RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14578
         (270 letters)



>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 226

 Score = 28.2 bits (62), Expect = 0.95
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 36  RITDYDLNSLA-LEIISTTVMNTYITCPNYRFKSLGIKLPYLCLIIKNLNKHFSFEVQII 94
           RIT  D+ +L     ++  V+N Y+     R K  G    ++       +  F  +++  
Sbjct: 33  RITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHV------FSTFFYPKLKSG 86

Query: 95  DSKNTKRRIRFSNYHSCSKINPFIVTFPICLNEGWNEVRIDLQDFVYKSYKTLYLETLQI 154
             +  KR  +  N      I       PI     W+ V IDL+    K   ++  +  +I
Sbjct: 87  GYQAVKRWTKGVNLFEQEIIL-----VPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRI 141

Query: 155 KMHANCRLRRIFFADKLYDSKDIPAEYKLFRKEDQ 189
                  L+      +  D   +   +   +  + 
Sbjct: 142 CEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEI 176


>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 224

 Score = 26.2 bits (58), Expect = 3.9
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 46  ALEIISTTVMNTYITCPNYRFKSLGIKLPYLCL-----IIKNLNKHFSFEVQIIDSKNT 99
           A+ I+ TT+  T I          G+ +P          ++N     S ++Q ++ + +
Sbjct: 45  AIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPD-SVKIQRVEERLS 102


>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 225

 Score = 25.4 bits (56), Expect = 7.3
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 45  LALEIISTTVMNTYITCPNYRFKSLGIKLPYLCL-----IIKNLNKHFS--FEVQIIDSK 97
           L  + + T +  + +          G+ LP +        IKN  K  +    V+II SK
Sbjct: 42  LETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSK 101

Query: 98  NT 99
           NT
Sbjct: 102 NT 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,063,220
Number of extensions: 51324
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 10
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)