N+ ++ +SQ+ + M
Sbjct: 83 ALDQFGKITVLVNNAGGGG-PKPFDMPMSDF-EWAFKLNLFSLFRLSQLAAPHMQKAG-G 139
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G+I+N+SS+AG+ Y +SKAA++ +TR +A ++GP IRVN++ P + T
Sbjct: 140 GAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALA 199
Query: 195 TGWSDPAKAGPMLAKTPLGRF 215
T + + ML TPLGR
Sbjct: 200 TVLTPEIERA-MLKHTPLGRL 219
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 151 bits (383), Expect = 2e-45
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 15/203 (7%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKV 79
GIG+ IV+ L + ++ +++++A L LK+ + V D+ + + + V+
Sbjct: 13 GIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAA 72
Query: 80 ----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G +D L+ NA V +ID ++D+N +++++ + +
Sbjct: 73 VKGHGKIDSLVANAGVLEPVQNVNEIDVNA-WKKLYDINFFSIVSLVGIALPELKKTN-- 129
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G++V VSS A Y +SKAAL+ T+A E ++ +V P +V T M
Sbjct: 130 GNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIAVAPGIVDTDMQV 187
Query: 195 TGWSDPAKAGPMLAKTPLGRFAG 217
+ + ++ L F G
Sbjct: 188 NIRENVGPSS--MSAEQLKMFRG 208
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 151 bits (384), Expect = 2e-45
Identities = 35/204 (17%), Positives = 67/204 (32%), Gaps = 16/204 (7%)
Query: 23 GIGRCIVEKLSQHEAIII-----ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAA 75
+G + + ++ A AN D L+ V Q DL +
Sbjct: 22 NLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKL 81
Query: 76 VSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
G VD+ IN ++ E D++ +N K + +K M
Sbjct: 82 FDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEF-DAMDTINNKVAYFFIKQAAKHMNP- 139
Query: 132 KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
G I+ +++ ++ Y+ +KA ++ TR + EL I VN++ P + T
Sbjct: 140 --NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTS 197
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRF 215
++ +
Sbjct: 198 FFYGQ-ETKESTAFHKSQAMGNQL 220
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 150 bits (381), Expect = 3e-45
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 8/200 (4%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV- 79
GIGR I E+ + A I L +++ V TV+ D+ A +V
Sbjct: 18 GIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVI 77
Query: 80 ---GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGS 136
G D+L+NNA + F ++ E F++N+ + +++ M + G
Sbjct: 78 STFGRCDILVNNAGIYPLIPFDELTFEQW-KKTFEINVDSGFLMAKAFVPGMKRNG-WGR 135
Query: 137 IVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTG 196
I+N++S +E +T Y ++KAA TR +A +LG I VN++ P++V T
Sbjct: 136 IINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS 195
Query: 197 WSDPAKAGPMLAKTPLGRFA 216
+ R
Sbjct: 196 ALSAMFDVLPNMLQAIPRLQ 215
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 151 bits (384), Expect = 5e-45
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 24/215 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-------PNVQTVQVDLQDWARTRAA 75
GIGR ++ A + + + L+ KQ + V D+ + +
Sbjct: 37 GIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDI 96
Query: 76 VSKV----GPVDVLINNAAVARFDRFL--DIDEENLIDSIFDVNIKAVINISQVVSKTMI 129
++ G +D+L+NNA D D E F +N +AVI ++Q + +I
Sbjct: 97 INTTLAKFGKIDILVNNAGANLADGTANTDQPVELY-QKTFKLNFQAVIEMTQKTKEHLI 155
Query: 130 DHKIQGSIVNVSSI-AGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVV 188
K G IVNVSSI AG A G+ Y+ +KAALD TR A++L + +RVNSV P V
Sbjct: 156 KTK--GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAV 213
Query: 189 MTQM-GRTGWSDPAKAGP------MLAKTPLGRFA 216
T G G + A P+G
Sbjct: 214 ATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCG 248
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 149 bits (380), Expect = 5e-45
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 20/206 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG + A + + + Q T +D+ D A+ ++
Sbjct: 18 GIGYATALAFVEAGAKVTGFDQ------AFTQEQYPFATEVMDVADAAQVAQVCQRLLAE 71
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
+D L+N A + R + +E+ F VN+ N+ Q + G+IV
Sbjct: 72 TERLDALVNAAGILRMGATDQLSKEDW-QQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIV 129
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
V+S A T G + Y ASKAAL S+ ++ LEL +R N V P T M RT W
Sbjct: 130 TVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV 189
Query: 199 DPAKAGP--------MLAKTPLGRFA 216
PLG+ A
Sbjct: 190 SDDAEEQRIRGFGEQFKLGIPLGKIA 215
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 149 bits (380), Expect = 6e-45
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 13/205 (6%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
IG V L++ A II L + A ++ L+ +V +V +D+ + + AV
Sbjct: 24 NIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRS 83
Query: 79 V----GPVDVLINNAAVARFD-RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G VD+L+ A + + + D+ + D+N+ + Q V + M++ K
Sbjct: 84 VHEQEGRVDILVACAGICISEVKAEDMTDGQW-LKQVDINLNGMFRSCQAVGRIMLEQK- 141
Query: 134 QGSIVNVSSIAGKTA--LEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
QG IV + S++G + Y+ASKA + R++A E P+ IR N+V PT + T
Sbjct: 142 QGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETT 201
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRFA 216
+ R G P +A TP+GR
Sbjct: 202 LTRFGMEKPELYDAWIAGTPMGRVG 226
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 149 bits (379), Expect = 9e-45
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIAL---SKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV 79
GIGR I + ++ A++ + + +++ AF QVDL+D V +
Sbjct: 17 GIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAF-----FQVDLEDERERVRFVEEA 71
Query: 80 ----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQG 135
G VDVL+NNAA+A L + + +VN+ A +++S + ++ M G
Sbjct: 72 AYALGRVDVLVNNAAIAAPGSALTVRLPE-WRRVLEVNLTAPMHLSALAAREMRKVG-GG 129
Query: 136 SIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRT 195
+IVNV+S+ G A + + Y+ASK L ++TR++AL+L P IRVN+V P + T+
Sbjct: 130 AIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLE 189
Query: 196 GWS---DPAKAGP-MLAKTPLGRFA 216
+ DP + L R
Sbjct: 190 AIALSPDPERTRRDWEDLHALRRLG 214
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 149 bits (379), Expect = 1e-44
Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 11/203 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWARTRAAVSK 78
G+G+ + + ++ A ++ +T+ L+ K + TVQ+D+++ + + +
Sbjct: 17 GMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQ 76
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
+ G +D+LINNAA D+ +S+ ++ + SQ + K I+ I+
Sbjct: 77 IDEKFGRIDILINNAAGNFICPAEDLSVNG-WNSVINIVLNGTFYCSQAIGKYWIEKGIK 135
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGP-YNIRVNSVQPTVVMTQMG 193
G+I+N+ + A G +A+KA + ++T+T+A+E G Y IRVN++ P + G
Sbjct: 136 GNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGG 195
Query: 194 RTG-WSDPAKAGPMLAKTPLGRF 215
W A + PLGR
Sbjct: 196 ADKLWISEEMAKRTIQSVPLGRL 218
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 150 bits (381), Expect = 1e-44
Identities = 41/203 (20%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDS----LKQAFPN-VQTVQVDLQDWARTRAAVS 77
G+G+ + LS A + S+ L + + N V +Q D++D + VS
Sbjct: 37 GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 96
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
++ G +++INNAA + +I D+ + ++ + K +I +
Sbjct: 97 ELIKVAGHPNIVINNAAGNFISPTERLSPNA-WKTITDIVLNGTAFVTLEIGKQLIKAQK 155
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
+ +++++I +T +++KA ++++++++A E G Y +R N +QP + T+
Sbjct: 156 GAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGA 215
Query: 194 RTGWSDPAKAGP-MLAKTPLGRF 215
+ M+ + P GR
Sbjct: 216 FSRLDPTGTFEKEMIGRIPCGRL 238
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 149 bits (378), Expect = 2e-44
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 17/204 (8%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIG I ++L+ A + + +A + ++QA ++ D +D A+
Sbjct: 42 GIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIR 101
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +D+L+N+A + + + D + VN +A + S+ + D
Sbjct: 102 ETVEALGGLDILVNSAGIWHSAPLEETTVAD-FDEVMAVNFRAPFVAIRSASRHLGD--- 157
Query: 134 QGSIVNVSS-IAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G I+ + S +A G ++YSASKAAL +T+ +A +LGP I VN V P T M
Sbjct: 158 GGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDM 217
Query: 193 GRTGWSDPAKAGPMLAKTPLGRFA 216
+D A + G +
Sbjct: 218 NP---ADGDHAEAQRERIATGSYG 238
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 148 bits (377), Expect = 2e-44
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 11/203 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIA----LSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVS 77
GIG + A ++ + D L V+ V D+ A ++
Sbjct: 34 GIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +DVL+NNA + +D+ +E D + +V + +V+ ++ +
Sbjct: 94 QTVEKAGRLDVLVNNAGLGGQTPVVDMTDEE-WDRVLNVTLTSVMRATRAALRYFRGVDH 152
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G IVN +S+ G A + Y+A+KA + ++TR A+E + +R+N+V P++ +
Sbjct: 153 GGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFL 212
Query: 194 RTGWSDPAKAGPMLAKTPLGRFA 216
S + + GR A
Sbjct: 213 EKTSSSELLDR-LASDEAFGRAA 234
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 146 bits (371), Expect = 3e-44
Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 24/194 (12%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
+G + E+L + +I A + V VD+ + + +VG V
Sbjct: 14 TLGSAVKERLEKKAEVITA-GRHSG-------------DVTVDITNIDSIKKMYEQVGKV 59
Query: 83 DVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSS 142
D +++ A F ++ E + IN+ + ++ D +GS +
Sbjct: 60 DAIVSATGSATFSPLTELTPEK-NAVTISSKLGGQINLVLLGIDSLND---KGSFTLTTG 115
Query: 143 IAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSDPAK 202
I + + + + A+ + ++ A+E+ IR+N+V P V+ +
Sbjct: 116 IMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR-GIRINTVSPNVLEESWDKLEPFFEGF 174
Query: 203 AGPMLAKTPLGRFA 216
P + A
Sbjct: 175 LP-----VPAAKVA 183
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 148 bits (375), Expect = 4e-44
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 9/201 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWARTRAAVSK 78
G+G E L+ A +I L V D+ D AA SK
Sbjct: 20 GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSK 79
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
+ VD+LINNA + ++++ EN + D N+ + +S+ +K MI
Sbjct: 80 LDAEGIHVDILINNAGIQYRKPMVELELEN-WQKVIDTNLTSAFLVSRSAAKRMIARNSG 138
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G I+N+ S+ + A Y+A+K + +T +MA E +NI+ N++ P ++T M
Sbjct: 139 GKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNT 198
Query: 195 TGWSDPAKAGPMLAKTPLGRF 215
D + + TP R+
Sbjct: 199 ALIEDKQFDSWVKSSTPSQRW 219
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 148 bits (376), Expect = 4e-44
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
GIG + +L+ ++ D+ +VD+ D + A V
Sbjct: 40 GIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVA 99
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G VD L+ NA V +D E+ D + +N++ ++ + MI+ G+I
Sbjct: 100 AFGGVDKLVANAGVVHLASLIDTTVED-FDRVIAINLRGAWLCTKHAAPRMIERG-GGAI 157
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
VN+SS+AG+ A+ G Y SKA + ++R A EL IR N++ P V T M +T
Sbjct: 158 VNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAM 217
Query: 198 SDPAKAGP-----MLAKTPLGRFA 216
+ A + GR A
Sbjct: 218 AMFDGALGAGGARSMIARLQGRMA 241
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 147 bits (374), Expect = 6e-44
Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 12/205 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKV-- 79
G G + ++ ++ A ++ + + +A + + V D+ A AAV
Sbjct: 20 GFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALS 79
Query: 80 --GPVDVLINNAAVARFDRFL-DIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK---I 133
G VD+L+NNA + + ++ E D I VN++ V ++ + ++
Sbjct: 80 KFGKVDILVNNAGIGHKPQNAELVEPEE-FDRIVGVNVRGVYLMTSKLIPHFKENGAKGQ 138
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM- 192
+ I+NV+S Y+A+K + S+T+ +A+EL P IRV ++ P T +
Sbjct: 139 ECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLL 198
Query: 193 -GRTGWSDPAKAGPMLAKTPLGRFA 216
G P+GR
Sbjct: 199 TTFMGEDSEEIRKKFRDSIPMGRLL 223
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 147 bits (374), Expect = 8e-44
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 20/211 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
G+GR +V++ A + L K+ L L+ A N V D++ + A +
Sbjct: 16 GLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLA 75
Query: 80 --GPVDVLINNAAVARFDRFL-DIDEENLI---DSIFDVNIKAVINISQVVSKTMIDHKI 133
G +D LI NA + + L D+ E+ + D IF VN+K I+ + ++ +
Sbjct: 76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR- 134
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM- 192
GS+V S AG G +Y+A+K A+ + R MA EL P ++RVN V P + T +
Sbjct: 135 -GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAP-HVRVNGVAPGGMNTDLR 192
Query: 193 -------GRTGWSDPAKAGPMLAKTPLGRFA 216
S A + + P+GR
Sbjct: 193 GPSSLGLSEQSISSVPLADMLKSVLPIGRMP 223
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 147 bits (373), Expect = 1e-43
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 32/224 (14%)
Query: 23 GIGRCIVEKLSQHEAIIIAL----------SKTQANLDSLKQAFPNVQ-------TVQVD 65
G GR +++ A IIA+ A+ D L + V+ VD
Sbjct: 22 GQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVD 81
Query: 66 LQDWARTRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINIS 121
+D+ R R V G +D+++ NA VA + DI E+ + D+N+ N
Sbjct: 82 TRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDF-RDVMDINVTGTWNTV 140
Query: 122 QVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVN 181
+ +I+ GSI+ +SS AG Y+ASK A+ + R A ELG ++IRVN
Sbjct: 141 MAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVN 200
Query: 182 SVQPTVVMTQM---------GRTGWSDPAKAGPMLAKTPLGRFA 216
SV P V T M G+ ++P + +L A
Sbjct: 201 SVHPGPVNTPMGSGDMVTAVGQAMETNPQLS-HVLTPFLPDWVA 243
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 147 bits (373), Expect = 1e-43
Identities = 50/224 (22%), Positives = 79/224 (35%), Gaps = 32/224 (14%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPN-VQTVQVDLQDWART---- 72
IG I +L Q ++ S+ A + L A + DL +
Sbjct: 22 RIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCC 81
Query: 73 ----RAAVSKVGPVDVLINNAAVARFDRFLDIDEENLI----------DSIFDVNIKAVI 118
+ G DVL+NNA+ L D+ N +F N A +
Sbjct: 82 EDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPL 141
Query: 119 NISQVVSKTMIDH----KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELG 174
+ + ++ + S+VN+ L G +Y+ +K AL +TR ALEL
Sbjct: 142 FLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELA 201
Query: 175 PYNIRVNSVQPTVVMTQMGRTGWSDPAKAGPMLAKTPLGRFAGK 218
P +IRVN+V P + + K PLG+
Sbjct: 202 PRHIRVNAVAPGLSLL----PPAMPQETQEEYRRKVPLGQSEAS 241
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 147 bits (373), Expect = 1e-43
Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 23 GIGRCIVEKLSQHEAIII-------ALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAA 75
GIGR ++ A + L +T+ + + + NV +V D+ A
Sbjct: 17 GIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEI 76
Query: 76 VSKV----GPVDVLINNAAVARFDR----FLDIDEENLIDSIFDVNIKAVINISQVVSKT 127
+S G +D+L+NNA A D E+ D+ ++N+++VI +++
Sbjct: 77 LSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESY-DATLNLNLRSVIALTKKAVPH 135
Query: 128 MIDHKIQGSIVNVSSIA-GKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPT 186
+ K G IVN+SSIA G A YS +KAA+D TR A++L + IRVNS+ P
Sbjct: 136 LSSTK--GEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPG 193
Query: 187 VVMTQM-GRTGWSDPAKAGP------MLAKTPLGRFA 216
+V T G + M P G
Sbjct: 194 LVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMG 230
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 146 bits (372), Expect = 2e-43
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 24/214 (11%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIG + L + A ++ A S A + +K + ++ D++
Sbjct: 29 GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFD 88
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +D+ ++N+ V F D+ EE D +F +N + +++ + + +
Sbjct: 89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEE-EFDRVFSLNTRGQFFVAREAYRHLTE--- 144
Query: 134 QGSIVNVSSIAGKT-ALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G IV SS K ++ H++YS SK A+DS R + + G I VN+V P +T M
Sbjct: 145 GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDM 204
Query: 193 ----------GRTGWSDPAKAGPMLAKTPLGRFA 216
T ++ + +PL R
Sbjct: 205 FHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNG 238
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 146 bits (371), Expect = 2e-43
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 14/204 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWARTRAAVSK 78
GIG+ + ++ A + ++ L + ++ D+ + R + +
Sbjct: 43 GIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQ 102
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
+ G +D+ + NA + LD+ E I D N+ V +Q ++ M+D +
Sbjct: 103 MTGELGGIDIAVCNAGIVSVQAMLDMPLEE-FQRIQDTNVTGVFLTAQAAARAMVDQGLG 161
Query: 135 GSIVNVSSIAGKTALEGHTI--YSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G+I+ +S++G + Y SKAA+ +T+ MA+EL P+ IRVNSV P + T++
Sbjct: 162 GTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTEL 221
Query: 193 GRTGWSDPAKAGPMLAKTPLGRFA 216
A K PLGR
Sbjct: 222 VEPLADYHAL---WEPKIPLGRMG 242
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 145 bits (369), Expect = 3e-43
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 15/204 (7%)
Query: 23 GIGRCIVEKLSQHEAII----IALSKTQANLDSLKQAFPNVQTVQVDL---QDWART-RA 74
G+G + A + + + A L + +D+ +DW R
Sbjct: 16 GLGAEAARQAVAAGARVVLADVLDEEGAATARELG---DAARYQHLDVTIEEDWQRVVAY 72
Query: 75 AVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
A + G VD L+NNA ++ E + ++N+ V + V M D
Sbjct: 73 AREEFGSVDGLVNNAGISTGMFLETESVER-FRKVVEINLTGVFIGMKTVIPAMKDAG-G 130
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
GSIVN+SS AG L + Y ASK + +++ A+ELG IRVNSV P + T M
Sbjct: 131 GSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM-- 188
Query: 195 TGWSDPAKAGPMLAKTPLGRFAGK 218
T + + TP+GR +
Sbjct: 189 TAETGIRQGEGNYPNTPMGRVGNE 212
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 145 bits (369), Expect = 3e-43
Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 17/204 (8%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIG+ E L++ A ++ ++ A + +V VD+ D +A +
