Query psy14571
Match_columns 123
No_of_seqs 142 out of 1423
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:15:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.4 3.7E-13 1.3E-17 85.7 5.0 50 73-122 14-63 (80)
2 1wh5_A ZF-HD homeobox family p 99.4 3.7E-13 1.3E-17 86.0 4.8 50 73-122 14-67 (80)
3 2kt0_A Nanog, homeobox protein 99.4 6.2E-13 2.1E-17 85.2 5.7 50 73-122 19-68 (84)
4 1wh7_A ZF-HD homeobox family p 99.4 3.6E-13 1.2E-17 86.2 4.2 49 73-122 14-67 (80)
5 2cra_A Homeobox protein HOX-B1 99.4 4E-13 1.4E-17 83.5 4.0 50 73-122 4-53 (70)
6 2djn_A Homeobox protein DLX-5; 99.4 5E-13 1.7E-17 83.0 3.9 50 73-122 4-53 (70)
7 2dmu_A Homeobox protein goosec 99.3 5.7E-13 2E-17 82.7 4.0 49 74-122 5-53 (70)
8 2da2_A Alpha-fetoprotein enhan 99.3 6.6E-13 2.3E-17 82.3 3.9 50 73-122 4-53 (70)
9 2h1k_A IPF-1, pancreatic and d 99.3 5.1E-13 1.8E-17 81.4 3.3 48 75-122 2-49 (63)
10 2vi6_A Homeobox protein nanog; 99.3 4.6E-13 1.6E-17 81.3 3.0 48 75-122 2-49 (62)
11 1nk2_P Homeobox protein VND; h 99.3 7.9E-13 2.7E-17 83.6 4.0 50 73-122 6-55 (77)
12 2da3_A Alpha-fetoprotein enhan 99.3 6.9E-13 2.4E-17 84.1 3.7 50 73-122 14-63 (80)
13 2r5y_A Homeotic protein sex co 99.3 1.1E-12 3.6E-17 85.0 4.4 50 73-122 25-74 (88)
14 2da1_A Alpha-fetoprotein enhan 99.3 6.2E-13 2.1E-17 82.5 3.0 50 73-122 4-53 (70)
15 2cue_A Paired box protein PAX6 99.3 1E-12 3.5E-17 83.6 4.0 50 73-122 4-53 (80)
16 2hdd_A Protein (engrailed home 99.3 7.2E-13 2.4E-17 80.2 3.1 47 76-122 3-49 (61)
17 1ig7_A Homeotic protein MSX-1; 99.3 9.3E-13 3.2E-17 78.8 3.5 46 77-122 1-46 (58)
18 1puf_A HOX-1.7, homeobox prote 99.3 1.3E-12 4.4E-17 82.6 4.3 50 73-122 10-59 (77)
19 2dms_A Homeobox protein OTX2; 99.3 1.4E-12 4.7E-17 83.0 4.0 50 73-122 4-53 (80)
20 2e1o_A Homeobox protein PRH; D 99.3 1.6E-12 5.5E-17 80.7 4.0 49 74-122 5-53 (70)
21 1bw5_A ISL-1HD, insulin gene e 99.3 1.4E-12 4.9E-17 80.0 3.7 48 75-122 2-49 (66)
22 1b8i_A Ultrabithorax, protein 99.3 1.4E-12 4.9E-17 83.2 3.8 49 74-122 18-66 (81)
23 2dmq_A LIM/homeobox protein LH 99.3 1.7E-12 5.7E-17 82.4 4.0 49 74-122 5-53 (80)
24 3a01_A Homeodomain-containing 99.3 2.2E-12 7.5E-17 84.5 4.6 50 73-122 14-63 (93)
25 2l7z_A Homeobox protein HOX-A1 99.3 2.5E-12 8.7E-17 80.5 4.4 49 74-122 5-53 (73)
26 1zq3_P PRD-4, homeotic bicoid 99.3 1.8E-12 6E-17 80.1 3.6 47 76-122 2-48 (68)
27 1jgg_A Segmentation protein EV 99.3 1.6E-12 5.5E-17 78.4 3.3 46 77-122 2-47 (60)
28 2m0c_A Homeobox protein arista 99.3 2.3E-12 7.9E-17 80.6 4.0 50 73-122 6-55 (75)
29 1akh_A Protein (mating-type pr 99.3 1.5E-12 5.1E-17 78.6 2.7 49 74-122 3-51 (61)
30 3rkq_A Homeobox protein NKX-2. 99.3 2.5E-12 8.5E-17 76.6 3.5 47 76-122 2-48 (58)
31 1ftt_A TTF-1 HD, thyroid trans 99.3 2.7E-12 9.1E-17 79.3 3.6 47 76-122 2-48 (68)
32 1ahd_P Antennapedia protein mu 99.3 1.5E-12 5.3E-17 80.5 2.5 47 76-122 2-48 (68)
33 1yz8_P Pituitary homeobox 2; D 99.2 1.1E-12 3.9E-17 80.9 1.1 48 75-122 2-49 (68)
34 1fjl_A Paired protein; DNA-bin 99.2 4E-12 1.4E-16 81.0 3.7 50 73-122 15-64 (81)
35 3nar_A ZHX1, zinc fingers and 99.2 3.5E-12 1.2E-16 83.8 3.3 49 74-122 23-71 (96)
36 2da4_A Hypothetical protein DK 99.2 1.8E-12 6E-17 82.5 1.8 50 73-122 5-58 (80)
37 2k40_A Homeobox expressed in E 99.2 4.7E-12 1.6E-16 77.9 3.6 46 77-122 2-47 (67)
38 1wi3_A DNA-binding protein SAT 99.2 5.3E-12 1.8E-16 78.4 3.5 50 73-122 4-54 (71)
39 1b72_A Protein (homeobox prote 99.2 5.4E-12 1.8E-16 83.0 3.2 49 74-122 32-80 (97)
40 3a02_A Homeobox protein arista 99.2 6.6E-12 2.3E-16 75.6 2.8 44 79-122 2-45 (60)
41 2ecc_A Homeobox and leucine zi 99.2 8.2E-12 2.8E-16 79.2 3.3 45 78-122 5-49 (76)
42 2dn0_A Zinc fingers and homeob 99.2 1.1E-11 3.8E-16 78.1 3.3 47 76-122 8-54 (76)
43 2ly9_A Zinc fingers and homeob 99.2 1.6E-11 5.4E-16 76.8 3.7 47 76-122 6-52 (74)
44 2hi3_A Homeodomain-only protei 99.1 2.2E-11 7.6E-16 76.1 3.6 46 77-122 3-49 (73)
45 1uhs_A HOP, homeodomain only p 99.1 2.1E-11 7.3E-16 75.9 3.5 46 77-122 2-48 (72)
46 1x2n_A Homeobox protein pknox1 99.1 3.3E-11 1.1E-15 75.2 4.2 50 73-122 4-56 (73)
47 3a03_A T-cell leukemia homeobo 99.1 2.4E-11 8.3E-16 72.3 2.8 42 81-122 2-43 (56)
48 2da5_A Zinc fingers and homeob 99.1 4.6E-11 1.6E-15 75.1 3.9 45 78-122 9-53 (75)
49 1du6_A PBX1, homeobox protein 99.1 3.6E-11 1.2E-15 73.2 3.0 47 76-122 3-52 (64)
50 2cuf_A FLJ21616 protein; homeo 99.1 4.5E-11 1.5E-15 78.3 3.3 50 73-122 4-68 (95)
51 1puf_B PRE-B-cell leukemia tra 99.1 7E-11 2.4E-15 73.7 3.6 46 77-122 2-50 (73)
52 2da6_A Hepatocyte nuclear fact 99.1 1.1E-10 3.8E-15 77.7 3.9 50 73-122 3-73 (102)
53 1au7_A Protein PIT-1, GHF-1; c 99.0 1.2E-10 4E-15 81.9 3.7 50 73-122 84-133 (146)
54 1lfb_A Liver transcription fac 99.0 8.4E-11 2.9E-15 77.9 2.7 50 73-122 6-76 (99)
55 2dmn_A Homeobox protein TGIF2L 99.0 2E-10 6.9E-15 73.6 4.1 50 73-122 4-56 (83)
56 3d1n_I POU domain, class 6, tr 99.0 1.6E-10 5.6E-15 81.4 3.8 50 73-122 90-139 (151)
57 1b72_B Protein (PBX1); homeodo 99.0 1.6E-10 5.5E-15 74.3 3.3 46 77-122 2-50 (87)
58 2xsd_C POU domain, class 3, tr 99.0 1.3E-10 4.6E-15 83.1 3.0 50 73-122 96-145 (164)
59 1e3o_C Octamer-binding transcr 99.0 1.5E-10 5.1E-15 82.5 3.2 49 74-122 99-147 (160)
60 1k61_A Mating-type protein alp 99.0 2E-10 7E-15 68.9 3.3 43 80-122 2-47 (60)
61 2d5v_A Hepatocyte nuclear fact 99.0 1.7E-10 5.7E-15 82.3 3.2 50 73-122 94-143 (164)
62 1mnm_C Protein (MAT alpha-2 tr 99.0 2.5E-10 8.4E-15 73.5 3.7 49 74-122 25-76 (87)
63 2ecb_A Zinc fingers and homeob 99.0 2.5E-10 8.6E-15 74.3 3.3 41 82-122 17-57 (89)
64 2cqx_A LAG1 longevity assuranc 98.9 1.3E-10 4.4E-15 72.7 0.9 46 77-122 9-55 (72)
65 3l1p_A POU domain, class 5, tr 98.9 4.2E-10 1.4E-14 79.8 3.5 49 74-122 94-142 (155)
66 2dmp_A Zinc fingers and homeob 98.9 1.1E-09 3.7E-14 71.0 4.5 41 82-122 19-59 (89)
67 1le8_B Mating-type protein alp 98.9 6.7E-10 2.3E-14 71.0 3.3 45 78-122 4-51 (83)
68 3nau_A Zinc fingers and homeob 98.9 4.7E-10 1.6E-14 69.2 2.4 39 84-122 12-50 (66)
69 2e19_A Transcription factor 8; 98.9 9.4E-10 3.2E-14 67.3 3.2 44 79-122 6-49 (64)
