Query psy14578
Match_columns 270
No_of_seqs 116 out of 197
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 23:24:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jhj_A APC10; beta sandwich, j 23.7 2.6E+02 0.0088 23.4 7.4 87 73-165 60-155 (171)
2 1gqp_A DOC1/APC10; cell cycle, 20.7 1.1E+02 0.0037 27.0 4.6 120 22-165 58-188 (221)
3 1dmu_A BGLI restriction endonu 17.3 47 0.0016 30.1 1.5 71 31-106 165-238 (299)
4 3jtz_A Integrase; four strande 16.8 1.6E+02 0.0055 21.7 4.2 30 76-108 26-56 (88)
5 3ju0_A Phage integrase; four s 14.4 2.1E+02 0.0072 21.9 4.5 30 76-108 26-56 (108)
6 2w7q_A Outer-membrane lipoprot 13.6 5.1E+02 0.017 20.8 9.2 28 87-114 159-186 (204)
7 3o27_A Putative uncharacterize 11.3 86 0.0029 23.0 1.2 33 54-98 22-54 (68)
8 2cov_D Beta-1,3-xylanase; carb 10.8 1E+02 0.0035 24.0 1.5 12 124-135 31-42 (104)
9 2oxg_Z SOXZ protein; immunoglo 10.0 4.7E+02 0.016 20.0 5.2 29 73-102 72-100 (108)
10 2yhg_A SDE_182CT, cellulose-bi 8.4 3.8E+02 0.013 25.8 4.9 14 84-97 409-422 (437)
No 1
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=23.74 E-value=2.6e+02 Score=23.44 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=51.6
Q ss_pred ccEEEEEE-eeC-CCceEEEEEE-EeCCCCEEEEEEeeeeeeeeecccEEEecccCCCCeeEEEEcHHHHHHHHhCccee
Q psy14578 73 LPYLCLII-KNL-NKHFSFEVQI-IDSKNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYL 149 (270)
Q Consensus 73 ~pfLvLqv-k~l-~k~FsfEI~I-~D~~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~~~W~~L~iDL~~lt~~~fgt~y~ 149 (270)
-.++.|++ +.. -+...+-+.- .|++-+-.+++|..-...-..+ ....+.|.-..||..|.+.-.. =.....
T Consensus 60 pH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~~~dL~-ei~~v~l~~p~Gwv~i~l~~~~-----~~~~~~ 133 (171)
T 1jhj_A 60 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQ-EIRQLELVEPSGWIHVPLTDNH-----KKPTRT 133 (171)
T ss_dssp SEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTSCE-EEEEEECSSCEEEEEEECBCTT-----SSBEEE
T ss_pred CeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCCcccce-eEEEEEccCCCEEEEEEeccCC-----CCceeE
Confidence 45667777 333 3666777775 7888888888876443322221 1345666666889888871110 011233
Q ss_pred EEEeEEEeee------eeeeee
Q psy14578 150 ETLQIKMHAN------CRLRRI 165 (270)
Q Consensus 150 ~~~~I~I~AN------CRLRRI 165 (270)
...+|.|-+| ||||.|
T Consensus 134 ~~IQI~I~~nhqnG~DthIR~i 155 (171)
T 1jhj_A 134 FMIQIAVLANHQNGRDTHMRQI 155 (171)
T ss_dssp EEEEEEEEEEGGGCSSCEECEE
T ss_pred EEEEEEEeccCCCCCccEEEEE
Confidence 4677788664 588864
No 2
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=20.73 E-value=1.1e+02 Score=27.03 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=64.9
Q ss_pred ccccccccc-C-CcEEEEeccCCcceEEEEeeCCccceeEEccCCCCcccceeccEEEEEE-eeC-CCceEEEEEEE-eC
Q psy14578 22 LSLWDTDVH-N-GYIRRITDYDLNSLALEIISTTVMNTYITCPNYRFKSLGIKLPYLCLII-KNL-NKHFSFEVQII-DS 96 (270)
Q Consensus 22 L~~Wk~~~k-~-G~Vkrv~DkdIks~VleI~G~~~~ttyI~~P~d~k~sLGL~~pfLvLqv-k~l-~k~FsfEI~I~-D~ 96 (270)
++.|+.+.. . ..|..+.|.... ||=+. =|.--.++.|++ |.. -+..++-|.-. |+
T Consensus 58 ~A~WsvSS~K~g~gV~~L~D~s~~-------------TyWQS-------DG~qPH~ItI~f~k~v~I~~L~iyvD~~~De 117 (221)