Sbjct: 20 GIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADR 79
Query: 79 V----GPVDVLINNAAVA---RFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
G +D L+NNAA+ + D L ID E VN+ + ++ V K M
Sbjct: 80 TLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYY-KKFMSVNLDGALWCTRAVYKKMTKR 138
Query: 132 KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
G+IVN SS A Y +K ++ +T+ ++ ELG NIR+N++ P + T+
Sbjct: 139 G-GGAIVNQSSTAA---WLYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTE 194
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRF 215
RT ++ PL R
Sbjct: 195 ANRTTTPKEMVDD-IVKGLPLSRM 217
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 145 bits (368), Expect = 3e-43
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 14/206 (6%)
Query: 23 GIGRCIVEKLSQHEAII----IALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVS 77
G G I + + ++ + + A+ V V+ D+ D AA++
Sbjct: 13 GNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIA 72
Query: 78 KV----GPVDVLINNAAVARFDR---FLDIDEENLIDSIFDVNIKAVINISQVVSKTMID 130
G +DVL+NNA + E D + VN++ + + V M+
Sbjct: 73 ATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQ-FDKVMAVNVRGIFLGCRAVLPHMLL 131
Query: 131 HKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
G IVN++S+A A G + Y+ SK A+ +T+++A++ IR N+V P ++ T
Sbjct: 132 QG-AGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIET 190
Query: 191 QMGRTGWSDPAKAGPMLAKTPLGRFA 216
M + P +LA+ P
Sbjct: 191 PMTQWRLDQPELRDQVLARIPQKEIG 216
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 146 bits (370), Expect = 3e-43
Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIGR I +L + A ++ S A + LK+ +Q D+ + A
Sbjct: 32 GIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFD 91
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
K G +D +++N+ + + L++ +E D +F++N + ++Q K
Sbjct: 92 KAVSHFGGLDFVMSNSGMEVWCDELEVTQEL-FDKVFNLNTRGQFFVAQQGLKHCRRG-- 148
Query: 134 QGSIVNVSSIAG-KTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G I+ SSIA T + H +Y+ SKAA++ R A++ G + VN + P V T M
Sbjct: 149 -GRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDM 207
Query: 193 -----------GRTGWSDPAKAGPMLAKTPLGRFA 216
G G + PL R
Sbjct: 208 FDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIG 242
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 146 bits (370), Expect = 4e-43
Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 11/203 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKV-- 79
GIGR E +++ A ++ + + V+VD+ + V K
Sbjct: 38 GIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTA 97
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G VDVL+NNA + I EE D I VN+K + S+ V M + GSI
Sbjct: 98 KWGRVDVLVNNAGFGTTGNVVTIPEET-WDRIMSVNVKGIFLCSKYVIPVMRRNG-GGSI 155
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM----G 193
+N +S +A+ T Y ASK A+ S+TR MA++ IRVN+V P + +
Sbjct: 156 INTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIF 215
Query: 194 RTGWSDPAKAGPMLAKTPLGRFA 216
A+ + R
Sbjct: 216 AEAKDPAKLRSDFNARAVMDRMG 238
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 145 bits (369), Expect = 4e-43
Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDL---QDWAR-TRAAVSK 78
GIG IV A ++ K ++ +L+Q P + D+ D + +
Sbjct: 20 GIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRR 79
Query: 79 VGPVDVLINNAAVARFDRFL-DIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G +D ++NNA + + + + ++N+ ++++ + + G++
Sbjct: 80 FGRLDCVVNNAGHHPPPQRPEETSAQG-FRQLLELNLLGTYTLTKLALPYLRKSQ--GNV 136
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
+N+SS+ G Y A+K A+ ++T+ +AL+ PY +RVN + P + T +
Sbjct: 137 INISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELA 196
Query: 198 S----DPAKAGPMLAKTPLGRFA 216
+ A + PLGR
Sbjct: 197 ALMPDPRASIREGMLAQPLGRMG 219
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 145 bits (369), Expect = 5e-43
Identities = 55/224 (24%), Positives = 81/224 (36%), Gaps = 32/224 (14%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPN-VQTVQVDLQDWARTRAAV 76
IGR I KL Q ++ S A D L + N Q DL + A+
Sbjct: 34 RIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASC 93
Query: 77 SKV--------GPVDVLINNAAVARFDRFLDIDEENLI---------DSIFDVNIKAVIN 119
++ G DVL+NNA+ + D E+ + N A
Sbjct: 94 EEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFL 153
Query: 120 ISQVVSKTMIDHKI-----QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELG 174
++ ++ SIVN+ ++Y+ K AL +T++ ALEL
Sbjct: 154 LTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALELA 213
Query: 175 PYNIRVNSVQPTVVMTQMGRTGWSDPAKAGPMLAKTPLGRFAGK 218
PY IRVN V P V + + + K K PLGR
Sbjct: 214 PYGIRVNGVAPGVSLLPV---AMGEEEKDK-WRRKVPLGRREAS 253
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 145 bits (367), Expect = 6e-43
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG +V ++A + A P++ TV D+ V +
Sbjct: 39 GIGAGLVRAYRDRNYRVVA-----TSRSIKPSADPDIHTVAGDISKPETADRIVREGIER 93
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
G +D L+NNA V F+++ +E+ D VN+ +I+Q + M+ G IV
Sbjct: 94 FGRIDSLVNNAGVFLAKPFVEMTQEDY-DHNLGVNVAGFFHITQRAAAEMLKQG-SGHIV 151
Query: 139 NVSSIAGKTALEGHT--IYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTG 196
++++ + G + S +K L+++TR++A+E +RVN+V P V+ T M
Sbjct: 152 SITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPM---- 207
Query: 197 WSDPAKAGPMLAKTPLGRF 215
+ P+GR
Sbjct: 208 -HPAETHSTLAGLHPVGRM 225
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 145 bits (369), Expect = 6e-43
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIG I L+ I + L V ++ DL D + +A V
Sbjct: 40 GIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVD 99
Query: 78 KV----GPVDVLINNAAVARFDR--FLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
V G +D L+NNA +A R FLD+ EN D+I VN++ + +Q V K M+
Sbjct: 100 AVVAEFGRIDCLVNNAGIASIVRDDFLDLKPEN-FDTIVGVNLRGTVFFTQAVLKAMLAS 158
Query: 132 KIQ--GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVM 189
+ SI+N++S++ Y SKA L + ++ +AL L I V V+P ++
Sbjct: 159 DARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIR 218
Query: 190 TQMGRTGWSDPAKAGPMLAKTPLGRF 215
+ M S P+ R+
Sbjct: 219 SDMTAAV-SGKYDGLIESGLVPMRRW 243
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 144 bits (366), Expect = 7e-43
Identities = 44/217 (20%), Positives = 89/217 (41%), Gaps = 25/217 (11%)
Query: 23 GIGRCIVEKLSQHE---AIIIALSKTQANLDSLKQAFP------NVQTVQVDLQDWARTR 73
G GR + +L++ ++++ +++++ L LK+ V DL A +
Sbjct: 17 GFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQ 76
Query: 74 AAVSKV--------GPVDVLINNAAVARFDRFLDIDEENL--IDSIFDVNIKAVINISQV 123
+S V +LINNAA ++ +L +++ + +N+ +++ ++
Sbjct: 77 RLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSG 136
Query: 124 VSKTMIDHK-IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNS 182
D + ++VN+SS+ +G +Y A KAA D + + +A E ++RV S
Sbjct: 137 TLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAE--EPSVRVLS 194
Query: 183 VQPTVVMTQMG---RTGWSDPAKAGPMLAKTPLGRFA 216
P + M R DP + G
Sbjct: 195 YAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALV 231
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 144 bits (366), Expect = 8e-43
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 18/208 (8%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAF----PNVQTVQVDLQDWARTRAAVS 77
GIG ++ A + + K AN+D + + DL + V
Sbjct: 18 GIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVD 77
Query: 78 KV----GPVDVLINNAAV-ARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
+ G +DVLINNA +ID+ D++ D NI++V+ ++ +
Sbjct: 78 EFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFY-DAVMDANIRSVVMTTKFALPHLAAAA 136
Query: 133 IQ----GSIVNVSSIAGKTA-LEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTV 187
++++ SIAG T G +Y A+KA L ++ + +R N V P
Sbjct: 137 KASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGT 196
Query: 188 VMTQMGRTGWSDPAKAGPMLAKTPLGRF 215
V T + P+GRF
Sbjct: 197 VDTAF--HADKTQDVRDRISNGIPMGRF 222
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 144 bits (366), Expect = 8e-43
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 25/217 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLD----SLKQAFPNVQTVQVDLQDWARTRAAVSK 78
IG +L++ I L + L+ S+++ ++ D+ V
Sbjct: 18 NIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDS 77
Query: 79 V----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G +D L NNA F D ++ + +N+ ++ + VS+ MI
Sbjct: 78 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDF-ARVLTINVTGAFHVLKAVSRQMITQN- 135
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G IVN +S+AG Y SK A+ ++T T AL+L PYNIRVN++ P +
Sbjct: 136 YGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFM 195
Query: 194 RTGWSDPAKAGP--------------MLAKTPLGRFA 216
+ M+ P+ R+
Sbjct: 196 WERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYG 232
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 144 bits (366), Expect = 8e-43
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 17/204 (8%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
IGR + +Q A ++ + A + +++ + ++ DL + A AA+S
Sbjct: 19 DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAIS 78
Query: 78 KV----GPVDVLINNAA-VARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
G + L++ A + ++DE + DVN+ ++ ++ M
Sbjct: 79 AAADKFGEIHGLVHVAGGLIARKTIAEMDEAF-WHQVLDVNLTSLFLTAKTALPKMAK-- 135
Query: 133 IQGSIVNVSSIAGKT-ALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
G+IV SS AG+ G Y+ SK A+ + TR +A E+GP IRVN+V P ++ T
Sbjct: 136 -GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-KIRVNAVCPGMISTT 193
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRF 215
T + P + T L R
Sbjct: 194 FHDTF-TKPEVRERVAGATSLKRE 216
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 144 bits (367), Expect = 8e-43
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 10/201 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSL-KQAFPNVQTVQVDLQDWARTRAAVSKV-- 79
GIG L++ A ++ + +L VDL + RA +
Sbjct: 22 GIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTID 81
Query: 80 --GPVDVLINNAAVARF--DRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQG 135
G +D++ NNAA + + + D F VN + + + + +I G
Sbjct: 82 TFGRLDIVDNNAAHSDPADMLVTQMTVDV-WDDTFTVNARGTMLMCKYAIPRLISAG-GG 139
Query: 136 SIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRT 195
+IVN+SS A + T Y+ +KAA++++TR +A + G + +R N++ P +V T
Sbjct: 140 AIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEV 199
Query: 196 GWSDPAKAGPMLAKTPLGRFA 216
G P GR
Sbjct: 200 GLPQPIVDI-FATHHLAGRIG 219
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 144 bits (365), Expect = 8e-43
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 13/204 (6%)
Query: 23 GIGRCIVEKLSQHEAII----IALSKTQANLDSLKQAFPNVQTVQVDL---QDWART-RA 74
GIG I K + A + + S+ +Q Q D W + A
Sbjct: 17 GIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP-DQIQFFQHDSSDEDGWTKLFDA 75
Query: 75 AVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
GPV L+NNA +A + + VN+ V +++ + M + +
Sbjct: 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAE-WRKLLAVNLDGVFFGTRLGIQRMKNKGLG 134
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELG--PYNIRVNSVQPTVVMTQM 192
SI+N+SSI G Y+ASK A+ ++++ AL+ Y++RVN+V P + T +
Sbjct: 135 ASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPL 194
Query: 193 GRTGWSDPAKAGPMLAKTPLGRFA 216
+A KTP+G
Sbjct: 195 VD-DLPGAEEAMSQRTKTPMGHIG 217
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 145 bits (367), Expect = 9e-43
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 15/206 (7%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIG + ++ + A ++ A+ + ++ ++ + D+ + A A S
Sbjct: 37 GIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFS 96
Query: 78 KV----GPVDVLINNAAVARFD-RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
V G +D L+NNA + + R ++ E I+ + VN+ I + + M
Sbjct: 97 AVDRQFGRLDGLVNNAGIVDYPQRVDEMSVER-IERMLRVNVTGSILCAAEAVRRMSRLY 155
Query: 133 IQ--GSIVNVSSIAGKTALEG-HTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVM 189
G+IVNVSS+A + Y+ASKAA+D+ T +A E+ IRVN+V+P ++
Sbjct: 156 SGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIE 215
Query: 190 TQMGRTGWSDPAKAGPMLAKTPLGRF 215
T + +G P +A M P+ R
Sbjct: 216 TDLHASG-GLPDRAREMAPSVPMQRA 240
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 144 bits (366), Expect = 9e-43
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 21/213 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLD----SLKQAFP-NVQTVQVDLQDWARTRAAVS 77
GIG I E ++ A I+ +++ L SLK+ F V V VD+ A V
Sbjct: 18 GIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVE 77
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G D+L+NNA + ++ +E +++ + A + +++ + M
Sbjct: 78 SVRSSFGGADILVNNAGTGSNETIMEAADEKW-QFYWELLVMAAVRLARGLVPGMRARG- 135
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G+I++ +SI L IY+ +KAAL ++T+A E+ NIRVN + P +++T
Sbjct: 136 GGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDW 195
Query: 194 RTGWSDPAKAGP----------MLAKTPLGRFA 216
+ K P+ RFA
Sbjct: 196 IKTAKELTKDNGGDWKGYLQSVADEHAPIKRFA 228
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 145 bits (367), Expect = 1e-42
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 25/215 (11%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIGR + +L + +I A S A + ++K+ + V+ ++
Sbjct: 40 GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFE 99
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +D++ +N+ V F D+ E D +F +N + +++ K +
Sbjct: 100 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEE-FDRVFTINTRGQFFVAREAYKHLEIG-- 156
Query: 134 QGSIVNVSSIAGK-TALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G ++ + SI G+ A+ H +YS SK A+++ R MA+++ I VN V P + T M
Sbjct: 157 -GRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDM 215
Query: 193 -----------GRTGWSDPAKAGPMLAKTPLGRFA 216
G ++ + +PL R
Sbjct: 216 YHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVG 250
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 144 bits (365), Expect = 2e-42
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 12/203 (5%)
Query: 23 GIGRCIVEKLSQHEA-IIIA---LSKTQANLDSLKQAFPN-VQTVQVDLQDWARTRAAVS 77
GIG I E +H +IA L + L A + +D++ AAV
Sbjct: 38 GIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVD 97
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +D+LIN AA + ++ D++ N+S+V+ +
Sbjct: 98 QALKEFGRIDILINCAAGNFLCPAGALSFNA-FKTVMDIDTSGTFNVSRVLYEKFFRDH- 155
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G IVN+++ G ++KAA+D++TR +A+E GP NIRVNS+ P + G
Sbjct: 156 GGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEG 215
Query: 194 RTGWSDPAKAGP-MLAKTPLGRF 215
P + + +PL R
Sbjct: 216 LRRLGGPQASLSTKVTASPLQRL 238
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 141 bits (359), Expect = 6e-42
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 10/193 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
G+G IV+ LS+ + I+ AL + +L +L + V+ ++ D+ V K+
Sbjct: 16 GMGIEIVKDLSR-DHIVYALGRNPEHLAALAEI-EGVEPIESDIVKEVLEEGGVDKLKNL 73
Query: 80 GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVN 139
VD L++ AAVAR + D+N+ +S+ + + G ++
Sbjct: 74 DHVDTLVHAAAVARDTTIEAGSVAEW-HAHLDLNVIVPAELSRQLLPALRAAS--GCVIY 130
Query: 140 VSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSD 199
++S AG G+TIY+ASK AL + E IRV++V P T M + G D
Sbjct: 131 INSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQ-GLMD 189
Query: 200 PAKAGPMLAKTPL 212
+ +
Sbjct: 190 SQGTN-FRPEIYI 201
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 142 bits (361), Expect = 7e-42
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 8/199 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLD---SLKQAFPNVQTVQVDLQDWARTRAAVSKV 79
GIGR I ++ A ++A +T + + + + V DL D ++
Sbjct: 42 GIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEEL 101
Query: 80 ---GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGS 136
VDVL+NNA + ++ + VN+ A +S+ M+ H G
Sbjct: 102 AATRRVDVLVNNAGIIARAPAEEVSLGR-WREVLTVNLDAAWVLSRSFGTAMLAHG-SGR 159
Query: 137 IVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTG 196
IV ++S+ Y+ASK A+ +TR +A E + VN++ P V+T
Sbjct: 160 IVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAAL 219
Query: 197 WSDPAKAGPMLAKTPLGRF 215
+D +A + A+ P GR+
Sbjct: 220 RADDERAAEITARIPAGRW 238
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 142 bits (360), Expect = 8e-42
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 14/199 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDL---QDWART-RAAVS 77
G+G V + A ++ ++ + V +D+ W AV+
Sbjct: 18 GMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT 77
Query: 78 KVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G + VL+NNA + D I DVN+ V + V K M + +GSI
Sbjct: 78 AFGGLHVLVNNAGILNIGTIEDYALTE-WQRILDVNLTGVFLGIRAVVKPMKEAG-RGSI 135
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
+N+SSI G Y+A+K A+ +T++ ALELGP IRVNS+ P +V T M
Sbjct: 136 INISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT---- 191
Query: 198 SDPAKAGPMLAKTPLGRFA 216
+ +T LGR A
Sbjct: 192 ---DWVPEDIFQTALGRAA 207
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 142 bits (361), Expect = 8e-42
Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 27/229 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIAL-------------SKTQANLD----SLKQAFPNVQTVQVD 65
G GR +L+ A IIA + +LD ++ T +D
Sbjct: 26 GQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLD 85
Query: 66 LQDWARTRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINIS 121
++D A R V+ G +DV++ NA V + R ++ +E D++ VN+
Sbjct: 86 VRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQW-DTVIGVNLTGTWRTL 144
Query: 122 QVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVN 181
+ MI+ GSIV VSS AG A G+ YSASK L ++T T+A+ELG Y IRVN
Sbjct: 145 RATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVN 204
Query: 182 SVQPTVVMTQMGRTGWSDPAKAGPMLAKTPLGRFAGKLKPKPWNRWLLP 230
S+ P V T M +P + A+ P + P N ++
Sbjct: 205 SIHPYSVETPMI-----EPEAMMEIFARHPSFVHSFPPMPVQPNGFMTA 248
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 141 bits (358), Expect = 1e-41
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 14/181 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQ-------AFPNVQTVQVDLQDWARTRAA 75
GIG I L+ ++ +++++ NL+ + + +D+ D +
Sbjct: 18 GIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTE 77
Query: 76 VSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
+ + G VD+L+N AA+ + + I ++N+ A I + V++ M