70 2l9r_A Homeobox protein NKX-3. 98.8 1.2E-09 4.3E-14 67.8 2.9 42 81-122 9-50 (69)
71 1ic8_A Hepatocyte nuclear fact 98.8 6.6E-10 2.2E-14 81.7 0.6 50 73-122 112-182 (194)
72 1x2m_A LAG1 longevity assuranc 98.7 3.4E-09 1.2E-13 65.0 2.2 38 85-122 9-47 (64)
73 2h8r_A Hepatocyte nuclear fact 98.7 4E-09 1.4E-13 78.8 2.9 44 71-114 137-180 (221)
74 3k2a_A Homeobox protein MEIS2; 98.5 4.7E-08 1.6E-12 60.0 2.9 41 82-122 4-47 (67)
75 1mh3_A Maltose binding-A1 home 98.3 3.1E-07 1.1E-11 71.9 2.5 46 77-122 366-411 (421)
76 2da7_A Zinc finger homeobox pr 97.9 3.9E-06 1.3E-10 52.1 2.4 38 85-122 14-51 (71)
77 2lk2_A Homeobox protein TGIF1; 97.8 9.5E-06 3.2E-10 52.6 2.3 42 81-122 10-54 (89)
78 3dtp_E RLC, myosin regulatory 89.2 2 6.7E-05 29.5 7.5 38 80-117 48-90 (196)
79 2rgt_A Fusion of LIM/homeobox 83.7 0.027 9.4E-07 39.3 -4.7 30 74-103 134-163 (169)
80 2ys9_A Homeobox and leucine zi 34.0 17 0.00057 22.0 1.3 33 89-121 19-51 (70)
81 3q0w_A HTH-type transcriptiona 32.4 16 0.00054 25.2 1.2 39 79-118 40-79 (236)
82 3i5g_B Myosin regulatory light 28.8 1.2E+02 0.0041 19.6 5.2 40 79-118 6-50 (153)
83 2elh_A CG11849-PA, LD40883P; s 26.6 54 0.0018 19.5 2.8 39 77-120 17-55 (87)
84 1hlv_A CENP-B, major centromer 23.3 77 0.0026 19.9 3.3 39 79-120 4-42 (131)
85 2lhi_A Calmodulin, serine/thre 20.8 59 0.002 21.6 2.4 39 80-118 2-45 (176)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=85.69 Aligned_cols=50 Identities=38% Similarity=0.490 Sum_probs=47.3
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.++.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKT 63 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 45678899999999999999999999999999999999999999999986
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.38 E-value=3.7e-13 Score=86.05 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=47.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhh----CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHF----NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~----~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.+|.||.||..|+..||..|+. ++||+..+|.+||..|+|++.||+|
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vkv 67 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKV 67 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccC
Confidence 3467889999999999999999999 9999999999999999999999987
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=6.2e-13 Score=85.19 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=47.2
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 68 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKT 68 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 45678899999999999999999999999999999999999999999986
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.37 E-value=3.6e-13 Score=86.15 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=46.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhh-----CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHF-----NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~-----~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.+|.||.||..|+..|| .|.. ++||+..+|.+||..|+|++.||+|
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkv 67 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccc
Confidence 45678899999999999999 8999 9999999999999999999999987
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=4e-13 Score=83.47 Aligned_cols=50 Identities=30% Similarity=0.504 Sum_probs=46.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+...++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 53 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhH
Confidence 34568899999999999999999999999999999999999999999986
No 6
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5e-13 Score=83.01 Aligned_cols=50 Identities=30% Similarity=0.442 Sum_probs=47.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+...++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 53 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 34578899999999999999999999999999999999999999999986
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.7e-13 Score=82.70 Aligned_cols=49 Identities=31% Similarity=0.381 Sum_probs=46.4
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
...++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV 53 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeeh
Confidence 4568899999999999999999999999999999999999999999986
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=6.6e-13 Score=82.34 Aligned_cols=50 Identities=26% Similarity=0.297 Sum_probs=47.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVV 53 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHH
Confidence 44578899999999999999999999999999999999999999999986
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.34 E-value=5.1e-13 Score=81.38 Aligned_cols=48 Identities=50% Similarity=0.774 Sum_probs=43.9
Q ss_pred CCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 75 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 75 k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKI 49 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 357899999999999999999999999999999999999999999986
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.34 E-value=4.6e-13 Score=81.26 Aligned_cols=48 Identities=31% Similarity=0.424 Sum_probs=41.2
Q ss_pred CCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 75 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 75 k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKT 49 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 457899999999999999999999999999999999999999999986
No 11
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.33 E-value=7.9e-13 Score=83.59 Aligned_cols=50 Identities=32% Similarity=0.460 Sum_probs=47.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 55 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 45568899999999999999999999999999999999999999999986
No 12
