BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14580
(149 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242008936|ref|XP_002425250.1| DNA ligase, putative [Pediculus humanus corporis]
gi|212508998|gb|EEB12512.1| DNA ligase, putative [Pediculus humanus corporis]
Length = 927
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 82/106 (77%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
MSDKE+ +K F VDRAKTGR+GCKKCKQKI G +R+AK+ YNPFG+G +KQWHHI
Sbjct: 1 MSDKEDEEQPSEKPFHVDRAKTGRAGCKKCKQKISQGELRMAKLAYNPFGTGTIKQWHHI 60
Query: 61 DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLR 106
CI +VFKKQR TT KIE D++GGWD+L DQ+E+++ FP L+
Sbjct: 61 QCIFDVFKKQRATTKKIEHPDEIGGWDNLNENDQQEIINYFPPELQ 106
>gi|193700124|ref|XP_001943689.1| PREDICTED: DNA ligase 3-like [Acyrthosiphon pisum]
Length = 875
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 72/105 (68%)
Query: 9 PEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFK 68
P +DK F +++K+ R+ CKKCK+ ++ G +RIAK+ NPFG GKM WHH C++ VF
Sbjct: 4 PSEDKLFVAEKSKSNRAKCKKCKEVLNQGALRIAKVVANPFGDGKMMAWHHPQCLVTVFS 63
Query: 69 KQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
KQR +TAKI VDD+GGWD L+ E Q E+L FP+ +E K D
Sbjct: 64 KQRASTAKITCVDDIGGWDGLSMEHQNEILMTFPDIPKEKLKTHD 108
>gi|345489172|ref|XP_001601405.2| PREDICTED: DNA ligase 3 [Nasonia vitripennis]
Length = 1031
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 4/104 (3%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
MSD E+ ED+K F V+RAKTGR+ CKKCK I+ VRIAK+ NPFG GKMK WHH+
Sbjct: 1 MSDGEQ---EDEKPFAVERAKTGRAKCKKCKCPIEKDQVRIAKLMANPFGEGKMKAWHHV 57
Query: 61 DCILEVFKKQRQTTAKIE-VVDDMGGWDDLTPEDQEEVLSRFPE 103
C+ EVF +QR TT +IE +D+ GWD L ED++ VL + E
Sbjct: 58 SCLFEVFSRQRATTKRIENPEEDISGWDSLCDEDKDVVLEKLGE 101
>gi|350407883|ref|XP_003488227.1| PREDICTED: DNA ligase 3-like [Bombus impatiens]
Length = 1012
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 91/148 (61%), Gaps = 18/148 (12%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
MSD+E+ E++K F V+RAK+GR+ CKKCK I+ TVRIAK+ NPF GKMK WHH+
Sbjct: 3 MSDEEK---EEEKPFAVERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFSDGKMKAWHHL 59
Query: 61 DCILEVFKKQRQTTAKI-EVVDDMGGWDDLTPEDQEEVLSRF-----------PESLRES 108
C+ EVF +QR TT +I + +D+ GW DL ED+ +L R P++ + +
Sbjct: 60 SCLFEVFARQRATTKRIDDPEEDVSGWQDLCDEDKTAILQRIEEFENSSPFKTPKTTQVA 119
Query: 109 NKDRDVPERKIPSSSEKK---SKTPKKK 133
N+ +RK+ ++E +K P+KK
Sbjct: 120 NQSSGSKKRKLTRTTESDPSPNKKPRKK 147
>gi|340721941|ref|XP_003399371.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3-like [Bombus
terrestris]
Length = 1013
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 72/104 (69%), Gaps = 4/104 (3%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
MSD+E+ E++K F V+RAK+GR+ CKKCK I+ TVRIAK+ NPF GKMK WHH+
Sbjct: 3 MSDEEK---EEEKPFAVERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFSDGKMKAWHHL 59
Query: 61 DCILEVFKKQRQTTAKI-EVVDDMGGWDDLTPEDQEEVLSRFPE 103
C+ EVF +QR TT +I + +D+ GW DL ED+ +L R E
Sbjct: 60 SCLFEVFARQRATTKRIDDPEEDVSGWQDLCDEDKTAILQRIEE 103
>gi|383847368|ref|XP_003699326.1| PREDICTED: DNA ligase 3 [Megachile rotundata]
Length = 979
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 72/104 (69%), Gaps = 5/104 (4%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
MSD E+ ++K F V+RAK+GR+ CKKCK I+ TVRIAK+ NPF GKMK WHH+
Sbjct: 71 MSDDEK----EEKPFAVERAKSGRAKCKKCKCPIEKDTVRIAKLMANPFAEGKMKAWHHL 126
Query: 61 DCILEVFKKQRQTTAKIE-VVDDMGGWDDLTPEDQEEVLSRFPE 103
C+ EVF KQR TT +IE +D+ GW++L ED++ VL + E
Sbjct: 127 SCLFEVFAKQRATTKRIEDPEEDVSGWEELDEEDKKTVLQKLEE 170
>gi|110761354|ref|XP_396537.3| PREDICTED: DNA ligase 3 [Apis mellifera]
Length = 1009
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 18/127 (14%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
+++K F V+RAK+GR+ CKKCK I+ TVRIAK+ NPF GKMK WHH+ C+ EVF K
Sbjct: 4 DEEKPFAVERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFTDGKMKAWHHLTCLFEVFAK 63
Query: 70 QRQTTAKI-EVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSK 128
QR +T +I + +D+ GW+DL+ ED+ VL E ++S K+
Sbjct: 64 QRASTKRIDDPAEDVSGWEDLSKEDRAIVLRMIEEFEKDS-----------------KNH 106
Query: 129 TPKKKAV 135
TPK KAV
Sbjct: 107 TPKGKAV 113
>gi|91076374|ref|XP_967954.1| PREDICTED: similar to rCG33581 [Tribolium castaneum]
gi|270002897|gb|EEZ99344.1| ligase III [Tribolium castaneum]
Length = 853
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 77/127 (60%), Gaps = 8/127 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
+K F V+ AK GR+ CKKCKQK G +RIAK+ NPFG GKMK WHH++C+ EVF KQR
Sbjct: 7 EKPFLVEVAKQGRAVCKKCKQKCAQGELRIAKLVANPFGEGKMKNWHHVNCLFEVFLKQR 66
Query: 72 QTTAKI-EVVDDMGGWDDLTPEDQEEVLSRFPE--SLRESNKD-----RDVPERKIPSSS 123
TT +I + V+D+ GW L E + ++L R E S E+ + P+ PS+S
Sbjct: 67 PTTKRIDDPVEDIDGWVLLDDEQKSDILKRVEECNSFFETKHGVKPSPKKTPQEAKPSTS 126
Query: 124 EKKSKTP 130
K S P
Sbjct: 127 SKDSSGP 133
>gi|189234169|ref|XP_001809442.1| PREDICTED: similar to ligase III, DNA, ATP-dependent [Tribolium
castaneum]
gi|270002458|gb|EEZ98905.1| hypothetical protein TcasGA2_TC004521 [Tribolium castaneum]
Length = 450
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
++K F V+ A+ GR+ CKKC+QK G +RIAK+ NP GSGKMK W+H+ CI E F KQ
Sbjct: 2 EEKPFAVEVARQGRALCKKCRQKCVQGDLRIAKLIPNPLGSGKMKTWYHVSCIFETFLKQ 61
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
RQTT +IE D+ GW+ L P+D+ +L + + RE
Sbjct: 62 RQTTKRIEGPLDIDGWESLDPDDKVNILEKISQCNRE 98
>gi|380019623|ref|XP_003693702.1| PREDICTED: DNA ligase 3-like, partial [Apis florea]
Length = 208
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
+++K F V+RAK+GR+ CKKCK I+ TVRIAK+ NPF GKMK WHH+ C+ EVF +
Sbjct: 4 DEEKPFAVERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFTDGKMKAWHHLTCLFEVFAR 63
Query: 70 QRQTTAKI-EVVDDMGGWDDLTPEDQEEVL 98
QR TT +I + D+ GW+DL+ ED+ VL
Sbjct: 64 QRATTKRIDDPAVDVSGWEDLSEEDKATVL 93
>gi|357621098|gb|EHJ73055.1| hypothetical protein KGM_05634 [Danaus plexippus]
Length = 917
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK-MKQWHHIDCILEVFKKQRQT 73
F+VDRAK GR+ CK CK ++G +RIAK+ +P+G + MK WHH++C++ V KQR T
Sbjct: 7 FYVDRAKVGRANCKGCKAHCESGQLRIAKLVASPYGENQQMKSWHHVNCLMNVLLKQRPT 66
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVL 98
T +I+ +DD+G WD+++ EDQE ++
Sbjct: 67 TKRIDSIDDIGNWDNISKEDQEFII 91
>gi|307214733|gb|EFN89653.1| DNA ligase 3 [Harpegnathos saltator]
Length = 1035
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 2 SDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHID 61
SD EE E DK+F V+RAK+GR+ CKKCK I+ +RI K+ + F M WHH+
Sbjct: 3 SDVEEAEGEQDKSFVVERAKSGRAKCKKCKCTIEKDELRIGKLVVSFFDGKLMPAWHHVT 62
Query: 62 CILEVFKKQRQTTAKIEVVD-DMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIP 120
CI+EVF KQR TT +IE + D+ GW+ L+ ED++ VL + E ER P
Sbjct: 63 CIIEVFAKQRATTKRIEDPEKDVKGWERLSDEDKQLVLDKLEE-----------LERSSP 111
Query: 121 SSSEKKSKTPKKKA 134
+ KK+ T +K A
Sbjct: 112 AKDAKKTATLRKAA 125
>gi|260841228|ref|XP_002613830.1| hypothetical protein BRAFLDRAFT_119901 [Branchiostoma floridae]
gi|229299220|gb|EEN69839.1| hypothetical protein BRAFLDRAFT_119901 [Branchiostoma floridae]
Length = 928
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQRQ 72
F V+ AK GR+GCKKCKQKI+ G RI K+ N F G G+MKQW+H+ CI E F++ R
Sbjct: 13 FCVEYAKQGRAGCKKCKQKIEKGLPRIGKIVPNFFHEGDGEMKQWYHVACIFETFQRARA 72
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS---SSEKKSKT 129
TT KIE D+ GW+D+ E+++ +L + ++E P++K+ S++ K ++
Sbjct: 73 TTKKIEDASDLEGWEDMEDEEKQTIL----KLIKELESKAKSPKKKVVQATLSTKGKIQS 128
Query: 130 PKKKAVA 136
P KKA +
Sbjct: 129 PTKKAAS 135
>gi|241614142|ref|XP_002406581.1| DNA ligase, putative [Ixodes scapularis]
gi|215500833|gb|EEC10327.1| DNA ligase, putative [Ixodes scapularis]
Length = 851
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
D F ++ AK G +GCKKCK KID +RIAK+ NPF G MKQW H+DCI E +
Sbjct: 3 DTRFCIEYAKRGTAGCKKCKAKIDKEVLRIAKIVPNPFSDSGGDMKQWFHVDCIFEQLSR 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVP-ERKIPSSSEKKSK 128
R TT KIE +D+ GW D+ P+D++ VL E ++ P +RK+ S SK
Sbjct: 63 ARATTKKIEEAEDLEGWADVRPDDRKVVLKHIDELTSKAGASGATPNKRKLASPKGSPSK 122
Query: 129 TPK 131
K
Sbjct: 123 KQK 125
