Query psy14578
Match_columns 270
No_of_seqs 116 out of 197
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 23:24:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05018 DUF667: Protein of un 100.0 2E-73 4.3E-78 501.1 20.5 189 1-189 1-189 (190)
2 KOG3213|consensus 100.0 1.6E-71 3.5E-76 492.1 16.9 189 1-189 1-189 (238)
3 cd08159 APC10-like APC10-like 43.5 89 0.0019 26.4 6.3 82 74-165 37-126 (129)
4 KOG1461|consensus 40.3 28 0.0006 36.9 3.3 27 153-183 373-399 (673)
5 cd08366 APC10 APC10 subunit of 26.9 3.9E+02 0.0085 22.6 7.7 117 22-165 6-135 (139)
6 cd08666 APC10-HECTD3 APC10-lik 25.1 3.8E+02 0.0082 22.9 7.3 81 74-165 42-131 (134)
7 COG4552 Eis Predicted acetyltr 20.1 1.6E+02 0.0035 29.4 4.5 75 86-171 303-383 (389)
8 PF10807 DUF2541: Protein of u 19.8 5.8E+02 0.012 22.0 8.6 83 59-159 32-118 (134)
9 cd08667 APC10-ZZEF1 APC10/DOC1 19.8 4.7E+02 0.01 22.2 6.8 71 85-165 50-127 (131)
10 PF08770 SoxZ: Sulphur oxidati 19.5 2.7E+02 0.0059 22.2 5.0 30 72-102 66-95 (100)
No 1
>PF05018 DUF667: Protein of unknown function (DUF667); InterPro: IPR007714 This family of proteins are highly conserved in eukaryotes. Some proteins in the family are annotated as transcription factors. However, there is currently no support for this in the literature.
Probab=100.00 E-value=2e-73 Score=501.08 Aligned_cols=189 Identities=50% Similarity=0.948 Sum_probs=186.5
Q ss_pred CCcccccCCceEEEeccCCCccccccccccCCcEEEEeccCCcceEEEEeeCCccceeEEccCCCCcccceeccEEEEEE
Q psy14578 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYITCPNYRFKSLGIKLPYLCLII 80 (270)
Q Consensus 1 MF~n~~Q~gfvsIf~S~Gs~PL~~Wk~~~k~G~Vkrv~DkdIks~VleI~G~~~~ttyI~~P~d~k~sLGL~~pfLvLqv 80 (270)
||+|+||+|||+||+|+|++||++|++++++|+|+|++|++|||+|+||+|.++++|||+||++++++|||++|||||++
T Consensus 1 Mf~n~~Q~gf~~i~~s~g~~pl~~W~~~~~~G~V~rv~D~~iks~V~ei~G~~~~~t~I~~P~~~~~sLGl~~pfL~li~ 80 (190)
T PF05018_consen 1 MFKNTYQGGFVSIFYSQGSKPLQIWKKHVKNGHVKRVFDKDIKSYVLEIQGSNSATTYITCPKDPKQSLGLKQPFLVLIF 80 (190)
T ss_pred CccccccCCEEEEEEcCCCCcHHHhhhhccCCeEEEEeccccceEEEEEeccccccCeEECCCCcccccceeecEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCceEEEEEEEeCCCCEEEEEEeeeeeeeeecccEEEecccCCCCeeEEEEcHHHHHHHHhCcceeEEEeEEEeeee
Q psy14578 81 KNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANC 160 (270)
Q Consensus 81 k~l~k~FsfEI~I~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~~~W~~L~iDL~~lt~~~fgt~y~~~~~I~I~ANC 160 (270)
||++++|+|||+|+|+++++|||++||++|+++++|+||++||.+.++|++|||||+++++++||++|.++.+|+|||||
T Consensus 81 k~l~k~F~~ei~I~D~~~~~rR~~~Sn~~k~~~~~~~~~~iPl~l~~~W~~l~idL~~~~~~~y~~~~~~sl~i~I~anc 160 (190)
T PF05018_consen 81 KPLGKYFSFEIDITDDKNNRRRFRFSNFQKETKVTPFHCQIPLRLSPGWNNLQIDLADLTRRAYGTNYFESLRIQICANC 160 (190)
T ss_pred ecCCCcEEEEEEEEeCCCCEEEEEEeeeeccccccccEEEcccccCCCcEEEEEEHHHHHHHHhccCceEEEEEEEecCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCCccccccceecch