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.33 E-value=6.9e-13 Score=84.11 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=47.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~ 63 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 63 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHH
Confidence 45678899999999999999999999999999999999999999999986
No 13
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.33 E-value=1.1e-12 Score=84.97 Aligned_cols=50 Identities=54% Similarity=0.729 Sum_probs=43.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+..+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 74 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 74 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 34578899999999999999999999999999999999999999999986
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.32 E-value=6.2e-13 Score=82.47 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=46.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.+.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 53 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 34578899999999999999999999999999999999999999999986
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=1e-12 Score=83.62 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=46.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+...++.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 53 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 34578899999999999999999999999999999999999999999986
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.32 E-value=7.2e-13 Score=80.18 Aligned_cols=47 Identities=43% Similarity=0.661 Sum_probs=42.1
Q ss_pred CCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 49 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 57899999999999999999999999999999999999999999986
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=9.3e-13 Score=78.78 Aligned_cols=46 Identities=43% Similarity=0.595 Sum_probs=44.2
Q ss_pred CCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 46 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 46 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhh
Confidence 5789999999999999999999999999999999999999999986
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.32 E-value=1.3e-12 Score=82.59 Aligned_cols=50 Identities=46% Similarity=0.640 Sum_probs=46.8
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
....++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 59 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 34567899999999999999999999999999999999999999999986
No 19
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=1.4e-12 Score=82.98 Aligned_cols=50 Identities=30% Similarity=0.323 Sum_probs=47.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.+.++.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV 53 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 35678899999999999999999999999999999999999999999986
No 20
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=1.6e-12 Score=80.69 Aligned_cols=49 Identities=39% Similarity=0.563 Sum_probs=46.0
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
...++.|+.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 53 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhH
Confidence 3467889999999999999999999999999999999999999999986
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.30 E-value=1.4e-12 Score=80.01 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 75 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 75 k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 357899999999999999999999999999999999999999999986
No 22
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.30 E-value=1.4e-12 Score=83.24 Aligned_cols=49 Identities=53% Similarity=0.724 Sum_probs=42.2
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+..++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 66 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKI 66 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3467899999999999999999999999999999999999999999986
No 23
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=82.44 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=46.5
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
...++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQV 53 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 4568899999999999999999999999999999999999999999986
No 24
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.29 E-value=2.2e-12 Score=84.47 Aligned_cols=50 Identities=38% Similarity=0.522 Sum_probs=47.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKT 63 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhccc
Confidence 44578899999999999999999999999999999999999999999986
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.29 E-value=2.5e-12 Score=80.51 Aligned_cols=49 Identities=35% Similarity=0.559 Sum_probs=46.2
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 53 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHH
Confidence 3468899999999999999999999999999999999999999999986
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.28 E-value=1.8e-12 Score=80.14 Aligned_cols=47 Identities=34% Similarity=0.535 Sum_probs=45.1
Q ss_pred CCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 48 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 57899999999999999999999999999999999999999999986
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.28 E-value=1.6e-12 Score=78.36 Aligned_cols=46 Identities=43% Similarity=0.596 Sum_probs=43.7
Q ss_pred CCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 47 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 5789999999999999999999999999999999999999999986
No 28
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=80.64 Aligned_cols=50 Identities=32% Similarity=0.350 Sum_probs=46.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.++.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 55 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 45578899999999999999999999999999999999999999999986
