BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14571
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10105|LAB_DROME Homeotic protein labial OS=Drosophila melanogaster GN=lab PE=1 SV=2
Length = 635
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RTNFTNKQLTELEKEFHFN+YLTRARRIEIA+ LQLNETQ
Sbjct: 511 RTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQV 551
>sp|Q08820|HXD1_XENLA Homeobox protein Hox-D1 OS=Xenopus laevis GN=hoxd1 PE=2 SV=3
Length = 300
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Query: 41 GVHPHPTSPSTD-YTTPLTALKY---PPSAALSQHQSLLN--NSGRTNFTNKQLTELEKE 94
G +P P SP++D Y + +K PP ++ + + + RTNFT KQLTELEKE
Sbjct: 159 GTYPKPASPASDSYVSTFDWMKVKRNPPKKSIPSEYGVTSPPCNVRTNFTTKQLTELEKE 218
Query: 95 FHFNKYLTRARRIEIASVLQLNETQT 120
FHFNKYLTRARRIEIA+ LQLN+TQ
Sbjct: 219 FHFNKYLTRARRIEIANSLQLNDTQV 244
>sp|Q08821|HXA1_XENLA Homeobox protein Hox-A1 (Fragment) OS=Xenopus laevis GN=hoxa1 PE=2
SV=1
Length = 240
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQ
Sbjct: 135 NTARTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQV 178
>sp|Q28IU6|HXD1_XENTR Homeobox protein Hox-D1 OS=Xenopus tropicalis GN=hoxd1 PE=2 SV=1
Length = 301
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 10/88 (11%)
Query: 41 GVHPHPTSPSTDYTTPLTALKY------PPSAALSQHQSLLN--NSGRTNFTNKQLTELE 92
G +P P SP++D T ++ + PP +L + + + RTNFT KQLTELE
Sbjct: 162 GTYPKPASPASD--THVSTFDWMKVKRNPPKKSLQSEYGVASPPCTVRTNFTTKQLTELE 219
Query: 93 KEFHFNKYLTRARRIEIASVLQLNETQT 120
KEFHFNKYLTRARRIEIA+ LQLN+TQ
Sbjct: 220 KEFHFNKYLTRARRIEIANSLQLNDTQV 247
>sp|Q1KL10|HXA1A_TAKRU Homeobox protein Hox-A1a OS=Takifugu rubripes GN=hoxa1a PE=3 SV=1
Length = 325
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQ
Sbjct: 213 NTVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQV 256
>sp|Q9IA19|HXA1_HETFR Homeobox protein Hox-A1 OS=Heterodontus francisci GN=HOXA1 PE=3
SV=1
Length = 326
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQ
Sbjct: 222 NTVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQ 264
>sp|P09022|HXA1_MOUSE Homeobox protein Hox-A1 OS=Mus musculus GN=Hoxa1 PE=1 SV=2
Length = 331
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQ
Sbjct: 226 NAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQV 269
>sp|P49639|HXA1_HUMAN Homeobox protein Hox-A1 OS=Homo sapiens GN=HOXA1 PE=1 SV=2
Length = 335
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQ
Sbjct: 230 NAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQV 273
>sp|P31259|HXB1_CHICK Homeobox protein Hox-B1 OS=Gallus gallus GN=HOXB1 PE=3 SV=1
Length = 309
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 63 PPSAALSQHQSLLN--NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
PP A LL N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ L+LNETQ
Sbjct: 198 PPKTAKVSEYGLLGQPNTIRTNFTTKQLTELEKEFHFNKYLTRARRVEIAATLELNETQV 257
>sp|Q01822|HXD1_MOUSE Homeobox protein Hox-D1 OS=Mus musculus GN=Hoxd1 PE=2 SV=1
Length = 327
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 38/41 (92%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RTNF+ KQLTELEKEFHFNKYLTRARRIEIA+ LQLN+TQ
Sbjct: 232 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQV 272
>sp|P14653|HXB1_HUMAN Homeobox protein Hox-B1 OS=Homo sapiens GN=HOXB1 PE=1 SV=2
Length = 301
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 63 PPSAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
PP A L + SG RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 189 PPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 246
>sp|A1YG01|HXB1_PANPA Homeobox protein Hox-B1 OS=Pan paniscus GN=HOXB1 PE=3 SV=1
Length = 301
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 63 PPSAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
PP A L + SG RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 189 PPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 246