Sbjct: 78 IKDIHQKYGAVDILVNAAAMFMDGSLSEPVDN--FRKIMEINVIAQYGILKTVTEIMKVQ 135
Query: 132 KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
K G I NV+S A K IY ++K AL + ++ EL P IRV ++ P V T
Sbjct: 136 K-NGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD 194
Query: 192 M 192
M
Sbjct: 195 M 195
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 142 bits (360), Expect = 3e-41
Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 25/226 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIAL------------SKTQANLDSLKQAFPN----VQTVQVDL 66
G GR +L+Q A I+A+ + L + + Q D+
Sbjct: 57 GQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADV 116
Query: 67 QDWARTRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQ 122
+D A +A V + G +D+L++N ++ + + ++ D + N+ + +
Sbjct: 117 RDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDIL-QTNLIGAWHACR 175
Query: 123 VVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNS 182
V +MI+ GS++ VSS G G + Y+ASK + + ++A E+G +NIRVNS
Sbjct: 176 AVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNS 235
Query: 183 VQPTVVMTQM----GRTGWSDPAKAGPMLAKTPLGRFAGKLKPKPW 224
V P V T+M P P L P PW
Sbjct: 236 VNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPW 281
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 140 bits (355), Expect = 3e-41
Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 15/204 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
G +LS+ + ++ D L+ Q+ + V
Sbjct: 12 FGGMGSALRLSEAGHTVACHDESFKQKDELEAF--AETYPQLKPMSEQEPAELIEAVTSA 69
Query: 80 -GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G VDVL++N A F E+ + + V+ M K G I
Sbjct: 70 YGQVDVLVSNDIFAPEFQPIDKYAVEDY-RGAVEALQIRPFALVNAVASQMKKRK-SGHI 127
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM----- 192
+ ++S + + Y++++A ++ ++ ELG YNI V ++ P + ++
Sbjct: 128 IFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFY 187
Query: 193 -GRTGWSDPAKAGPMLAKTPLGRF 215
++P + T L R
Sbjct: 188 PTEPWKTNPEHVAHVKKVTALQRL 211
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 140 bits (356), Expect = 3e-41
Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 23/207 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIGR I E+ + +I L ++ D+ + + +A++ +
Sbjct: 19 GIGRAIAERFVDEGSKVIDL-------SIHDPGEAKYDHIECDVTNPDQVKASIDHIFKE 71
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
G + VL+NNA + + + + I DVN+ S+ MI + SIV
Sbjct: 72 YGSISVLVNNAGIESYGKIESMSMGEW-RRIIDVNLFGYYYASKFAIPYMIRSR-DPSIV 129
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
N+SS+ + + Y SK A+ +T+++AL+ P +R N+V P + T + R
Sbjct: 130 NISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP-LLRCNAVCPATIDTPLVRKAAE 188
Query: 199 DPAKAGP---------MLAKTPLGRFA 216
+ P + P+ R
Sbjct: 189 LEVGSDPMRIEKKISEWGHEHPMQRIG 215
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 139 bits (353), Expect = 4e-41
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG L + +++ + L +L + D+++ AV+ +
Sbjct: 16 GIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEA 75
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
G + L+NNA V ++ E + D N+ + ++ G+IV
Sbjct: 76 FGELSALVNNAGVGVMKPVHELTLEE-WRLVLDTNLTGAFLGIRHAVPALLRRG-GGTIV 133
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
NV S+AGK +G Y+ASK L + L+L N+RV +V P V T
Sbjct: 134 NVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGF 187
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 139 bits (353), Expect = 5e-41
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 22/208 (10%)
Query: 23 GIGRCIVEKLSQHEA---IIIALSKTQANLDSLKQAFPNVQT--VQVDL-QDWARTRAAV 76
GIG +L + +I+ + L LK P V D+ A ++ +
Sbjct: 16 GIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLL 75
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
K+ VD+LIN A + ++ I+ +N ++N + + K
Sbjct: 76 KKIFDQLKTVDILINGAGILD---------DHQIERTIAINFTGLVNTTTAILDFWDKRK 126
Query: 133 I--QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
G I N+ S+ G A+ +YSASKAA+ S T ++A + S+ P + T
Sbjct: 127 GGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRT 186
Query: 191 QMGRTGWSDPAKAGPMLAKTPLGRFAGK 218
+ T ++ P +A+ L
Sbjct: 187 PLVHT-FNSWLDVEPRVAELLLSHPTQT 213
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 139 bits (352), Expect = 8e-41
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 13/205 (6%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIGR I +K + +++ + + L + + N + L+ V V+ D+ V +
Sbjct: 18 GIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRR 77
Query: 79 V----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+DVL NNA + ++ +E + + VN+ + S+ V M+
Sbjct: 78 TFETYSRIDVLCNNAGIMDGVTPVAEVSDELW-ERVLAVNLYSAFYSSRAVIPIMLKQG- 135
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
+G IVN +SIAG Y+ +K L +TR++A G IR +V P V T +G
Sbjct: 136 KGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIG 195
Query: 194 RTGW--SDPAKAGPMLAKTPLGRFA 216
S+ + R A
Sbjct: 196 LGSSKPSELGMRTLTKLMSLSSRLA 220
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 139 bits (353), Expect = 9e-41
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 19/211 (9%)
Query: 23 GIGRCIVEKLSQHEAII----IALSKTQANLDSLKQAFPNVQ--TVQVDLQDWARTRAAV 76
G+GR +L+ A + ++ +A+ ++ + P+ + T D+ D A+ A V
Sbjct: 24 GLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYV 83
Query: 77 SKV----GPVDVLINNAAVA-RFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
+ G +D NNA + + + D + +N++ V + V K M +
Sbjct: 84 TATTERFGRIDGFFNNAGIEGKQNPTESFTAAEF-DKVVSINLRGVFLGLEKVLKIMREQ 142
Query: 132 KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
G +VN +S+ G + + Y+A+K + +TR A+E G Y IR+N++ P + T
Sbjct: 143 G-SGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTP 201
Query: 192 MGRTGWSDPAKAGP------MLAKTPLGRFA 216
M P + P R+
Sbjct: 202 MVENSMKQLDPENPRKAAEEFIQVNPSKRYG 232
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 140 bits (354), Expect = 2e-40
Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 18/208 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDS----LKQAFPN-----VQTVQVDLQDWARTR 73
GIG+ IV++L + + ++ S+ L S L+ P V +Q ++++
Sbjct: 29 GIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88
Query: 74 AAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMI 129
V G ++ L+NN I + ++ + N+ + + V + +
Sbjct: 89 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKG-WHAVLETNLTGTFYMCKAVYSSWM 147
Query: 130 DHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVM 189
GSIVN+ K A++A + ++T+++ALE IR+N V P V+
Sbjct: 148 KEH-GGSIVNIIV-PTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIY 205
Query: 190 TQMG--RTGWSDPAKAGPMLAKTPLGRF 215
+Q G + K P R
Sbjct: 206 SQTAVENYGSWGQSFFEGSFQKIPAKRI 233
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 138 bits (350), Expect = 2e-40
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 14/197 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG+ I + + + + + PN+ D+ D + V
Sbjct: 13 GIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEK 72
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
+DVL+NNA + E D I V +KA +S++ +I +K G I+
Sbjct: 73 LQRIDVLVNNACRGSKGILSSLLYEE-FDYILSVGLKAPYELSRLCRDELIKNK--GRII 129
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
N++S + Y+++K + ++T +A+ LGP ++ VN + P +
Sbjct: 130 NIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVTE----QQ 184
Query: 199 DPAKAGPMLAKTPLGRF 215
+ + A P G+
Sbjct: 185 EFTQE--DCAAIPAGKV 199
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 138 bits (351), Expect = 2e-40
Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 26/226 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIAL------------SKTQANLDSLKQAFPN----VQTVQVDL 66
G+GR L++ A I T +L + +VD+
Sbjct: 21 GMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDV 80
Query: 67 QDWARTRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQ 122
+D A + V++ G +D+ I NA ++ +++ + I N+ N
Sbjct: 81 KDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVI-GTNLTGTFNTIA 139
Query: 123 VVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNS 182
V+ MI G IV VSS+ G +A Y +SK + +T+ A +L Y I VN+
Sbjct: 140 AVAPGMIKRN-YGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNA 198
Query: 183 VQPTVVMTQM----GRTGWSDPAKAGPMLAKTPLGRFAGKLKPKPW 224
V P + T M G P P L + L+ P+
Sbjct: 199 VAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPF 244
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 136 bits (346), Expect = 3e-40
Identities = 33/188 (17%), Positives = 73/188 (38%), Gaps = 5/188 (2%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKV-G 80
G+G + + ++++ L ++ NV DL ++
Sbjct: 12 GLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDS 71
Query: 81 PVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNV 140
++++A F + D E I ++ + N+ + IN+ + + K D ++V +
Sbjct: 72 IPSTVVHSAGSGYFGLLQEQDPEQ-IQTLIENNLSSAINVLRELVKRYKDQP--VNVVMI 128
Query: 141 SSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSDP 200
S A + + Y A K A+ + ++ LEL +++ +V P + T+ T
Sbjct: 129 MSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSGKSL 188
Query: 201 AKAGPMLA 208
+ M A
Sbjct: 189 DTSSFMSA 196
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 138 bits (350), Expect = 5e-40
Identities = 67/227 (29%), Positives = 97/227 (42%), Gaps = 26/227 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIAL------------SKTQANLDS----LKQAFPNVQTVQVDL 66
G GR L++ A IIA+ T +L ++ + QVD+
Sbjct: 39 GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDV 98
Query: 67 QDWARTRAAVSKV----GPVDVLINNAAVARF-DRFLDIDEENLIDSIFDVNIKAVINIS 121
+D+ +AAV G +D+++ NAA+A R +D + + DVN+ +
Sbjct: 99 RDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTW-RDMIDVNLNGAWITA 157
Query: 122 QVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVN 181
+V ++ K GSIV SSI G E Y ASK L + RTMALELGP NIRVN
Sbjct: 158 RVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVN 217
Query: 182 SVQPTVVMTQM----GRTGWSDPAKAGPMLAKTPLGRFAGKLKPKPW 224
V P+ V T M P P + + + P P+
Sbjct: 218 IVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPY 264
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 137 bits (348), Expect = 5e-40
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 22/207 (10%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDL---QDWART-RAAVSK 78
GIG +V+ L ++ A +++ + S ++D+ ++ K
Sbjct: 25 GIGLAVVDALVRYGAKVVS---VSLDEKSDVNV---SDHFKIDVTNEEEVKEAVEKTTKK 78
Query: 79 VGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
G +D+L+NNA + ++ E I DVN+ +++ M+ GSI+
Sbjct: 79 YGRIDILVNNAGIEQYSPLHLTPTEIW-RRIIDVNVNGSYLMAKYTIPVMLAIG-HGSII 136
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
N++S+ A + Y SK AL +TR++A++ P IR N+V P +MT M
Sbjct: 137 NIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMVIKAAK 195
Query: 199 DPAKAGP---------MLAKTPLGRFA 216
+ P+GR
Sbjct: 196 MEVGEDENAVERKIEEWGRQHPMGRIG 222
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 137 bits (348), Expect = 6e-40
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 12/203 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-----NVQTVQVDLQDWARTRAAVS 77
G+G I + L++ ++ S+ Q + D+ ++ + +
Sbjct: 32 GLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 91
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G +D ++N A + R + + + +VN+ + + + +
Sbjct: 92 AVKEKFGKLDTVVNAAGINRRHPAEEFPLDEF-RQVIEVNLFGTYYVCREAFSLLRESD- 149
Query: 134 QGSIVNVSSIAG-KTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
SI+N+ S+ + + + Y+ASK + S+T+ +A E G Y IRVN + P T+M
Sbjct: 150 NPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM 209
Query: 193 GRTGWSDPAKAGPMLAKTPLGRF 215
+SDP K ML + PLGR
Sbjct: 210 TEAVFSDPEKLDYMLKRIPLGRT 232
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 137 bits (348), Expect = 6e-40
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQ---AFPNVQTVQVDLQDWARTRAAVSKV 79
GIG+ I + L + A + ++ A+ + Q + DL A R +
Sbjct: 40 GIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQAL 99
Query: 80 ----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ- 134
+D+L+NNA + + + +N+ +V + Q + +
Sbjct: 100 GELSARLDILVNNAGTSWGAALESYPVSGW-EKVMQLNVTSVFSCIQQLLPLLRRSASAE 158
Query: 135 --GSIVNVSSIAGKTALEGHTI-YSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
++N+ S+AG +A+ Y SKAAL ++R +A EL +I VN + P ++
Sbjct: 159 NPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSR 218
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRF 215
M R +DP A P+GR+
Sbjct: 219 MTRHIANDPQALEADSASIPMGRW 242
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 136 bits (346), Expect = 7e-40
Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 7/198 (3%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
GIG+ I +L+ A +I + + + + D+ D +A +++
Sbjct: 17 GIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQA 76
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G +D+L+NNA++ F + D+D ++ I DVN+ +++ + M G +
Sbjct: 77 LTGGIDILVNNASIVPFVAWDDVDLDHW-RKIIDVNLTGTFIVTRAGTDQMRAAGKAGRV 135
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
++++S Y A+K + TR +A ELG YNI N+V P ++ + +
Sbjct: 136 ISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKAS- 194
Query: 198 SDPAKAGPMLAKTPLGRF 215
G + +
Sbjct: 195 PHNEAFGFVEMLQAMKGK 212
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 136 bits (344), Expect = 9e-40
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 18/199 (9%)
Query: 23 GIGRCIVEKLSQHEA-------IIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWAR 71
GIGR I + ++ +++ S+T A+L+ + T+ D+ D A
Sbjct: 13 GIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMAD 72
Query: 72 TRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKT 127
R + + G +D L+NNA V RF D+ EE+ D + N+K ++Q +
Sbjct: 73 VRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDF-DYTMNTNLKGTFFLTQALFAL 131
Query: 128 MIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTV 187
M G I ++S+A A +IY SK + TM L N+R+ VQP
Sbjct: 132 MERQH-SGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGA 190
Query: 188 VMTQMGRTGWSDPAKAGPM 206
V T M D +A M
Sbjct: 191 VYTPMWGK-VDDEMQALMM 208
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 136 bits (346), Expect = 1e-39
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 19/210 (9%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQA--NLDSLKQAFP-NVQTVQVDLQDWARTRAAVS 77
GIG ++ A +I S A + + + F + Q D+ + +
Sbjct: 25 GIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ 84
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
++ GP+ LI NA V+ ++ E+ ++DVN+ V N + V+K + +
Sbjct: 85 QIDADLGPISGLIANAGVSVVKPATELTHEDF-AFVYDVNVFGVFNTCRAVAKLWLQKQQ 143
Query: 134 QGSIVNVSSIAGKTALE-------GHTIYSASKAALDSITRTMALELGPYNIRVNSVQPT 186
+GSIV SS++ + + Y++SKAA ++ + +A E IRVN++ P
Sbjct: 144 KGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPG 203
Query: 187 VVMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
V T T D + PL RFA
Sbjct: 204 YVNTDQ--TAHMDKKIRDHQASNIPLNRFA 231
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 136 bits (345), Expect = 2e-39
Identities = 60/242 (24%), Positives = 86/242 (35%), Gaps = 51/242 (21%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPN-VQTVQVDLQDWARTR--- 73
+GR I E L + S +AN +L PN TVQ DL + A
Sbjct: 20 RLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSG 79
Query: 74 ------------------AAVSKVGPVDVLINNAAVARFDRFLDIDEE------------ 103
A + G DVL+NNA+ L DE+
Sbjct: 80 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAM 139
Query: 104 -NLIDSIFDVNIKAVINISQVVSKTMIDHKIQ-----GSIVNVSSIAGKTALEGHTIYSA 157
+F N A + + + + + SI+N+ L G+TIY+
Sbjct: 140 ETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTM 199
Query: 158 SKAALDSITRTMALELGPYNIRVNSVQP-TVVMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
+K AL+ +TR+ ALEL P IRVN V P V+ G +K PL +
Sbjct: 200 AKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV----DDMPPAVWEG-HRSKVPLYQRD 254
Query: 217 GK 218
Sbjct: 255 SS 256
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 136 bits (344), Expect = 2e-39
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 29/214 (13%)
Query: 23 GIGRCIVEKLSQHEAII----IALSKTQANLDSLKQAFP--NVQTVQVDLQDWARTRAAV 76
GIGR E L A + L +L + F +Q D+ D + R
Sbjct: 18 GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTF 77
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
KV G +D+L+NNA V + + +N+ +VI+ + + M
Sbjct: 78 RKVVDHFGRLDILVNNAGVNNEKNW---------EKTLQINLVSVISGTYLGLDYMSKQN 128
Query: 133 I--QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMAL--ELGPYNIRVNSVQPTVV 188
G I+N+SS+AG + +Y ASK + TR+ AL L +R+N++ P V
Sbjct: 129 GGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFV 188
Query: 189 MTQMGRTGWSDPAKAGP------MLAKTPLGRFA 216
T + + + +
Sbjct: 189 NTAILESIEKEENMGQYIEYKDHIKDMIKYYGIL 222
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 134 bits (341), Expect = 2e-39
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 11/199 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTR---AAVSKV 79
GIGR I E L + N + Q+ + DL+ A+ +
Sbjct: 13 GIGRAIAEALVARGYRVAI---ASRNPEEAAQSL-GAVPLPTDLEKDDPKGLVKRALEAL 68
Query: 80 GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVN 139
G + VL++ AAV L++ E + +++ ++Q + M + G ++
Sbjct: 69 GGLHVLVHAAAVNVRKPALELSYEEW-RRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLF 126
Query: 140 VSSIAGKTALE--GHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
+ S+ TA Y+ +K AL +TR +A E IRVN + P V T+
Sbjct: 127 IGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLR 186
Query: 198 SDPAKAGPMLAKTPLGRFA 216
+P P+ A+ P+GR+A
Sbjct: 187 QNPELYEPITARIPMGRWA 205
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 136 bits (345), Expect = 2e-39
Identities = 58/237 (24%), Positives = 84/237 (35%), Gaps = 41/237 (17%)
Query: 23 GIGRCIVEKLSQHEAIIIAL------------SKTQANLDSLKQAF----PNVQTVQVDL 66
G GR KL++ A II T +L+ T +VD+
Sbjct: 21 GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDV 80
Query: 67 QDWARTRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQ 122
+D A ++ G +DV++ NA + L + FDV+ VIN
Sbjct: 81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQA---FADAFDVDFVGVINTVH 137
Query: 123 VVSKTMIDHKIQGSIVNVSSIAGKTALE-----------GHTIYSASKAALDSITRTMAL 171
+ SI+ S+AG A G YS +K +DS T +A
Sbjct: 138 AALPYLTS---GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAA 194
Query: 172 ELGPYNIRVNSVQPTVVMTQM----GRTGWSDPAKAGPMLAKTPLGRFAGKLKPKPW 224
+L P +IR N + PT V T M P P A L A + P P+
Sbjct: 195 QLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPY 251
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 136 bits (344), Expect = 3e-39