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.27 E-value=1.5e-12 Score=78.61 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=39.2
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+.++.|+.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 4567899999999999999999999999999999999999999999986
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=76.60 Aligned_cols=47 Identities=36% Similarity=0.555 Sum_probs=44.7
Q ss_pred CCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKI 48 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHH
Confidence 46789999999999999999999999999999999999999999986
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.27 E-value=2.7e-12 Score=79.33 Aligned_cols=47 Identities=34% Similarity=0.533 Sum_probs=45.0
Q ss_pred CCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 47899999999999999999999999999999999999999999986
No 32
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.26 E-value=1.5e-12 Score=80.47 Aligned_cols=47 Identities=57% Similarity=0.851 Sum_probs=45.0
Q ss_pred CCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 48 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 48 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhH
Confidence 46889999999999999999999999999999999999999999986
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.24 E-value=1.1e-12 Score=80.94 Aligned_cols=48 Identities=35% Similarity=0.470 Sum_probs=45.8
Q ss_pred CCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 75 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 75 k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 49 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 468899999999999999999999999999999999999999999986
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.24 E-value=4e-12 Score=81.00 Aligned_cols=50 Identities=30% Similarity=0.393 Sum_probs=46.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 64 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 64 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 45678899999999999999999999999999999999999999999986
No 35
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=83.84 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=43.8
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
...++.|+.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 71 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVS 71 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 3456789999999999999999999999999999999999999999986
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-12 Score=82.46 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=47.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhC----CCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFN----KYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~----~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.++.||.||..|+..||..|..+ +||+..+|.+||..|||++.||+|
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~v 58 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRT 58 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhH
Confidence 35678899999999999999999999 999999999999999999999986
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.23 E-value=4.7e-12 Score=77.86 Aligned_cols=46 Identities=28% Similarity=0.326 Sum_probs=44.4
Q ss_pred CCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
++.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQI 47 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 6889999999999999999999999999999999999999999976
No 38
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=5.3e-12 Score=78.38 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=47.2
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhh-CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~-~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+..+|.||.|+.+|+..|+..|+. +.||+...|..||..|||++.+|+|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3467899999999999999999999 9999999999999999999999986
No 39
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=5.4e-12 Score=83.03 Aligned_cols=49 Identities=67% Similarity=0.916 Sum_probs=43.1
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
...++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 80 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 80 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 4567899999999999999999999999999999999999999999986
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.20 E-value=6.6e-12 Score=75.62 Aligned_cols=44 Identities=34% Similarity=0.411 Sum_probs=40.1
Q ss_pred CCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 79 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 79 ~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 45 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 45 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999999999999999999999999976
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.20 E-value=8.2e-12 Score=79.20 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=42.5
Q ss_pred CCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 78 SGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 78 r~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..|+.||..|+.+||..|..++||+..+|.+||..+||++.||+|
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkv 49 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 357789999999999999999999999999999999999999986
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=78.08 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=44.1
Q ss_pred CCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+...|+.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~ 54 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRK 54 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhH
Confidence 34569999999999999999999999999999999999999999986
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=76.80 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=44.8