>sp|A2T6Z0|HXB1_PANTR Homeobox protein Hox-B1 OS=Pan troglodytes GN=HOXB1 PE=3 SV=1
Length = 301
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 63 PPSAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
PP A L + SG RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 189 PPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 246
>sp|A2T7J2|HXB1_PONPY Homeobox protein Hox-B1 OS=Pongo pygmaeus GN=HOXB1 PE=3 SV=1
Length = 301
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 44 PHPTSPSTDYTTPLTALKY---PPSAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNK 99
P P+ P+T +K PP A L + SG RTNFT +QLTELEKEFHFNK
Sbjct: 167 PCPSEPNTPTARTFDWMKVKRNPPKTAKVSELGLGSPSGLRTNFTTRQLTELEKEFHFNK 226
Query: 100 YLTRARRIEIASVLQLNETQT 120
YL+RARR+EIA+ L+LNETQ
Sbjct: 227 YLSRARRVEIAATLELNETQV 247
>sp|P31357|HXB1_AMBME Homeobox protein Hox-B1 (Fragment) OS=Ambystoma mexicanum PE=3 SV=1
Length = 184
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 40/44 (90%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
NS RTNFT KQL+ELEKEFHFNKYLTRARR+EIA+ L+LNETQ
Sbjct: 88 NSIRTNFTTKQLSELEKEFHFNKYLTRARRVEIAATLELNETQV 131
>sp|P17919|HXB1_MOUSE Homeobox protein Hox-B1 OS=Mus musculus GN=Hoxb1 PE=2 SV=1
Length = 297
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 38/41 (92%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 203 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQV 243
>sp|Q98SI1|HXA1A_DANRE Homeobox protein Hox-A1a OS=Danio rerio GN=hoxa1a PE=2 SV=1
Length = 329
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 40/44 (90%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
N+ RTNF+ KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQ
Sbjct: 226 NTVRTNFSTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQV 269
>sp|A2T6H5|HXB1_MACNE Homeobox protein Hox-B1 OS=Macaca nemestrina GN=HOXB1 PE=3 SV=1
Length = 304
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 63 PPSAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
PP L + SG RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 192 PPKTGKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 249
>sp|A2D649|HXB1_MACMU Homeobox protein Hox-B1 OS=Macaca mulatta GN=HOXB1 PE=3 SV=1
Length = 304
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 63 PPSAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
PP L + SG RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 192 PPKTGKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 249
>sp|A2D4R4|HXB1_ATEGE Homeobox protein Hox-B1 OS=Ateles geoffroyi GN=HOXB1 PE=3 SV=1
Length = 304
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 63 PPSAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
PP L + SG RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 192 PPKTGKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 249
>sp|Q90423|HXB1B_DANRE Homeobox protein Hox-B1b OS=Danio rerio GN=hoxb1b PE=2 SV=3
Length = 307
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 38/40 (95%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RTNFT KQLTELEKEFHFNKYLTRARR+E+A+ L+LNETQ
Sbjct: 212 RTNFTTKQLTELEKEFHFNKYLTRARRVEVAATLELNETQ 251
>sp|Q9GZZ0|HXD1_HUMAN Homeobox protein Hox-D1 OS=Homo sapiens GN=HOXD1 PE=1 SV=1
Length = 328
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 37/41 (90%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RTNF+ KQLTELEKEFHFNKYLTRARRIEIA+ L LN+TQ
Sbjct: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQV 273
>sp|Q90346|HXB1_CYPCA Homeobox protein Hox-B1 OS=Cyprinus carpio GN=hoxb1 PE=2 SV=1
Length = 315
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
N+ RTNFT KQLTELEKEFHF+KYLTRARR+EIA+ L+LNETQ
Sbjct: 222 NTIRTNFTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQV 265
>sp|O42366|HXB1A_DANRE Homeobox protein Hox-B1a OS=Danio rerio GN=hoxb1a PE=2 SV=2
Length = 311