T 1gqp_A 58 LALWKPSSFKLGNPVDFALDDNYD-------------TFWQS-------DGGQPHQLDIMFSKRMDICVMAIFFSMIADE 117 (221)
T ss_dssp GSEEEESCCCTTCCGGGGSSSCTT-------------CCEEC-------CSSSSEEEEEEEEEEEEECEEEEEEEHHHHG
T ss_pred ceEEEEecCCCcCCHHHhcCCCcc-------------ceecc-------CCCCCeEEEEEEcCCceEEEEEEEECCCCCC
Confidence 677877543 2 256666666553 33331 122344666676 333 36777777765 88
Q ss_pred CCCEEEEEEeeeeeeeeecccEEEecccCCCCeeEEEEcHHHHHHHHhCcceeEEEeEEEeee------eeeeee
Q psy14578 97 KNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHAN------CRLRRI 165 (270)
Q Consensus 97 ~~~rRR~~~Sn~~ke~k~~p~~~~iPL~l~~~W~~L~iDL~~lt~~~fgt~y~~~~~I~I~AN------CRLRRI 165 (270)
+-+-.++++.--...-... ....+.|.--.||..|.|. +-... -+.-+....+|.|.+| ||||.|
T Consensus 118 SYtPs~I~V~aG~~~~dL~-e~~~v~l~~p~GWv~i~l~--d~~~~-~~~l~~~~IQI~I~~nhqnGrDThIRqI 188 (221)
T 1gqp_A 118 SYAPSLVKVYAGHSPSDAR-FYKMLEVRNVNGWVALRFL--DNRED-DQLLKCQFIRLLFPVNHENGKDTHLRGI 188 (221)
T ss_dssp GGSEEEEEEEEESSTTTCE-EEEEEEEEECEEEEEECCC-----------EEEEEEEEEEEEESTTCSSCEESCE
T ss_pred CCCCEEEEEEEeCCcCcce-EEEEEEecCCCEEEEEEcc--CCCCC-CCeeEEEEEEEEEeeccCCCCccEEEEE
Confidence 8888888876554332221 2344555556789887642 11000 0112444566666443 899855
No 3
>1dmu_A BGLI restriction endonuclease; protein-DNA complex, active site calcium IONS, alpha/beta structure, A:A mismatch, hydrolase/DNA complex; HET: DNA; 2.20A {Bacillus subtilis} SCOP: c.52.1.4
Probab=17.34 E-value=47 Score=30.07 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCcEEEEeccCCcceEEEEeeCCccceeEEccCCCC---cccceeccEEEEEEeeCCCceEEEEEEEeCCCCEEEEEEe
Q psy14578 31 NGYIRRITDYDLNSLALEIISTTVMNTYITCPNYRF---KSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFS 106 (270)
Q Consensus 31 ~G~Vkrv~DkdIks~VleI~G~~~~ttyI~~P~d~k---~sLGL~~pfLvLqvk~l~k~FsfEI~I~D~~~~rRR~~~S 106 (270)
+|. ..++...|+...+.|+|+. ++++-.|+-+- -+=|.+-|.+++.|||...--|++ =-|...--+||.+.
T Consensus 165 ~G~-W~~f~~Gi~Nn~~ti~G~R--~n~~F~p~lPPlYilsDg~ivpvv~~~iKpvY~m~sl~--~~d~gqpl~~i~~a 238 (299)
T 1dmu_A 165 NGD-WAQLEGGIQNNQQTIQGPR--SSQIFLPTIPPLYILSDGTIAPVVHLFIKPIYAMRSLT--KGDTGQSLYKIKLA 238 (299)
T ss_dssp CCB-CCSTTSCCBCCCEEEECSS--CEEEECCCBCSEEECTTCCEEEEEEEEEEEEEEEGGGS--TTCCCEEEEEEEEE
T ss_pred CCc-HHHHhcccccCeeeeccCc--CCccccCCCCCeEEecCCceeeEEEEEEehhhhhhhcc--cCCCCceeeEEEEE
Confidence 556 6777888999999999985 58888877653 355889999999999875444433 11223334555544
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=16.82 E-value=1.6e+02 Score=21.69 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=22.7
Q ss_pred EEEEEeeCC-CceEEEEEEEeCCCCEEEEEEeee
Q psy14578 76 LCLIIKNLN-KHFSFEVQIIDSKNTKRRIRFSNY 108 (270)
Q Consensus 76 LvLqvk~l~-k~FsfEI~I~D~~~~rRR~~~Sn~ 108 (270)
|+|.|.|.| |.|.|.-.+ .+.++++.+-++
T Consensus 26 L~L~V~psG~K~w~~ryr~---~Gk~~~~~LG~y 56 (88)
T 3jtz_A 26 LYLLVKPGGSRHWYLKYRI---SGKESRIALGAY 56 (88)
T ss_dssp EEEEECTTSCEEEEEEEEE---TTEEEEEEEEET
T ss_pred eEEEEecCCCEEEEEEEEe---CCeEEEEEeECC
Confidence 677888875 788888764 567888888765
No 5
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=14.43 E-value=2.1e+02 Score=21.95 Aligned_cols=30 Identities=13% Similarity=0.366 Sum_probs=22.6
Q ss_pred EEEEEeeCC-CceEEEEEEEeCCCCEEEEEEeee