Q ss_pred CCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.++.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 52 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKK 52 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeee
Confidence 46789999999999999999999999999999999999999999986
No 44
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=2.2e-11 Score=76.11 Aligned_cols=46 Identities=28% Similarity=0.156 Sum_probs=43.5
Q ss_pred CCCCcccCHHHHHHHHHhhhh-CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F~~-~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+.||.||..|+..||..|.. ++||+..+|.+||..|||++.||+|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~ 49 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 567999999999999999995 9999999999999999999999986
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=2.1e-11 Score=75.94 Aligned_cols=46 Identities=30% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCCCcccCHHHHHHHHHhhhh-CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F~~-~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+.||.||..|+..||..|.. ++||+..+|.+||..|||++.||+|
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 457999999999999999996 9999999999999999999999986
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=3.3e-11 Score=75.20 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=46.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~---~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.+.++.|+.|+..|+..||..|.. ++||+..++.+||..+||++.||+|
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 56 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 56 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 3457789999999999999999976 9999999999999999999999976
No 47
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.12 E-value=2.4e-11 Score=72.26 Aligned_cols=42 Identities=36% Similarity=0.577 Sum_probs=39.1
Q ss_pred cccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 81 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 81 t~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
|.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 43 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKT 43 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 689999999999999999999999999999999999999986
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.6e-11 Score=75.10 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=42.4
Q ss_pred CCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 78 SGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 78 r~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.|+.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 356789999999999999999999999999999999999999986
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=3.6e-11 Score=73.17 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCCCCcccCHHHHHHHHHhh---hhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 76 NNSGRTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 76 ~rr~Rt~ft~~Ql~~LE~~F---~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.++.|+.|+..|+..||..| ..++||+..++.+||..|||++.||+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 52 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 52 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 57889999999999999999 899999999999999999999999976
No 50
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.09 E-value=4.5e-11 Score=78.28 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=46.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhC---------------CCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQ---------------LNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~---------------Lte~qVKI 122 (123)
..+.+|.|+.|+..|+..||..|..++||+..+|.+||..|+ |++.||+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~ 68 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHH
Confidence 456788999999999999999999999999999999999999 99999876
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.08 E-value=7e-11 Score=73.70 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=44.1
Q ss_pred CCCCcccCHHHHHHHHHhh---hhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F---~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
++.|+.||..|+..||..| ..++||+..++.+||..+||++.||+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 899999999999999999999999976
No 52
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=77.74 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=46.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHh---------------------CCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVL---------------------QLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L---------------------~Lte~qVKI 122 (123)
..+.||.||.|+..|+..||..|+.++||+..+|++||..| .|++.+|+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~ 73 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYN 73 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceee
Confidence 35678999999999999999999999999999999999999 788888875
No 53
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.03 E-value=1.2e-10 Score=81.95 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=44.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 133 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 133 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchh
Confidence 34668899999999999999999999999999999999999999999986
No 54
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.03 E-value=8.4e-11 Score=77.94 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=41.6
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHH------------------hC---CCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASV------------------LQ---LNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~------------------L~---Lte~qVKI 122 (123)
..+.+|.||.||..|+..||..|..++||+..+|.+||.. || |++.+|+|