Identities = 41/204 (20%), Positives = 77/204 (37%), Gaps = 15/204 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-----NVQTVQVDLQDWARTRAAVS 77
G+GR I + LS ++ + LD+ V+ V D+ D + A +
Sbjct: 44 GVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103
Query: 78 KV----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
V +D+L+NNA ++ E + I N+ +Q + M
Sbjct: 104 AVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQ-WNGIVAANLTGAFLCTQHAFRMMKAQT 162
Query: 133 IQ-GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
+ G I+N SI+ +T Y+A+K A+ +T++ AL+ ++I + T
Sbjct: 163 PRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATD 222
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRF 215
M + +A +
Sbjct: 223 MTARMSTGVLQA---NGEVAAEPT 243
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 135 bits (343), Expect = 4e-39
Identities = 48/206 (23%), Positives = 73/206 (35%), Gaps = 14/206 (6%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIGR ++ A ++ A + D + + D+ D A A V
Sbjct: 19 GIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVEL 78
Query: 79 V----GPVDVLINNAAV-ARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G +D NNA + E D N+ + ++ +
Sbjct: 79 AVRRFGGLDTAFNNAGALGAMGEISSLSVEG-WRETLDTNLTSAFLAAKYQVPAIAALG- 136
Query: 134 QGSIVNVSSIAGKT-ALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
GS+ SS G T G Y+ASKA L + + +A+ELG IRVN++ P T
Sbjct: 137 GGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPA 196
Query: 193 GRTGW--SDPAKAGPMLAKTPLGRFA 216
+ P G + L R A
Sbjct: 197 NFANLPGAAPETRGFVEGLHALKRIA 222
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 136 bits (344), Expect = 6e-39
Identities = 60/242 (24%), Positives = 86/242 (35%), Gaps = 51/242 (21%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPN-VQTVQVDLQDWARTR--- 73
+GR I E L + S +AN +L PN TVQ DL + A
Sbjct: 57 RLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSG 116
Query: 74 ------------------AAVSKVGPVDVLINNAAVARFDRFLDIDEE------------ 103
A + G DVL+NNA+ L DE+
Sbjct: 117 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAM 176
Query: 104 -NLIDSIFDVNIKAVINISQVVSKTMIDHKIQ-----GSIVNVSSIAGKTALEGHTIYSA 157
+F N A + + + + + SI+N+ L G+TIY+
Sbjct: 177 ETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTM 236
Query: 158 SKAALDSITRTMALELGPYNIRVNSVQP-TVVMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
+K AL+ +TR+ ALEL P IRVN V P V+ G +K PL +
Sbjct: 237 AKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV----DDMPPAVWEG-HRSKVPLYQRD 291
Query: 217 GK 218
Sbjct: 292 SS 293
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 134 bits (339), Expect = 7e-39
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 13/204 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDL---QDWART-RAAVS 77
G+G +V+ L A + +A L V+ D+ DW A
Sbjct: 17 GVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQR 76
Query: 78 KVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
++G ++VL+NNA + E+ + +N ++V Q M + GSI
Sbjct: 77 RLGTLNVLVNNAGILLPGDMETGRLEDF-SRLLKINTESVFIGCQQGIAAMKETG--GSI 133
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGP--YNIRVNSVQPTVVMTQMGRT 195
+N++S++ +E + YSASKAA+ ++TR AL Y IRVNS+ P + T M +
Sbjct: 134 INMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQA 193
Query: 196 GWSD---PAKAGPMLAKTPLGRFA 216
GR
Sbjct: 194 SLPKGVSKEMVLHDPKLNRAGRAY 217
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 135 bits (341), Expect = 8e-39
Identities = 61/231 (26%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 23 GIGRCIVEKLSQHEAIIIAL----------------SKTQANLDS----LKQAFPNVQTV 62
G GR +L+Q A IIA+ + T +L +K + T
Sbjct: 22 GQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTA 81
Query: 63 QVDLQDWARTRAAVSKV----GPVDVLINNAAVARFDRFL-DIDEENLIDSIFDVNIKAV 117
+VD++D+ +AAV G +D+++ NA + L EE+ + D+N+ V
Sbjct: 82 EVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDW-TEMIDINLAGV 140
Query: 118 INISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYN 177
+ MI GSI+ SS+ G A Y A+K + + R +ELG +
Sbjct: 141 WKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHM 200
Query: 178 IRVNSVQPTVVMTQM--------------GRTGWSDPAKAGPMLAKTPLGR 214
IRVNSV PT V T M G D A M P+
Sbjct: 201 IRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPIPW 251
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 135 bits (341), Expect = 1e-38
Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 16/205 (7%)
Query: 23 GIGRCIVEKLSQHEAIII-------ALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAA 75
GIG + ++ A ++ AL + ++ L+ + V D++
Sbjct: 42 GIGLATATEFARRGARLVLSDVDQPALEQA---VNGLRGQGFDAHGVVCDVRHLDEMVRL 98
Query: 76 VSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
+ G VDV+ +NA + ++ ++ + D+++ I+ + +++
Sbjct: 99 ADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDD-WRWVIDIDLWGSIHAVEAFLPRLLEQ 157
Query: 132 KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
G I +S AG G Y +K + + T+A E+ P I V+ + P VV T+
Sbjct: 158 GTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETK 217
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRFA 216
+ A ++ TP G F
Sbjct: 218 LVSNSERIRG-ADYGMSATPEGAFG 241
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 134 bits (339), Expect = 1e-38
Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 9/200 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSL-KQAFPNVQTVQVDLQDWARTRAAVSKV-- 79
G+GR + L+ + + L + + V D+ D RA +
Sbjct: 39 GVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVE 98
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ-GS 136
G VDVL NNA ++ + D N+ +Q + M + + G
Sbjct: 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGR 158
Query: 137 IVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTG 196
I+N SI+ + Y+A+K A+ +T++ +L+ ++I + T M +
Sbjct: 159 IINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKM 218
Query: 197 WSDPAKAGPMLAKTPLGRFA 216
+ +A +
Sbjct: 219 KAGVPQA---DLSIKVEPVM 235
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 133 bits (337), Expect = 2e-38
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 14/198 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWARTRAAVSK 78
GIG I KL A ++ ++ L ++++ ++ DL A +
Sbjct: 40 GIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99
Query: 79 V----GPVDVLINNAAVARFDRFL-DIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G DVL+NNA V F L + D++ VN+KA + + + MI K
Sbjct: 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEW-DALIAVNLKAPYLLLRAFAPAMIAAK- 157
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
+G I+N+SS+AGK + Y+ASK L+ + + A EL + +RV+ V P V T+ G
Sbjct: 158 RGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFG 217
Query: 194 RTGWSDPAKAGPMLAKTP 211
AK + A P
Sbjct: 218 V---GLSAKKSALGAIEP 232
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 132 bits (335), Expect = 2e-38
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 18/202 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-------PNVQTVQVDLQDWARTRAA 75
GIG + H A ++ L +T+A+L + P + + ++ + R
Sbjct: 25 GIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84
Query: 76 VSKV----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMID 130
++V G +D L++NA++ + +E+ + VN+ A +++ + +
Sbjct: 85 AARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDF-MQVMHVNVNATFMLTRALLPLLKR 143
Query: 131 HKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALEL-GPYNIRVNSVQPTVVM 189
+ SI SS G+ Y SK A + + +T+A EL G +R NS+ P
Sbjct: 144 SE-DASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATR 202
Query: 190 TQMGRTGWSDPAKAGPMLAKTP 211
T M + D P+ P
Sbjct: 203 TGMRAQAYPDEN---PLNNPAP 221
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 132 bits (335), Expect = 2e-38
Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 23/201 (11%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
+G +V+ I++ + + + ++ + K+
Sbjct: 33 ALGAEVVKFFKSKSWNTISIDFRENPNAD--------HSFTIKDSGEEEIKSVIEKINSK 84
Query: 80 -GPVDVLINNAAVARF-DRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
VD + A + D ++ + + D+N+ + + + +K + G
Sbjct: 85 SIKVDTFVCAAGGWSGGNASSDEFLKS-VKGMIDMNLYSAFASAHIGAKLLNQG---GLF 140
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELG--PYNIRVNSVQPTVVMTQMGRT 195
V + A G Y A+KAA I + +A E G P + P + T R
Sbjct: 141 VLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRK 200
Query: 196 GWSDPAKAGPMLAKTPLGRFA 216
SD TPL A
Sbjct: 201 YMSDA----NFDDWTPLSEVA 217
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 133 bits (336), Expect = 4e-38
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 30/226 (13%)
Query: 23 GIGRCIVEKLSQHEAIIIAL---------SKTQANLDSLKQAFPNVQ-------TVQVDL 66
G GR +L+ A IIA+ A + L V+ Q D+
Sbjct: 24 GQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADV 83
Query: 67 QDWARTRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQ 122
+D AA+ G +D+++ NA +A + ++ + DVN+ V + +
Sbjct: 84 RDRESLSAALQAGLDELGRLDIVVANAGIAP----MSAGDDGW-HDVIDVNLTGVYHTIK 138
Query: 123 VVSKTMIDHKIQGSIVNVSSIAGKTALE----GHTIYSASKAALDSITRTMALELGPYNI 178
V T++ GSIV +SS AG + G Y A+K + + R A L I
Sbjct: 139 VAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMI 198
Query: 179 RVNSVQPTVVMTQMGRTGWSDPAKAGPMLAKTPLGRFAGKLKPKPW 224
RVNS+ P+ V T M ++ A A G G P
Sbjct: 199 RVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAM-GNAMPVEV 243
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 132 bits (334), Expect = 4e-38
Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 13/203 (6%)
Query: 22 PGIGRCIVEKLSQHEAIIIALSKTQANLDSL----KQAFPNVQTVQVDLQDWARTRAAVS 77
IG I +K + + A + L L + A + +D ++ A ++
Sbjct: 17 DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLN 76
Query: 78 KV---GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
P++V I N L+ + ++++ A + ++ M+ H Q
Sbjct: 77 AADAHAPLEVTIFNVGANVNFPILETTDRVF-RKVWEMACWAGFVSGRESARLMLAHG-Q 134
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRV-NSVQPTVVMTQMG 193
G I + A G ++++K L ++ ++MA EL P NI V + + + V T
Sbjct: 135 GKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWV 194
Query: 194 RTGWSDPAKAGPMLAKTPLGRFA 216
R + A
Sbjct: 195 R---ERREQMFGKDALANPDLLM 214
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 132 bits (335), Expect = 4e-38
Identities = 46/213 (21%), Positives = 94/213 (44%), Gaps = 21/213 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDS----LKQAFPN--VQTVQVDLQDWARTRAAV 76
GIG+ I L A ++ + + N++ ++ +P+ +Q V DL + +
Sbjct: 21 GIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVI 80
Query: 77 SKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGS 136
K VD+LINN + + DI +E+ +F+VNI + + +++ K MI+ K +G
Sbjct: 81 EKYPKVDILINNLGIFEPVEYFDIPDEDW-FKLFEVNIMSGVRLTRSYLKKMIERK-EGR 138
Query: 137 IVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM---- 192
++ ++S A + YSA+K S++R++A N+ VN++ P +T+
Sbjct: 139 VIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETM 198
Query: 193 -----GRTGWSDPAKAGPMLAK----TPLGRFA 216
+ + + + + R
Sbjct: 199 LNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLI 231
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 132 bits (335), Expect = 6e-38
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 17/208 (8%)
Query: 23 GIGRCIVEKLSQHEA-IIIA---LSKTQANLDSLKQAFPNVQTVQVDL---QDWART-RA 74
GIG + ++ A ++IA Q +++ + V D+ +D
Sbjct: 27 GIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDT 85
Query: 75 AVSKVGPVDVLINNAAVARF--DRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
++K G +D++ N V L+ E+ + D+N+ +++ ++ MI K
Sbjct: 86 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDF-KRVMDINVYGAFLVAKHAARVMIPAK 144
Query: 133 IQGSIVNVSSIAGKTALEGHTI-YSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
+GSIV +SI+ TA EG + Y+A+K A+ +T ++ ELG Y IRVN V P +V +
Sbjct: 145 -KGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASP 203
Query: 192 MGRTGWSDPAKAGPMLAK---TPLGRFA 216
+ + + LA G
Sbjct: 204 LLTDVFGVDSSRVEELAHQAANLKGTLL 231
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 131 bits (333), Expect = 7e-38
Identities = 58/203 (28%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSL-----KQAFPNVQTVQVDLQDWARTRAAVS 77
GIGR I ++ A + ++ A++D+ + V VQ D+ D A+ A
Sbjct: 21 GIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAG 80
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +DV+ NA V + E L + IF VN+ Q +I
Sbjct: 81 RAVEEFGGIDVVCANAGVFPDAPLATMTPEQL-NGIFAVNVNGTFYAVQACLDALIASG- 138
Query: 134 QGSIVNVSSIAGK-TALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G +V SSI G T G + Y A+KAA RT A+EL P+ I VN++ P +MT+
Sbjct: 139 SGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEG 198
Query: 193 GRTGWSDPAKAGPMLAKTPLGRF 215
+ A M P G
Sbjct: 199 LL-ENGEEYIAS-MARSIPAGAL 219
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 132 bits (334), Expect = 7e-38
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 18/216 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDS----LKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIGR L+ + AL +T+ ++ + A ++ D+ D + R AV
Sbjct: 39 GIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRD 98
Query: 79 V----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +D+++ NA + + D+ D VN++ + +
Sbjct: 99 LVLKFGHLDIVVANAGINGVWAPIDDLKPFE-WDETIAVNLRGTFLTLHLTVPYLKQRG- 156
Query: 134 QGSIVNVSSIAGKT--ALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
G+IV VSSI G G T Y+A+KAA +I + +ALELG ++IRVN+V P + T
Sbjct: 157 GGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETN 216
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRFAGKLKPKPWNRW 227
+ + + + P G+ P +
Sbjct: 217 ISDNTKLRHEEETAIPVEWPKGQ-----VPITDGQP 247
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 131 bits (333), Expect = 8e-38
Identities = 40/212 (18%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP------NVQTVQVDLQDWARTRAAV 76
G+G +L+++ A ++ S+ + L++ V V D+++
Sbjct: 18 GLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLF 77
Query: 77 SKV---GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
K G D+L+ + R RF+++ E+ D + + ++ + + + ++ M++
Sbjct: 78 EKARDLGGADILVYSTGGPRPGRFMELGVEDW-DESYRLLARSAVWVGRRAAEQMVEKG- 135
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM- 192
G +V + S+ + + + + + + RT+ALEL P+ + VN+V P++++T
Sbjct: 136 WGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRV 195
Query: 193 --------GRTGWSDPAKAGPMLAKTPLGRFA 216
R+G + M ++ P+GR
Sbjct: 196 RSLAEERARRSGITVEEALKSMASRIPMGRVG 227
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 131 bits (332), Expect = 1e-37
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 8/172 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG I + S+ ++ L++ L +L N QVD+ D A+++
Sbjct: 27 GIGEAIARRFSEEGHPLLLLARRVERLKALNLP--NTLCAQVDVTDKYTFDTAITRAEKI 84
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
GP D ++NNA + + + +FDVN+ ++N Q V M G+I+
Sbjct: 85 YGPADAIVNNAGMMLLGQIDTQEANE-WQRMFDVNVLGLLNGMQAVLAPMKARN-CGTII 142
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
N+SSIAGK H Y +K A+ +I+ + E+ N+RV ++ P+ V T
Sbjct: 143 NISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKT 194
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 128 bits (325), Expect = 3e-37
Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 14/189 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
G+G L H+ ++ + L L + + + DL D +A + + GP+
Sbjct: 11 GLGGAFARALKGHDLLLSG--RRAGALAELAREVG-ARALPADLADELEAKALLEEAGPL 67
Query: 83 DVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSS 142
D+L++ A + + L++ + ++ V K K V +
Sbjct: 68 DLLVHAVGKAGRASVREAGRD-LVEEMLAAHLLTAAF----VLKHARFQK-GARAVFFGA 121
Query: 143 IAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSDPAK 202
+ G Y+A+K AL++ EL + + V+ V TG P
Sbjct: 122 YPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAV-----ATGLWAPLG 176
Query: 203 AGPMLAKTP 211
P A +P
Sbjct: 177 GPPKGALSP 185
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 130 bits (329), Expect = 3e-37
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 12/198 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
GIGR ++ ++ A ++A+ + + L A V D+ D A ++
Sbjct: 17 GIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE 76
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G + + + A VA ++ E + + VN+ +++ + + + GS+
Sbjct: 77 EFGRLHGVAHFAGVAHSALSWNLPLEAW-EKVLRVNLTGSFLVARKAGEVL---EEGGSL 132
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
V S+AG A G Y+A K + + RT+ALEL +RVN + P ++ T M T
Sbjct: 133 VLTGSVAGLGAF-GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPM--TAG 189
Query: 198 SDPAKAGPMLAKTPLGRF 215
P + +PLGR
Sbjct: 190 LPPWAWEQEVGASPLGRA 207
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 131 bits (331), Expect = 5e-37
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 18/198 (9%)
Query: 23 GIGRCIVEKLSQHEAIII-------ALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAA 75
G+G +V +L + ++ K A L + + P V VQ+D+ + A
Sbjct: 19 GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL-EAEGSGPEVMGVQLDVASREGFKMA 77
Query: 76 VSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
+V GPV +L NNA V F + ++ D + VN+ V+N M++
Sbjct: 78 ADEVEARFGPVSILCNNAGVNLFQPIEESSYDD-WDWLLGVNLHGVVNGVTTFVPRMVER 136
Query: 132 KIQ-----GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPT 186
G +VN +S+A A IY+ +K A+ ++ ++ L Y I V+ + P
Sbjct: 137 VKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPG 196
Query: 187 VVMTQMGRTGWSDPAKAG 204
+V + + + P
Sbjct: 197 LVKSYIYASDDIRPDALK 214
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 128 bits (325), Expect = 7e-37
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 10/193 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
GIGR + + LSQ A + ++ + L + V DL+ KV V
Sbjct: 30 GIGRAVADVLSQEGAEVTICARNEELLKRSGHRY-----VVCDLRKDLD--LLFEKVKEV 82
Query: 83 DVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSS 142
D+L+ NA + F ++ E+ D +I I + M + G IV ++S
Sbjct: 83 DILVLNAGGPKAGFFDELTNED-FKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS 140
Query: 143 IAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSDPAK 202
+ + +E ++++ AL +T++ E+ PY I VN V P T+ + S+ K
Sbjct: 141 FSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKK 200
Query: 203 AGPMLAKTPLGRF 215
+ ++ P+ R
Sbjct: 201 KQ-VESQIPMRRM 212
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 129 bits (326), Expect = 7e-37
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-----------PNVQTVQVDLQDWAR 71
GIGR + +L+ A + A +A + N Q D+ +