Q psy14578 161 RLRRIFFADKLYDSKDIPAEYKLFRKEDQ 189 (270)
Q Consensus 161 RLRRIffsD~lYs~~eLP~ef~l~~p~~~ 189 (270)
|||||||||++|+++|||++|+|++|.++
T Consensus 161 rlRrIyfsD~ly~~~elp~~~~l~~~~~~ 189 (190)
T PF05018_consen 161 RLRRIYFSDRLYSEDELPPEFKLYLPKQE 189 (190)
T ss_pred EEEEEEecCccCChhhCchhhEEccccCC
Confidence 99999999999999999999999998875
No 2
>KOG3213|consensus
Probab=100.00 E-value=1.6e-71 Score=492.10 Aligned_cols=189 Identities=52% Similarity=0.953 Sum_probs=186.4
Q ss_pred CCcccccCCceEEEeccCCCccccccccccCCcEEEEeccCCcceEEEEeeCCccceeEEccCCCCcccceeccEEEEEE
Q psy14578 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYITCPNYRFKSLGIKLPYLCLII 80 (270)
Q Consensus 1 MF~n~~Q~gfvsIf~S~Gs~PL~~Wk~~~k~G~Vkrv~DkdIks~VleI~G~~~~ttyI~~P~d~k~sLGL~~pfLvLqv 80 (270)
||+|+||+||++||+|+|++|+++|++.+++|+|+|++|+||||.|++|+|+|.++||||||++.+++|||++|||||+|
T Consensus 1 mfkn~~q~gfl~il~s~g~~pl~~Wk~~~k~g~I~r~~Dkdiks~V~~i~GSns~tt~Iq~Pke~kqsLGi~~~fLvlli 80 (238)
T KOG3213|consen 1 MFKNTYQSGFLSILYSFGSKPLQEWKKSVKNGHIKRITDKDIKSLVLEIEGSNSSTTYIQCPKESKQSLGIKLPFLVLLI 80 (238)
T ss_pred CccccccccceehhhhhccCcHHHhhhhccCceeEEeeccccceeEEEEeccccccceEECCcccccccCccceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCceEEEEEEEeCCCCEEEEEEeeeeeeeeecccEEEecccCCCCeeEEEEcHHHHHHHHhCcceeEEEeEEEeeee
Q psy14578 81 KNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANC 160 (270)
Q Consensus 81 k~l~k~FsfEI~I~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~~~W~~L~iDL~~lt~~~fgt~y~~~~~I~I~ANC 160 (270)
||++|||+|||+|+|++|++|||++||+||+++++|+||+|||.|+.+||+|||||+++|+++||++|.++.+|+|||||
T Consensus 81 k~m~K~F~~el~I~d~~N~~rR~~~Sn~~ke~~~kp~~~~mPl~m~~~W~~iqlnL~dft~~~~~~~y~etl~iql~Anc 160 (238)
T KOG3213|consen 81 KNMKKYFSFELQILDDKNVRRRFRASNFQKETSVKPFICTMPLVMDAGWNQIQLNLADFTRRAYGTNYGETLSIQLHANC 160 (238)
T ss_pred eccccceEEEEEEecCCceEEEEEeeccchhhcccceEEecceEecCcceeEEeeHHHHHHHHhccceeeEEEEEEecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCCccccccceecch
Q psy14578 161 RLRRIFFADKLYDSKDIPAEYKLFRKEDQ 189 (270)
Q Consensus 161 RLRRIffsD~lYs~~eLP~ef~l~~p~~~ 189 (270)
|||||||.|++|+++++|.+|+|+.+.+.
T Consensus 161 riRriyf~~kl~~~~e~~~~frlm~rf~~ 189 (238)
T KOG3213|consen 161 RIRRIYFADKLYSEAELPLEFRLMLRFQV 189 (238)
T ss_pred EEEEEEeccccCChhhCCCcceEcccccC
Confidence 99999999999999999999999877554
No 3
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=43.46 E-value=89 Score=26.41 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=51.1
Q ss_pred cEEEEEE-eeCC-CceEEEEEEEeCCCCEEEEEEeeeeeeeeecccEEEecccCCCCeeEEEEcHHHHHHHHhCcceeEE
Q psy14578 74 PYLCLII-KNLN-KHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYLET 151 (270)
Q Consensus 74 pfLvLqv-k~l~-k~FsfEI~I~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~~~W~~L~iDL~~lt~~~fgt~y~~~ 151 (270)
.++.|++ |... +..++-+...|++=+-.++++.--...-.. .....+.+.-..||..|..|. ..+...