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~v 76 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 76 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeee
Confidence 3467889999999999999999999999999999999999 88 99999876
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=73.56 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=45.5
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~---~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.+.++.|+.|+..|+..||..|.. ++||+..+|.+||..+||++.||+|
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 3456789999999999999999887 6999999999999999999999976
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=81.44 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=47.2
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 139 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRV 139 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHH
Confidence 45678899999999999999999999999999999999999999999986
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.01 E-value=1.6e-10 Score=74.26 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=43.4
Q ss_pred CCCCcccCHHHHHHHHHhh---hhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F---~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
||.|+.|+..|+..||..| ..++||+..++.+||..|||++.||+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 899999999999999999999999976
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.00 E-value=1.3e-10 Score=83.15 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=39.3
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 145 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRV 145 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhh
Confidence 35678899999999999999999999999999999999999999999986
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.00 E-value=1.5e-10 Score=82.46 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=43.2
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+.+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 147 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 147 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhH
Confidence 4678899999999999999999999999999999999999999999986
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.00 E-value=2e-10 Score=68.92 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=41.4
Q ss_pred CcccCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 80 RTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 80 Rt~ft~~Ql~~LE~~F~~---~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
|+.||..|+..||..|.. ++||+..++.+||..+||++.||+|
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~ 47 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 689999999999999999 9999999999999999999999975
No 61
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.99 E-value=1.7e-10 Score=82.25 Aligned_cols=50 Identities=26% Similarity=0.206 Sum_probs=43.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+.+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 44678899999999999999999999999999999999999999999986
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=98.99 E-value=2.5e-10 Score=73.55 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~---~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
...++.|+.|+..|+..||..|.. ++||+..+|.+||..+||++.||+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~ 76 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 76 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 345667999999999999999999 9999999999999999999999976
No 63
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.98 E-value=2.5e-10 Score=74.31 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=40.1
Q ss_pred ccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 82 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 82 ~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.||..|+.+||..|..++||+..+|.+||..|||++.||+|
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkv 57 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCee
Confidence 79999999999999999999999999999999999999987
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.94 E-value=1.3e-10 Score=72.74 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCCCcccCHHHHHHHHHhh-hhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F-~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+.|+.++..|+..||..| ..++||+..+|.+||..|||++.||+|
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqv 55 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcch
Confidence 4567788899999999999 999999999999999999999999986
No 65
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.94 E-value=4.2e-10 Score=79.75 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+.+|.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~v 142 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRV 142 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheee
Confidence 4567899999999999999999999999999999999999999999986
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=71.03 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=39.6
Q ss_pred ccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 82 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 82 ~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~v 59 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDS 59 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccH
Confidence 49999999999999999999999999999999999999986
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.91 E-value=6.7e-10 Score=70.99 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=41.6
Q ss_pred CCCcccCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 78 SGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 78 r~Rt~ft~~Ql~~LE~~F~~---~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
+.|+.||..|+..||..|.. ++||+..+|.+||..+||++.||+|
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHccc
Confidence 45667999999999999999 9999999999999999999999976
