BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14578
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VKV8|U0468_DROME UPF0468 protein CG5343 OS=Drosophila melanogaster GN=CG5343 PE=1
SV=1
Length = 199
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL LWD V NG+I+RITD D+ SL LEI+ T V T+IT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQLWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKN+ K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L+EGWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++P E
Sbjct: 121 MPMRLDEGWNQIQFNLSDFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPPE 180
Query: 181 YKLF 184
+KLF
Sbjct: 181 FKLF 184
>sp|Q8BTU1|CP080_MOUSE UPF0468 protein C16orf80 homolog OS=Mus musculus GN=Gtl3 PE=2 SV=1
Length = 193
Score = 234 bits (596), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL +WD V NG+I+RITD D+ SL LEI T V TYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L++GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++PAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q6B857|CP080_BOVIN UPF0468 protein C16orf80 homolog OS=Bos taurus PE=2 SV=1
Length = 193
Score = 234 bits (596), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL +WD V NG+I+RITD D+ SL LEI T V TYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L++GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++PAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q6GL74|CP080_XENTR UPF0468 protein C16orf80 homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 193
Score = 233 bits (595), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL +WD V NG+I+RITD D+ SL LE+ T V TYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEVEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L++GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++PAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q6GPY6|CP080_XENLA UPF0468 protein C16orf80 homolog OS=Xenopus laevis PE=2 SV=1
Length = 193
Score = 233 bits (595), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL +WD V NG+I+RITD D+ SL LE+ T V TYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEVEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L++GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++PAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q5ZHP3|CP080_CHICK UPF0468 protein C16orf80 homolog OS=Gallus gallus GN=RCJMB04_34o2
PE=2 SV=1
Length = 193
Score = 233 bits (595), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+S+ YSIGSKPL +WD V NG+I+RITD D+ SL LEI T V TYIT
Sbjct: 1 MFKNTFQSGFLSVLYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L++GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++PAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q6PBJ2|CP080_DANRE UPF0468 protein C16orf80 homolog OS=Danio rerio GN=zgc:73380 PE=2
SV=1
Length = 192
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL +WD V NG+I+RITD D+ SL LE+ T V TYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEVEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L++GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++PAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q9Y6A4|CP080_HUMAN UPF0468 protein C16orf80 OS=Homo sapiens GN=C16orf80 PE=1 SV=1
Length = 193
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 143/184 (77%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL +WD V NG+I+RITD D+ SL LEI T V TYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L++GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F+D+LY ++PAE
Sbjct: 121 MPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q61JK7|CP080_CAEBR UPF0468 protein C16orf80 homolog OS=Caenorhabditis briggsae
GN=CBG09753 PE=3 SV=1
Length = 203
