RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14578
(270 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 84/247 (34%)
Query: 14 FYSIGSKPLSL--WDTDVHNGYIRRITD-YDLNSLALEIISTTVMNTYITCPNYRFKSLG 70
F+ K +++ + G R + Y SL I+ ++ N P+
Sbjct: 292 FFVSVRKAITVLFF-----IGV--RCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSISN 343
Query: 71 IKLPYLCLIIKNLNKHFSFEVQI-IDSKNTKRRIRFSNYHSCSKINPFIVT-FPICLNEG 128
+ + + N H Q+ I N + +V+ P
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN--------------LVVSGPP------ 383
Query: 129 WNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAEYKLFRKED 188
++LY N LR+ L S+ IP F +
Sbjct: 384 ----------------QSLY--------GLNLTLRKAKAPSGLDQSR-IP-----FSER- 412
Query: 189 QLATSKIMDEF-----PYPPSYLGE-NEDMNEDEMGQG-DFFNENL-MPKYSADFLEMPA 240
K + F P+ L ++ +N+D + F +++ +P Y
Sbjct: 413 ---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT------- 462
Query: 241 GGEDGGN 247
DG +
Sbjct: 463 --FDGSD 467
Score = 35.8 bits (82), Expect = 0.013
Identities = 28/183 (15%), Positives = 42/183 (22%), Gaps = 66/183 (36%)
Query: 110 SCSKI---NP--FIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQIKMHANCRLRR 164
S I NP + F E +R + ++++ L+T +I N
Sbjct: 1660 SILDIVINNPVNLTIHFG---GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 165 IFFADKLYDSKDIPAEYKLFRKED-Q---LATSK-----IMDEFPYPPSY------LGEN 209
F L + Q K + + P LGE
Sbjct: 1717 YTFRS--------EKG-LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE- 1766
Query: 210 EDMNEDEMGQGDFFNENLMPKYSADFLEMPAGG---EDG-------GNENQENPEPDAAG 259
Y+A L A E G Q D G
Sbjct: 1767 ---------------------YAA--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 260 GDD 262
+
Sbjct: 1804 RSN 1806
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell
cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7
PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Length = 226
Score = 31.3 bits (70), Expect = 0.22
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 17/163 (10%)
Query: 26 DTDVHNGYIRRITDYDLNSLA-LEIISTTVMNTYITCPNYRFKSLGIKLPYLCLIIKNLN 84
D + + + RIT D+ +L ++ V+N Y+ R K G ++ +
Sbjct: 23 DEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHV------FS 76
Query: 85 KHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSY 144
F +++ + KR + N I PI W+ V IDL+
Sbjct: 77 TFFYPKLKSGGYQAVKRWTKGVNLFEQEII-----LVPIHRKVHWSLVVIDLRK-----K 126
Query: 145 KTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAEYKLFRKE 187
YL+++ K H C + + D+ ++ +
Sbjct: 127 CLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHH 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.49
Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 58/226 (25%)
Query: 33 YIRRITDYDLNSLALEIISTTVMNTYITCPNYRFKSLGIKLPYLCLIIKN---------- 82
++ D+ + I+S ++ I + G + L+ K
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 83 -LNKHFSFEVQIIDSKNTKRRIRFSNYHSC-SKI---NPFIVTFPICLNEGWNEVRIDLQ 137
L ++ F + I ++ + + Y ++ N + + + + ++R L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 138 D-------FVY------KSYKTLYLETLQ--------------IKMHANCR--------L 162
+ + K+ + L+ + + NC L
Sbjct: 146 ELRPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEML 202
Query: 163 RRIFF-ADKLYDSK-DIPAEYKLFRKEDQLATSKIMDEFPYPPSYL 206
+++ + D + S+ D + KL Q +++ PY L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Score = 27.9 bits (61), Expect = 4.6
Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 36/154 (23%)
Query: 86 HFSFEVQIIDSKNTKRRIRFSNYHSCSKI-----NPFIVTFPICLNEGWNEVRIDLQDFV 140
H FE + I + F+ F + + D+QD
Sbjct: 6 HMDFETGEHQ-------------YQYKDILSVFEDAFVDNF---------DCK-DVQDMP 42
Query: 141 YKSYKTLYLETLQIKMHANCRLRRIFFADKLYDSKDIPAEYKLFRKE-DQLATSKIMDEF 199
++ + + A R+F L ++ + F +E ++ +M
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQE--EMVQKFVEEVLRINYKFLMSPI 98
Query: 200 PYPPSYLGENEDMNEDEMGQGDFFNEN-LMPKYS 232
M ++ + +N+N + KY+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYN 130
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148,
GNAT famil protein structure initiative; 2.15A
{Bacteroides thetaiotaomicron}
Length = 181
Score = 28.0 bits (62), Expect = 2.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 62 PNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQIIDSKNTKRRIRF 105
P R G + L + + L + EV+ + KRRI F
Sbjct: 83 PALRNGGYGKRT--LEHLCEFLKRPIVLEVERPVEEMAKRRINF 124
>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing
endonuclease, hydrolase, intron homing, mitochondrion,
mRNA processing, mRNA splicing; 2.40A {Emericella
nidulans} PDB: 1p8k_Z 3eh8_A 3uvf_A
Length = 254
Score = 26.9 bits (59), Expect = 8.1
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 78 LIIKNLNKHFSFEVQIIDSKNTKRRIRFSNYHSCSKINPFIVTFPICL 125
++I + K+ SF ++ K +++ ++ S I F+ P+ L
Sbjct: 176 ILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKL 223
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 8.7
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 10/31 (32%)
Query: 150 ETLQIK-MHANCRLRRIFFADKLYDSKDIPA 179
E +K + A L KLY PA
Sbjct: 18 EKQALKKLQA--SL-------KLYADDSAPA 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.420
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,245,049
Number of extensions: 245718
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 17
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)