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
N+ RTNFT KQLTELEKEFHF+KYLTRARR+EIA+ L+LNETQ
Sbjct: 218 NTIRTNFTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQ 260
>sp|Q1KKW8|HXB1B_TAKRU Homeobox protein Hox-B1b OS=Takifugu rubripes GN=hoxb1b PE=3 SV=1
Length = 280
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RTNFT KQLTELEKEFHFNKYLTRARR+E+A+ L+LNETQ
Sbjct: 199 RTNFTTKQLTELEKEFHFNKYLTRARRVEVAASLELNETQV 239
>sp|Q98SH9|HXC1A_DANRE Homeobox protein Hox-C1a OS=Danio rerio GN=hoxc1a PE=2 SV=1
Length = 302
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RTNFT KQLTELEKEFHFNKYLTRARRIEIA+ LQL+ETQ
Sbjct: 219 RTNFTTKQLTELEKEFHFNKYLTRARRIEIANPLQLSETQ 258
>sp|O08656|HXA1_RAT Homeobox protein Hox-A1 OS=Rattus norvegicus GN=Hoxa1 PE=2 SV=1
Length = 333
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
N+ RTNFT KQLTELEKEFHFNKYLTRAR EIA+ LQLNETQ
Sbjct: 229 NAVRTNFTTKQLTELEKEFHFNKYLTRARS-EIAASLQLNETQV 271
>sp|Q1KKX5|HXB1A_TAKRU Homeobox protein Hox-B1a OS=Takifugu rubripes GN=hoxb1a PE=3 SV=1
Length = 391
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
N++ RTNF+ +QLTELEKEFHF+KYLTRARR+EIA+ L+LNETQ
Sbjct: 286 NSAIRTNFSTRQLTELEKEFHFSKYLTRARRVEIAATLELNETQ 329
>sp|Q9IA20|HXA2_HETFR Homeobox protein Hox-A2 OS=Heterodontus francisci GN=HOXA2 PE=3
SV=1
Length = 363
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 57 LTALKYPPSAALSQHQS--LLNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRIE 108
L A P ++ LSQ ++ + +N+G RT +TN QL ELEKEFHFNKYL R RR+E
Sbjct: 103 LPASSGPAASCLSQKETHEIPDNTGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVE 162
Query: 109 IASVLQLNETQT 120
IA++L L E Q
Sbjct: 163 IAALLDLTERQV 174
>sp|P14652|HXB2_HUMAN Homeobox protein Hox-B2 OS=Homo sapiens GN=HOXB2 PE=1 SV=1
Length = 356
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 49 PSTDYTTPLTALKYPPSAALSQHQSLLN-----NSG----RTNFTNKQLTELEKEFHFNK 99
PS T+P A P++ + L G RT +TN QL ELEKEFHFNK
Sbjct: 107 PSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNK 166
Query: 100 YLTRARRIEIASVLQLNETQT 120
YL R RR+EIA++L L E Q
Sbjct: 167 YLCRPRRVEIAALLDLTERQV 187
>sp|Q0VCS4|HXA2_BOVIN Homeobox protein Hox-A2 OS=Bos taurus GN=HOXA2 PE=2 SV=1
Length = 372
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 56 PLTALKYPPSAALSQHQSL--LNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRI 107
P +A A LS +SL + SG RT +TN QL ELEKEFHFNKYL R RR+
Sbjct: 111 PASAASATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRV 170
Query: 108 EIASVLQLNETQT 120
EIA++L L E Q
Sbjct: 171 EIAALLDLTERQV 183
>sp|P0C1T1|HXB2_MOUSE Homeobox protein Hox-B2 OS=Mus musculus GN=Hoxb2 PE=2 SV=1
Length = 354
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 145 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 185
>sp|A9L937|HXA2_PAPAN Homeobox protein Hox-A2 OS=Papio anubis GN=HOXA2 PE=3 SV=1
Length = 377
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 41/63 (65%), Gaps = 8/63 (12%)
Query: 66 AALSQHQSL--LNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNE 117
A LS +SL + SG RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E
Sbjct: 126 ACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTE 185
Query: 118 TQT 120
Q
Sbjct: 186 RQV 188
>sp|O42367|HXB2A_DANRE Homeobox protein Hox-B2a OS=Danio rerio GN=hoxb2a PE=2 SV=2
Length = 390
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 36/51 (70%), Gaps = 4/51 (7%)
Query: 73 SLLNNSG----RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
L N SG RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 151 GLDNVSGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 201
>sp|Q1KL11|HXA2A_TAKRU Homeobox protein Hox-A2a OS=Takifugu rubripes GN=hoxa2a PE=3 SV=1
Length = 363
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 141 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 181
>sp|Q1KKZ2|HXA2B_TAKRU Homeobox protein Hox-A2b OS=Takifugu rubripes GN=hoxa2b PE=3 SV=1