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 141/184 (76%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MF N +Q +S+ YSIGSKPL +WDT + NG+++RITD ++ SL LEI+ + +I+
Sbjct: 1 MFHNTFQSGLLSVLYSIGSKPLQIWDTQIKNGHVKRITDEEIQSLVLEIMGNNISTAFIS 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+ +++KN+NK+FSFEVQIID K KRR R SNY S +++ PFI T
Sbjct: 61 CPVDPEKTLGIKLPFFVMVVKNMNKYFSFEVQIIDDKKIKRRFRASNYQSATRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ ++EGWN+++ +L DFV ++Y T Y+ETL+I++HANCR+RR++FAD+LY ++PAE
Sbjct: 121 MPMRMDEGWNQIQFNLSDFVKRAYGTNYVETLRIQIHANCRIRRVYFADRLYTEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q86D25|CP080_CAEEL UPF0468 protein C16orf80 homolog OS=Caenorhabditis elegans
GN=C54C6.6 PE=3 SV=1
Length = 203
Score = 227 bits (578), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 141/184 (76%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MF N +Q +S+ YSIGSKPL +WDT + NG+++RITD ++ SL LEI+ + +I+
Sbjct: 1 MFHNTFQSGLLSVLYSIGSKPLQIWDTQIKNGHVKRITDEEIQSLVLEIMGNNISTAFIS 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+ +++KN+NK+FSFEVQIID K KRR R SNY S +++ PFI T
Sbjct: 61 CPVDPDKTLGIKLPFFVMVVKNMNKYFSFEVQIIDDKKIKRRFRASNYQSATRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ ++EGWN+++ +L DFV ++Y T Y+ETL+I++HANCR+RR++FAD+LY ++PAE
Sbjct: 121 MPMRMDEGWNQIQFNLSDFVKRAYGTNYVETLRIQIHANCRIRRVYFADRLYTEDELPAE 180
Query: 181 YKLF 184
+KL+
Sbjct: 181 FKLY 184
>sp|Q499T7|CP080_RAT UPF0468 protein C16orf80 homolog OS=Rattus norvegicus GN=Gtl3 PE=2
SV=1
Length = 164
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 108/144 (75%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MFKN +Q F+SI YSIGSKPL +WD V NG+I+RITD D+ SL LEI T V TYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP K+LGIKLP+L +IIKNL K+F+FEVQ++D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSY 144
P+ L++GWN+++ +L DF ++Y
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAY 144
>sp|Q4V7B1|CC067_RAT Uncharacterized protein C3orf67 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 658
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 12/201 (5%)
Query: 1 MFKNAYQG-RFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYI 59
MFKN YQG F+ IF + G P + W I + D ++ S ++ + I
Sbjct: 1 MFKNEYQGGAFVEIFSAQGKNPGAKWKILGSPSVIWKEFDKEVKSFVF-VLEGSSQTNRI 59
Query: 60 TCPNYRFKSLGIKLPYLCL-IIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFI 118
P + LG+ +L L I L + FS E+ I D N KRR+ S H P
Sbjct: 60 QLPKENKQILGLIQRFLVLQIYVPLGQDFSTELLITDLGNIKRRLYLSTVHKEVSSTPLH 119
Query: 119 VTFPICL--NEGWNEVRIDLQDFVYKSYKTLYLETLQ-IKMHANCRLRRIFF----ADKL 171
P+ + + W + IDL F + +K ++L I + ANC+LR+IF +
Sbjct: 120 AKIPLFMIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKFKPRET 179
Query: 172 YDSKDIPAEYKLFRKEDQLAT 192
D D PA+ + + QLAT
Sbjct: 180 ADRDDEPAD--IIPRSCQLAT 198
>sp|Q6P2K3|CC067_MOUSE Uncharacterized protein C3orf67 homolog OS=Mus musculus PE=2 SV=2
Length = 674
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 12/201 (5%)
Query: 1 MFKNAYQG-RFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYI 59
MFKN YQG F+ IF + G P + W I + D ++ S ++ + I
Sbjct: 1 MFKNEYQGGAFVEIFSAQGKNPGAKWKILGSPSVIWKEFDKEVKSFVF-VLEGSSQTNRI 59
Query: 60 TCPNYRFKSLGIKLPYLCL-IIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFI 118
P + LG+ +L L I L + FS E+ I D N KRR+ S H P
Sbjct: 60 QLPKENKQILGLIQRFLVLQIYIPLGQDFSTELLITDLGNIKRRLYLSTVHKEVSSTPLH 119
Query: 119 VTFPICL--NEGWNEVRIDLQDFVYKSYKTLYLETLQ-IKMHANCRLRRIFF----ADKL 171
P+ + + W + IDL F + +K ++L I + ANC+LR+IF +
Sbjct: 120 AKIPLFMIQRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPQET 179
Query: 172 YDSKDIPAEYKLFRKEDQLAT 192
D D P + + + QLAT
Sbjct: 180 ADKDDEPTD--IIPRSCQLAT 198
>sp|Q6ZPG2|WDR90_MOUSE WD repeat-containing protein 90 OS=Mus musculus GN=Wdr90 PE=1 SV=2
Length = 1874
Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 23/214 (10%)
Query: 5 AYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYITCPNY 64
A+Q F+++F + W G + +TD L S I + + YI P
Sbjct: 62 AWQHPFLNVFRHF---RVDEWKRSSKEGDVAVVTDKVLKSAVYRIRGSVSASNYIQLPRT 118
Query: 65 RFKSLGIKLPYLCLIIKNL-NKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPI 123
+SLG+ YL ++ + + KHF + + R+ FSN K + + FP
Sbjct: 119 STQSLGLTGRYLYVLFRPVPTKHFVIHLDVSTEDGQVIRVSFSNLFKEFKSSTTWLQFPF 178
Query: 124 CLNEG---------------WNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFA 168
W +++DL+D + Y I++ A+ +R ++ +
Sbjct: 179 VFETKTPRRDLAGVALPRARWTCLQLDLRDILMFYLGRHYSHLKSIRLCASLLVRNLYTS 238
Query: 169 DKLYDSKDIPAEYKLFRKEDQLATSKIMDEFPYP 202
D +D PA + +L+ + + E +P
Sbjct: 239 DLCFD----PAVTVTEARRAKLSVNPMPREMAFP 268
>sp|Q96KV7|WDR90_HUMAN WD repeat-containing protein 90 OS=Homo sapiens GN=WDR90 PE=2 SV=2
Length = 1748
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 5 AYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYITCPNY 64
A+Q F+++F + W G + +TD L I + YI P
Sbjct: 4 AWQHPFLNVFRHF---RVDEWKRSAKQGDVAVVTDKTLKGAVYRIRGSVSAANYIQLPKS 60
Query: 65 RFKSLGIKLPYLCLIIKNL-NKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPI 123
+SLG+ YL ++ + L +KHF + + N R+ FSN K + FP+
Sbjct: 61 STQSLGLTGRYLYVLFRPLPSKHFVIHLDVSSKDNQVIRVSFSNLFKEFKSTATWLQFPL 120
Query: 124 CLNEGWNEVRIDLQDFV 140
L E R +D V
Sbjct: 121 VL-----EARTPQRDLV 132
>sp|A0JP70|WDR90_XENTR WD repeat-containing protein 90 OS=Xenopus tropicalis GN=wdr90 PE=2
SV=1
Length = 1848
Score = 38.9 bits (89), Expect = 0.041, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
Query: 6 YQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYITCPNYR 65
+Q F+++F + L W G + + D L I + YI P
Sbjct: 5 WQHPFVNVFKHL---RLEEWKKSSKEGDVTSVMDKTLKCTVYRIRGSIPAGNYIQLPKTS 61
Query: 66 FKSLGIKLPYLCLIIKNL-NKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFP-I 123
+SLG+ YL ++ K L KHF + + RI FSN K + FP +
Sbjct: 62 SQSLGLTGRYLYILFKPLPGKHFVVHIDVSAEDGQTVRISFSNLFKEFKSTATWLQFPFV 121
Query: 124 C 124
C
Sbjct: 122 C 122
>sp|Q6YTQ4|Y8335_ORYSJ Putative B3 domain-containing protein Os08g0333500 OS=Oryza sativa
subsp. japonica GN=Os08g0333500 PE=3 SV=1
Length = 421
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 131 EVRIDLQDFVYKSYKTLYLE-TLQIKMHANCRLRRIFFADKLYDSKDIPAEYKLFRKEDQ 189
+V D F S+ + + T+Q + C AD Y + + R+ D+
Sbjct: 186 DVLTDTCRFTLPSFLMAFFQNTVQTQTLTTC-------ADSPYPYEHLRKTEPACREIDE 238
Query: 190 LATSKIMDEFPYPPSYLGENEDMNE--DEMGQGDFFNENLMPKYSADFLEMPAGGED 244
+ T + PYP YL + E DE+ G + N++P Y++ LE +GGED
Sbjct: 239 V-TLTMCAHSPYPYEYLRKTELACREIDEVTTGASLSTNILPPYTSSPLEAISGGED 294
>sp|Q81L36|RNH3_BACAN Ribonuclease HIII OS=Bacillus anthracis GN=rnhC PE=3 SV=1
Length = 311
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
A ++ + ++A K +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 ARWQTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|C3L8T2|RNH3_BACAC Ribonuclease HIII OS=Bacillus anthracis (strain CDC 684 / NRRL
3495) GN=rnhC PE=3 SV=1
Length = 311
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
A ++ + ++A K +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 ARWQTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|C3PAE4|RNH3_BACAA Ribonuclease HIII OS=Bacillus anthracis (strain A0248) GN=rnhC PE=3
SV=1
Length = 311
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
A ++ + ++A K +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 ARWQTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|Q6HCX2|RNH3_BACHK Ribonuclease HIII OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=rnhC PE=3 SV=1
Length = 311
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
A ++ + + A K +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 ARWQTVSQTPKTAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|Q72ZI6|RNH3_BACC1 Ribonuclease HIII OS=Bacillus cereus (strain ATCC 10987) GN=rnhC