>gi|432901473|ref|XP_004076853.1| PREDICTED: DNA ligase 3-like [Oryzias latipes]
Length = 1011
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
D+ F V+ AK G +GCKKCK KI G VRI K+ NPF +G+MK+W+H+ CI E ++
Sbjct: 91 DQRFLVEYAKRGTAGCKKCKDKIQKGIVRIGKIVPNPFSESAGEMKEWYHVKCIFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + D+ GW++L ED+E +
Sbjct: 151 ARATTKKIEDITDLEGWEELQDEDKELI 178
>gi|332020243|gb|EGI60679.1| DNA ligase 3 [Acromyrmex echinatior]
Length = 269
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 13/136 (9%)
Query: 3 DKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK-MKQWHHID 61
D+++ ++K F V+RAKTGR+ CK+CK I+ +RIAK + F GK M WHH+
Sbjct: 5 DEDQQQQGEEKPFTVERAKTGRAKCKRCKCPIEKDEIRIAKYVASFFSDGKLMPAWHHVT 64
Query: 62 CILEVFKKQRQTTAKIE-VVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIP 120
C+ E F KQR +T +IE +D+ GW+ L+ +D++ +L R E E+ P
Sbjct: 65 CLFEAFAKQRASTKRIEDPAEDVKGWEQLSDDDKKVILDRLKEF-----------EKSFP 113
Query: 121 SSSEKKSKTPKKKAVA 136
+ + KK+ TP+K A +
Sbjct: 114 AKTSKKTATPRKAAAS 129
>gi|348531984|ref|XP_003453487.1| PREDICTED: DNA ligase 3 [Oreochromis niloticus]
Length = 1012
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
D+ F V+ AK G +GCKKCK KI G VRI K+ NPF +G+MK+W+H+ CI E ++
Sbjct: 92 DQRFLVEYAKRGTAGCKKCKDKIQKGIVRIGKIVPNPFSESAGEMKEWYHVKCIFEKLER 151
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + D+ GW++L +D+E +
Sbjct: 152 ARATTKKIEDITDLEGWEELQDDDKEII 179
>gi|449479669|ref|XP_004177044.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3 [Taeniopygia guttata]
Length = 896
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ + VD AK G +GCKKCK+KI G VRI K+ NPF G MK+W+H+ CI E K
Sbjct: 3 EQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCIFEKLDK 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESN---KDRDVPERKIPSSSEKK 126
R TT KIE + D+ GW++L E+++ + E+ ++ K + + + K+ ++ +
Sbjct: 63 ARATTKKIEDITDLEGWEELQDEEKDTINKYIAEANSKTGGTPKKKVIVQAKLTATGQLT 122
Query: 127 SKTPKKKAVAY 137
+K P KK +
Sbjct: 123 TKDPPKKFSGF 133
>gi|431890909|gb|ELK01788.1| DNA ligase 3 [Pteropus alecto]
Length = 909
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI CI E ++
Sbjct: 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCIFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 63 ARATTKKIEDLTELEGWEELEDNEKEQI------------------NQHITDLSSKTAST 104
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 105 PKKKAVV 111
>gi|338711026|ref|XP_001501551.3| PREDICTED: DNA ligase 3 [Equus caballus]
Length = 965
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 101 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 160
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 161 ARATTKKIEDITELEGWEELEDNEKEQI------------------SQHIADLSSKAAST 202
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 203 PKKKAVV 209
>gi|355699358|gb|AES01101.1| ligase III, DNA, ATP-dependent [Mustela putorius furo]
Length = 598
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKATGT 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|119600604|gb|EAW80198.1| ligase III, DNA, ATP-dependent, isoform CRA_b [Homo sapiens]
Length = 649
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|417411773|gb|JAA52313.1| Putative atp-dependent dna ligase iii, partial [Desmodus rotundus]
Length = 583
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 20/133 (15%)
Query: 6 EPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCI 63
EP ++ F VD AK +GCKKCK+KI G RI K+ NPF G+MK+W+HI C+
Sbjct: 86 EPCEMAEQRFCVDYAKRSTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGEMKEWYHIKCM 145
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSS 123
E ++ R TT KIE + ++ GW++L ++E++ + I S
Sbjct: 146 FEKLERARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLS 187
Query: 124 EKKSKTPKKKAVA 136
K TPKKKAV
Sbjct: 188 SKAGSTPKKKAVV 200
>gi|410980494|ref|XP_003996612.1| PREDICTED: DNA ligase 3 isoform 3 [Felis catus]
Length = 1022
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKATST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|395849244|ref|XP_003797241.1| PREDICTED: DNA ligase 3 [Otolemur garnettii]
Length = 1008
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 20/132 (15%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 85 PYEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 144
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE 124
E ++ R TT KIE + ++ GW++L ++E++ + I S
Sbjct: 145 EKLERARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSS 186
Query: 125 KKSKTPKKKAVA 136
K + TPKKKAV
Sbjct: 187 KAASTPKKKAVV 198
>gi|410980490|ref|XP_003996610.1| PREDICTED: DNA ligase 3 isoform 1 [Felis catus]
Length = 996
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKATST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|410980492|ref|XP_003996611.1| PREDICTED: DNA ligase 3 isoform 2 [Felis catus]
Length = 1015
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKATST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|410914952|ref|XP_003970951.1| PREDICTED: DNA ligase 3-like [Takifugu rubripes]
Length = 983
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F V+ AK G +GCKKCK KI G VRI K+ NPF +G+MK+W+H+ CI E ++
Sbjct: 62 EQRFLVEYAKRGTAGCKKCKDKIVKGIVRIGKIVPNPFSESAGEMKEWYHVKCIFEKLER 121
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + ++ GW+DL ED++ +
Sbjct: 122 ARATTKKIEDLTELEGWEDLQDEDKDLI 149
>gi|403283357|ref|XP_003933089.1| PREDICTED: DNA ligase 3 isoform 1 [Saimiri boliviensis boliviensis]
Length = 1013
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSETGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAST 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|326931314|ref|XP_003211777.1| PREDICTED: DNA ligase 3-like [Meleagris gallopavo]
Length = 658
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ + VD AK G +GCKKCK+KI G VRI K+ NPF G MK+W+H+ C+ E +K
Sbjct: 3 EQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCMFEKLEK 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + D+ GW++L ++E + + E ++ K T
Sbjct: 63 ARATTKKIEDITDLEGWEELQDAEKELITNLISE------------------AASKAGST 104
Query: 130 PKKKAVA 136
PKKKA
Sbjct: 105 PKKKATV 111
>gi|57525295|ref|NP_001006215.1| DNA ligase 3 [Gallus gallus]
gi|53128173|emb|CAG31277.1| hypothetical protein RCJMB04_4j11 [Gallus gallus]
Length = 902
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ + VD AK G +GCKKCK+KI G VRI K+ NPF G MK+W+H+ C+ E +K
Sbjct: 3 EQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCMFEKLEK 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R +T KIE + D+ GW++L + ++E+++ F I ++ K + T
Sbjct: 63 ARASTKKIEDITDLEGWEELQ-DGEKELITNF-----------------ISEATSKAAST 104
Query: 130 PKKKAVA 136
PKKKA
Sbjct: 105 PKKKATV 111
>gi|47214654|emb|CAG00890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 873
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F V+ AK G +GCKKCK KI G VRI K+ NPF +G+MK+W+H+ CI E ++
Sbjct: 3 EQRFLVEYAKRGTAGCKKCKDKIVKGIVRIGKIVPNPFSESAGEMKEWYHVKCIFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKI 119
R TT KIE + ++ GW++L ED+ + E + + N P++K+
Sbjct: 63 ARATTKKIEDLTELEGWEELQDEDKNLIKEHISELMAKVNAS---PKKKV 109
>gi|402899337|ref|XP_003912656.1| PREDICTED: DNA ligase 3 [Papio anubis]
Length = 1009
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAST 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|403283359|ref|XP_003933090.1| PREDICTED: DNA ligase 3 isoform 2 [Saimiri boliviensis boliviensis]
Length = 954
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSETGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAST 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|351702200|gb|EHB05119.1| DNA ligase 3 [Heterocephalus glaber]
Length = 1013
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDSEKEQI------------------TQHIADLSSKAAST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|355753913|gb|EHH57878.1| DNA ligase 3 [Macaca fascicularis]
Length = 1009
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAST 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|281341925|gb|EFB17509.1| hypothetical protein PANDA_012829 [Ailuropoda melanoleuca]