Sbjct: 18 GIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARA 77
Query: 72 TRAAVSKV-----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSK 126
R + +V P V+++ A + + + L + E++ D + VN+K ++Q ++
Sbjct: 78 ARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDW-DKVIAVNLKGTFLVTQAAAQ 136
Query: 127 TMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPT 186
++ + +GSI+N+SSI GK G T Y+ASKA + +T+T A ELG + IR NSV P
Sbjct: 137 ALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPG 196
Query: 187 VVMTQMGRTGWSDPAKAGPMLAKTPLGRF 215
+ T M + + P+G
Sbjct: 197 FIATPMTQK-VPQKVVDK-ITEMIPMGHL 223
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 128 bits (325), Expect = 8e-37
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 17/209 (8%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV- 79
GIG I + L++ A ++ L + + DL D A+ A +
Sbjct: 15 GIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAE 74
Query: 80 ---GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGS 136
G VD+L+NNA + E+ D I +N+ AV + +++ M G
Sbjct: 75 REFGGVDILVNNAGIQHVAPVEQFPLESW-DKIIALNLSAVFHGTRLALPGMRARN-WGR 132
Query: 137 IVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM---- 192
I+N++S+ G G Y A+K + +T+ + LE N+ N++ P V+T +
Sbjct: 133 IINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQ 192
Query: 193 -----GRTGWSDPAKAGPMLAKTPLGRFA 216
G A+ + K P F
Sbjct: 193 IDDRAANGGDPLQAQHDLLAEKQPSLAFV 221
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 129 bits (326), Expect = 9e-37
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDS----LKQAFPNVQTVQVDLQDWARTRAAVSK 78
GIGR + ++ ++ ++ + L+ K V T VD + ++ K
Sbjct: 42 GIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKK 101
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
V G V +L+NNA V + I+ F+VN+ A ++ M +
Sbjct: 102 VKAEIGDVSILVNNAGVVYTSDLFATQDP-QIEKTFEVNVLAHFWTTKAFLPAMTKNN-H 159
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPY---NIRVNSVQPTVVMTQ 191
G IV V+S AG ++ Y +SK A +T+ EL ++ + P V T
Sbjct: 160 GHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTG 219
Query: 192 M 192
Sbjct: 220 F 220
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 129 bits (326), Expect = 1e-36
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 16/207 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVSK 78
GIG I ++ A I+ Q +D A+ N D+ D +A V++
Sbjct: 45 GIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCDVTDEDGIQAMVAQ 104
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
+ G +D+L+NNA + R +++ + D+++ A +S+ V +MI
Sbjct: 105 IESEVGIIDILVNNAGIIRRVPMIEMTAAQF-RQVIDIDLNAPFIVSKAVIPSMIKKG-H 162
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G I+N+ S+ + E + Y+A+K L +T+ +A E G NI+ N + P + T
Sbjct: 163 GKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTA 222
Query: 195 TGWSDPAKAGP------MLAKTPLGRF 215
++AKTP R+
Sbjct: 223 PLRELQKDGSRHPFDQFIIAKTPAARW 249
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 128 bits (325), Expect = 2e-36
Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 26/210 (12%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQ-----------TVQVDLQDWAR 71
GIG I ++++ A + ++K+ L + D++D
Sbjct: 20 GIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDA 79
Query: 72 TRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKT 127
AAV+K G +D+ +NNA+ ++ + D + + ++ +SQ
Sbjct: 80 VAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKR-FDLMNGIQVRGTYAVSQSCIPH 138
Query: 128 MIDHKIQGSIVNVSSIAGKTA-LEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPT 186
M I+ +S T Y +K + +A EL I N++ P
Sbjct: 139 MKGRD-NPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWP- 196
Query: 187 VVMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
RT + A + + R
Sbjct: 197 -------RTTVATAAVQNLLGGDEAMARSR 219
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 128 bits (324), Expect = 2e-36
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 15/205 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVSK 78
GIG + E +Q A + + + + + + + ++ D +S+
Sbjct: 45 GIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQ 104
Query: 79 V----GPVDVLINNAAVA-RFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G +DV + NA V +D+D + + I V++ V S + K +
Sbjct: 105 QEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG- 163
Query: 134 QGSIVNVSSIAGKTALEGH--TIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
+GS++ SSI+GK Y+ +KAA + +++A+E P+ RVN++ P + T
Sbjct: 164 KGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPF-ARVNTISPGYIDTD 222
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRFA 216
+ D TPLGR
Sbjct: 223 ITDFASKDMKAK--WWQLTPLGREG 245
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 128 bits (324), Expect = 3e-36
Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVSK 78
GIG + L+ + ++ N+ + +V D+ AAV+
Sbjct: 35 GIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAA 94
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKT--MIDHK 132
GP+ +L+N+A D+D+ L + D N+ V +++ V + M +
Sbjct: 95 AVERFGPIGILVNSAGRNGGGETADLDDA-LWADVLDTNLTGVFRVTREVLRAGGMREAG 153
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G IVN++S GK + Y+ASK + T+++ EL I VN+V P V T M
Sbjct: 154 -WGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPM 212
Query: 193 GRTGWSDPAKAGP---------MLAKTPLGRF 215
A+ AK PLGR+
Sbjct: 213 AERVREGYARHWGVTEQEVHERFNAKIPLGRY 244
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 126 bits (320), Expect = 5e-36
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVSK 78
GIG L+ A + ++ L +L V +++D+ D AAV+
Sbjct: 18 GIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVAS 77
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G +D+L+NNA + D D + + D N+ ++ +++ ++ K
Sbjct: 78 TVEALGGLDILVNNAGIMLLGPVEDADTTD-WTRMIDTNLLGLMYMTRAALPHLLRSK-- 134
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
G++V +SSIAG+ + +Y A+K +++ + T+ E+ +RV ++P T
Sbjct: 135 GTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDT 190
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 127 bits (321), Expect = 5e-36
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 21/212 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWARTRAAVSK 78
GIG I +L + + ++ + L + + D++ A V+
Sbjct: 33 GIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAA 92
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKT--MIDHK 132
V GPVDVL+NNA ++ +E L + + N+ V +++ V K M++
Sbjct: 93 VVERYGPVDVLVNNAGRPGGGATAELADE-LWLDVVETNLTGVFRVTKQVLKAGGMLERG 151
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVV---M 189
G IVN++S GK + YSASK + T+ + LEL I VN+V P V M
Sbjct: 152 -TGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM 210
Query: 190 TQMGRTGWSDPAKAGP------MLAKTPLGRF 215
R +SD + + A+ P+GR+
Sbjct: 211 AASVREHYSDIWEVSTEEAFDRITARVPIGRY 242
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 126 bits (319), Expect = 6e-36
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 5/194 (2%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKVGP 81
GIG I L + + +I + L SL A N +L + +SK
Sbjct: 25 GIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSN 84
Query: 82 VDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVS 141
+D+L+ NA + + + +++ D + D+N+KA +++ K MI + G I+N+S
Sbjct: 85 LDILVCNAGITSDTLAIRMKDQD-FDKVIDINLKANFILNREAIKKMIQKR-YGRIINIS 142
Query: 142 SIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWSDPA 201
SI G G Y ASKA L +T++++ E+ I VN+V P + + M ++
Sbjct: 143 SIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTD-KLNEKQ 201
Query: 202 KAGPMLAKTPLGRF 215
+ ++ K PLG +
Sbjct: 202 REA-IVQKIPLGTY 214
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 126 bits (319), Expect = 8e-36
Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 19/210 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN----VQTVQVDLQDWARTRAAVSK 78
GIGR I +L + A + + L + Q + V D + R+ +
Sbjct: 16 GIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQ 75
Query: 79 V-----GPVDVLINNAAVA-------RFDRFLDIDEENLIDSIFDVNIKAVINISQVVSK 126
V G +DVL+NNA R F + D I +V ++ S ++
Sbjct: 76 VDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMW-DDINNVGLRGHYFCSVYGAR 134
Query: 127 TMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPT 186
M+ QG IV +SS + + Y KAA D + A EL + + S+ P
Sbjct: 135 LMVPAG-QGLIVVISSPGSLQYM-FNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPG 192
Query: 187 VVMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
+V T++ + + + K F+
Sbjct: 193 IVQTELLKEHMAKEEVLQDPVLKQFKSAFS 222
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 125 bits (317), Expect = 8e-36
Identities = 38/195 (19%), Positives = 77/195 (39%), Gaps = 14/195 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-----NVQTVQVDLQDWARTRAAVS 77
GIG I L++ + +++ L+ + V +D+
Sbjct: 13 GIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
KV G VDV++ NA + F R ++ EE + +VN+ V + ++
Sbjct: 73 KVLERFGDVDVVVANAGLGYFKRLEELSEEE-FHEMIEVNLLGVWRTLKAFLDSLKRTG- 130
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
++V S ++ + + Y ++K A ++ RT +E ++R ++P V T G
Sbjct: 131 GLALVTTSDVSAR-LIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFELRPGAVDTYFG 187
Query: 194 RTGWSDPAKAGPMLA 208
+ P + G +
Sbjct: 188 GSKPGKPKEKGYLKP 202
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 126 bits (320), Expect = 8e-36
Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 31/211 (14%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQ-----------TVQVDLQDWAR 71
GIG I + ++ A + +K+ L + ++ D+++ +
Sbjct: 17 GIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQ 76
Query: 72 TRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKT 127
RAAV+ G +D+L+NNA+ LD + D + VN + +Q
Sbjct: 77 VRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKR-FDLMQQVNARGSFVCAQACLPH 135
Query: 128 MIDHKIQGSIVNVSSIAGKTA--LEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
++ I+ ++ HT Y+ +K + +T +A E GP + +N++ P
Sbjct: 136 LLQAP-NPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWP 194
Query: 186 -TVVMTQMGRTGWSDPAKAGPMLAKTPLGRF 215
TV+ T ML
Sbjct: 195 RTVIATDAIN-----------MLPGVDAAAC 214
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 126 bits (320), Expect = 1e-35
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSL-----KQAFPNVQTVQVDLQDWARTRAAVS 77
GIGR I ++ A + +++ L S+ + NV V++D+ D A
Sbjct: 52 GIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAAR 111
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G +DV+ NA + R + E + + DVN+K + Q +
Sbjct: 112 TVVDAFGALDVVCANAGIFPEARLDTMTPEQ-LSEVLDVNVKGTVYTVQACLAPLTASG- 169
Query: 134 QGSIVNVSSIAGK-TALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
+G ++ SSI G T G + Y ASKAA RT A+EL P + VN++ P ++T+
Sbjct: 170 RGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEG 229
Query: 193 GRTGWSDPAKAGPMLAKTPLGRF 215
+ +G M P+G
Sbjct: 230 LV-DMGEEYISG-MARSIPMGML 250
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 126 bits (320), Expect = 1e-35
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 22/214 (10%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAF-----PNVQTVQVDLQDWARTRAAV 76
GIG I L++ A I++ + ++ V D+ + +
Sbjct: 36 GIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMM 95
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
+ V G D+L+NNA V ++ D E D I VN+ + + + M
Sbjct: 96 AMVADRFGGADILVNNAGVQFVEKIEDFPVEQW-DRIIAVNLSSSFHTIRGAIPPMKKKG 154
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G I+N++S G A + Y A+K + +T+T+ALE+ + VNS+ P V+T +
Sbjct: 155 -WGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPL 213
Query: 193 GRTGWSDPAKAGP----------MLAKTPLGRFA 216
D A+ ML P +F
Sbjct: 214 VEKQIPDQARTRGITEEQVINEVMLKGQPTKKFI 247
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 125 bits (317), Expect = 1e-35
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKV-- 79
G G CI + Q +IA + Q L LK N+ Q+D+++ A ++ +
Sbjct: 11 GFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA 70
Query: 80 --GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGS 136
+D+L+NNA +A + E+ +++ D N K ++ +++ V M++ G
Sbjct: 71 EWCNIDILVNNAGLALGMEPAHKASVED-WETMIDTNNKGLVYMTRAVLPGMVERN-HGH 128
Query: 137 IVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
I+N+ S AG G +Y A+KA + + + +L +RV ++P +V
Sbjct: 129 IINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGG 182
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 125 bits (317), Expect = 2e-35
Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 17/206 (8%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKT---QANLDSLKQAFP-NVQTVQVDLQDWARTRAAV 76
G+G ++ A I S+ + N+ L++ + + + + + V
Sbjct: 33 GMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLV 92
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
V G +D I NA LD E + + V++ + ++ V +
Sbjct: 93 KDVVADFGQIDAFIANAGATADSGILDGSVEA-WNHVVQVDLNGTFHCAKAVGHHFKERG 151
Query: 133 IQGSIVNVSSIAGKTA--LEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
GS+V +S++G A + T Y+ +KA + R++A E + RVNS+ P + T
Sbjct: 152 -TGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF-ARVNSISPGYIDT 209
Query: 191 QMGRTGWSDPAKAGPMLAKTPLGRFA 216
+ + + + P+GR
Sbjct: 210 GL--SDFVPKETQQLWHSMIPMGRDG 233
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 126 bits (318), Expect = 2e-35
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 14/195 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-----PNVQTVQVDLQDWARTRAAVS 77
GIGR + L++ A ++ ++++ L + + + ++D V+
Sbjct: 39 GIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 98
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +D+LI N D ++ +VN + + ++ M+
Sbjct: 99 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHV-RKSMEVNFLSYVVLTVAALP-MLKQS- 155
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGP--YNIRVNSVQPTVVMTQ 191
GSIV VSS+AGK A YSASK ALD ++ E N+ + ++ T+
Sbjct: 156 NGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE 215
Query: 192 MGRTGWSDPAKAGPM 206
S
Sbjct: 216 TAMKAVSGIVHMQAA 230
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 125 bits (316), Expect = 3e-35
Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQ---AFPNVQTVQVDLQDWARTRAAVSKV 79
G G + ++ ++ + + L +L A V + +D++D A AAV +
Sbjct: 32 GFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNL 91
Query: 80 ----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
+ LINNA +A D D ++ D++ D NIK ++ ++++ +I H
Sbjct: 92 PEEFATLRGLINNAGLALGTDPAQSCDLDD-WDTMVDTNIKGLLYSTRLLLPRLIAHGAG 150
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
SIVN+ S+AGK G +Y +KA ++ + + +L +RV +++P + +
Sbjct: 151 ASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCES 206
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 125 bits (316), Expect = 5e-35
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 61 TVQVDLQDWARTRAAVSKV----GPVDVLINNAAV-ARFDRFLDIDEENLIDSIFDVNIK 115
+ DL D + R+ V K G +D+L A D+ E F VN+
Sbjct: 104 LLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQF-QQTFAVNVF 162
Query: 116 AVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGP 175
A+ I+Q + SI+ SSI Y+A+KAA+ + +R +A ++
Sbjct: 163 ALFWITQEAIPLL---PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAE 219
Query: 176 YNIRVNSVQPTVVMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
IRVN V P + T + +G K +TP+ R
Sbjct: 220 KGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAG 260
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 125 bits (315), Expect = 5e-35
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP------NVQTVQVDLQDWARTRAAV 76
GIG + L Q ++ ++T N++ L + + DL + +
Sbjct: 43 GIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 102
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
S + VD+ INNA +AR D L +F+VN+ A+ ++ ++M +
Sbjct: 103 SAIRSQHSGVDICINNAGLARPDTLLSGSTSG-WKDMFNVNVLALSICTREAYQSMKERN 161
Query: 133 IQ-GSIVNVSSIAGKTALE--GHTIYSASKAALDSITRTMALELGP--YNIRVNSVQPTV 187
+ G I+N++S++G L YSA+K A+ ++T + EL +IR + P V
Sbjct: 162 VDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGV 221
Query: 188 VMTQMGRTGWS-DPAKAGPMLAKTP 211
V TQ DP KA +
Sbjct: 222 VETQFAFKLHDKDPEKAAATYEQMK 246
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 124 bits (313), Expect = 6e-35
Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 25/206 (12%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQA-------FPNVQTVQVDLQDWARTRAA 75
GIGR +++ A +I L + + L + P + + +
Sbjct: 23 GIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQL 82
Query: 76 VSKV----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMID 130
++ +D +++NA + + + + + VN+ A ++Q + ++
Sbjct: 83 AQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVW-QDVMQVNVNATFMLTQALLPLLLK 141
Query: 131 HKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMT 190
GS+V SS G+ Y+ASK A + + + +A E +RVN + P T
Sbjct: 142 SD-AGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ-RLRVNCINPGGTRT 199
Query: 191 QMGRTGWSDPAKAGPMLAKTPLGRFA 216
M + +
Sbjct: 200 AMRAS----------AFPTEDPQKLK 215
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 123 bits (311), Expect = 7e-35
Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 7/180 (3%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
+G V+ + ++ + S + + V
Sbjct: 18 ALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKV 77
Query: 83 DVLINNAAV-ARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVS 141
D ++ A A + +N D ++ +I S + +K + + G +
Sbjct: 78 DAILCVAGGWAGGNAKSKSLFKNC-DLMWKQSIWTSTISSHLATKHLKEG---GLLTLAG 133
Query: 142 SIAGKTALEGHTIYSASKAALDSITRTMALELG--PYNIRVNSVQPTVVMTQMGRTGWSD 199
+ A G Y +K A+ + +++A + P +V P + T M R +
Sbjct: 134 AKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPE 193
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 123 bits (312), Expect = 7e-35
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIGR +E ++ A ++A + L +A V +D+ D A ++
Sbjct: 16 GIGRATLELFAKEGARLVACDIEEGPLREAAEAV-GAHPVVMDVADPASVERGFAEALAH 74
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
G +D +++ A + R + + E+ + + VN+ +++ S+ M + GSIV
Sbjct: 75 LGRLDGVVHYAGITRDNFHWKMPLEDW-ELVLRVNLTGSFLVAKAASEAMREKN-PGSIV 132
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
+S G Y+AS A + +TRT+ALELG + IRVN++ P + T+M
Sbjct: 133 LTASRVY-LGNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK-VP 190
Query: 199 DPAKAGPMLAKTPLGRF 215
+ + +A TPLGR
Sbjct: 191 EKVREK-AIAATPLGRA 206
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 123 bits (312), Expect = 8e-35
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 9/198 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