PE=3 SV=1
Length = 311
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
A ++ + + A K +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 ARWQTVSQTPKTAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis (strain RS)
GN=DRS1 PE=3 SV=1
Length = 840
Score = 33.1 bits (74), Expect = 2.0, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 185 RKEDQLATSKIMDEFPYPPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLEMP-AGGE 243
+K + A S + D F G NED NED N MP + D L P A G
Sbjct: 181 KKTREAAKSNVDDSFEGLSDDDGHNEDENED----------NEMPNFDDDELLAPDAFGM 230
Query: 244 DGGNENQENPEPDAAGGDDNEDQGD 268
E+ E + +A G D+E D
Sbjct: 231 GAEGESDEQGKANADKGSDDESMPD 255
>sp|Q633N8|RNH3_BACCZ Ribonuclease HIII OS=Bacillus cereus (strain ZK / E33L) GN=rnhC
PE=3 SV=1
Length = 311
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
A ++ + + A K +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 ARWQTGSQTPKTAVKKAVDSHRYTPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|O68006|BACA_BACLI Bacitracin synthase 1 OS=Bacillus licheniformis GN=bacA PE=3 SV=1
Length = 5255
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 200 PYPPSYLGENEDMNEDEMGQ--GDFFNENLMPKYSADFLEMPAGGEDGGNENQENPEPDA 257
PY +Y+ N +++ DE+ G+ E ++P Y ++P ++G + + PEPD
Sbjct: 471 PYICAYITANREISLDELKGFLGEKLPEYMIPAYFVKLDKLPLT-KNGKVDRKALPEPDR 529
Query: 258 AGGDDNE 264
G +NE
Sbjct: 530 TAGAENE 536
>sp|C1ETZ4|RNH3_BACC3 Ribonuclease HIII OS=Bacillus cereus (strain 03BB102) GN=rnhC PE=3
SV=1
Length = 311
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
A ++ + + A K +D + PP+ +G + DE+G GDFF + D +
Sbjct: 64 ARWQTVSQTPKTAVKKSVDSHRFAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|O68008|BACC_BACLI Bacitracin synthase 3 OS=Bacillus licheniformis GN=bacC PE=3 SV=1
Length = 6359
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 200 PYPPSYLGENEDMNEDEMGQ--GDFFNENLMPKYSADFLEMPAGGEDGGNENQENPEPDA 257
PY +Y+ N +++ DE+ G+ E ++P Y ++P ++G + + PEPD
Sbjct: 893 PYICAYITANREISLDELKGFLGEKLPEYMIPAYFVKMDKLPLT-KNGKVDRKALPEPDR 951
Query: 258 AGGDDNE 264
G +NE
Sbjct: 952 TAGAENE 958
>sp|Q817J0|RNH3_BACCR Ribonuclease HIII OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=rnhC PE=3 SV=1
Length = 311
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
+ ++ + + A K +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 SRWQTVSQTPKTAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MPAGGEDG 245
+P E G
Sbjct: 124 IPLLKELG 131
>sp|B7HRJ7|RNH3_BACC7 Ribonuclease HIII OS=Bacillus cereus (strain AH187) GN=rnhC PE=3
SV=1
Length = 311
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 179 AEYKLFRKEDQLATSKIMDEFPY-PPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLE 237
+ ++ + + A + +D Y PP+ +G + DE+G GDFF + D +
Sbjct: 64 SRWQTVSQTPKTAVKRSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQ 123
Query: 238 MP----AGGEDGGNENQEN 252
+P G +D N N E
Sbjct: 124 IPLLKELGVKDSKNLNDEQ 142
>sp|Q8INM3|SLE_DROME Protein slender lobes OS=Drosophila melanogaster GN=sle PE=1 SV=1
Length = 1420
Score = 31.2 bits (69), Expect = 8.4, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 208 ENEDMNEDEMGQGDFFNENLMPKYSADFLEMPAGGEDGGNENQENPEPDAAGGD------ 261
E ED +D M GD + +L + + E+P GE G+++ E P+ + GD
Sbjct: 643 EAEDAGKDYM-SGDSMDSSLRREMEEN--EIPIDGESVGSKDTEESTPEESDGDDSFIVS 699
Query: 262 DNEDQGD 268
DNED+ D
Sbjct: 700 DNEDEED 706
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,889,937
Number of Sequences: 539616
Number of extensions: 5000963
Number of successful extensions: 11872
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 11657
Number of HSP's gapped (non-prelim): 211
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)