Length = 1015
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKATGT 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|388452388|ref|NP_001252899.1| DNA ligase 3 [Macaca mulatta]
gi|355568415|gb|EHH24696.1| DNA ligase 3 [Macaca mulatta]
gi|380812704|gb|AFE78226.1| DNA ligase 3 isoform alpha precursor [Macaca mulatta]
gi|383418321|gb|AFH32374.1| DNA ligase 3 isoform alpha precursor [Macaca mulatta]
Length = 1009
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAST 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|291405581|ref|XP_002719277.1| PREDICTED: DNA ligase (ATP) 3 isoform 1 [Oryctolagus cuniculus]
Length = 1012
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHITDLSSKAAST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|291405583|ref|XP_002719278.1| PREDICTED: DNA ligase (ATP) 3 isoform 2 [Oryctolagus cuniculus]
Length = 1011
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHITDLSSKAAST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|296202009|ref|XP_002748408.1| PREDICTED: DNA ligase 3 isoform 2 [Callithrix jacchus]
Length = 954
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAST 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|301776466|ref|XP_002923661.1| PREDICTED: DNA ligase 3-like [Ailuropoda melanoleuca]
Length = 996
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKATGT 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|291405585|ref|XP_002719279.1| PREDICTED: DNA ligase (ATP) 3 isoform 3 [Oryctolagus cuniculus]
Length = 952
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHITDLSSKAAST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|346644723|ref|NP_001231032.1| DNA ligase 3 [Sus scrofa]
Length = 995
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDPEKEQI------------------SQHIADLSSKAAST 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|426348729|ref|XP_004041980.1| PREDICTED: DNA ligase 3 isoform 1 [Gorilla gorilla gorilla]
Length = 1009
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|348567739|ref|XP_003469656.1| PREDICTED: DNA ligase 3-like isoform 1 [Cavia porcellus]
Length = 1010
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 148
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 149 ARATTKKIEDLTELEGWEELEDSEKEQI------------------TQHIADLSSKAAGT 190
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 191 PKKKAVV 197
>gi|19550955|gb|AAL91592.1|AF491645_1 ligase III, DNA, ATP-dependent [Homo sapiens]
gi|1113939|gb|AAA85022.1| DNA ligase III [Homo sapiens]
Length = 862
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 63 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 104
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 105 PKKKAVV 111
>gi|410259054|gb|JAA17493.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 1009
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|410259056|gb|JAA17494.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 949
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|332848014|ref|XP_511409.3| PREDICTED: DNA ligase 3 isoform 2 [Pan troglodytes]
gi|410212976|gb|JAA03707.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
gi|410306904|gb|JAA32052.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 1009
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|73747829|ref|NP_039269.2| DNA ligase 3 isoform alpha precursor [Homo sapiens]
gi|251757259|sp|P49916.2|DNLI3_HUMAN RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName:
Full=Polydeoxyribonucleotide synthase [ATP] 3
gi|45751619|gb|AAH68005.1| Ligase III, DNA, ATP-dependent [Homo sapiens]
gi|119600605|gb|EAW80199.1| ligase III, DNA, ATP-dependent, isoform CRA_c [Homo sapiens]
gi|311346378|gb|ADP89974.1| DNA ligase 3 [Homo sapiens]
gi|311346381|gb|ADP89976.1| DNA ligase 3 [Homo sapiens]
gi|311346384|gb|ADP89978.1| DNA ligase 3 [Homo sapiens]
gi|311346387|gb|ADP89980.1| DNA ligase 3 [Homo sapiens]
gi|311346390|gb|ADP89982.1| DNA ligase 3 [Homo sapiens]
gi|311346393|gb|ADP89984.1| DNA ligase 3 [Homo sapiens]
gi|311346396|gb|ADP89986.1| DNA ligase 3 [Homo sapiens]
gi|311346399|gb|ADP89988.1| DNA ligase 3 [Homo sapiens]
gi|311346402|gb|ADP89990.1| DNA ligase 3 [Homo sapiens]
gi|311346405|gb|ADP89992.1| DNA ligase 3 [Homo sapiens]
gi|311346408|gb|ADP89994.1| DNA ligase 3 [Homo sapiens]
gi|311346411|gb|ADP89996.1| DNA ligase 3 [Homo sapiens]
gi|311346414|gb|ADP89998.1| DNA ligase 3 [Homo sapiens]
gi|311346417|gb|ADP90000.1| DNA ligase 3 [Homo sapiens]
gi|311346420|gb|ADP90002.1| DNA ligase 3 [Homo sapiens]
gi|311346423|gb|ADP90004.1| DNA ligase 3 [Homo sapiens]
gi|311346426|gb|ADP90006.1| DNA ligase 3 [Homo sapiens]
gi|311346429|gb|ADP90008.1| DNA ligase 3 [Homo sapiens]
gi|311346432|gb|ADP90010.1| DNA ligase 3 [Homo sapiens]
gi|311346435|gb|ADP90012.1| DNA ligase 3 [Homo sapiens]
gi|311346438|gb|ADP90014.1| DNA ligase 3 [Homo sapiens]
gi|311346441|gb|ADP90016.1| DNA ligase 3 [Homo sapiens]
gi|311346444|gb|ADP90018.1| DNA ligase 3 [Homo sapiens]
gi|311346447|gb|ADP90020.1| DNA ligase 3 [Homo sapiens]
gi|311346450|gb|ADP90022.1| DNA ligase 3 [Homo sapiens]
gi|311346453|gb|ADP90024.1| DNA ligase 3 [Homo sapiens]
gi|311346456|gb|ADP90026.1| DNA ligase 3 [Homo sapiens]
gi|311346459|gb|ADP90028.1| DNA ligase 3 [Homo sapiens]
gi|311346462|gb|ADP90030.1| DNA ligase 3 [Homo sapiens]
gi|311346465|gb|ADP90032.1| DNA ligase 3 [Homo sapiens]
gi|311346468|gb|ADP90034.1| DNA ligase 3 [Homo sapiens]
gi|311346471|gb|ADP90036.1| DNA ligase 3 [Homo sapiens]
gi|311346474|gb|ADP90038.1| DNA ligase 3 [Homo sapiens]
gi|311346477|gb|ADP90040.1| DNA ligase 3 [Homo sapiens]
gi|311346480|gb|ADP90042.1| DNA ligase 3 [Homo sapiens]
gi|311346483|gb|ADP90044.1| DNA ligase 3 [Homo sapiens]
gi|311346486|gb|ADP90046.1| DNA ligase 3 [Homo sapiens]
gi|311346489|gb|ADP90048.1| DNA ligase 3 [Homo sapiens]
gi|311346492|gb|ADP90050.1| DNA ligase 3 [Homo sapiens]
gi|311346495|gb|ADP90052.1| DNA ligase 3 [Homo sapiens]
Length = 1009
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|410339187|gb|JAA38540.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 1009
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|426348731|ref|XP_004041981.1| PREDICTED: DNA ligase 3 isoform 2 [Gorilla gorilla gorilla]
Length = 949
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|348567743|ref|XP_003469658.1| PREDICTED: DNA ligase 3-like isoform 3 [Cavia porcellus]
Length = 951
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 148
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 149 ARATTKKIEDLTELEGWEELEDSEKEQI------------------TQHIADLSSKAAGT 190
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 191 PKKKAVV 197
>gi|348567741|ref|XP_003469657.1| PREDICTED: DNA ligase 3-like isoform 2 [Cavia porcellus]
Length = 939
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 148
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 149 ARATTKKIEDLTELEGWEELEDSEKEQI------------------TQHIADLSSKAAGT 190
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 191 PKKKAVV 197
>gi|332848016|ref|XP_003315567.1| PREDICTED: DNA ligase 3 isoform 1 [Pan troglodytes]
Length = 949
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|73747844|ref|NP_002302.2| DNA ligase 3 isoform beta precursor [Homo sapiens]
gi|119600603|gb|EAW80197.1| ligase III, DNA, ATP-dependent, isoform CRA_a [Homo sapiens]
gi|311346379|gb|ADP89975.1| DNA ligase 3 [Homo sapiens]
gi|311346382|gb|ADP89977.1| DNA ligase 3 [Homo sapiens]
gi|311346385|gb|ADP89979.1| DNA ligase 3 [Homo sapiens]
gi|311346388|gb|ADP89981.1| DNA ligase 3 [Homo sapiens]
gi|311346391|gb|ADP89983.1| DNA ligase 3 [Homo sapiens]
gi|311346394|gb|ADP89985.1| DNA ligase 3 [Homo sapiens]
gi|311346397|gb|ADP89987.1| DNA ligase 3 [Homo sapiens]
gi|311346400|gb|ADP89989.1| DNA ligase 3 [Homo sapiens]
gi|311346403|gb|ADP89991.1| DNA ligase 3 [Homo sapiens]
gi|311346406|gb|ADP89993.1| DNA ligase 3 [Homo sapiens]
gi|311346409|gb|ADP89995.1| DNA ligase 3 [Homo sapiens]
gi|311346412|gb|ADP89997.1| DNA ligase 3 [Homo sapiens]
gi|311346415|gb|ADP89999.1| DNA ligase 3 [Homo sapiens]