GIG+ I E L++ A +I + +++ ++ N + + +++ + A + +
Sbjct: 20 GIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITD 79
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G VD+L+NNA + R + + + EE I + N+ ++ +S+ V + M+ + QG I
Sbjct: 80 EFGGVDILVNNAGITRDNLLMRMKEEE-WSDIMETNLTSIFRLSKAVLRGMMKKR-QGRI 137
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
+NV S+ G G Y+A+KA + T++MA E+ + VN+V P + T M +
Sbjct: 138 INVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTK-AL 196
Query: 198 SDPAKAGPMLAKTPLGRF 215
+D + LA+ P GR
Sbjct: 197 NDEQRTA-TLAQVPAGRL 213
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 123 bits (311), Expect = 1e-34
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 9/198 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
GIG I AI+ + L + +V +L D +
Sbjct: 38 GIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAER 97
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
+D+L+NNA + R F+ + +++ D + VN+ A +++ + +M+ + G I
Sbjct: 98 EMEGIDILVNNAGITRDGLFVRMQDQD-WDDVLAVNLTAASTLTRELIHSMMRRR-YGRI 155
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
+N++SI G G T Y A+KA L ++ +A E+ NI VN + P + + M
Sbjct: 156 INITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTD-KL 214
Query: 198 SDPAKAGPMLAKTPLGRF 215
++ K ++A P+ R
Sbjct: 215 NEKQKEA-IMAMIPMKRM 231
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 123 bits (311), Expect = 2e-34
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 12/201 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVSK 78
GIGR I + L++ + +I +S+TQ + DS+ D+ ++K
Sbjct: 55 GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINK 114
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
+ VD+L+NNA + R + FL + + + + N+ ++ I+Q +SK MI+++
Sbjct: 115 ILTEHKNVDILVNNAGITRDNLFLRMKNDE-WEDVLRTNLNSLFYITQPISKRMINNR-Y 172
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G I+N+SSI G T G YS+SKA + T+++A EL NI VN++ P + + M
Sbjct: 173 GRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD 232
Query: 195 TGWSDPAKAGPMLAKTPLGRF 215
S+ K +++ P GR
Sbjct: 233 -KISEQIKKN-IISNIPAGRM 251
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 122 bits (309), Expect = 3e-34
Identities = 50/213 (23%), Positives = 79/213 (37%), Gaps = 22/213 (10%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAF-----PNVQTVQVDLQDWARTRAAV 76
GIG I L+ A I++ A ++ ++ V DL R V
Sbjct: 15 GIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLV 74
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
G +D+L+NNA + D E D+I +N+ AV + + M
Sbjct: 75 DNAVRQMGRIDILVNNAGIQHTALIEDFPTEKW-DAILALNLSAVFHGTAAALPHMKKQG 133
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G I+N++S G A + Y A+K + T+ ALE I N++ P V T +
Sbjct: 134 -FGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPL 192
Query: 193 GRTGWSDPAKAGP----------MLAKTPLGRF 215
S A+ + K P +F
Sbjct: 193 VEKQISALAEKNGVDQETAARELLSEKQPSLQF 225
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 122 bits (308), Expect = 4e-34
Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 12/201 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVSK 78
GIGR I +L++ A++I + T+A + + AF + +++ D A V
Sbjct: 39 GIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVES 98
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G ++VL+NNA + + + + ++ D++ D N+KAV +S+ V + M+ +
Sbjct: 99 TLKEFGALNVLVNNAGITQDQLAMRMKDDE-WDAVIDTNLKAVFRLSRAVLRPMMKAR-G 156
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G IVN++S+ G G Y+A+KA + +TR +A E+G I VN V P + T M +
Sbjct: 157 GRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTK 216
Query: 195 TGWSDPAKAGPMLAKTPLGRF 215
G + + + PLGR
Sbjct: 217 -GLPQEQQTA-LKTQIPLGRL 235
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 121 bits (307), Expect = 4e-34
Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIG I ++L + ++ + + L+ K + + ++ DW T+ A
Sbjct: 24 GIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFD 83
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
KV G +DVL+NNA + R F + E+ ++ D N+ ++ N+++ V M++
Sbjct: 84 KVKAEVGEIDVLVNNAGITRDVVFRKMTRED-WQAVIDTNLTSLFNVTKQVIDGMVERG- 141
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G I+N+SS+ G+ G T YS +KA + T ++A E+ + VN+V P + T M
Sbjct: 142 WGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMV 201
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
+ ++A P+ R
Sbjct: 202 K-AIRPDVLEK-IVATIPVRRL 221
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 121 bits (307), Expect = 5e-34
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 15/200 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQ----AFPNVQTVQVDLQDWARTRAAVSK 78
GIG I +L A I+ ++ QA ++++ A +D+ D A
Sbjct: 15 GIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQA 74
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G +DVL+NNA V + + + + DVNIK V+ V M +
Sbjct: 75 AVDTWGRIDVLVNNAGVMPLSPLAAVKVDE-WERMIDVNIKGVLWGIGAVLPIMEAQR-S 132
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG- 193
G I+N+ SI + + +Y A+K A+ +I+ + E NIRV V P VV +++
Sbjct: 133 GQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--STNIRVTCVNPGVVESELAG 190
Query: 194 -RTGWSDPAKAGPMLAKTPL 212
T + A L
Sbjct: 191 TITH-EETMAAMDTYRAIAL 209
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 121 bits (306), Expect = 6e-34
Identities = 44/201 (21%), Positives = 97/201 (48%), Gaps = 12/201 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF----PNVQTVQVDLQDWARTRAAVSK 78
GIG + L+ A ++ + +QA+ + + + + + +++ D + ++
Sbjct: 16 GIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAE 75
Query: 79 V----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
+ +D+L+NNA + R + + + E+ S+ + N+ ++ +S+ + M+ +
Sbjct: 76 IKAENLAIDILVNNAGITRDNLMMRMSEDE-WQSVINTNLSSIFRMSKECVRGMMKKR-W 133
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGR 194
G I+++ S+ G G T Y A+KA + ++++A E+ NI VN V P + T M
Sbjct: 134 GRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTD 193
Query: 195 TGWSDPAKAGPMLAKTPLGRF 215
+D K+ + K P G+
Sbjct: 194 -KLTDEQKSF-IATKIPSGQI 212
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 121 bits (306), Expect = 9e-34
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 12/202 (5%)
Query: 23 GIGRCIVEKLSQHEAIIIA-----LSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
G+G I +L + L + A + + VD+ D+
Sbjct: 36 GLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAE 95
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
KV G VDVLINNA + R F+ + + + D++ ++ A+ N+++ M++ +
Sbjct: 96 KVLADFGKVDVLINNAGITRDATFMKMTKGDW-DAVMRTDLDAMFNVTKQFIAGMVERR- 153
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G IVN+ S+ G G Y+++KA + T+T+ALE I VN+V P + T M
Sbjct: 154 FGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMV 213
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
+L + P+GR
Sbjct: 214 E-AVPQDVLEAKILPQIPVGRL 234
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 120 bits (303), Expect = 2e-33
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
G+G+ I KL A I+ + + T + + K A NV + D+++ V
Sbjct: 16 GLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVK 75
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G +D+L+NNA + R L + E++ D + + N+K+ ++ VSK M+ K
Sbjct: 76 TAMDAFGRIDILVNNAGITRDTLMLKMSEKD-WDDVLNTNLKSAYLCTKAVSKIMLKQK- 133
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G I+N++SIAG G Y+ASKA L T+++A E I N+V P ++ T M
Sbjct: 134 SGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMT 193
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
D K L PL RF
Sbjct: 194 D-VLPDKVKEM-YLNNIPLKRF 213
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 120 bits (302), Expect = 2e-33
Identities = 42/228 (18%), Positives = 69/228 (30%), Gaps = 56/228 (24%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG + L I+ + A V DL + A++ V
Sbjct: 12 GIGAATRKVLEAAGHQIVGIDIRDA-------------EVIADLSTAEGRKQAIADVLAK 58
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
+D L+ A + + L ++ VN + + Q +
Sbjct: 59 CSKGMDGLVLCAGLGPQTKVLG--------NVVSVNYFGATELMDAFLPALKKGH-QPAA 109
Query: 138 VNVSSIAGKTALE----------------------------GHTIYSASKAALDSITRTM 169
V +SS+A G+ Y+ SK AL R
Sbjct: 110 VVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKR 169
Query: 170 ALELGPYNIRVNSVQPTVVMTQMGRTGWSDPAKAGPMLAK-TPLGRFA 216
A G +R+N++ P T + + G DP + P+GR A
Sbjct: 170 AAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRA 217
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 119 bits (300), Expect = 3e-33
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 13/202 (6%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVS 77
GIGR I +L++ + + + ++ +++ + + +Q ++ D +A +
Sbjct: 15 GIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIK 74
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+V G +DVL+NNA + R + + + E+ D + D N+K V N Q + M+ +
Sbjct: 75 EVVSQFGSLDVLVNNAGITRDNLLMRMKEQE-WDDVIDTNLKGVFNCIQKATPQMLRQR- 132
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G+I+N+SS+ G G Y A+KA + +T++ A EL I VN+V P +++ M
Sbjct: 133 SGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMT 192
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
SD K ML + PL RF
Sbjct: 193 D-ALSDELKEQ-MLTQIPLARF 212
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 119 bits (302), Expect = 3e-33
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 17/206 (8%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
G+G+ + EKL + T ++ K +Q VQ D+ V
Sbjct: 18 GLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVE 77
Query: 78 KV----GPVDVLINNA--AVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH 131
+ G +D LINNA V + +D +E+ + + N+ AV ++ ++V M
Sbjct: 78 EAMSHFGKIDFLINNAGPYVFERKKLVDYEEDE-WNEMIQGNLTAVFHLLKLVVPVMRKQ 136
Query: 132 KIQGSIVNVS--SIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVM 189
G I+N + ++A+K L S+T+T+A E Y I N V P ++
Sbjct: 137 N-FGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDII 195
Query: 190 TQMGRTGWSDPAKAGPMLAKTPLGRF 215
+M + TP+GR
Sbjct: 196 GEM--KEATIQEARQLKEHNTPIGRS 219
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 119 bits (300), Expect = 4e-33
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 13/202 (6%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVS 77
GIGR I L++ A +++ + + + + + V+ D+ + V
Sbjct: 15 GIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVK 74
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G VD+L+NNA V + + + + EE D++ + N+K V ++ VS+ M+ +
Sbjct: 75 QTVDVFGQVDILVNNAGVTKDNLLMRMKEEE-WDTVINTNLKGVFLCTKAVSRFMMRQR- 132
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G IVN++S+ G T G Y A+KA + +T+T A EL NI VN++ P + T M
Sbjct: 133 HGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMT 192
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
+ KA ML P +F
Sbjct: 193 D-VLDENIKAE-MLKLIPAAQF 212
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 118 bits (299), Expect = 6e-33
Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 14/206 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQT-VQVDLQDWARTR-------- 73
GIG + E L++ +I + + QA++++ +T V L
Sbjct: 12 GIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAG 71
Query: 74 -AAVSKVGPVDVLINNAAVARFDRFLDID-EENLIDSIFDVNIKAVINISQVVSKTMIDH 131
+ + V +N V+ L + V A +
Sbjct: 72 VGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAM 131
Query: 132 KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
G +A + + H Y+ SK A+ + R ++ +R+N V P V T
Sbjct: 132 L-AGDEARAIELAEQQG-QTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETP 189
Query: 192 MGRTGWSDPAKAGPMLAK-TPLGRFA 216
+ + +DP PLGR +
Sbjct: 190 LLQASKADPRYGESTRRFVAPLGRGS 215
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 118 bits (299), Expect = 6e-33
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 13/202 (6%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAFP----NVQTVQVDLQDWARTRAAVS 77
GIG+ I L + +++ +++ + + + T D+ A A +
Sbjct: 12 GIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMK 71
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
G +DV++NNA + R + + + D + D+N+ V +Q +K M+ +
Sbjct: 72 TAIDAWGTIDVVVNNAGITRDTLLIRMKKSQW-DEVIDLNLTGVFLCTQAATKIMMKKR- 129
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
+G I+N++S+ G G Y+A+KA + ++T A E NI VN V P + + M
Sbjct: 130 KGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMT 189
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
+ + +L PLGR
Sbjct: 190 A-KLGEDMEKK-ILGTIPLGRT 209
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 118 bits (298), Expect = 1e-32
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 13/202 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPN-----VQTVQVDLQDWARTRAAVS 77
GIGR I EKL+ + +I + ++ + N V+++L A
Sbjct: 18 GIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFE 77
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
++ +D+L+NNA + R FL + + + + VN+ ++Q + MI +
Sbjct: 78 EIYNLVDGIDILVNNAGITRDKLFLRMSLLD-WEEVLKVNLTGTFLVTQNSLRKMIKQR- 135
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G IVN+SS+ G T G YS +KA L T+++A EL P N+ VN+V P + T M
Sbjct: 136 WGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMT 195
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
S+ K + PLGRF
Sbjct: 196 A-VLSEEIKQK-YKEQIPLGRF 215
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 118 bits (298), Expect = 2e-32
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAVSKV-- 79
G GR I E +I ++ LD L A+P + + +D+ D R + V
Sbjct: 16 GFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLA 75
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSI 137
G VDVL+NNA + F + E + +F++++ +++ + M + GS+
Sbjct: 76 RYGRVDVLVNNAGRTQVGAFEETTERE-LRDLFELHVFGPARLTRALLPQMRERG-SGSV 133
Query: 138 VNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGW 197
VN+SS G+ + G + YSA+KAAL+ ++ +A E+ P+ I+V V+P RT
Sbjct: 134 VNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAF-----RTNL 188
Query: 198 SDPA 201
Sbjct: 189 FGKG 192
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 118 bits (297), Expect = 2e-32
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 23 GIGRCIVEKLSQH---EAIIIALSKTQANLDSLKQAF------PNVQTVQVDLQDWARTR 73
GIG+ + + + +I ++ L+ LK+ V Q+D+ + +
Sbjct: 44 GIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIK 103
Query: 74 AAVSKV----GPVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTM 128
+ + +D+L+NNA A DR I E+ I +FD N+ A+INI+Q V
Sbjct: 104 PFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED-IQDVFDTNVTALINITQAVLPIF 162
Query: 129 IDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVV 188
G IVN+ SIAG+ A +IY ASK A+ + T ++ EL IRV + P +V
Sbjct: 163 QAKN-SGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLV 221
Query: 189 MT 190
T
Sbjct: 222 ET 223
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 116 bits (293), Expect = 4e-32
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 23 GIGRCIVEKLSQHEA-IIIALSKTQANLDSLKQAFPN-----VQTVQVDLQDWARTRAAV 76
GIGR I +L++ + I + + + + + V + +L + A V
Sbjct: 12 GIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALV 71
Query: 77 SKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
+ G +D L+NNA + R + + +E+ +++ + N+ AV ++ K M+ +
Sbjct: 72 HQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDW-EAVLEANLSAVFRTTREAVKLMMKAR 130
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G IVN++S+ G G Y ASKA L TR +A E I VN+V P + T+M
Sbjct: 131 -FGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEM 189
Query: 193 GRTGWSDPAKAGPMLAKTPLGRF 215
K L + P GRF
Sbjct: 190 TE-RLPQEVKEA-YLKQIPAGRF 210
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 116 bits (293), Expect = 5e-32
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG I ++L+ + + L V+VD+ D A + V
Sbjct: 26 GIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-------GVEVDVTDSDAVDRAFTAVEEH 78
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
GPV+VL++NA ++ + + EE + + + N+ ++Q S++M +K G ++
Sbjct: 79 QGPVEVLVSNAGLSADAFLMRMTEEK-FEKVINANLTGAFRVAQRASRSMQRNK-FGRMI 136
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
+ S++G + Y+ASKA + + R++A EL N+ N V P + T M R
Sbjct: 137 FIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTR-ALD 195
Query: 199 DPAKAGPMLAKTPLGRF 215
+ + G L P R
Sbjct: 196 ERIQQG-ALQFIPAKRV 211
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 116 bits (292), Expect = 7e-32
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 15/197 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
GIG I + + ++ + V+ D+ D + A ++
Sbjct: 32 GIGLAIARAFADAGDKVAITYRSGEPPE-------GFLAVKCDITDTEQVEQAYKEIEET 84
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
GPV+VLI NA V + + + EE+ S+ + N+ + + ++ M+ K +G +V
Sbjct: 85 HGPVEVLIANAGVTKDQLLMRMSEED-FTSVVETNLTGTFRVVKRANRAMLRAK-KGRVV 142
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRTGWS 198
+SS+ G G Y+ASKA L R++A ELG NI N V P V T M + +
Sbjct: 143 LISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTK-VLT 201
Query: 199 DPAKAGPMLAKTPLGRF 215
D +A ++++ PLGR+
Sbjct: 202 DEQRAN-IVSQVPLGRY 217
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 116 bits (292), Expect = 2e-31
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 62 VQVDLQDWARTRAAVSKV----GPVDVLINNAAV-ARFDRFLDIDEENLIDSIFDVNIKA 116
+ DL D + V + G +++L+NN A I E L + F +NI +
Sbjct: 102 LPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQL-EKTFRINIFS 160
Query: 117 VINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTI---YSASKAALDSITRTMALEL 173
++++ + K I+N +SI A EG+ YSA+K A+ + TR+++ L
Sbjct: 161 YFHVTKAALSHL---KQGDVIINTASI---VAYEGNETLIDYSATKGAIVAFTRSLSQSL 214
Query: 174 GPYNIRVNSVQPTVVMTQMGRTGWSDPAKAGPMLAKTPLGRFA 216
IRVN V P + T + + + + + + P+ R
Sbjct: 215 VQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQ-FGSNVPMQRPG 256
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 114 bits (289), Expect = 2e-31
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 16/202 (7%)
Query: 23 GIGRCIVEKLSQHEAIII---ALSKTQAN--LDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIGR I +L+ A + A S A+ + ++ A V+ D+ + A +
Sbjct: 39 GIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFA 98
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
V G +DVL+NNA + R L + ++ S+ D+N+ V S+ +K M+ +
Sbjct: 99 AVIERWGRLDVLVNNAGITRDTLLLRMKRDDW-QSVLDLNLGGVFLCSRAAAKIMLKQR- 156
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G I+N++S+ G+ G YSA+KA + +T+T+A EL I VN+V P + T M
