RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14578
(270 letters)
>gnl|CDD|191163 pfam05018, DUF667, Protein of unknown function (DUF667). This
family of proteins are highly conserved in eukaryotes.
Some proteins in the family are annotated as
transcription factors. However, there is currently no
support for this in the literature.
Length = 190
Score = 253 bits (649), Expect = 8e-86
Identities = 96/188 (51%), Positives = 141/188 (75%)
Query: 1 MFKNAYQGRFISIFYSIGSKPLSLWDTDVHNGYIRRITDYDLNSLALEIISTTVMNTYIT 60
MF+NAYQ F+S+ YS+GSKPL +WD NG+I+R+TD D+ SL LEI+ T V +YIT
Sbjct: 1 MFRNAYQSGFLSLLYSVGSKPLQIWDMHTKNGHIKRVTDEDIKSLVLEIMGTNVSTSYIT 60
Query: 61 CPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVT 120
CP +SLGIKLP+L +++KN+ K+FSFEVQI+D KN +RR R SNY S +++ PFI T
Sbjct: 61 CPEDPKQSLGIKLPFLVMLVKNMKKYFSFEVQILDDKNNRRRFRASNYQSVTRVKPFICT 120
Query: 121 FPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAE 180
P+ L+ GWN+++ +L DF ++Y T Y+ETL++++HANCR+RR++F D+LY ++P E
Sbjct: 121 MPLRLDPGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFCDRLYTEDELPPE 180
Query: 181 YKLFRKED 188
+L+ +
Sbjct: 181 LRLYCPKK 188
>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family. This family includes eukaryotic
translation initiation factor 6 as well as presumed
archaebacterial homologues.
Length = 197
Score = 34.4 bits (80), Expect = 0.036
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 45 LALEIISTTVMNTYI----TCPNYRFKSLGIKLPYLCLI--IKNLNKHFSFEVQIIDSKN 98
L +E++ T++ + + T N S G+ +P + +L + V+ ++ K
Sbjct: 39 LGVEVVETSIAGSRLVGSLTVGN----SNGLLVPSTATDEELDHLKESLDVNVERLEEKL 94
Query: 99 T 99
T
Sbjct: 95 T 95
>gnl|CDD|177543 PHA03146, PHA03146, helicase-primase primase subunit; Provisional.
Length = 1075
Score = 33.8 bits (77), Expect = 0.098
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 187 EDQLATSKIMDEFPYPPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLEMPAGGEDGG 246
E+ S +D++ E+E ++ EM +Y+ D +E+PAGG
Sbjct: 717 EECYMESDFLDDYAAME----EDEGWDDYEMAVAR----EGEAQYACDDVEVPAGGTPPN 768
Query: 247 NENQENPEPDAA 258
+ P AA
Sbjct: 769 KAGAKTPLQRAA 780
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 32.2 bits (73), Expect = 0.29
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 200 PYPPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLEMPAGGEDGGNENQENPEPDAAG 259
P PP + + Q + P+ P +E + P +
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPE-PPTSEPEPDSPGPPQSETPTSSPPPQSP 207
Query: 260 GD-DNEDQGDEP 270
D E Q P
Sbjct: 208 PDEPGEPQSPTP 219
Score = 28.4 bits (63), Expect = 4.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 242 GEDGGNENQENPEPDAAGGDDNEDQGDEP 270
GE Q+ P P+ ++ED+ EP
Sbjct: 212 GEPQSPTPQQAPSPNTQQAVEHEDEPTEP 240
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 30.7 bits (70), Expect = 0.99
Identities = 35/251 (13%), Positives = 73/251 (29%), Gaps = 32/251 (12%)
Query: 8 GRFISIFYSIG--SKPLSL-WDTDVHNGYIRR----ITDYDLNSLALEIISTTVMNTYIT 60
G+ I SI L L WD D + I + N L + + ++ + I+
Sbjct: 816 GKPIRGISSIQLVRTCLVLNWDQDKKSSSIEEARASFVEVRTNGLIRDFLRINLVKSPIS 875
Query: 61 CPNYRFKSLGIKL--------------PYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRFS 106
R L + ++L+++ +++ + +
Sbjct: 876 YIRKRNDPSSSGLLVQSNNFLDSTNIYSKAEIQSQSLSQNQGTIRTLLNRNKESQSLLIL 935