T Consensus 37 h~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~~~dL-~e~~~v~l~~p~Gwv~i~~~~---------~~~~~~ 106 (129)
T cd08159 37 HWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHSPSDL-RELKDVNIRPSNGWVALLEDD---------TLKCPY 106 (129)
T ss_pred EEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecCCHHHh-heeEEEEecCCCceEEEEcCC---------cEEEEE
Confidence 3566666 3332 566777777888888888887654432221 123456666679999986654 334555
Q ss_pred EeEEEeee------eeeeee
Q psy14578 152 LQIKMHAN------CRLRRI 165 (270)
Q Consensus 152 ~~I~I~AN------CRLRRI 165 (270)
.+|.|-+| ||||.|
T Consensus 107 iqI~I~~nhqnG~DthiRgi 126 (129)
T cd08159 107 IEIRIKRCRSDGIDTRIRGL 126 (129)
T ss_pred EEEEEHHhccCCccceeeEE
Confidence 66766544 778765
No 4
>KOG1461|consensus
Probab=40.26 E-value=28 Score=36.86 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=20.2
Q ss_pred eEEEeeeeeeeeeeecCCCCCCCCCcccccc
Q psy14578 153 QIKMHANCRLRRIFFADKLYDSKDIPAEYKL 183 (270)
Q Consensus 153 ~I~I~ANCRLRRIffsD~lYs~~eLP~ef~l 183 (270)
.++|+.||+|++-+.+|.. .++..+.+
T Consensus 373 ~v~Igdnc~I~~aii~d~v----~i~~~~~l 399 (673)
T KOG1461|consen 373 NVTIGDNCRIDHAIICDDV----KIGEGAIL 399 (673)
T ss_pred CcEECCCceEeeeEeecCc----EeCCCccc
Confidence 5689999999999998864 55555554
No 5
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=26.87 E-value=3.9e+02 Score=22.65 Aligned_cols=117 Identities=18% Similarity=0.266 Sum_probs=66.1
Q ss_pred cccccccc-cC-CcEEEEeccCCcceEEEEeeCCccceeEEccCCCCcccceeccEEEEEE-eeC-CCceEEEEEE-EeC
Q psy14578 22 LSLWDTDV-HN-GYIRRITDYDLNSLALEIISTTVMNTYITCPNYRFKSLGIKLPYLCLII-KNL-NKHFSFEVQI-IDS 96 (270)
Q Consensus 22 L~~Wk~~~-k~-G~Vkrv~DkdIks~VleI~G~~~~ttyI~~P~d~k~sLGL~~pfLvLqv-k~l-~k~FsfEI~I-~D~ 96 (270)
++.|+.+. |. ..|..+.|.+.. ||=+. =|..-.++.|++ |.. -+..++-|.. .|+
T Consensus 6 ~a~w~vSS~k~g~gv~~L~D~~~~-------------TyWQS-------Dg~qPH~I~i~f~k~~~i~~l~i~vd~~~De 65 (139)
T cd08366 6 LAVWSLSSAKPGNGVDQLRDDSLD-------------TYWQS-------DGPQPHLINIQFSKKTDISAVALYLDYKLDE 65 (139)
T ss_pred CEEEEEEeCCCCCCHHHhcCCCCC-------------ccCCC-------CCCCCEEEEEEecCCcEEEEEEEEEccCCCC
Confidence 67788753 22 256667776653 33331 122234556666 333 3667777887 888
Q ss_pred CCCEEEEEEeeeeeeeeecccEEEecccCCCCeeEEEEcHHHHHHHHhCcc--eeEEEeEEEeee------eeeeee
Q psy14578 97 KNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTL--YLETLQIKMHAN------CRLRRI 165 (270)
Q Consensus 97 ~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~~~W~~L~iDL~~lt~~~fgt~--y~~~~~I~I~AN------CRLRRI 165 (270)
+-+-.++++.--...-..+ ....+.|....||..|.|.=.. ..+ +....+|.|-+| ||||.|
T Consensus 66 SYtP~~I~v~~G~~~~dl~-e~~~v~l~~p~Gwv~i~l~~~~------~~~~~~~~~iqi~I~~nh~nG~DthiR~i 135 (139)
T cd08366 66 SYTPSKISIRAGTSPHDLQ-EVRTVELEEPNGWVHIPLEDNR------DGKPLRTFFLQIAILSNHQNGRDTHIRQI 135 (139)
T ss_pred CCCCEEEEEEEECCcCchh-heEEEEcCCCCEEEEEEccCCC------CCCeeEEEEEEEEEecccCCCCCcceeee
Confidence 8888888877554433222 2455566656899888543221 122 333445555554 677754
No 6
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=25.10 E-value=3.8e+02 Score=22.92 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=47.0
Q ss_pred cEEEEEEeeC--CCceEEEEEEEeCCCCEEEEEEeeeeeeeeecccEEEecccCC-CCeeEEEEcHHHHHHHHhCcceeE
Q psy14578 74 PYLCLIIKNL--NKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICLN-EGWNEVRIDLQDFVYKSYKTLYLE 150 (270)
Q Consensus 74 pfLvLqvk~l--~k~FsfEI~I~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~-~~W~~L~iDL~~lt~~~fgt~y~~ 150 (270)
.++.|+|++- =+..++-+.-.|++=.-.++.+..-. .-. -.....+.+... .+|..|.-|+ ..|..