gi|311346418|gb|ADP90001.1| DNA ligase 3 [Homo sapiens]
gi|311346421|gb|ADP90003.1| DNA ligase 3 [Homo sapiens]
gi|311346424|gb|ADP90005.1| DNA ligase 3 [Homo sapiens]
gi|311346427|gb|ADP90007.1| DNA ligase 3 [Homo sapiens]
gi|311346430|gb|ADP90009.1| DNA ligase 3 [Homo sapiens]
gi|311346433|gb|ADP90011.1| DNA ligase 3 [Homo sapiens]
gi|311346436|gb|ADP90013.1| DNA ligase 3 [Homo sapiens]
gi|311346439|gb|ADP90015.1| DNA ligase 3 [Homo sapiens]
gi|311346442|gb|ADP90017.1| DNA ligase 3 [Homo sapiens]
gi|311346445|gb|ADP90019.1| DNA ligase 3 [Homo sapiens]
gi|311346448|gb|ADP90021.1| DNA ligase 3 [Homo sapiens]
gi|311346451|gb|ADP90023.1| DNA ligase 3 [Homo sapiens]
gi|311346454|gb|ADP90025.1| DNA ligase 3 [Homo sapiens]
gi|311346457|gb|ADP90027.1| DNA ligase 3 [Homo sapiens]
gi|311346460|gb|ADP90029.1| DNA ligase 3 [Homo sapiens]
gi|311346463|gb|ADP90031.1| DNA ligase 3 [Homo sapiens]
gi|311346466|gb|ADP90033.1| DNA ligase 3 [Homo sapiens]
gi|311346469|gb|ADP90035.1| DNA ligase 3 [Homo sapiens]
gi|311346472|gb|ADP90037.1| DNA ligase 3 [Homo sapiens]
gi|311346475|gb|ADP90039.1| DNA ligase 3 [Homo sapiens]
gi|311346478|gb|ADP90041.1| DNA ligase 3 [Homo sapiens]
gi|311346481|gb|ADP90043.1| DNA ligase 3 [Homo sapiens]
gi|311346484|gb|ADP90045.1| DNA ligase 3 [Homo sapiens]
gi|311346487|gb|ADP90047.1| DNA ligase 3 [Homo sapiens]
gi|311346490|gb|ADP90049.1| DNA ligase 3 [Homo sapiens]
gi|311346493|gb|ADP90051.1| DNA ligase 3 [Homo sapiens]
gi|311346496|gb|ADP90053.1| DNA ligase 3 [Homo sapiens]
Length = 949
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|14290516|gb|AAH09026.1| LIG3 protein [Homo sapiens]
Length = 299
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 20/132 (15%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 85 PCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 144
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE 124
E ++ R TT KIE + ++ GW++L ++E++ + I S
Sbjct: 145 EKLERARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSS 186
Query: 125 KKSKTPKKKAVA 136
K + TPKKKAV
Sbjct: 187 KAAGTPKKKAVV 198
>gi|860963|emb|CAA59230.1| DNA ligase III [Homo sapiens]
Length = 922
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 63 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 104
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 105 PKKKAVV 111
>gi|297700534|ref|XP_002827302.1| PREDICTED: DNA ligase 3 isoform 2 [Pongo abelii]
Length = 1009
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|297700536|ref|XP_002827303.1| PREDICTED: DNA ligase 3 isoform 3 [Pongo abelii]
Length = 949
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>gi|345805757|ref|XP_548265.3| PREDICTED: DNA ligase 3 [Canis lupus familiaris]
Length = 1001
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+H+ C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHVKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKATGT 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|444720955|gb|ELW61715.1| DNA ligase 3 [Tupaia chinensis]
Length = 926
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT +IE + ++ GW++L ++E++ + I S K + T
Sbjct: 63 ARATTKRIEDLTELEGWEELEDNEKEQI------------------NQHIADLSSKATGT 104
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 105 PKKKAVV 111
>gi|344285688|ref|XP_003414592.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3-like [Loxodonta
africana]
Length = 1014
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S + + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSRVAST 192
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 193 PKKKAVV 199
>gi|157880447|pdb|1UW0|A Chain A, Solution Structure Of The Zinc-Finger Domain From Dna
Ligase Iiia
Length = 117
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 20/126 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ I S K + T
Sbjct: 63 ARATTKKIEDLTELEGWEELEDNEKEQITQH------------------IADLSSKAAGT 104
Query: 130 PKKKAV 135
PKKKAV
Sbjct: 105 PKKKAV 110
>gi|307184383|gb|EFN70797.1| DNA ligase 3 [Camponotus floridanus]
Length = 925
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK-MKQWHHIDCILEVFKKQR 71
K F V+RAKTGR+ CK+CK I+ G +RI K + F GK M WHH+ C+ + F KQR
Sbjct: 16 KPFAVERAKTGRAKCKRCKCVIEKGEIRIGKYVTSFFADGKLMPAWHHVTCLFDAFAKQR 75
Query: 72 QTTAKI-EVVDDMGGWDDLTPEDQEEVLSRFPESLRES----NKDRDVPERKIPSSSEKK 126
TT +I + +D+ GW+ L+ +D+ +L++ E + +K P + PSSS
Sbjct: 76 ATTKRIDDPAEDVKGWELLSDDDKTVILNKLEEFEKSCPTKISKKTTSPRKTAPSSSTTS 135
Query: 127 SKTPKKK 133
KT +KK
Sbjct: 136 EKTMEKK 142
>gi|156375378|ref|XP_001630058.1| predicted protein [Nematostella vectensis]
gi|156217071|gb|EDO37995.1| predicted protein [Nematostella vectensis]
Length = 894
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVF 67
ED K+F V+ A GR+ CK CK++I+ + RIAK+ NPF G MKQW+H+ CI + F
Sbjct: 3 EDLKSFLVEYAPQGRAKCKGCKEQIEKSSARIAKLAPNPFSEDGGLMKQWYHVKCIFDSF 62
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ R TT KIE +D+ G+ D+ +DQ +
Sbjct: 63 SRARATTKKIEDAEDLDGFVDMKQDDQNTI 92
>gi|354466767|ref|XP_003495844.1| PREDICTED: DNA ligase 3 isoform 1 [Cricetulus griseus]
Length = 942
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 20/132 (15%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF +G MK+W+H+ CI
Sbjct: 86 PYEMAEQRFCVDYAKRGTAGCKKCKEKILKGVCRIGKVVPNPFSESAGDMKEWYHVKCIF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE 124
E ++ R TT KIE + ++ GW++L +++E++ + I S
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDDEKEQI------------------SQHIADLSS 187
Query: 125 KKSKTPKKKAVA 136
K + TPKKK
Sbjct: 188 KAAGTPKKKTAV 199
>gi|149053630|gb|EDM05447.1| rCG33581, isoform CRA_b [Rattus norvegicus]
Length = 1015
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKTAAT 192
Query: 130 PKKKAVA 136
PKKKA
Sbjct: 193 PKKKATV 199
>gi|354466771|ref|XP_003495846.1| PREDICTED: DNA ligase 3 isoform 3 [Cricetulus griseus]
Length = 955
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 20/132 (15%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF +G MK+W+H+ CI
Sbjct: 86 PYEMAEQRFCVDYAKRGTAGCKKCKEKILKGVCRIGKVVPNPFSESAGDMKEWYHVKCIF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE 124
E ++ R TT KIE + ++ GW++L +++E++ + I S
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDDEKEQI------------------SQHIADLSS 187
Query: 125 KKSKTPKKKAVA 136
K + TPKKK
Sbjct: 188 KAAGTPKKKTAV 199
>gi|68533696|gb|AAH98869.1| Zgc:112973 [Danio rerio]
Length = 752
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK KI G VRI K+ NPF +G+MK+W+H+ CI E ++
Sbjct: 3 EQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGKIVPNPFSESAGEMKEWYHVKCIFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L E D+D+ + + + K + T
Sbjct: 63 ARATTKKIEDITELEGWEELQDE------------------DKDLINKHVSELAAKVNST 104
Query: 130 PKKKAVA 136
PKKK A
Sbjct: 105 PKKKVQA 111
>gi|354466769|ref|XP_003495845.1| PREDICTED: DNA ligase 3 isoform 2 [Cricetulus griseus]
gi|344238283|gb|EGV94386.1| DNA ligase 3 [Cricetulus griseus]
Length = 1014
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 20/132 (15%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF +G MK+W+H+ CI
Sbjct: 86 PYEMAEQRFCVDYAKRGTAGCKKCKEKILKGVCRIGKVVPNPFSESAGDMKEWYHVKCIF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE 124
E ++ R TT KIE + ++ GW++L +++E++ + I S
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDDEKEQI------------------SQHIADLSS 187
Query: 125 KKSKTPKKKAVA 136
K + TPKKK
Sbjct: 188 KAAGTPKKKTAV 199
>gi|58865590|ref|NP_001012011.1| DNA ligase 3 [Rattus norvegicus]
gi|55249814|gb|AAH85959.1| Ligase III, DNA, ATP-dependent [Rattus norvegicus]
Length = 943
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKTAAT 192
Query: 130 PKKKAVA 136
PKKKA
Sbjct: 193 PKKKATV 199
>gi|149053629|gb|EDM05446.1| rCG33581, isoform CRA_a [Rattus norvegicus]
Length = 956
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI------------------SQHIADLSSKTAAT 192
Query: 130 PKKKAVA 136
PKKKA
Sbjct: 193 PKKKATV 199
>gi|441677235|ref|XP_003278419.2| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3 [Nomascus leucogenys]
Length = 1007