Length = 300
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Query: 29 TKVQIPSELSPLGVHP--HPTSPSTDYTTPLTALKYPPSAALSQHQSLLNNSGRTNFTNK 86
T + P E + +G++P HP + ++P A+ P S+ RT +TN
Sbjct: 47 TLIPPPFEQTVIGLNPGTHPRHSRSKQSSP-EAIDVGPGGGTSRRL-------RTAYTNT 98
Query: 87 QLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 99 QLLELEKEFHFNKYLCRPRRVEIAALLDLTEKQV 132
>sp|P31246|HXA2_RAT Homeobox protein Hox-A2 OS=Rattus norvegicus GN=Hoxa2 PE=2 SV=1
Length = 372
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 143 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 183
>sp|O42365|HXA2B_DANRE Homeobox protein Hox-A2b OS=Danio rerio GN=hoxa2b PE=2 SV=2
Length = 363
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 137 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 177
>sp|O43364|HXA2_HUMAN Homeobox protein Hox-A2 OS=Homo sapiens GN=HOXA2 PE=1 SV=1
Length = 376
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 187
>sp|P31245|HXA2_MOUSE Homeobox protein Hox-A2 OS=Mus musculus GN=Hoxa2 PE=2 SV=1
Length = 372
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 143 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 183
>sp|B0VXK3|HXA2_CALJA Homeobox protein Hox-A2 OS=Callithrix jacchus GN=HOXA2 PE=3 SV=1
Length = 375
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 146 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 186
>sp|P31264|HMPB_DROME Homeotic protein proboscipedia OS=Drosophila melanogaster GN=pb
PE=2 SV=2
Length = 782
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 31/41 (75%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RRIEIA+ L L E Q
Sbjct: 202 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQV 242
>sp|Q08727|HXA2_CHICK Homeobox protein Hox-A2 OS=Gallus gallus GN=HOXA2 PE=2 SV=1
Length = 375
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 144 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 184
>sp|P14651|HXB3_HUMAN Homeobox protein Hox-B3 OS=Homo sapiens GN=HOXB3 PE=1 SV=2
Length = 431
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L+E Q
Sbjct: 192 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 231
>sp|P09026|HXB3_MOUSE Homeobox protein Hox-B3 OS=Mus musculus GN=Hoxb3 PE=2 SV=4
Length = 433
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L+E Q
Sbjct: 195 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 234
>sp|P31261|HXA2_NOTVI Homeobox protein Hox-A2 (Fragment) OS=Notophthalmus viridescens
PE=3 SV=1
Length = 90
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 6 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 46
>sp|P02831|HXA3_MOUSE Homeobox protein Hox-A3 OS=Mus musculus GN=Hoxa3 PE=1 SV=2
Length = 443
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q
Sbjct: 196 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 235
>sp|Q08DG7|HXA3_BOVIN Homeobox protein Hox-A3 OS=Bos taurus GN=HOXA3 PE=2 SV=1
Length = 442
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q
Sbjct: 195 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 234
>sp|O43365|HXA3_HUMAN Homeobox protein Hox-A3 OS=Homo sapiens GN=HOXA3 PE=2 SV=1
Length = 443
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q
Sbjct: 195 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 234
>sp|Q1KKX7|HXB3A_TAKRU Homeobox protein Hox-B3a OS=Takifugu rubripes GN=hoxb3a PE=3 SV=1
Length = 474
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L+E Q
Sbjct: 216 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.123 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,266,630
Number of Sequences: 539616
Number of extensions: 2121397
Number of successful extensions: 84028
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1951
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 50120
Number of HSP's gapped (non-prelim): 20449
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)