Sbjct: 157 SGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM- 215
Query: 194 RTGWSDPAKAGPMLAKTPLGRF 215
T K +L PLGR+
Sbjct: 216 -TSELAAEK---LLEVIPLGRY 233
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 113 bits (284), Expect = 7e-31
Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 13/184 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
+G I+E ++ ++ + + + + + ++ +
Sbjct: 14 ALGSAILEFFKKNGYTVLNIDLSANDQADSNILVD----GNKNWTEQEQSILEQTASSLQ 69
Query: 80 -GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
VD + A D D + ++ + +++ + + K G +
Sbjct: 70 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHL---KPGGLLQ 126
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRTMALELG--PYNIRVNSVQPTVVMTQMGRTG 196
+ A Y +KAA+ +T ++A + P N V ++ P + T M R
Sbjct: 127 LTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKW 186
Query: 197 WSDP 200
+
Sbjct: 187 MPNA 190
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 114 bits (287), Expect = 2e-30
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 21/199 (10%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQ-----------TVQVDLQDWAR 71
GIG+ I K ++ A I+ +KT L VD++D +
Sbjct: 56 GIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQ 115
Query: 72 TRAAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKT 127
AAV K G +D+L+NNA+ LD + L D + +VN + S+
Sbjct: 116 ISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRL-DLMMNVNTRGTYLASKACIPY 174
Query: 128 MIDHKIQGSIVNVSSIAGKTA--LEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
+ K I+N+S + H Y+ +K + MA E I VN++ P
Sbjct: 175 LKKSK-VAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFKG-EIAVNALWP 232
Query: 186 -TVVMTQMGRTGWSDPAKA 203
T + T ++
Sbjct: 233 KTAIHTAAMDMLGGPGIES 251
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 112 bits (282), Expect = 3e-30
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 17/211 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
G+G E+L A + L + ++ + N D+ + A++
Sbjct: 23 GLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKG 82
Query: 80 --GPVDVLINNAAVARFDRFLDIDEEN-----LIDSIFDVNIKAVINISQVVSKTMIDHK 132
G VDV +N A +A + ++ + + DVN+ N+ ++V+ M ++
Sbjct: 83 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNE 142
Query: 133 IQ-----GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTV 187
G I+N +S+A G YSASK + +T +A +L P IRV ++ P +
Sbjct: 143 PDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGL 202
Query: 188 VMTQMGRTGWSDPAKAGPMLAKTPLGRFAGK 218
T + + + ++ P G
Sbjct: 203 FGTPLLT-SLPEKVCNF-LASQVPFPSRLGD 231
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 111 bits (280), Expect = 4e-30
Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 15/209 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
G+G + L+Q A ++ L + V+ D+ + A AA++
Sbjct: 18 GLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQ 77
Query: 80 --GPVDVLINNAAVARFDRFLDIDEE---NLIDSIFDVNIKAVINISQVVSKTMIDHKIQ 134
G V L+N A A ++ L + VN+ N+ ++ ++ M +
Sbjct: 78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPD 137
Query: 135 -----GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVM 189
G IVN +SIA G Y+ASK + ++T A EL + IRV ++ P +
Sbjct: 138 ADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFD 197
Query: 190 TQMGRTGWSDPAKAGPMLAKTPLGRFAGK 218
T M G + + A P G+
Sbjct: 198 TPMMA-GMPQDVQDA-LAASVPFPPRLGR 224
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 111 bits (279), Expect = 2e-29
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Query: 23 GIGRCIVEKLSQHEAIIIA---------LSKTQANLDSLKQAFPNVQTVQVDLQDWARTR 73
G GR E L+ + A S +A + +++T+++D+Q
Sbjct: 16 GFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVD 75
Query: 74 AAVSKV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMI 129
A+ ++ G +DVLI+NA F E ++D+N+ + +++ M
Sbjct: 76 RAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQ-FAELYDINVLSTQRVNRAALPHMR 134
Query: 130 DHKIQGSIVNVSSIAGKTALE-GHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVV 188
K G ++ +SS + Y A+KAA+D+I A EL + I + + P
Sbjct: 135 RQK-HGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAF 193
Query: 189 MTQMGRTGWSDPAKAG 204
+G + A +G
Sbjct: 194 -----TSGTNHFAHSG 204
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 110 bits (276), Expect = 2e-29
Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 23 GIGRCIVEKLSQHEA---IIIALS---KTQANLDSLKQAFPNVQTVQVDLQDWARTRAAV 76
G+G +V+ L + + L+ L + N+ +++DL+++ V
Sbjct: 32 GLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLV 91
Query: 77 SKV------GPVDVLINNAAVA-RFDRFLDIDEENLIDSIFDVNIKAVINISQVV----- 124
+ + ++VL NNA +A + R + + L+D+ N I +++
Sbjct: 92 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDT-LQTNTVVPIMLAKACLPLLK 150
Query: 125 -----SKTMIDHKIQGSIVNVSSIAG---KTALEGHTIYSASKAALDSITRTMALELGPY 176
+++ + +I+N+SSI G G Y SK+AL++ T++++++L P
Sbjct: 151 KAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQ 210
Query: 177 NIRVNSVQPTVVMTQMG 193
I S+ P V T MG
Sbjct: 211 RIMCVSLHPGWVKTDMG 227
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 110 bits (278), Expect = 3e-29
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 23 GIGRCIVEKLSQHEA---IIIALSKTQANLDSLKQAF-------PNVQTVQVDLQDWART 72
GIG + +L+ + + A + L +A +++T+Q+D++D
Sbjct: 13 GIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSV 72
Query: 73 RAAVSKV--GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMID 130
AA +V G VDVL+ NA + + E+ + S+ DVN+ + + Q M
Sbjct: 73 AAARERVTEGRVDVLVCNAGLGLLGPLEALGEDA-VASVLDVNVVGTVRMLQAFLPDM-- 129
Query: 131 HKIQGS--IVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVV 188
K +GS ++ S+ G L + +Y ASK AL+ + ++A+ L P+ + ++ ++ V
Sbjct: 130 -KRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPV 188
Query: 189 MTQMGRTGWSDPAKAGPMLAKTPLGRFAGKLK 220
T P + RF L
Sbjct: 189 HTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLA 220
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 108 bits (271), Expect = 1e-28
Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 16/210 (7%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF-PNVQTVQVDLQDWARTRAAVSKV-- 79
G+G V +L ++ +L + V ++ AA+
Sbjct: 41 GLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQ 100
Query: 80 --GPVDVLINNAAVARFDRFLDIDEENL----IDSIFDVNIKAVINISQVVSKTMIDHKI 133
++ + R + D D+ + N++++V+ ++ +
Sbjct: 101 LGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEP 160
Query: 134 Q-----GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVV 188
+ G++V +SIAG G T Y+A+KA + +T A +L IRVN++ P +
Sbjct: 161 RENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTM 220
Query: 189 MTQMGRTGWSDPAKAGPMLAKTPLGRFAGK 218
T + + A A A P + G
Sbjct: 221 KTPIME-SVGEEALAK-FAANIPFPKRLGT 248
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 111 bits (279), Expect = 1e-28
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 12/200 (6%)
Query: 23 GIGRCIVEKLSQHEA--IIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV- 79
GIG I E ++ A + I + +L + + +D+ + V
Sbjct: 224 GIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKV-GGTALTLDVTADDAVDKITAHVT 282
Query: 80 ----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQG 135
G VD+L+NNA + R ++DE+ D++ VN+ A +++ + + G
Sbjct: 283 EHHGGKVDILVNNAGITRDKLLANMDEKRW-DAVIAVNLLAPQRLTEGLVGNGTIGE-GG 340
Query: 136 SIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMGRT 195
++ +SS+AG G T Y+ +KA + + +A L I +N+V P + T+M T
Sbjct: 341 RVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKM--T 398
Query: 196 GWSDPAKAGPMLAKTPLGRF 215
A L +
Sbjct: 399 EAIPLATREVGRRLNSLFQG 418
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 105 bits (265), Expect = 5e-28
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
G+GR L ++ L D L++ ++ V+ D+ R AV++
Sbjct: 13 GLGRAAALALKARGYRVVVL-------D-LRREGEDLIYVEGDVTREEDVRRAVARAQEE 64
Query: 80 GPVDVLINNAAVARFDRFLDIDEE---NLIDSIFDVNIKAVINISQVVSKTMI-----DH 131
P+ +++ A V ++ L + + +VN+ N+ ++ + M
Sbjct: 65 APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAE 124
Query: 132 KIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
+G IVN +S+A G Y+ASK + ++T A EL + IRV +V P + T
Sbjct: 125 GQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTP 184
Query: 192 MGRTGWSDPAKAGPMLAKTPLGRFAGK 218
+ + G + AKA + A+ P G+
Sbjct: 185 LLQ-GLPEKAKAS-LAAQVPFPPRLGR 209
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 105 bits (263), Expect = 9e-28
Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Query: 23 GIGRCIVEKLSQ--HEAIIIALSKTQANLDSLKQ-AFPNVQTVQVDLQDWARTRAAVSKV 79
GIG +V++L + + IIA ++ LK V + + + VSKV
Sbjct: 14 GIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKV 73
Query: 80 G------PVDVLINNAAVAR-FDRFLDIDEENLIDSIFDVNIKAVINISQ---------- 122
G + +LINNA V + + + + + DVN +V+ ++Q
Sbjct: 74 GEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAE-QLDVNTTSVVLLTQKLLPLLKNAA 132
Query: 123 VVSKTMIDHKIQGSIVNVSSIAG-------KTALEGHTIYSASKAALDSITRTMALELGP 175
+ +++ +SS G +A Y SKAA++ RT+A++L
Sbjct: 133 SKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKD 192
Query: 176 YNIRVNSVQPTVVMTQMG 193
N+ V + P V T +G
Sbjct: 193 DNVLVVNFCPGWVQTNLG 210
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 104 bits (262), Expect = 2e-27
Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--- 79
G+G ++L A ++ L ++ + + D+ D A +A+
Sbjct: 20 GLGLATTKRLLDAGAQVVVLDIRGEDV--VADLGDRARFAAADVTDEAAVASALDLAETM 77
Query: 80 GPVDVLINNAAVARFDRFLDIDE---ENLIDSIFDVNIKAVINISQVVSKTMI------- 129
G + +++N A R L D I D+N+ N+ ++ ++ +
Sbjct: 78 GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGP 137
Query: 130 DHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVM 189
+ + +G I+N +S+A G YSASK + +T +A +L + IRV ++ P +
Sbjct: 138 NAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFD 197
Query: 190 TQMGRTGWSDPAKAGPMLAKTPLGRFAGK 218
T + + A+A + + P G
Sbjct: 198 TPLLA-SLPEEARAS-LGKQVPHPSRLGN 224
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 97.5 bits (243), Expect = 1e-23
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 54 QAFPNVQTVQVDLQDWAR-TRAAVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDV 112
A + V D + AV G V V+INNA + R + E++ + DV
Sbjct: 67 VAVADYNNVL----DGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKD-YKLVIDV 121
Query: 113 NIKAVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALE 172
++ +++ K G IVN SS AG G Y+++K+AL T+A E
Sbjct: 122 HLNGAFAVTKAAWPYFQKQK-YGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKE 180
Query: 173 LGPYNIRVNSVQPTVVMTQM 192
YNI+ N++ P ++M
Sbjct: 181 GAKYNIKANAIAPL-ARSRM 199
Score = 94.8 bits (236), Expect = 2e-22
Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 62 VQVDLQDWART--RAAVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVIN 119
Q D+ + + + K G +D+L+NNA + R F + ++ DS+ V++ N
Sbjct: 374 DQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQE-WDSVQQVHLIGTFN 432
Query: 120 ISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIR 179
+S++ ++ + G I+N++S +G G YS+SKA + +++TMA+E NI+
Sbjct: 433 LSRLAWPYFVEKQ-FGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIK 491
Query: 180 VNSVQPTVVMTQMGRTGWSDPAKA 203
VN V P T M + + K
Sbjct: 492 VNIVAPH-AETAMTLSIMREQDKN 514
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 94.0 bits (234), Expect = 6e-23
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 73 RAAVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
+ A+ G +DV++NNA + R F I +E+ D I V+++ +++ M
Sbjct: 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDED-WDIIQRVHLRGSFQVTRAAWDHMKKQN 142
Query: 133 IQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQM 192
G I+ +S +G G YSA+K L + T+ +E NI N++ P ++M
Sbjct: 143 -YGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPN-AGSRM 200
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 89.1 bits (221), Expect = 1e-20
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 65 DLQDWAR-TRAAVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQV 123
+ D A+ A+ G VD+L+NNA + R + E++ + + DV++K +Q
Sbjct: 85 SVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQD-WNLVNDVHLKGSFKCTQA 143
Query: 124 VSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSV 183
M G I+ SS +G G Y+A+K L + T+A+E N+ N +
Sbjct: 144 AFPYMKKQN-YGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVI 202
Query: 184 QPTVV--MTQ----MGRTGWSDPAKAGPMLA 208
PT MT+ P P++A
Sbjct: 203 VPTAASRMTEGILPDILFNELKPKLIAPVVA 233
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 86.3 bits (214), Expect = 2e-20
Identities = 52/269 (19%), Positives = 90/269 (33%), Gaps = 74/269 (27%)
Query: 23 GIGRCIVEKL-SQHEAIIIA----LSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVS 77
GIG IV L ++ +++ QA + L+ + + Q+D+ D RA
Sbjct: 15 GIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRD 74
Query: 78 KV----GPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+ G +DVL+NNA +A + N ++ + + K
Sbjct: 75 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQ-AEVTMKTNFFGTRDVCTELLPLI---KP 130
Query: 134 QGSIVNVSSIAGKTALEGH----------------------------------------- 152
QG +VNVSSI AL+
Sbjct: 131 QGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPS 190
Query: 153 TIYSASKAALDSITRTMALEL----GPYNIRVNSVQPTVVMTQMGRTGWSDPAKAGPMLA 208
+ Y +K + ++R A +L I +N+ P V T M + + G A
Sbjct: 191 SAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEEG---A 247
Query: 209 KTPL-------------GRFAGKLKPKPW 224
+TP+ G+F + + + W
Sbjct: 248 ETPVYLALLPPDAEGPHGQFVSEKRVEQW 276
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 87.0 bits (216), Expect = 2e-20
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 73 RAAVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
+ AV G +DVL+NNA + R + EE D++ V++K + +
Sbjct: 106 QTAVETFGGLDVLVNNAGIVRDRMIANTSEEEF-DAVIAVHLKGHFATMRHAAAYWRGLS 164
Query: 133 IQ-----GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTV 187
G I+N SS AG G YSA+KA + ++T A E+G Y + VN++ P+
Sbjct: 165 KAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS- 223
Query: 188 VMTQM 192
T+M
Sbjct: 224 ARTRM 228
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 66.1 bits (161), Expect = 5e-13
Identities = 56/295 (18%), Positives = 101/295 (34%), Gaps = 99/295 (33%)
Query: 23 GIGRCIVEKLSQHEAIIIA----LSKTQANLDSLKQAFP-NVQTVQVDLQDWARTRAAV- 76
GIG I ++LS + +++ ++K ++ LK + NV Q+D+ D T +++
Sbjct: 23 GIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLA 82
Query: 77 ----SKVGPVDVLINNAAVARFDRFLDIDEENLIDS------------------------ 108
+ G +D+L+NNA VA F D + + D
Sbjct: 83 DFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETY 142
Query: 109 -----IFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGH----------- 152
+N V ++++V+ + IVNVSS G +
Sbjct: 143 ELAEECLKINYNGVKSVTEVLIPLLQLSD-SPRIVNVSSSTGSLKYVSNETALEILGDGD 201
Query: 153 --------------------------------TIYSASKAALDSITRTMALELGPYNIRV 180
Y+ SKA L++ TR +A ++ +V
Sbjct: 202 ALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLANKIP--KFQV 259
Query: 181 NSVQPTVVMTQMGRTGWSDPAKAGPMLAKTPL-----------GRFAGKLKPKPW 224
N V P +V T+M + A+ G A+ + G F + +
Sbjct: 260 NCVCPGLVKTEMNYGIGNYTAEEG---AEHVVRIALFPDDGPSGFFYDCSELSAF 311
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 53.0 bits (128), Expect = 1e-08
Identities = 44/225 (19%), Positives = 70/225 (31%), Gaps = 59/225 (26%)
Query: 23 GIGRCIVEKLSQHEA-IIIA---LSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
G+G +L++ A +I+A K +A ++ V+ ++DLQD + R
Sbjct: 27 GLGAVTARELARRGATVIMAVRDTRKGEAAARTMAG---QVEVRELDLQDLSSVRRFADG 83
Query: 79 VGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDH------- 131
V DVLINNA + L +D +S N H
Sbjct: 84 VSGADVLINNAGIMAVPYALTVDG---FESQIGTN-----------------HLGHFALT 123
Query: 132 -----KIQGSIVNVSSIA-------------GKTALEGHTIYSASKAALDSITRTMA--L 171
++ +V VSS+A YS SK A T + L
Sbjct: 124 NLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRL 183
Query: 172 ELGPYNIRVNSVQPTVVMTQMGRTGWSDPAKA-----GPMLAKTP 211
+R + P T + A ++A
Sbjct: 184 TAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDA 228
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 49.1 bits (118), Expect = 3e-07
Identities = 30/150 (20%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 44 KTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV----GPVDVLINNAAVARFD---- 95
+ + + L +A + D+ A + V G +D L++ A A +
Sbjct: 45 RLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEG 104
Query: 96 RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIY 155
R++D ++ + + +V+ +++ +++ + + G IV ++ A + + + +
Sbjct: 105 RYIDTRRQDWLLA-LEVSAYSLVAVARRAEPLLRE---GGGIVTLTYYASEKVVPKYNVM 160
Query: 156 SASKAALDSITRTMALELGPYNIRVNSVQP 185
+ +KAAL++ R +A ELGP +RVN++
Sbjct: 161 AIAKAALEASVRYLAYELGPKGVRVNAISA 190
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 48.1 bits (115), Expect = 6e-07
Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 34/159 (21%)
Query: 24 IGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPVD 83
+GR + E+L+ I+ +L L A PN + VQ DL D A V+ D
Sbjct: 15 LGRVMRERLAPMAEILRLA-----DLSPLDPAGPNEECVQCDLADANAVNAMVAG---CD 66
Query: 84 VLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSI 143
+++ ++ E + I NI + N+ + H IV SS
Sbjct: 67 GIVHLGGISV---------EKPFEQILQGNIIGLYNLYEA----ARAHGQP-RIVFASSN 112
Query: 144 A--G----------KTALEGHTIYSASKAALDSITRTMA 170
G +Y SK +++ R
Sbjct: 113 HTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYF 151
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 47.6 bits (114), Expect = 8e-07
Identities = 30/112 (26%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 78 KVGPVDVLINNAAVARFD----RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
VG +D + ++ A A + RF + E + + D++ ++ ++ K M +
Sbjct: 109 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLA-QDISSYSLTIVAHEAKKLMPE--- 164
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
GSIV + + G+ A++ + + +KA+L++ + +AL+LGP NIRVN++
Sbjct: 165 GGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISA 216
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 46.8 bits (112), Expect = 2e-06
Identities = 29/170 (17%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 28 IVEKLSQHEAIIIALS----KTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV---- 79
I + + A + A + K + + + + F + V+ D+ + +
Sbjct: 39 IAKSFHREGAQL-AFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW 97
Query: 80 GPVDVLINNAAVARFD----RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQG 135
G +D+++++ A A + +D E + D+++ ++I +++ + M G
Sbjct: 98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIA-MDISVYSLIALTRELLPLMEGR--NG 154