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSEAGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R +T KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARASTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKA+
Sbjct: 192 PKKKAIV 198
>gi|18029884|gb|AAL56553.1|AF393655_1 DNA ligase III isoform beta [Xenopus laevis]
Length = 906
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK+KI G VRI K+ NPF +G MK+W+HI C+ E ++
Sbjct: 58 EQRYCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLER 117
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS----SSEK 125
R TT KI+ + D+ GW +L D+E + E + K P +K PS S
Sbjct: 118 ARATTKKIDDLTDLEGWQELQDCDKELINQHVTEL---ATKTAATPRKKTPSKGNQSMAA 174
Query: 126 KSKTPKK 132
+ TP K
Sbjct: 175 QGTTPTK 181
>gi|408440830|ref|NP_001025345.2| DNA ligase 3 [Danio rerio]
Length = 1011
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK KI G VRI K+ NPF +G+MK+W+H+ CI E ++
Sbjct: 89 EQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGKIVPNPFSESAGEMKEWYHVKCIFEKLER 148
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L E D+D+ + + + K + T
Sbjct: 149 ARATTKKIEDITELEGWEELQDE------------------DKDLINKHVSELAAKVNST 190
Query: 130 PKKKAVA 136
PKKK A
Sbjct: 191 PKKKVQA 197
>gi|147901021|ref|NP_001082183.1| ligase III, DNA, ATP-dependent [Xenopus laevis]
gi|18029882|gb|AAL56552.1|AF393654_1 DNA ligase III isoform alpha [Xenopus laevis]
Length = 988
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK+KI G VRI K+ NPF +G MK+W+HI C+ E ++
Sbjct: 58 EQRYCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLER 117
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS----SSEK 125
R TT KI+ + D+ GW +L D+E + E + K P +K PS S
Sbjct: 118 ARATTKKIDDLTDLEGWQELQDCDKELINQHVTEL---ATKTAATPRKKTPSKGNQSMAA 174
Query: 126 KSKTPKK 132
+ TP K
Sbjct: 175 QGTTPTK 181
>gi|47506906|gb|AAH70993.1| LOC398275 protein [Xenopus laevis]
Length = 933
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK+KI G VRI K+ NPF +G MK+W+HI C+ E ++
Sbjct: 3 EQRYCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS----SSEK 125
R TT KI+ + D+ GW +L D+E + E + K P +K PS S
Sbjct: 63 ARATTKKIDDLTDLEGWQELQDCDKELINQHVTEL---ATKTAATPRKKTPSKGNQSMAA 119
Query: 126 KSKTPKK 132
+ TP K
Sbjct: 120 QGTTPTK 126
>gi|74191265|dbj|BAE39460.1| unnamed protein product [Mus musculus]
Length = 431
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|1794221|gb|AAC53003.1| DNA ligase III-beta [Mus musculus]
Length = 956
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|1794223|gb|AAC53004.1| DNA ligase III-alpha [Mus musculus]
Length = 1015
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|148683723|gb|EDL15670.1| ligase III, DNA, ATP-dependent, isoform CRA_b [Mus musculus]
Length = 953
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|74217593|dbj|BAE33548.1| unnamed protein product [Mus musculus]
Length = 1011
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSVSGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|341940451|sp|P97386.2|DNLI3_MOUSE RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName:
Full=Polydeoxyribonucleotide synthase [ATP] 3
Length = 1015
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|74151892|dbj|BAE29732.1| unnamed protein product [Mus musculus]
Length = 1011
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|71061470|ref|NP_034846.2| DNA ligase 3 [Mus musculus]
gi|29165722|gb|AAH49240.1| Ligase III, DNA, ATP-dependent [Mus musculus]
gi|53733359|gb|AAH83500.1| Ligase III, DNA, ATP-dependent [Mus musculus]
gi|74138035|dbj|BAE25421.1| unnamed protein product [Mus musculus]
gi|148683722|gb|EDL15669.1| ligase III, DNA, ATP-dependent, isoform CRA_a [Mus musculus]
Length = 1012
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>gi|334324598|ref|XP_001373823.2| PREDICTED: DNA ligase 3 [Monodelphis domestica]
Length = 1217
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + VD AK G +GCKKCK+KI GT RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 92 EQRYCVDYAKRGTAGCKKCKEKIVKGTCRIGKVMPNPFSESGGDMKEWYHIKCMFEKLER 151
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L +++++ I + S K + T
Sbjct: 152 ARATTKKIEDLTELEGWEELQDAEKDQI------------------NEHIAALSSKAAST 193
Query: 130 PKKKAVA 136
P K+A
Sbjct: 194 PTKRATV 200
>gi|282165841|ref|NP_001016351.2| DNA ligase (ATP) 3 [Xenopus (Silurana) tropicalis]
gi|195539958|gb|AAI67946.1| Unknown (protein for MGC:136050) [Xenopus (Silurana) tropicalis]
Length = 893
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK+KI G VRI K+ NPF +G MK+W+HI C+ E ++
Sbjct: 58 EQRYCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLER 117
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS 121
R TT KI+ + ++ GW +L D+ + E + K P +K PS
Sbjct: 118 ARATTKKIDDLTELEGWQELQDCDKNLISQHVTEL---ATKTAATPRKKTPS 166
>gi|167522421|ref|XP_001745548.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775897|gb|EDQ89519.1| predicted protein [Monosiga brevicollis MX1]
Length = 1132
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG-SGKMKQWHHIDCILEVFKKQRQT 73
F + AKTGRSGCK+CKQKID G +RI K+ +PF M W+H +C + + R+T
Sbjct: 81 FVAEHAKTGRSGCKECKQKIDKGALRIGKVTTSPFSDDSDMTTWYHDECFFQAQLRSRKT 140
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEV 97
TAK+E + D+ + +L+ ED++ +
Sbjct: 141 TAKVETLSDIKNYAELSAEDKQSL 164
>gi|405958255|gb|EKC24400.1| DNA ligase 3 [Crassostrea gigas]
Length = 878
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKKQRQ 72
+ AK G S CKKCKQKID G +RI K+ NPF G MKQW+H C+ E K+ R
Sbjct: 6 YTTGYAKLGTSSCKKCKQKIDKGGLRIGKVVSNPFSDEGGDMKQWYHPQCMFETLKRARA 65
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKK 132
TT KIE DD+ G+ ++ D++ + E S+ K P S++KK+ T K
Sbjct: 66 TTKKIEEPDDLEGFTEIEQSDKDLINKLIKEFATHSS-------TKSPGSAKKKA-TSKV 117
Query: 133 KAVAYF 138
+A F
Sbjct: 118 QATLPF 123
>gi|391345556|ref|XP_003747051.1| PREDICTED: DNA ligase 3 [Metaseiulus occidentalis]
Length = 900
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 11/135 (8%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVF 67
E K F + A G +GCKKCK KI+ G +RI ++ NPF G+MK+W H+ CI +V
Sbjct: 4 ETGKKFCAEYAARGTAGCKKCKTKIEKGLLRIGRIVPNPFSDAGGEMKEWFHVACIFDVL 63
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE-----SNKDRDVPERKIP-- 120
+ R TT +E +D+ G+ +L ED++ + + E L+E K + P ++ P
Sbjct: 64 SRARATTKVVEEAEDIDGFSELKVEDRKLINEKIDE-LQELVQAKRAKTKGTPTKQSPNP 122
Query: 121 -SSSEKKSKTPKKKA 134
+SS KK T + A
Sbjct: 123 KASSTKKESTAVENA 137
>gi|390365532|ref|XP_786357.3| PREDICTED: DNA ligase 3 [Strongylocentrotus purpuratus]
Length = 974
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVF 67
+D+K+F VD A+ G S CKKCKQ I+ + RIAK+ NPF MK + HI+C+ E F
Sbjct: 101 DDEKSFMVDYARLGTSKCKKCKQGIEKKSPRIAKLSTNPFSDDGSMMKNYFHINCVFETF 160
Query: 68 KKQRQTTAKIEVVDDMGGW-------DDLTPEDQEEVLSR 100
+ R TT KIE D+ G+ L ++ EE+LSR
Sbjct: 161 VRARATTKKIEDPSDLDGFEKMEEEEKKLIRKNIEELLSR 200
>gi|213625719|gb|AAI71190.1| ligase III, DNA, ATP-dependent [Xenopus (Silurana) tropicalis]
gi|213626103|gb|AAI71192.1| ligase III, DNA, ATP-dependent [Xenopus (Silurana) tropicalis]
Length = 111
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK+KI G VRI K+ NPF +G MK+W+HI C+ E ++
Sbjct: 3 EQRYCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KI+ + ++ GW +L D+ +
Sbjct: 63 ARATTKKIDDLTELEGWQELQDCDKNLI 90
>gi|395536076|ref|XP_003770046.1| PREDICTED: DNA ligase 3 [Sarcophilus harrisii]
Length = 1003
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + VD AK G + CKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 88 EQRYCVDYAKRGTASCKKCKEKIVKGMCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 147
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L +++++ I + S K + T
Sbjct: 148 ARATTKKIEDLTELEGWEELQDPEKDQI------------------SELIAALSSKAAST 189
Query: 130 PKKKAVA 136
P K+A
Sbjct: 190 PTKRATV 196
>gi|345314427|ref|XP_001516858.2| PREDICTED: DNA ligase 3-like, partial [Ornithorhynchus anatinus]
Length = 235
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ + VD AK G +GCKKCK KI G RI K+ NPF G MK+W+H+ C+ E ++
Sbjct: 30 EQRYCVDYAKRGTAGCKKCKDKIAKGACRIGKVVPNPFSESGGDMKEWYHVRCVFEKLER 89