Q psy14578 76 LCLIIKNLN-KHFSFEVQIIDSKNTKRRIRFSNY 108 (270)
Q Consensus 76 LvLqvk~l~-k~FsfEI~I~D~~~~rRR~~~Sn~ 108 (270)
|+|.|.|.| +.|.|...+ .+.++++.+-.+
T Consensus 26 L~L~V~psG~K~w~~rYr~---~GK~~~~~LG~y 56 (108)
T 3ju0_A 26 MHLLVHPNGSKYWRLSYRF---EKKQRLLALGVY 56 (108)
T ss_dssp EEEEECTTSCEEEEEEEEE---TTEEEEEEEEEE
T ss_pred eEEEEEcCCCEEEEEEEEE---cCceEEEecCCC
Confidence 677888875 788888764 567788887765
No 6
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=13.62 E-value=5.1e+02 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=22.8
Q ss_pred eEEEEEEEeCCCCEEEEEEeeeeeeeee
Q psy14578 87 FSFEVQIIDSKNTKRRIRFSNYHSCSKI 114 (270)
Q Consensus 87 FsfEI~I~D~~~~rRR~~~Sn~~ke~k~ 114 (270)
..-.+.|.|..+.+-++.||+++....+
T Consensus 159 ~l~~~~i~d~~G~~t~i~f~~~~~n~~l 186 (204)
T 2w7q_A 159 KVNDMQMIDGVGQRTNILFFDVKMNEAL 186 (204)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEESCCC
T ss_pred cceEEEEEECCCCEEEEEEEccccCCCC
Confidence 5666889999999999999998875543
No 7
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=11.27 E-value=86 Score=22.97 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=24.4
Q ss_pred ccceeEEccCCCCcccceeccEEEEEEeeCCCceEEEEEEEeCCC
Q psy14578 54 VMNTYITCPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKN 98 (270)
Q Consensus 54 ~~ttyI~~P~d~k~sLGL~~pfLvLqvk~l~k~FsfEI~I~D~~~ 98 (270)
..+-||++|++-.+.|||+ .|..|.++|+ |.++
T Consensus 22 ~etyYInIPaeI~kaLgIk----------~gD~fel~ve--~kdg 54 (68)
T 3o27_A 22 HTTFYLLIPKDIAEALDIK----------PDDTFILNME--QKDG 54 (68)
T ss_dssp CCCEEEEECHHHHHHTTCC----------TTCCEEEEEE--EETT
T ss_pred ceEEEEeCcHHHHHHhCCC----------CCCEEEEEEe--cCCC
Confidence 3577899999988999997 3666766665 4444
No 8
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=10.80 E-value=1e+02 Score=24.03 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=10.1
Q ss_pred cCCCCeeEEEEc
Q psy14578 124 CLNEGWNEVRID 135 (270)
Q Consensus 124 ~l~~~W~~L~iD 135 (270)
.-+.+|+.||+|
T Consensus 31 gWsAgwnY~CLd 42 (104)
T 2cov_D 31 GWSAGWNYVCLN 42 (104)
T ss_dssp CCCCSSEEEEET
T ss_pred CccceeeEEEec
Confidence 447899999998
No 9
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=9.97 E-value=4.7e+02 Score=19.99 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=23.5
Q ss_pred ccEEEEEEeeCCCceEEEEEEEeCCCCEEE
Q psy14578 73 LPYLCLIIKNLNKHFSFEVQIIDSKNTKRR 102 (270)
Q Consensus 73 ~pfLvLqvk~l~k~FsfEI~I~D~~~~rRR 102 (270)
-||+.+.+++-+.- .+++...|+.+....
T Consensus 72 NP~~~F~~~~~~~g-~l~v~~~Dn~G~~~~ 100 (108)
T 2oxg_Z 72 NPYFEFDAKVDAAG-EFKFTWYDDDGSVYE 100 (108)
T ss_dssp SCEEEEEEEECSSE-EEEEEEEETTSCEEE
T ss_pred CCeEEEEEecCCCc-EEEEEEEECCCCEEE
Confidence 69999999876554 889999999998654
No 10
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=8.43 E-value=3.8e+02 Score=25.78 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=12.6
Q ss_pred CCceEEEEEEEeCC
Q psy14578 84 NKHFSFEVQIIDSK 97 (270)
Q Consensus 84 ~k~FsfEI~I~D~~ 97 (270)
+..+.|.|+|+|..
T Consensus 409 ~~tl~f~LtVTD~~ 422 (437)
T 2yhg_A 409 GKDIHILLTLRDNG 422 (437)
T ss_dssp TCEEEEEEEEEECS
T ss_pred CcEEEEEEEEEeCC
Confidence 67899999999997
Done!