RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14571
(123 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 48.6 bits (116), Expect = 1e-09
Identities = 26/40 (65%), Positives = 28/40 (70%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
R +T Q ELEKEFHFN+YLTR RRIEIA L L E Q
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQ 40
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 46.4 bits (110), Expect = 7e-09
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
R FT+ Q L F NK ++ +I I+ L L +
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 41
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 45.9 bits (109), Expect = 1e-08
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT+FT +Q+ LEKEF Y R +A+ + L E +
Sbjct: 5 RTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEAR 44
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 44.1 bits (104), Expect = 6e-08
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT F+++QL L++EF+ N+YLT RR +++S L LNE Q
Sbjct: 3 RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQ 42
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 44.1 bits (104), Expect = 6e-08
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 79 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
G+ F+N Q ELEK+F KYL+ R +A +LQL+E Q
Sbjct: 3 GQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ 43
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 44.3 bits (104), Expect = 9e-08
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
R + + L +E F+ N+Y A+R EIA+ +
Sbjct: 4 RFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQK 43
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 42.1 bits (99), Expect = 5e-07
Identities = 23/40 (57%), Positives = 26/40 (65%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
R +T Q ELEKEF FN YLTR RR E+A +L L E Q
Sbjct: 17 RCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ 56
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 40.6 bits (95), Expect = 1e-06
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
R ++ QL ELE+E+ NK++T+ +R +I++ L+E Q
Sbjct: 5 RIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQ 44
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 40.3 bits (94), Expect = 1e-06
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
+++ + + LE+ F + L + E+A + Q
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQ 40
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 39.9 bits (93), Expect = 2e-06
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT FT QL LEKEF+ Y++R RR E+A+ L L E+
Sbjct: 3 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPEST 42
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 39.5 bits (92), Expect = 4e-06
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT + LE+ F + + + +A L L +
Sbjct: 3 RTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVV 43
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 38.8 bits (90), Expect = 6e-06
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT+ LEK F N+ T IA L + +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVI 42
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 38.0 bits (88), Expect = 1e-05
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT FT QL LE++F +YL+ A R E +S L L ETQ
Sbjct: 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQ 43
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 38.0 bits (88), Expect = 1e-05
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT+FT++QL +LE F N+Y + R EIA L E +
Sbjct: 5 RTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARV 45
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 38.0 bits (88), Expect = 2e-05
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 79 GRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQT 120
G T Q+ LE F+ NK+ IA+ L E QT
Sbjct: 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQT 46
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 36.7 bits (85), Expect = 4e-05
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT KQL L + N + ++ + L+
Sbjct: 7 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRV 46
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 35.9 bits (83), Expect = 6e-05
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 84 TNKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQ 119
T + LEK F K+ R ++ L +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRS 37
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 36.0 bits (83), Expect = 7e-05
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT F+ QL ELE+ F +Y R E+A L E +
Sbjct: 6 RTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEAR 45
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 36.5 bits (84), Expect = 8e-05
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 63 PPSAALSQHQSLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
P +A +S+ + RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQ
Sbjct: 14 PKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 70
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 35.4 bits (81), Expect = 2e-04
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
RT+ N+ LE F + + IA+ L L +
Sbjct: 12 RTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVV 52
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 34.7 bits (80), Expect = 2e-04
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 80 RTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQ 119
R + + Y T + +IA+ L Q
Sbjct: 6 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQ 48
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 34.9 bits (80), Expect = 2e-04
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
R F+ Q+ ELE+ F KYL+ R +AS++ L TQ
Sbjct: 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQ 45
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 34.9 bits (80), Expect = 3e-04
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 119
RT FT+ Q+ ELE+ F +YLT R ++++ L L Q
Sbjct: 5 RTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQ 44
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 33.9 bits (77), Expect = 6e-04
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
R FT Q ELE+ F +YL+ R +AS+++L TQ
Sbjct: 13 RVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 33.2 bits (76), Expect = 8e-04
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 80 RTNFTNKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQ 119
+ LEK F KY R ++ L + +
Sbjct: 5 SPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRK 45
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 33.2 bits (76), Expect = 0.001
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 80 RTNFTNKQLTELEKEFHFNK---YLTRARRIEIASVLQLNETQ 119
FT + + LE F N YL + L+ Q
Sbjct: 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQ 44
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 32.1 bits (72), Expect = 0.003
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
R + L + + K ++ R + E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQ 41
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 30.7 bits (69), Expect = 0.008
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 80 RTNFTNKQLTELEK---EFHFNKYLTRARRIEIASVLQLNETQ 119