Query: 136 SIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
+IV +S + + + + +KAAL+S R +A ++ + R+N++
Sbjct: 155 AIVTLSYYGAEKVVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISA 204
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 46.0 bits (110), Expect = 3e-06
Identities = 27/170 (15%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 28 IVEKLSQHEAIIIALS----KTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV---- 79
I + A + A + + + + Q + ++D+ ++ + V
Sbjct: 24 IAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82
Query: 80 GPVDVLINNAAVARFD----RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQG 135
G +D ++++ A A + L+ + + ++++ ++I ++ + + +
Sbjct: 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTA-MEISVYSLIELTNTLKPLLNN---GA 138
Query: 136 SIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
S++ +S + + + + +KAAL+S R +A++LG ++IRVN++
Sbjct: 139 SVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSA 188
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 45.7 bits (109), Expect = 4e-06
Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 28 IVEKLSQHEAIIIALS----KTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV---- 79
I + + A + A + + ++ L + D+ D A A +
Sbjct: 49 IAKAAREAGAEL-AFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW 107
Query: 80 GPVDVLINNAAVARFD----RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQG 135
G +D L++ + D R++D E N +++ +++ ++ +S+ K M D G
Sbjct: 108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTM-LISVYSLTAVSRRAEKLMAD---GG 163
Query: 136 SIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
SI+ ++ + + + + +KAAL++ + +A++LGP NIRVN++
Sbjct: 164 SILTLTYYGAEKVMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISA 213
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 45.7 bits (109), Expect = 5e-06
Identities = 34/170 (20%), Positives = 73/170 (42%), Gaps = 17/170 (10%)
Query: 28 IVEKLSQHEAIIIALS----KTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV---- 79
I + + A + AL+ + +D L ++ TV D+ D +
Sbjct: 48 IAKAVCAQGAEV-ALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEW 106
Query: 80 GPVDVLINNAAVARFD----RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQG 135
G +D +++ A + + R++D N + S+ ++ + I+ M + G
Sbjct: 107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSM-HISCYSFTYIASKAEPLMTN---GG 162
Query: 136 SIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
SI+ +S + + + + KAAL++ + +A++LG IRVN++
Sbjct: 163 SILTLSYYGAEKVVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISA 212
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 45.2 bits (108), Expect = 5e-06
Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 78 KVGPVDVLINNAAVARFD----RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKI 133
+VG + + + A A + +L+ + + + + +++ ++ + + M +
Sbjct: 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAH-NISSYSLTAVVKAARPMMTE--- 139
Query: 134 QGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
GSIV ++ + G+ + + + +KA+LD+ + +A +LG NIRVNS+
Sbjct: 140 GGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISA 191
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 45.2 bits (108), Expect = 6e-06
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
+++ +S + + A+ + + +KA+L++ R MA +GP +RVN++
Sbjct: 142 SALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISA 192
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 44.5 bits (106), Expect = 1e-05
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
S+V ++ I + A+ + +KA+L++ R AL LG I+VN+V
Sbjct: 159 ASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSA 209
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 44.5 bits (106), Expect = 1e-05
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 135 GSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYNIRVNSVQP 185
S++ +S + + A+ + +KAAL++ R +A+ LG +RVN++
Sbjct: 147 ASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISA 197
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 43.7 bits (104), Expect = 2e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 159 KAALDSITRTMALELGPYNIRVNSV 183
K+AL+S+ R +A E G Y +R N V
Sbjct: 165 KSALESVNRFVAREAGKYGVRSNLV 189
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 44.1 bits (103), Expect = 2e-05
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
+ R ++ L+ + +T + L + + +D+ D A A V+K
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAK---H 69
Query: 83 DVLIN 87
D++I+
Sbjct: 70 DLVIS 74
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 42.8 bits (101), Expect = 4e-05
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 96 RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIY 155
L+ + + +I + + +++ M G+ ++++ IA + + G+
Sbjct: 136 PLLETSRKGYLAAI-SASSYSFVSLLSHFLPIMNP---GGASISLTYIASERIIPGYGGG 191
Query: 156 -SASKAALDSITRTMALELGP-YNIRVNSVQP 185
S++KAAL+S TR +A E G NIRVN++
Sbjct: 192 MSSAKAALESDTRVLAFEAGRKQNIRVNTISA 223
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 42.5 bits (100), Expect = 5e-05
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 96 RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHT-I 154
L+ + + + + + +++ Q M + GS V +S +A + + G+
Sbjct: 137 PLLETSRKGYLAAS-SNSAYSFVSLLQHFGPIMNE---GGSAVTLSYLAAERVVPGYGGG 192
Query: 155 YSASKAALDSITRTMALELGP-YNIRVNSVQPTVVMTQMGR--TGWSDPAKAGPML---- 207
S++KAAL+S TRT+A E G Y +RVN++ + ++ + + +
Sbjct: 193 MSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSY 252
Query: 208 AKTPLGR 214
PL R
Sbjct: 253 NNAPLRR 259
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 42.5 bits (100), Expect = 5e-05
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 96 RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIY 155
L + + ++ + + +++ Q M + GS + +S IA + + G+
Sbjct: 150 PLLQTSRKGYLAAV-SSSSYSFVSLLQHFLPLMKE---GGSALALSYIASEKVIPGYGGG 205
Query: 156 -SASKAALDSITRTMALELG-PYNIRVNSVQPTVVMTQMGR--TGWSDPAKAGPML---- 207
S++KAAL+S RT+A E G +RVN + + ++ D +
Sbjct: 206 MSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSE 265
Query: 208 AKTPLGR 214
A PL +
Sbjct: 266 ANAPLQK 272
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 41.0 bits (96), Expect = 2e-04
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 96 RFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHT-I 154
L+ + +D++ + ++I++ + M Q SI++++ A + + G+
Sbjct: 130 DLLNTSRKGYLDAL-SKSSYSLISLCKYFVNIMKP---QSSIISLTYHASQKVVPGYGGG 185
Query: 155 YSASKAALDSITRTMALELGP-YNIRVNSV 183
S++KAAL+S TR +A LG YNIR+N++
Sbjct: 186 MSSAKAALESDTRVLAYHLGRNYNIRINTI 215
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 40.1 bits (93), Expect = 4e-04
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 134 QGSIVNVSSIAGKTALE--GHTIYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQ 191
V S I + H +K LD + + L + N V+TQ
Sbjct: 238 GARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQ 297
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 39.9 bits (93), Expect = 4e-04
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPV 82
IGR I L + I N ++L++ ++VD ++ + + +
Sbjct: 26 NIGRAIAWDLKDEFDVYIG----DVNNENLEKVKEFATPLKVDASNFDKLVEVMKE---F 78
Query: 83 DVLIN 87
+++I
Sbjct: 79 ELVIG 83
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 39.2 bits (92), Expect = 6e-04
Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 35/153 (22%)
Query: 24 IGRCIVEKLSQ---HEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVG 80
IG +V L++ + +I D +++ ++ + +D+ + AV K
Sbjct: 11 IGTELVPYLAEKYGKKNVIA--------SDIVQRDTGGIKFITLDVSNRDEIDRAVEKYS 62
Query: 81 PVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNV 140
+D + + A + L E + VN+ NI + H+++ +V
Sbjct: 63 -IDAIFHLAGI------LSAKGEKDPALAYKVNMNGTYNILEA----AKQHRVE-KVVIP 110
Query: 141 SSIA--G----------KTALEGHTIYSASKAA 161
S+I G T T++ +K A
Sbjct: 111 STIGVFGPETPKNKVPSITITRPRTMFGVTKIA 143
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 37.7 bits (88), Expect = 0.002
Identities = 25/159 (15%), Positives = 42/159 (26%), Gaps = 34/159 (21%)
Query: 24 IGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPVD 83
+G I L + +D + + V DL D V D
Sbjct: 14 VGSAIRPHLGTLAHEVRLSD----IVDLGAAE-AHEEIVACDLADAQAVHDLVKDC---D 65
Query: 84 VLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSS- 142
+I+ V+ E + I NI N+ + + IV SS
Sbjct: 66 GIIHLGGVSV---------ERPWNDILQANIIGAYNLYEA----ARNLGKP-RIVFASSN 111
Query: 143 -----------IAGKTALEGHTIYSASKAALDSITRTMA 170
I + ++Y SK + +
Sbjct: 112 HTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYY 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 61/195 (31%)
Query: 36 EAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTR-----------AAVSKVGPVDV 84
+I ++T + L V T +++ +W +S P+
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS--CPLIG 242
Query: 85 LINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSIA 144
+I A + L L +K SQ + V+++A
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSY-----LKGATGHSQGL---------------VTAVA 282
Query: 145 GKTALEGHTIYSASKAALDSITRTMALELGPYNIR------VNSVQPTVVMTQMGRTGWS 198
+ + + + A+ T+ +G +R S+ P+++
Sbjct: 283 IAETDSWESFFVSVRKAI-----TVLFFIG---VRCYEAYPNTSLPPSIL---------E 325
Query: 199 DPAKAG-----PMLA 208
D + PML+
Sbjct: 326 DSLENNEGVPSPMLS 340
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 36.6 bits (84), Expect = 0.004
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 18/110 (16%)
Query: 24 IGRCIVEKLSQHEAI-----IIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
IG + E L + + +++ + VQ D+ D ++A +S
Sbjct: 13 IGNSLAEILPLADTPGGPWKVYGVAR---RTRPAWHEDNPINYVQCDISDPDDSQAKLSP 69
Query: 79 VGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTM 128
+ V + R ++EN + N K N+ V
Sbjct: 70 LTDVTHVFYVTWANRST-----EQEN-----CEANSKMFRNVLDAVIPNC 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.005
Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 45/182 (24%)
Query: 38 IIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAA-----VSKVGPVDV-LINNAA- 90
+ A + T +LD + + L + R V P + +I A
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSII--AES 336
Query: 91 ----VARFDRFLDIDEENL---ID------------------SIF--DVNIKAVI----- 118
+A +D + ++ + L I+ S+F +I ++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 119 -NISQVVSKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSITRTMALELGPYN 177
++ + +++ + S+V ++ +IY K L++ + YN
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVDHYN 454
Query: 178 IR 179
I
Sbjct: 455 IP 456
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 33.9 bits (78), Expect = 0.028
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 35/183 (19%)
Query: 24 IGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPVD 83
+G ++ + + A+ + + + +K +++ + D+ G D
Sbjct: 16 VGSALLNEALNRGFEVTAVVR---HPEKIKIENEHLKVKKADVSSLDEVCEVCK--G-AD 69
Query: 84 VLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVSSI 143
+I+ + I+D IK + I V K ++ + V
Sbjct: 70 AVISAFNPGWNN-----------PDIYDETIKVYLTIIDGVKKAGVNR-----FLMVGGA 113
Query: 144 AGKTALEGHT----------IYSASKAALDSITRTMALELGPYNIRVNSVQPTVVMTQMG 193
G I KA + + E I P M
Sbjct: 114 GSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKE---KEIDWVFFSPAADMRPGV 170
Query: 194 RTG 196
RTG
Sbjct: 171 RTG 173
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 33.8 bits (77), Expect = 0.034
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 24 IGRCIVEKLSQHEAIIIALSKTQANLDSLKQAF------PNVQTVQVDLQDWARTRAAVS 77
IG+ IV L + + + K + ++ L D R A+
Sbjct: 16 IGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK 75
Query: 78 KVGPVDVLINNAAVARFDRFLDIDEENLIDSI 109
+ VDV+I +A +++ L+++I
Sbjct: 76 Q---VDVVI-SALAGGVLSHHILEQLKLVEAI 103
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 32.5 bits (74), Expect = 0.085
Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 14/150 (9%)
Query: 23 GIGRCIVEKLSQHEAIIIALSKTQANL----DSLKQAFPNVQTVQVDLQDWARTRAAVSK 78
+G L+ A ++ + DS+ + F V + D A AV
Sbjct: 130 PVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK-VNVTAAETADDASRAEAV-- 186
Query: 79 VGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIV 138
+ A+ + + + + I A N + ID +G
Sbjct: 187 -KGAHFVFTAGAIG----LELLPQAAWQNE-SSIEIVADYNAQPPLGIGGIDATDKGKEY 240
Query: 139 NVSSIAGKTALEGHTIYSASKAALDSITRT 168
G + G +A + + +
Sbjct: 241 GGKRAFGALGI-GGLKLKLHRACIAKLFES 269
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 32.2 bits (73), Expect = 0.18
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 65 DLQDWARTRAAVSKVGPVDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVV 124
L +++GPV + N A V R + E + N+ +V
Sbjct: 1948 SLDGARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFF-QDVSKPKYSGTANLDRVT 2006
Query: 125 SKTMIDHKIQGSIVNVSSIAGKTALEGHTIYSASKAALDSI 165
+ + V SS++ G Y + +A++ I
Sbjct: 2007 REACPE---LDYFVIFSSVSCGRGNAGQANYGFANSAMERI 2044
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 30.7 bits (69), Expect = 0.36
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 17/80 (21%)
Query: 82 VDVLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHKIQGSIVNVS 141
D +++ A V R + + N+ + ++ ++++ I S S
Sbjct: 47 ADFIVHLAGVNRPEHDKE---------FSLGNVSYLDHVLDILTRNTKKPAILLS----S 93
Query: 142 SIAGKTALEGHTIYSASKAA 161
SI Y SK
Sbjct: 94 SIQA----TQDNPYGESKLQ 109
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 28.5 bits (64), Expect = 2.0
Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 36/160 (22%)
Query: 24 IGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFP-----NVQTVQVDLQDWARTRAAVSK 78
+GR + ++L + ++ + +D + P V DL V
Sbjct: 26 VGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE- 84
Query: 79 VGPVDVLINNAA------VARFDRFLDIDEENLIDSIFDVNIKAVINISQVVSKTMIDHK 132
DV+ + AA FD+ + +N+ + +
Sbjct: 85 -ARPDVIFHLAAIVSGEAELDFDKG------------YRINLDGTRYLFDAIRIANGKDG 131
Query: 133 IQGSIVNVSSIA--GK---------TALEGHTIYSASKAA 161
+ +V SSIA G T Y KA
Sbjct: 132 YKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAI 171
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 28.2 bits (63), Expect = 2.6
Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 30 EKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPVDVLINNA 89
EK++Q A ++ ++ +Q +P++ D +++ P+D + +NA
Sbjct: 73 EKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVD-------KPLDAVFSNA 125
Query: 90 AV 91
+
Sbjct: 126 ML 127
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 27.7 bits (62), Expect = 2.9
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 40 IALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKV--GPVDVLINNAAVARF 94
+AL + A + L++ +P + V D A+ V G D ++ A +
Sbjct: 142 VALVRNSAAIPLLQRRYPQAKVVTAD-----NPSEAMLMVANGQADAVVQTQISASY 193
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 27.9 bits (63), Expect = 3.0
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 43/147 (29%)
Query: 48 NLDSLK--QAFPNVQTVQVDLQDWARTRAAVSKVGPVDVLINNAAVARFDRFLDIDEENL 105
D+L + N + V D+++ ++K P D + A
Sbjct: 39 ATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP-DSCFHLAGQVAMTT--------- 88
Query: 106 IDSI------FDVNIKAVINISQVVSKTMIDHKIQ--------GSIVNVSSIAG------ 145
SI F++N+ +N+ + V + + I G +
Sbjct: 89 --SIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTC 146
Query: 146 ---------KTALEGHTIYSASKAALD 163
T L+ H+ Y SK A D
Sbjct: 147 VDKPNGYDESTQLDFHSPYGCSKGAAD 173
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 27.5 bits (62), Expect = 3.5
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 23/100 (23%)
Query: 24 IGRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPVD 83
+GR I ++L +I +D+ + ++ P +
Sbjct: 24 LGREIQKQLKGKNVEVIPTDVQ-----------------DLDITNVLAVNKFFNEKKP-N 65
Query: 84 VLINNAAVARFDRFLDIDEENLIDSIFDVNIKAVINISQV 123
V+IN AA D+ EE D + +N N++
Sbjct: 66 VVINCAAHTAVDK----CEEQ-YDLAYKINAIGPKNLAAA 100
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 27.1 bits (61), Expect = 4.9
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 25 GRCIVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQDWARTRAAVSKVGPVDV 84
G+ + E+L+ E I K +D+ + ++ + V ++ P +
Sbjct: 18 GKQLQEELNPEEYDIYPFDKK-----------------LLDITNISQVQQVVQEIRP-HI 59
Query: 85 LINNAA 90
+I+ AA
Sbjct: 60 IIHCAA 65
>4dkp_A Clade A/E 93TH057 HIV-1 GP120 core; CD4 mimic, AWS-I-50, viral
protein-I complex; HET: NAG EPE 0LL; 1.80A {Human
immunodeficiency virus type 1} PDB: 4dko_A* 4dkq_A*
4dkr_A* 3se8_G* 3ngb_G* 3se9_G* 3tgt_A* 3u7y_G* 3rjq_A*
3tgs_A* 3tgr_A* 3tih_A 3tgq_A* 3jwo_A* 2qad_A* 3hi1_G*
3dnl_B 3dnn_B 3dno_B 3dnl_C ...
Length = 353
Score = 27.1 bits (61), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 114 IKAVINISQVVSKTMIDHKIQGSIVNVSSIAG 145
IK +IN+ Q + M I G I VS+I G
Sbjct: 281 IKQIINMWQGTGQAMYAPPIDGKINCVSNITG 312
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 27.1 bits (61), Expect = 6.3
Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 47/170 (27%)
Query: 24 IG----RCIVEKLSQHEAIIIALSK-TQA-NLDSLK--QAFPNVQTVQVDLQDWARTRAA 75
IG R I+EK E +I + K N +LK + P V+ D+ D
Sbjct: 15 IGSNFIRYILEKHPDWE--VINIDKLGYGSNPANLKDLEDDPRYTFVKGDVAD----YEL 68
Query: 76 VSKV-GPVDVLINNAAVARFDRFLDIDEENLIDSIFD------VNIKAVINISQVVSKTM 128
V ++ VD +++ AA + DR SI N+ + + + +
Sbjct: 69 VKELVRKVDGVVHLAAESHVDR-----------SISSPEIFLHSNVIGTYTLLESIRR-- 115
Query: 129 IDHKIQGSIVNVS------SIAG-----KTALEGHTIYSASKAALDSITR 167
+ V+VS I L + YSA+KAA D +
Sbjct: 116 --ENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVL 163
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} PDB:
2cmu_A
Length = 330
Score = 26.4 bits (58), Expect = 9.4
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 28 IVEKLSQHEAIIIALSKTQANLDSLKQAFPNVQTVQVDLQD-WAR 71
I++ +++H +++ + + + P V+ +VD D WAR
Sbjct: 39 IIQTIAKHAKVLVCVHTNDTIGYEMLKNLPGVEIAKVDTNDTWAR 83
>3jwd_A HIV-1 GP120 envelope glycoprotein; HIV-1 viral spike, molecular
motion, protein architecture, R triggered entry, type 1
fusion protein, cell membrane, DISU bond; HET: YCM NAG;
2.61A {Human immunodeficiency virus 1} PDB: 1meq_A
Length = 379
Score = 26.4 bits (59), Expect = 9.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 114 IKAVINISQVVSKTMIDHKIQGSIVNVSSIAG 145
IK +IN+ Q V K M I G I S+I G
Sbjct: 288 IKQIINMWQKVGKAMYAPPISGQIRCSSNITG 319
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,572,224
Number of extensions: 208515
Number of successful extensions: 1172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 236
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)