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R T KIE + ++ GW++L R PE R + + + K + T
Sbjct: 90 ARAATKKIEDLTELEGWEEL----------REPE--------RGHIRQLVADLASKTAGT 131
Query: 130 PKKKAV 135
PKKKA
Sbjct: 132 PKKKAT 137
>gi|93003248|tpd|FAA00207.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 859
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFK 68
D F D K +S CKKCK+ I+ G+ RIAK N F G G+MKQ+HHI C+ E F
Sbjct: 8 DSTRFTCDYGKR-KSNCKKCKKPIEKGSPRIAKCVPNYFNDGDGEMKQYHHIPCMFETFV 66
Query: 69 KQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
K R TT KIE V D+ G+ D+ E+++E+
Sbjct: 67 KARATTKKIEDVSDLDGFADMKDEEKDEI 95
>gi|198417566|ref|XP_002129234.1| PREDICTED: Zn-finger (NAD(+) ADP-ribosyltransferase)-2 [Ciona
intestinalis]
Length = 854
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFK 68
D F D K +S CKKCK+ I+ G+ RIAK N F G G+MKQ+HHI C+ E F
Sbjct: 3 DSTRFTCDYGKR-KSNCKKCKKPIEKGSPRIAKCVPNYFNDGDGEMKQYHHIPCMFETFV 61
Query: 69 KQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
K R TT KIE V D+ G+ D+ E+++E+
Sbjct: 62 KARATTKKIEDVSDLDGFADMKDEEKDEI 90
>gi|340371652|ref|XP_003384359.1| PREDICTED: DNA ligase 3 [Amphimedon queenslandica]
Length = 968
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKKQRQ 72
+ V+ A TGRS CKKCK KI+ G RI K+ NPF G MK W+H C+ E ++ R
Sbjct: 7 YCVEYATTGRSSCKKCKSKIEKGVCRIGKITPNPFSDDGGDMKVWYHSRCMFETLQRARA 66
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEV 97
TT KIE D+ G+ +L +++E+
Sbjct: 67 TTKKIESPADLEGFSNLKDPEKDEI 91
>gi|322785609|gb|EFZ12264.1| hypothetical protein SINV_07494 [Solenopsis invicta]
Length = 124
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK-MKQWHHIDCILEVFKKQR 71
K F V+RAKTGR+ CK+CK ++ +RI K + F GK M WHH+ C+ E F KQR
Sbjct: 16 KPFVVERAKTGRAKCKRCKCPLEKDEIRIGKYVASFFSDGKLMPAWHHVTCMFEAFAKQR 75
Query: 72 QTTAKI-EVVDDMGGWDDLTPEDQEEVLSRF 101
+T +I + +D+ GW+ L+ +D++ +L +
Sbjct: 76 ASTKRIDDPAEDVKGWEQLSDDDKKIILDKL 106
>gi|440799962|gb|ELR21005.1| Poly(ADPribose) polymerase and DNA-Ligase Zn-finger region domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 231
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 14 NFWVDRAKTGRSGCKK--CKQK-IDTGTVRIAKMGYNPFGSGKMKQ-WHHIDCILEVFKK 69
+ V+ AKTGR+ CK CK+K I+ +VR+ K+ NPF G K W H+ CI + +
Sbjct: 5 TYVVEYAKTGRASCKNKPCKKKTIEKDSVRVGKVSPNPFSEGDTKTDWFHLSCIFDQLSR 64
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R +T KIE DD+ G+DDL +DQ+ V
Sbjct: 65 ARASTKKIESTDDLEGFDDLKKKDQQRV 92
>gi|326498483|dbj|BAJ98669.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 937
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQ 70
D F +D AK G SGCKKCK KI G +RIAK+ +PF G MK +HH+ CI E F
Sbjct: 3 DNRFSIDYAKLGTSGCKKCKAKIAKGELRIAKITPSPFSEGDTMKVYHHVPCIFETFLNA 62
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
R TT I+ D+ GW +++P D+E +L + ++
Sbjct: 63 RATTKIIDSSTDLDGWSNISPADREIILEQIKQT 96
>gi|426238631|ref|XP_004013253.1| PREDICTED: DNA ligase 3 [Ovis aries]
Length = 885
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSEAGGDMKEWYHIKCMFEKLER 148
Query: 70 QRQTTAKIE 78
R TT KIE
Sbjct: 149 ARATTKKIE 157
>gi|296477017|tpg|DAA19132.1| TPA: DNA ligase (ATP) 3 [Bos taurus]
Length = 943
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 148
Query: 70 QRQTTAKIE 78
R TT KIE
Sbjct: 149 ARATTKKIE 157
>gi|440902828|gb|ELR53569.1| DNA ligase 3 [Bos grunniens mutus]
Length = 1002
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 148
Query: 70 QRQTTAKIE 78
R TT KIE
Sbjct: 149 ARATTKKIE 157
>gi|110331839|gb|ABG67025.1| ligase III, DNA, ATP-dependent precursor [Bos taurus]
Length = 321
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 84 PCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 143
Query: 65 EVFKKQRQTTAKIE 78
E ++ R TT KIE
Sbjct: 144 EKLERARATTKKIE 157
>gi|442760155|gb|JAA72236.1| Putative atp-dependent dna ligase iii [Ixodes ricinus]
Length = 146
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
D F ++ AK G +GCKKCK KID +RIAK+ NPF G MKQW H+DCI E +
Sbjct: 3 DTRFCIEYAKRGTAGCKKCKAKIDKEVLRIAKIVPNPFSDSGGDMKQWFHVDCIFEQLSR 62
Query: 70 QRQTT 74
R TT
Sbjct: 63 ARATT 67
>gi|326435431|gb|EGD81001.1| ligase III [Salpingoeca sp. ATCC 50818]
Length = 1246
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG-SGKMKQWHHIDCILEVFKKQRQ 72
F ++ AKTGRSGCK+CKQKID +RI K+ + F M W H+ C + + R
Sbjct: 150 TFQIEGAKTGRSGCKECKQKIDKDVLRIGKVTPSAFSDDATMTSWFHVPCFFKAQMRSRA 209
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEV 97
TT K+E D+ G+ L+ +D+ V
Sbjct: 210 TTTKLEDPADLEGFYSLSEDDRRSV 234
>gi|196007104|ref|XP_002113418.1| hypothetical protein TRIADDRAFT_57566 [Trichoplax adhaerens]
gi|190583822|gb|EDV23892.1| hypothetical protein TRIADDRAFT_57566 [Trichoplax adhaerens]
Length = 823
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG-SGK-MKQWHHIDCILEVFKKQRQ 72
F + ++GR+ CK CKQK++ +RIAK+ NPFG +G+ MKQWHH CI F + R
Sbjct: 5 FLAEYDRSGRASCKGCKQKLEKKALRIAKVVENPFGDTGETMKQWHHPKCIFNSFIRARP 64
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
T I+ V D+ G+DDL +DQE V + L+E
Sbjct: 65 ATKIIQTVADIDGYDDLEDDDQESVSQMITDCLKE 99
>gi|156546731|ref|XP_001604917.1| PREDICTED: poly [ADP-ribose] polymerase-like [Nasonia vitripennis]
Length = 999
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
DD F V+ +KTGR+GCK CK I ++RIA + +PF GKM +WHH +C F+KQ
Sbjct: 3 DDLPFRVEYSKTGRAGCKVCKSPIAKESLRIATVVQSPFHDGKMVKWHHANCF---FQKQ 59
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPE 103
R T ++ +D + EDQE + + E
Sbjct: 60 RPKTT-----GEIAHFDSIRWEDQEAIRKQIEE 87
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQR 71
F V+ AK+ RS CK C I T R++K + + G +++WHH+DC F K R
Sbjct: 128 FKVEYAKSSRSTCKGCGMAIMIHTTRLSKKDFESKEARRFGGLERWHHLDC----FDKLR 183
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
+ +V ++ G D LT ED+E++ P
Sbjct: 184 KEFQFFDVGTNIPGADTLTKEDKEDLEKYLP 214
>gi|345483040|ref|XP_003424731.1| PREDICTED: poly [ADP-ribose] polymerase isoform 2 [Nasonia
vitripennis]
Length = 992
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
DD + V+ +K+GR+ CK C + I+ G +RIA + +PF GK+++WHH +C FKKQ
Sbjct: 3 DDLPYRVEYSKSGRAKCKVCNENIEKGILRIATVVQSPFHDGKLERWHHSNCF---FKKQ 59
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
R T D+ +D + EDQE + E+
Sbjct: 60 RPKT-----TGDIAHFDSIRWEDQELIKKNIAEA 88
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKK 69
K+F V+ AK+ RS C+ C++ I G +R++K Y + G + +WHH DC F K
Sbjct: 116 KDFKVEYAKSNRSKCRGCEETIIKGEMRLSKKDYESEEARKFGGLDRWHHFDC----FVK 171
Query: 70 QRQTTAKIEVVDDMGGWDDLT 90
R +V ++ G D LT
Sbjct: 172 LRSELQYFDVGTNIPGVDALT 192
>gi|84000185|ref|NP_001033196.1| DNA ligase 3 [Bos taurus]
gi|83406113|gb|AAI11208.1| Ligase III, DNA, ATP-dependent [Bos taurus]
Length = 943
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKQER 148
Query: 70 QRQTTAKIE 78
TT KIE
Sbjct: 149 APATTKKIE 157
>gi|345483042|ref|XP_001604797.2| PREDICTED: poly [ADP-ribose] polymerase isoform 1 [Nasonia
vitripennis]
Length = 990
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
DD + V+ +K+GR+ CK C + I+ G +RIA + +PF GK+++WHH +C FKKQ
Sbjct: 3 DDLPYRVEYSKSGRAKCKVCNENIEKGILRIATVVQSPFHDGKLERWHHSNCF---FKKQ 59
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R T D+ +D + EDQE +
Sbjct: 60 RPKT-----TGDIAHFDSIRWEDQELI 81
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKK 69
K+F V+ AK+ RS C+ C++ I G +R++K Y + G + +WHH DC F K
Sbjct: 114 KDFKVEYAKSNRSKCRGCEETIIKGEMRLSKKDYESEEARKFGGLDRWHHFDC----FVK 169
Query: 70 QRQTTAKIEVVDDMGGWDDLT 90
R +V ++ G D LT
Sbjct: 170 LRSELQYFDVGTNIPGVDALT 190
>gi|66802188|ref|XP_629877.1| SMAD/FHA domain-containing protein [Dictyostelium discoideum AX4]
gi|60463274|gb|EAL61466.1| SMAD/FHA domain-containing protein [Dictyostelium discoideum AX4]
Length = 895
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 12/100 (12%)
Query: 12 DKNFWVDRAKTGRSGCK--KCKQKIDTGTVRIAKMGYNPFGS------GKMKQWHHIDCI 63
+ + ++ A TGRS CK KCK++I+ G VRI + F S G W H +C
Sbjct: 3 NNTYRIEYASTGRSSCKQAKCKKQIEKGAVRIGAI----FPSERFETDGVGTDWFHPNCF 58
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPE 103
E KK R+TT K++ +DD+ G+DDL+ DQ+ + S+ E
Sbjct: 59 FEKQKKARKTTKKVDDIDDLIGFDDLSKSDQKNIKSKVEE 98
>gi|270004381|gb|EFA00829.1| hypothetical protein TcasGA2_TC003717 [Tribolium castaneum]