Query: 107 NYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTL----YLETLQIKMHANCRL 162
+ C +I PF N + I +++ + L + + + H +
Sbjct: 936 SSSDCFRIGPFNGKKSKYHNIKESNPLIPIRNSLGPLGTVLQIANFSSSYHLLTHNQILV 995
Query: 163 RRIFFADKLYDSKDIPAEYKLFRKEDQL-----ATSKIMDEFPYPPSYLGENEDMNE--D 215
+ D L + + E+ S I+ Y + E
Sbjct: 996 TKYLQLDNLKQTFQVKVLKYYLIDENGKIYNPDPCSNIILNPFNLNWYFLHHNYCEETST 1055
Query: 216 EMGQGDFFNEN 226
+ G F EN
Sbjct: 1056 IISLGQFICEN 1066
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 197 DEFPYPPSYLGENEDMNEDEMGQGDFFNENLMPKYSADFLEMP 239
E+PY + N+ NE QG FF N+ P D L P
Sbjct: 81 AEYPYRTADGKCNDPFNEGAGSQGTFFGRNMPPVDQKDKLLDP 123
>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6;
Provisional.
Length = 222
Score = 29.8 bits (68), Expect = 1.2
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 45 LALEIISTTVMNTYI----TCPNYRFKSLGIKLPYLCLI--IKNLNKHFSFEVQIIDSKN 98
L +E++ TT+ + + N S GI +P + L ++ L + V+++ SK
Sbjct: 42 LGVEVVETTIAGSSLVGSLAAGN----SNGILVPSIVLDEELELLKEALDLNVEVLPSKL 97
Query: 99 T 99
T
Sbjct: 98 T 98
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 28.1 bits (63), Expect = 6.2
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 208 ENEDMNEDEMGQGDFFNENLMPKYSADFLEMPAGGEDGGNENQENPEPDAAGGDDNEDQG 267
E++D +ED + +Y + N + N A DD++ +G
Sbjct: 494 EDDDEDEDSSSDST---LEELEEYMDQMDAELKQTDSSNNADISNSGSSGAEDDDDDIEG 550
Query: 268 DEP 270
EP
Sbjct: 551 VEP 553
>gnl|CDD|180670 PRK06722, PRK06722, exonuclease; Provisional.
Length = 281
Score = 27.3 bits (60), Expect = 7.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 131 EVRIDLQDFVYKSYKTLYLET 151
E RIDLQ FV+++Y+ L+ T
Sbjct: 122 ERRIDLQKFVFQAYEELFEHT 142
>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein
Signaling (RGS) family. This CD contains members of the
regulator of G-protein signaling (RGS) family. RGS is a
GTPase activating protein which inhibits G-protein
mediated signal transduction. The protein is largely
cytosolic, but G-protein activation leads to
translocation of this protein to the plasma membrane. A
nuclear form of this protein has also been described,
but its sequence has not been identified. There are
multiple alternatively spliced transcript variants in
this family with some members having additional domains
(ex. PDZ and RGS) downstream of the C2 domain. The C2
domain was first identified in PKC. C2 domains fold into
an 8-standed beta-sandwich that can adopt 2 structural
arrangements: Type I and Type II, distinguished by a
circular permutation involving their N- and C-terminal
beta strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions.
Length = 119
Score = 26.3 bits (58), Expect = 9.4
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 84 NKHFSFEVQIIDSKNTKRRIRFSNYHSCSK 113
++ FSF+V D ++R+ + ++ SK
Sbjct: 64 HETFSFDVNERDY---QKRLLVTVWNKLSK 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.420
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,096,158
Number of extensions: 1341065
Number of successful extensions: 939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 27
Length of query: 270
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 175
Effective length of database: 6,723,972
Effective search space: 1176695100
Effective search space used: 1176695100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)