T Consensus 42 H~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~-~~d-L~ei~~V~i~~~~~g~V~il~~~---------~~~~~ 110 (134)
T cd08666 42 HWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE-GDN-LKKLNDVSIDETLIGDVCILEDM---------TTHLP 110 (134)
T ss_pred eEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC-ccC-hhheEEEEeCCCCCCeEEEecCC---------ceEeE
Confidence 4555666322 24555666667887777777665444 111 122345566553 6899984332 25556
Q ss_pred EEeEEEeee------eeeeee
Q psy14578 151 TLQIKMHAN------CRLRRI 165 (270)
Q Consensus 151 ~~~I~I~AN------CRLRRI 165 (270)
...|.|-+| ||||.|
T Consensus 111 ~iqI~I~~nhqnG~DthIRgi 131 (134)
T cd08666 111 VIEIRIKECKDEGIDVRIRGI 131 (134)
T ss_pred EEEEEeHHhccCCccceeeEE
Confidence 777777654 788876
No 7
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=20.11 E-value=1.6e+02 Score=29.40 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=54.4
Q ss_pred ceEEEEEEEeCCCCEEEEEEeeeeeeeeecccEEEecccCCCCeeEEEEcHHHHHHHHhCcceeE----EEeEEE--eee
Q psy14578 86 HFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYLE----TLQIKM--HAN 159 (270)
Q Consensus 86 ~FsfEI~I~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~~~W~~L~iDL~~lt~~~fgt~y~~----~~~I~I--~AN 159 (270)
.|.++..|+|+ +..||++++..+..++|.+-+. --|.+|.+.|.+.++|..+.+ +-+|++ .+=
T Consensus 303 e~~i~leVld~--N~G~fsL~~g~~~~kmT~~~~~---------~ei~idi~~L~~Ly~gyf~~~~L~~~gkl~~ke~~l 371 (389)
T COG4552 303 EFEIVLEVLDE--NGGRFSLKEGDGRAKMTETDAA---------AEIEIDIDVLGSLYTGYFTASTLAAAGKLRTKESQL 371 (389)
T ss_pred ceEEEEEeecc--CCCeEEeecccccccccccccc---------ceeeeeHHHHHHHHhccccHHHHHHhcCcCCcHHHH
Confidence 48888999998 7889999999888888765433 357899999999999874433 223332 333
Q ss_pred eeeeeeeecCCC
Q psy14578 160 CRLRRIFFADKL 171 (270)
Q Consensus 160 CRLRRIffsD~l 171 (270)
.||+.||.+|..
T Consensus 372 ~rl~qifa~~~p 383 (389)
T COG4552 372 LRLDQIFASDVP 383 (389)
T ss_pred HHHHHHhccCCc
Confidence 567777777764
No 8
>PF10807 DUF2541: Protein of unknown function (DUF2541); InterPro: IPR020240 This entry represents proteins found in the Gammaproteobacteria that have no known function.