Length = 956
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D + + AK+GRS C+ CK I GTVR+A M +PF G M WHH+ C F KQR
Sbjct: 2 DLPYRAEYAKSGRSNCRGCKSPIGQGTVRLAVMVQSPFHDGMMPNWHHLHCF---FNKQR 58
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ DD+ ++ L EDQE +
Sbjct: 59 PKSE-----DDIYHFETLRLEDQEII 79
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP-----FGSGKMKQWHHIDCILEVF 67
K+F ++ AK+GR+ C+ C+QKI +RI+K + +G M WHH+ C F
Sbjct: 114 KDFKIEYAKSGRAACRGCEQKILKDEIRISKKDFETDIGKKYGGQDM--WHHVTC----F 167
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERK 118
+ R E D + G+ L EDQ E P + K DVP+ K
Sbjct: 168 AQLRAELGYFESADQLPGFKSLKKEDQAETKKALP-----AIKQEDVPDVK 213
>gi|393906039|gb|EJD74156.1| DNA ligase [Loa loa]
Length = 840
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 20/131 (15%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-----GKMKQWHHIDCILEVFKK 69
F +D AK + CKKC+Q++ G +R+ +M NPF + +MK + HIDC+ E +
Sbjct: 5 FGLDYAKR-VAKCKKCQQQLLKGDLRMWRMVPNPFTADSGNPTEMKNYFHIDCLFETLTR 63
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEK---- 125
R TT I+ DD+ GWD +D+ ++ + RD+ E ++ +K
Sbjct: 64 SRATTKVIDSPDDIEGWDVANDDDKASIIEKI----------RDLSELRLKKFGDKVKTS 113
Query: 126 KSKTPKKKAVA 136
SK KKAVA
Sbjct: 114 ASKDTLKKAVA 124
>gi|348524787|ref|XP_003449904.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Oreochromis
niloticus]
Length = 1014
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
+ ++DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ WHH C +
Sbjct: 3 DSQEDKLYRVEYAKSGRASCKKCKENIAKDSLRMAIMVQSPMFDGKVPHWHHFSCFWQ-- 60
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ Q+TA D+ G+ DL +DQ++V
Sbjct: 61 RASAQSTA------DIAGFSDLRWDDQQKV 84
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCIL----EVF 67
+F V+ AK+ RS CK C+QKI+ +R++K +P G + +W+H C + E+
Sbjct: 112 DFAVEYAKSNRSTCKGCEQKIEKDQIRVSKKTVDPEKPQLGLIDRWYHTACFVSRREELV 171
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
K + A+++ G++ L ED+EE+ R P E + D
Sbjct: 172 FKPEYSAAQLK------GFNALRAEDKEELKKRLPAVKSEGKRKTD 211
>gi|312077700|ref|XP_003141419.1| hypothetical protein LOAG_05834 [Loa loa]
Length = 268
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 20/131 (15%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-----GKMKQWHHIDCILEVFKK 69
F +D AK + CKKC+Q++ G +R+ +M NPF + +MK + HIDC+ E +
Sbjct: 5 FGLDYAKRV-AKCKKCQQQLLKGDLRMWRMVPNPFTADSGNPTEMKNYFHIDCLFETLTR 63
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEK---- 125
R TT I+ DD+ GWD +D+ ++ + RD+ E ++ +K
Sbjct: 64 SRATTKVIDSPDDIEGWDVANDDDKASIIEKI----------RDLSELRLKKFGDKVKTS 113
Query: 126 KSKTPKKKAVA 136
SK KKAVA
Sbjct: 114 ASKDTLKKAVA 124
>gi|357617199|gb|EHJ70647.1| poly [Danaus plexippus]
Length = 990
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D + V+ AKTGR+ CK CK KID G +RIA M + F GK WHH +C FKK+
Sbjct: 3 DLPYQVEYAKTGRASCKACKAKIDQGDLRIAIMVQSAFHDGKQPNWHHEECF---FKKKC 59
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
E + D+ ++ L EDQ+ + S+
Sbjct: 60 P-----ENISDIANFNKLKNEDQKRIKSKL 84
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP-FGSGKMKQWHHIDCILEVFKKQRQ 72
N+ ++ AK+ R+ CK C KI VR++KMGY+P +G M WHH+ C F +++
Sbjct: 117 NYSIEYAKSSRATCKHCDIKICKDEVRVSKMGYDPKYGDHPM--WHHVKC----FAERQS 170
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ L EDQ V
Sbjct: 171 EFLFFAGGEEIPGFKTLKKEDQNMV 195
>gi|432945297|ref|XP_004083528.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Oryzias latipes]
Length = 1015
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
+ ++DK F + AK+G++ CKKCK+KI ++R+A + +P GK+ WHH C
Sbjct: 3 DSQNDKLFRAEYAKSGQASCKKCKEKIAKDSLRMAIVVQSPMFDGKVPHWHHFSCFW--- 59
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
QR A ++ D+GG+ DL DQE V
Sbjct: 60 --QR---ASVQSTADVGGFSDLRWADQEAV 84
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCIL----EVF 67
+F V+ AK+ RS CK C+QKI+ +R++K + G + +W+H C + E+
Sbjct: 113 DFAVEYAKSNRSTCKGCQQKIEKDQIRVSKKVVDAEKPQLGLIDRWYHTACFVSRREELA 172
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
K + A+++ G++ L ED+EE+ R P E + D
Sbjct: 173 FKPDYSAAQLK------GFNVLRAEDKEELKKRLPAVKTEGKRPGD 212
>gi|294461630|gb|ADE76375.1| unknown [Picea sitchensis]
Length = 395
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 5 EEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64
E PNP K + V+ AK+ RS CK CKQ I G++RIAKM G M W+H++CIL
Sbjct: 2 ENPNP-TGKPWKVEYAKSSRSSCKTCKQPIGKGSLRIAKMVAARQFEGVMPIWNHVECIL 60
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+ + +DD+ G D L EDQ+++ F
Sbjct: 61 KY-------PGQFRTIDDVEGLDILESEDQKKIKKYF 90
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 24 RSGCKKCKQKIDTGTVRIAKMG--YNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVD 81
R+ CK C QKI G +RI+ M NP+ G + W H C LE+ T+ IE
Sbjct: 121 RATCKSCNQKIAKGEIRISTMADPENPWFRGTVAVWRHAKCFLEI----GWWTSPIE--- 173
Query: 82 DMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSS 123
+M GW+ L+PED+ V S + ++++ + + + P S
Sbjct: 174 NMSGWESLSPEDKHAVQSLANQYIQDTKHEAEEKQETSPQGS 215
>gi|321464644|gb|EFX75651.1| hypothetical protein DAPPUDRAFT_55885 [Daphnia pulex]
Length = 1004
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
DD F + AKTGR+ CKKCK+ I GT+R+A + GKM W+H DC F++Q
Sbjct: 3 DDLPFRAEYAKTGRASCKKCKENIPQGTLRLAVIFQAAKFDGKMVSWYHFDCF---FERQ 59
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R +A D+ +D L EDQE++
Sbjct: 60 RPKSA-----GDIEHFDQLRWEDQEKI 81
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQ----WHHIDCILEVFKK 69
+F ++ AK+GR+ C+ C +KI +RI+K GY+ G + Q W+H+ C FK+
Sbjct: 111 DFLIEYAKSGRAACRGCLEKIGKDELRISKKGYDTKGGMRHGQMLDMWYHVKC----FKE 166
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
+R+ + VD + G+ DLT +D++ + P
Sbjct: 167 RREELEFVSGVDTIPGFKDLTADDKKVLSKELP 199
>gi|193690639|ref|XP_001947212.1| PREDICTED: poly [ADP-ribose] polymerase-like [Acyrthosiphon pisum]
Length = 1008
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVF 67
+D NF V+ AK+GR+ C C+ KI +RI KM Y+ + G + +WHH++C F
Sbjct: 108 EDTNFNVEYAKSGRAVCCGCQDKIVKEDIRIGKMDYDSDEARRFGGINRWHHLEC----F 163
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEK 125
K RQ +++ + G+D+L D+ + + P+ + ++ + PSSS+K
Sbjct: 164 IKLRQDLGFLDLASSLTGYDNLKEVDRTNLKNLLPKMTITTTTAHNLDKTDGPSSSKK 221
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GRS CK CK+ I+ +R+A M +P GK W+H +C F KQR T
Sbjct: 8 YRAEYAKSGRSKCKGCKEGIEKDHLRLAVMIQSPMFDGKQPNWYHFNCF---FAKQRPKT 64
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPK 131
V D+G +D + EDQ+++ ++ + +N P S++KKS K
Sbjct: 65 -----VADIGHFDSIRWEDQQKIKTKLESLIGTAN----------PVSTKKKSNGKK 106
>gi|237681143|ref|NP_001153714.1| poly-(ADP-ribose) polymerase [Tribolium castaneum]
Length = 991
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D + + AK+G S C+ CK I GTVR+A M +PF G M WHH+ C F KQR
Sbjct: 2 DLPYRAEYAKSGSSNCRGCKSPIGQGTVRLAVMVQSPFHDGMMPNWHHLHCF---FNKQR 58
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ DD+ ++ L EDQE +
Sbjct: 59 PKSE-----DDIYHFETLRLEDQEII 79
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP-----FGSGKMKQWHHIDCILEVF 67
K+F ++ AK+GR+ C+ C+QKI +RI+K + +G M WHH+ C F
Sbjct: 114 KDFKIEYAKSGRAACRGCEQKILKDEIRISKKDFETDIGKKYGGQDM--WHHVTC----F 167
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERK 118
+ R E D + G+ L EDQ E P + K DVP+ K
Sbjct: 168 AQLRAELGYFESADQLPGFKSLKKEDQAETKKALP-----AIKQEDVPDVK 213
>gi|322789313|gb|EFZ14625.1| hypothetical protein SINV_00499 [Solenopsis invicta]
Length = 979
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 8/95 (8%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
+DD + + AK+ RS C+ CKQ+I+ ++R+A + +P GK+ +W+H C F K
Sbjct: 2 DDDAKYLAEYAKSDRSKCQLCKQQINKLSLRLAAVVQSPVHDGKIPRWYHFKCF---FTK 58
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
QR ++ D++G +D++ EDQ+++ + ES
Sbjct: 59 QRPSST-----DEIGHFDEIRNEDQDKIRKKLEES 88
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F V+ AK+ RS C C++KI G RI+K Y + G + +WHH++C F K
Sbjct: 108 DFRVEYAKSSRSTCIGCQEKIIKGETRISKKDYETEEARRYGGLDRWHHVEC----FAKL 163
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R D++ G L+ ED++ + + P
Sbjct: 164 RADVGYYGSGDELPGAAQLSKEDRQSLKASLP 195