R NF + L + N Y + + E+A + +Q
Sbjct: 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQ 47
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 30.8 bits (69), Expect = 0.008
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 80 RTNFTNKQLTELEKEFH-FNKYLTRARRIEIASVLQLNETQT 120
RT + + L L+ H Y + +++ L L +
Sbjct: 11 RTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI 52
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.8 bits (61), Expect = 0.14
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 80 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
T +QL L+ F + LT + + +L +
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREI 48
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.4 bits (60), Expect = 0.16
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 76 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQT 120
+ S T +QL L+ F ++ R ++ + L +
Sbjct: 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEI 47
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 27.4 bits (61), Expect = 0.46
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 3 KRKKEKKKKKKKKKKKKKKKKKKKRITKVQ 32
+ +KE+KK+ ++KK+ + +++K +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYK 131
Score = 24.7 bits (54), Expect = 3.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 1 MRKRKKEKKKKKKKKKKKKKKKKKKKR 27
M + +K++KK+ ++KK+ + +R
Sbjct: 97 MFDYFQLQKEQKKQLTSQEKKQIRLER 123
Score = 23.9 bits (52), Expect = 6.5
Identities = 5/25 (20%), Positives = 18/25 (72%)
Query: 2 RKRKKEKKKKKKKKKKKKKKKKKKK 26
+++KK+ ++KK+ + +++K ++
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEED 129
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 27.0 bits (60), Expect = 0.64
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 3 KRKKEKKKKKKKKKKKKKKKKKKKRITKVQ 32
K + E +K+ K++K K K++ +K + +
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYG 139
Score = 23.9 bits (52), Expect = 6.1
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 2 RKRKKEKKKKKKKKKKKKKKKKKKK 26
+ +K+ K++K K K++ +K K+
Sbjct: 113 TEARKQMSKEEKLKIKEENEKLLKE 137
Score = 23.9 bits (52), Expect = 6.3
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1 MRKRKKEKKKKKKKKKKKKKKKKKKKR 27
M + K + + +K+ K++K K K++
Sbjct: 105 MSQYFKAQTEARKQMSKEEKLKIKEEN 131
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.5 bits (58), Expect = 1.1
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 3 KRKKEKKKKKKKKKKKKKKKKKKKRI 28
+K+ + ++K ++ K K+K +K+R+
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 26.1 bits (57), Expect = 1.3
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 2 RKRKKEKKKKKKKKKKKKKKKKKK 25
+KR++ ++K ++ K K+K +K++
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKER 331
Score = 25.3 bits (55), Expect = 2.2
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 2 RKRKKEKKKKKKKKKKKKKKKKKKKRITKVQI 33
+ KE +K+++ ++K ++ K K++ K ++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.1 bits (57), Expect = 1.1
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 3 KRKKEKKKKKKKKKKKKKKKKKKKRITKVQIPSE 36
K + +K++ K K+ R + P E
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIE 241
Score = 24.6 bits (53), Expect = 3.9
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 2 RKRKKEKKKKKKKKKKKKKKKKKKKRITKV 31
+ + +K++ K K+ + I K+
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKI 237
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 25.5 bits (55), Expect = 1.5
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 5 KKEKKKKKKKKKKKKKKKKKKK 26
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 25.5 bits (55), Expect = 1.6
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 1 MRKRKKEKKKKKKKKKKKKKKKK 23
+ K K+E + + + + +K+
Sbjct: 159 LPKPKREAFLEANRAELVRFQKE 181
Score = 24.3 bits (52), Expect = 4.5
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 7 EKKKKKKKKKKKKKKKKKKKRITK 30
E+ K K++ + + + R K
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQK 180
Score = 23.9 bits (51), Expect = 6.7
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 4 RKKEKKKKKKKKKKKKKKKKKKKR 27
R + K++ + + + + +K
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKE 181
Score = 23.6 bits (50), Expect = 8.3
Identities = 3/24 (12%), Positives = 12/24 (50%)
Query: 2 RKRKKEKKKKKKKKKKKKKKKKKK 25
R K +++ + + + + +K+
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKE 181
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 25.2 bits (55), Expect = 1.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 3 KRKKEKKKKKKKKKKKKKKKKKKKRITKVQI 33
+ KK K K K + ++KK ++ T++ I
Sbjct: 66 RGKKILVSKFKAKVQYRRKKGHRQPYTELLI 96
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 24.7 bits (54), Expect = 1.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 3 KRKKEKKKKKKKKKKKKK 20
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 3.2
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 10 KKKKKKKKKKKKKKKKKRITKV 31
+K KKK +
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQ 23
Score = 23.2 bits (50), Expect = 6.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 8 KKKKKKKKKKKKKKKKKK 25
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.2 bits (50), Expect = 6.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 9 KKKKKKKKKKKKKKKKKK 26
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 24.4 bits (53), Expect = 2.9
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 3 KRKKEKKKKKKKKKKKKKKKKKKKRITKVQI 33
+ KK +K K + +++ ++ T ++I
Sbjct: 61 RGKKIYIRKYKSGVQYRRRTGHRQNFTAIKI 91
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 24.1 bits (52), Expect = 4.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 6 KEKKKKKKKKKKKKKKKKKKKR 27
K K K K +++ K + + +KR
Sbjct: 2 KNKGKGGKNRRRGKNENESEKR 23
Score = 23.3 bits (50), Expect = 7.5
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 5 KKEKKKKKKKKKKKKKKKKKKKRITK 30
K + K K +++ K + + +K+ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVF 27
Score = 23.3 bits (50), Expect = 7.6
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 4 RKKEKKKKKKKKKKKKKKKKKKKRITK 30
+ K K K +++ K + + +K++ + K
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFK 28
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 23.6 bits (51), Expect = 5.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 3 KRKKEKKKKKKKKKKKKKKKKKKKRITKVQI 33
+ +K K K +++K +K++ ++ T V+I
Sbjct: 68 RGEKVKIVKFRRRKHYRKQQGHRQWFTDVKI 98
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 23.6 bits (50), Expect = 6.9
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 5 KKEKKKKKKKKKKKKKKKKKKKRITKVQIPSEL 37
+E+ +K+ + ++K + V++PS L
Sbjct: 4 HEERMNNYRKRVGRLFMEQKAAQPDAVKLPSGL 36
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 23.1 bits (50), Expect = 9.4
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 8 KKKKKKKKKKKKKKKKKKKRIT 29
+K K+ +K+K+++ KKK +
Sbjct: 143 RKLKQYLSEKRKEQEAKKKLLA 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.123 0.331
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,184
Number of extensions: 19954
Number of successful extensions: 792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 234
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)