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=69.19 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 84 TNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 84 t~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
|..|+.+||..|..++||+..+|.+||..|||++.||+|
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkv 50 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 789999999999999999999999999999999999976
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=9.4e-10 Score=67.29 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=40.6
Q ss_pred CCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 79 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 79 ~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+..++..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqv 49 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKK 49 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCc
Confidence 34566799999999999999999999999999999999999986
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-09 Score=67.80 Aligned_cols=42 Identities=36% Similarity=0.615 Sum_probs=39.9
Q ss_pred cccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 81 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 81 t~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..+|..|+.+||..|..++||+..+|.+||..|||++.||+|
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqv 50 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 50 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheee
Confidence 367999999999999999999999999999999999999986
No 71
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.80 E-value=6.6e-10 Score=81.65 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=43.6
Q ss_pred cCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhC---------------------CCCCCccc
Q psy14571 73 SLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQ---------------------LNETQTSF 122 (123)
Q Consensus 73 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~---------------------Lte~qVKI 122 (123)
..+.||.||.|+..|+..||..|..++||+..+|++||..++ |++.+|+|
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~ 182 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 182 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccch
Confidence 456789999999999999999999999999999999999999 99999876
No 72
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.74 E-value=3.4e-09 Score=65.00 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=35.1
Q ss_pred HHHHHHHHHhh-hhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 85 NKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 85 ~~Ql~~LE~~F-~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..|+.+||..| ..++||+..+|.+||..|||+++||+|
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkv 47 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 34799999999 679999999999999999999999987
No 73
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.73 E-value=4e-09 Score=78.79 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=38.0
Q ss_pred cccCCCCCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhC
Q psy14571 71 HQSLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQ 114 (123)
Q Consensus 71 ~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~ 114 (123)
....+.||.|+.|+..|+..||..|..++||+..+|++||..+|
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 34566789999999999999999999999999999999999987
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.52 E-value=4.7e-08 Score=60.02 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=37.8
Q ss_pred ccCHHHHHHHHHhhh---hCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 82 NFTNKQLTELEKEFH---FNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 82 ~ft~~Ql~~LE~~F~---~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.|+..|+..|+..|. .++||+..+|.+||..+||++.||+|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~ 47 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNN 47 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhh
Confidence 799999999999999 99999999999999999999999975
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.26 E-value=3.1e-07 Score=71.89 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
++.++.|+..|+..||+.|+.++||+..+|.+||..+||+++||+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~ 411 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 411 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhH
Confidence 4567889999999999999999999999999999999999999986
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=3.9e-06 Score=52.09 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 85 NKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 85 ~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
.+|+..||..|..+.+|+..++..||..+||+...|+|
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrV 51 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKE 51 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 57899999999999999999999999999999999886
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.78 E-value=9.5e-06 Score=52.55 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=38.6
Q ss_pred cccCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHhCCCCCCccc
Q psy14571 81 TNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQTSF 122 (123)
Q Consensus 81 t~ft~~Ql~~LE~~F~~---~~Yp~~~~R~~LA~~L~Lte~qVKI 122 (123)
..|+..++..|+.-|.. +.||+..+|.+||..+||++.||++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~ 54 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCN 54 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 35889999999999987 8999999999999999999999975
No 78
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=89.15 E-value=2 Score=29.53 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=27.6
Q ss_pred CcccCHHHHHHHHHhhhh-----CCCCCHHHHHHHHHHhCCCC
Q psy14571 80 RTNFTNKQLTELEKEFHF-----NKYLTRARRIEIASVLQLNE 117 (123)
Q Consensus 80 Rt~ft~~Ql~~LE~~F~~-----~~Yp~~~~R~~LA~~L~Lte 117 (123)
...++..|+..|...|.. +-+++..+-..+...+|+..