Probab=19.78 E-value=5.8e+02 Score=21.97 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=47.7
Q ss_pred EEccCCCCcccceeccEEEEEEeeCCCceEEEEEEEeCCCCEEEEEEeeeeeeeeecccEEEecccC----CCCeeEEEE
Q psy14578 59 ITCPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICL----NEGWNEVRI 134 (270)
Q Consensus 59 I~~P~d~k~sLGL~~pfLvLqvk~l~k~FsfEI~I~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l----~~~W~~L~i 134 (270)
+.+|...+..|-|++|..-.+=+ |++.-+.+..--=..+=++|..+..+....+|=.+ .++|-++.-
T Consensus 32 t~m~~ne~~~~~l~lpvCR~vkr---------Iql~AdRgDi~L~~a~v~Fk~~~g~s~~l~~~~~ikeg~tT~Wi~i~s 102 (134)
T PF10807_consen 32 TIMPRNETNDLTLKLPVCRRVKR---------IQLKADRGDIQLSGATVYFKNANGESQTLNFPRSIKEGQTTDWININS 102 (134)
T ss_pred EEeeccCCCCceeeccceeeeee---------EEEeeccCCeEeeeeEEEEEeccccceEEcccccccCCCccCcEEecC
Confidence 67788777777777776543321 55555553221112223333333344455666665 489998865
Q ss_pred cHHHHHHHHhCcceeEEEeEEEeee
Q psy14578 135 DLQDFVYKSYKTLYLETLQIKMHAN 159 (270)
Q Consensus 135 DL~~lt~~~fgt~y~~~~~I~I~AN 159 (270)
| +.+=+.+.+|+++++
T Consensus 103 d---------n~nkRCVskI~~~G~ 118 (134)
T PF10807_consen 103 D---------NDNKRCVSKITFSGH 118 (134)
T ss_pred C---------CCcceeeeEEEEEee
Confidence 4 234466778888875
No 9
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=19.78 E-value=4.7e+02 Score=22.18 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=40.8
Q ss_pred CceEEEEEEEeCCCCEEEEEEeeeeeeeeecccEEEecccC-CCCeeEEEEcHHHHHHHHhCcceeEEEeEEEeee----
Q psy14578 85 KHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICL-NEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHAN---- 159 (270)
Q Consensus 85 k~FsfEI~I~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l-~~~W~~L~iDL~~lt~~~fgt~y~~~~~I~I~AN---- 159 (270)
+..++-+.-.|++=+-.++.+.--...-..+ ....+.+.. ..||..|..| ...+.....|.|-+|
T Consensus 50 ~~l~i~v~~~DeSYtPs~I~I~~G~~~~dL~-e~~~v~l~~~~~Gwv~l~~~---------~~~~~~~iqI~I~~nhqnG 119 (131)
T cd08667 50 RHLSIAVAATDQSYMPQQVTVSVGRSASSLQ-EVRDVHIPSNVTGYVTLLEN---------ANISYLVVQINIKRCHSDG 119 (131)
T ss_pred EEEEEEEcCCCCCcCCcEEEEEecCCHhhhe-eeEEEEcCCCCceeEEEEcC---------CceEEEEEEEEeHHhccCC
Confidence 4445555557777777777665432221111 234566653 3689998544 234555667777654
Q ss_pred --eeeeee
Q psy14578 160 --CRLRRI 165 (270)
Q Consensus 160 --CRLRRI 165 (270)
||||.|
T Consensus 120 ~DthIRgi 127 (131)
T cd08667 120 CDTRIHGL 127 (131)
T ss_pred ccceeeEE
Confidence 778765
No 10
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=19.47 E-value=2.7e+02 Score=22.23 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.7
Q ss_pred eccEEEEEEeeCCCceEEEEEEEeCCCCEEE
Q psy14578 72 KLPYLCLIIKNLNKHFSFEVQIIDSKNTKRR 102 (270)
Q Consensus 72 ~~pfLvLqvk~l~k~FsfEI~I~D~~~~rRR 102 (270)
.-|||-+.+++-+.- .++|...|+++....
T Consensus 66 ~NP~l~F~~~~~~~g-~l~v~~~Dn~G~~~~ 95 (100)
T PF08770_consen 66 ENPYLRFSFKGKKSG-TLTVTWTDNKGNSFS 95 (100)
T ss_dssp SS-EEEEEEEESSSE-EEEEEEEETTS-EEE
T ss_pred CCCcEEEEEecCCCc-EEEEEEEECCCCEEE
Confidence 469999999988777 999999999998654
Done!