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~ 90 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLC 90 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCC
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCC
Confidence 345788888889888875 34788887777777776544
No 79
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=83.71 E-value=0.027 Score=39.26 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=21.5
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhhCCCCCH
Q psy14571 74 LLNNSGRTNFTNKQLTELEKEFHFNKYLTR 103 (123)
Q Consensus 74 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~ 103 (123)
...+|.||.|+..|+..|+..|+.+.|++.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456789999999999999999999999864
No 80
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.03 E-value=17 Score=22.01 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCcc
Q psy14571 89 TELEKEFHFNKYLTRARRIEIASVLQLNETQTS 121 (123)
Q Consensus 89 ~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qVK 121 (123)
+.|++.|...+.+....-..|+.+.+|+..||+
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 569999999999999999999999999988875
No 81
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=32.40 E-value=16 Score=25.23 Aligned_cols=39 Identities=8% Similarity=-0.048 Sum_probs=22.2
Q ss_pred CCcccCHHH-HHHHHHhhhhCCCCCHHHHHHHHHHhCCCCC
Q psy14571 79 GRTNFTNKQ-LTELEKEFHFNKYLTRARRIEIASVLQLNET 118 (123)
Q Consensus 79 ~Rt~ft~~Q-l~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~ 118 (123)
.|..-+..+ +......|...-|-... -.+||...|++..
T Consensus 40 ~~~~~~r~~Il~aA~~lf~e~G~~~~t-~~~IA~~aGvs~~ 79 (236)
T 3q0w_A 40 PSGDDRELAILATAENLLEDRPLADIS-VDDLAKGAGISRP 79 (236)
T ss_dssp --CHHHHHHHHHHHHHHHHHSCGGGCC-HHHHHHHHTCCHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCcccCC-HHHHHHHhCCcHH
Confidence 334444444 33666668877764333 3378888888753
No 82
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.81 E-value=1.2e+02 Score=19.57 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCcccCHHHHHHHHHhhhh-----CCCCCHHHHHHHHHHhCCCCC
Q psy14571 79 GRTNFTNKQLTELEKEFHF-----NKYLTRARRIEIASVLQLNET 118 (123)
Q Consensus 79 ~Rt~ft~~Ql~~LE~~F~~-----~~Yp~~~~R~~LA~~L~Lte~ 118 (123)
.|..+|..|+.+|...|.. +-+++..+-..+...||+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999874 458888887777778887654
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=26.61 E-value=54 Score=19.51 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=24.7
Q ss_pred CCCCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCc
Q psy14571 77 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120 (123)
Q Consensus 77 rr~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qV 120 (123)
++.+..|+..+....-..+... + ...++|..+|++...|
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl 55 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTL 55 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHH
Confidence 3456678888765554555433 1 2457899999976543
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=23.27 E-value=77 Score=19.86 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=26.9
Q ss_pred CCcccCHHHHHHHHHhhhhCCCCCHHHHHHHHHHhCCCCCCc
Q psy14571 79 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120 (123)
Q Consensus 79 ~Rt~ft~~Ql~~LE~~F~~~~Yp~~~~R~~LA~~L~Lte~qV 120 (123)
.|..||.++-..+-..+..+.... ..++|..+|++...|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl 42 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTL 42 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHH
Confidence 577899999887766664444443 236888999876543
No 85
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.80 E-value=59 Score=21.64 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=30.1
Q ss_pred CcccCHHHHHHHHHhhhh-----CCCCCHHHHHHHHHHhCCCCC
Q psy14571 80 RTNFTNKQLTELEKEFHF-----NKYLTRARRIEIASVLQLNET 118 (123)
Q Consensus 80 Rt~ft~~Ql~~LE~~F~~-----~~Yp~~~~R~~LA~~L~Lte~ 118 (123)
++.+|..|+.+|...|.. +-+++..+-..+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 467899999999999864 347888887777777876653
Done!