>gi|17562294|ref|NP_505659.1| Protein K07C5.3 [Caenorhabditis elegans]
gi|3878323|emb|CAA94896.1| Protein K07C5.3 [Caenorhabditis elegans]
Length = 493
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK--------MKQWHHIDCILEV 66
F D AK + C+KCK +++ G +R+ K+ N F + K MKQ+ H +C+ E+
Sbjct: 9 FCTDYAKRV-AKCQKCKMQLEKGVLRMGKIMPNFFVAAKDPSKPPPDMKQYFHTNCLFEM 67
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
K R TT I+ D++ G++DL EDQ+E+
Sbjct: 68 LFKARPTTKVIDETDEIEGFEDLNAEDQDEI 98
>gi|71679667|gb|AAI00002.1| Poly (ADP-ribose) polymerase family, member 1 [Danio rerio]
Length = 1011
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
+ +DDK + + AK+GR+ CKKCK I ++R+A M +P GK+ WHH C
Sbjct: 3 DSQDDKLYKAEYAKSGRASCKKCKDNIAKDSLRMAIMVQSPMFDGKVPHWHHFSCFW--- 59
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
A ++ D+ G+ DL +DQE+V
Sbjct: 60 -----LRAAVQSPSDISGFTDLRWDDQEKV 84
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCIL----EVF 67
+F V+ AK+ RS CK C QKI+ +R++K +P G + +W+H C + E+
Sbjct: 112 DFAVEYAKSNRSTCKGCDQKIE--KIRVSKKTVDPEKPQLGLIDRWYHTGCFVSRREELI 169
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
K + A+++ G+ L ED+EE+ R P E + D
Sbjct: 170 FKPEYSAAQLK------GFAVLRDEDKEELKKRLPAVKSEGKRKAD 209
>gi|113677594|ref|NP_001038407.1| poly [ADP-ribose] polymerase 1 [Danio rerio]
Length = 1013
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
+ +DDK + + AK+GR+ CKKCK I ++R+A M +P GK+ WHH C
Sbjct: 3 DSQDDKLYKAEYAKSGRASCKKCKDNIAKDSLRMAIMVQSPMFDGKVPHWHHFSCFW--- 59
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
A ++ D+ G+ DL +DQE+V
Sbjct: 60 -----LRAAVQSPSDISGFTDLRWDDQEKV 84
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCIL----EVF 67
+F V+ AK+ RS CK C QKI+ +R++K +P G + +W+H C + E+
Sbjct: 112 DFAVEYAKSNRSTCKGCDQKIEKDQIRVSKKTVDPEKPQLGLIDRWYHTGCFVSRREELI 171
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
K + A+++ G+ L ED+EE+ R P E + D
Sbjct: 172 FKPEYSAAQLK------GFAVLRDEDKEELKKRLPAVKSEGKRKAD 211
>gi|449682408|ref|XP_004210069.1| PREDICTED: poly [ADP-ribose] polymerase 1-like, partial [Hydra
magnipapillata]
Length = 568
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEV 66
P +D + + AK+GR+GCK CK I ++RIAKM +P GK+ QW+H C +
Sbjct: 199 PKMSEDLPYNAEYAKSGRAGCKSCKCNIGKDSLRIAKMVQSPHFDGKIPQWYHYSCFFKK 258
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
FK V D+ +D L +DQE++
Sbjct: 259 FKPLN--------VSDIKNFDSLRWDDQEKL 281
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 19/99 (19%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKM---------GYNPFGSGKMKQWH 58
N +K+F ++ AK+GR+ C+KC++KI+ +RIAK+ G PF W+
Sbjct: 299 NSTVNKDFCIEYAKSGRAKCRKCEEKIEKDIIRIAKIMESEESKFKGLIPF-------WY 351
Query: 59 HIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
H+ C + + A+ +++ GW +L+ EDQE++
Sbjct: 352 HVKCFA---LSKSELEAQNLTSNEIDGWGELSEEDQEKL 387
>gi|195453671|ref|XP_002073889.1| GK14355 [Drosophila willistoni]
gi|194169974|gb|EDW84875.1| GK14355 [Drosophila willistoni]
Length = 994
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+GR+ C+ C+QKI VRI K Y+ G WHH++C F +
Sbjct: 109 KDFGIEYAKSGRAACRGCEQKITKDQVRIRKTVYDTEVGMKYGGQALWHHMEC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIP 120
R + +++ G+ L ED++EV + P + K D PE K P
Sbjct: 165 MRSELGWFDTGENLPGYKSLKAEDKKEVQNALP-----AIKSEDAPEAKKP 210
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GR+ CK CK I T+R+A M +P GK+ W H++C FKKQR ++
Sbjct: 7 YMAEYAKSGRASCKGCKNAIAKDTLRLAVMVQSPVYDGKVPNWFHVNCF---FKKQRPSS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
A D+ +++L +DQ E+
Sbjct: 64 A-----GDIKNFENLRFDDQNEI 81
>gi|47224331|emb|CAG09177.1| unnamed protein product [Tetraodon nigroviridis]
Length = 233
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
++DK + + AK+GR+ CKKCK+ I ++R+A M +P GK+ WHH C +
Sbjct: 5 QNDKLYKAEYAKSGRASCKKCKENIAKDSLRMAIMVQSPMFDGKVPHWHHFSCFWQ---- 60
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
A + D+ G+ L EDQE+V
Sbjct: 61 ----RAAAQSTSDIDGFSSLRWEDQEKV 84
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 33/119 (27%)
Query: 15 FWVDRAKTGRSGCKKCKQKID-TGT--------------------------VRIAKMGYN 47
F V+ AK+ RS CK C+QKI+ GT +R++K +
Sbjct: 113 FAVEYAKSNRSTCKGCEQKIEKVGTEVYLDIKTIETLRVHHYFLSLLFQDQIRVSKKTID 172
Query: 48 PF--GSGKMKQWHHIDCILEVFKKQRQTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPE 103
P G + +W+H C + ++ + K E + G++ L ED+EE+ R PE
Sbjct: 173 PEKPQLGLIDRWYHTACFVS---RREELLFKPEYSASQLKGFNTLRAEDKEELKKRLPE 228
>gi|1709741|sp|Q11208.1|PARP_SARPE RecName: Full=Poly [ADP-ribose] polymerase; Short=PARP; AltName:
Full=NAD(+) ADP-ribosyltransferase; Short=ADPRT;
AltName: Full=Poly[ADP-ribose] synthase
gi|538248|dbj|BAA03943.1| poly(ADP-ribose) polymerase [Sarcophaga peregrina]
Length = 996
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E D F V+ +K+ R+ CK CK KI+ G +RIA M + F GK W H C F+K
Sbjct: 2 EIDLPFKVEYSKSSRASCKGCKNKIEAGILRIAAMVQSAFHDGKQPNWFHEQCF---FQK 58
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
QR T+A D+ ++++ EDQE +
Sbjct: 59 QRPTSA-----GDIENFENIRFEDQERI 81
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+GR+ C+ C+QKI +RI K ++ G WHH++C F +
Sbjct: 112 KDFGIEYAKSGRASCRGCEQKILKDQIRIRKTVFDTEVGMKYGGQPLWHHVEC----FAQ 167
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R ++ +++ G+ L +D+ +V P
Sbjct: 168 LRGELGWLDTGENLPGFQTLKSDDKADVKKALP 200
>gi|308503002|ref|XP_003113685.1| hypothetical protein CRE_26180 [Caenorhabditis remanei]
gi|308263644|gb|EFP07597.1| hypothetical protein CRE_26180 [Caenorhabditis remanei]
Length = 491
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Query: 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSGK--------MKQWHHIDCILEVFKKQRQTTAK 76
S C+KCK +++ G +R+ K+ N F + K MKQ+ H +C+ E+ K R TT
Sbjct: 18 SKCQKCKMQLEKGILRLGKIIPNFFLAAKDPSKPPPDMKQYFHKNCLFEMLFKARPTTKV 77
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKD 111
I+ +++ G++DL EDQ+E+ E + + +KD
Sbjct: 78 IDDTEEIEGFEDLNAEDQDEIKKLVDELVEKRSKD 112
>gi|341899724|gb|EGT55659.1| hypothetical protein CAEBREN_12656 [Caenorhabditis brenneri]
Length = 495
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 24/147 (16%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK--------MKQWHHIDCILEV 66
F D AK + C+KCK +++ G +R+ K+ N F + K MKQ+ H +C+ E+
Sbjct: 9 FCTDYAKRV-AKCQKCKMQLEKGILRMGKIMPNFFIAAKDPSKPPPDMKQYFHKNCLFEM 67
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERK-------- 118
K R TT I+ +++ G++DL EDQ+E+ E + +KD V +K
Sbjct: 68 LFKARPTTKVIDDTEELEGFEDLNAEDQDEIKKLIDELAEKRSKDGPVEPKKTPAKKKTE 127
Query: 119 -------IPSSSEKKSKTPKKKAVAYF 138
PS K TPK K A F
Sbjct: 128 DKGDVEGTPSRKRKNEDTPKNKRPAEF 154
>gi|242020640|ref|XP_002430760.1| polyA polymerase, putative [Pediculus humanus corporis]
gi|212515957|gb|EEB18022.1| polyA polymerase, putative [Pediculus humanus corporis]
Length = 992
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYN---PFGSGKMKQWHHIDCIL 64
N D ++ V+ AK+ R+ CK C++ I+ +RI+K Y G + +WHH+DC
Sbjct: 102 NIPDLGDYKVEYAKSKRAKCKVCEETINKDEIRISKKDYEGEIALKYGPVDRWHHVDC-- 159
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSS- 123
F K R+ + + G+ LT EDQ + ++ PE S+KD P +K+
Sbjct: 160 --FVKAREELEFFSSGEVLPGFKTLTEEDQNLLKTKIPELNNHSSKDGPSPPKKLKEDVN 217
Query: 124 ---EKKSKTPKKKAVAYFCLIRPL 144
+KK K Y L++PL
Sbjct: 218 DEFKKKLKKQNDLIFKYHDLLKPL 241
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFK-K 69
D+ + + AK+GR+ CK CK+ I ++R+A M +PF GK W+H C + F+ K
Sbjct: 4 DNLPYRAEYAKSGRASCKGCKENIAKESLRLAVMVQSPFFDGKQPNWYHFSCFFKKFRPK 63
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
+ A E + WD DQE + ++ ++ + +++ P IP + K +
Sbjct: 64 DSSSIAHFESIR----WD-----DQEAIKNKIGKTTKSKKRNKPSPSN-IPDLGDYKVEY 113
Query: 130 PKKK 133
K K
Sbjct: 114 AKSK 117
>gi|410916501|ref|XP_003971725.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Takifugu
rubripes]
Length = 1013
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
++DK + + AK+GR+ CKKCK+ I ++R+A M +P GK+ WHH C
Sbjct: 5 QNDKLYKAEYAKSGRASCKKCKENIAKDSLRMAIMVQSPMFDGKVPHWHHFSCFW----- 59
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
QR A + D+ G+ L EDQE++
Sbjct: 60 QR---AAAQSTSDIDGFSGLRWEDQEKI 84
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILE-----VF 67
F V+ AK+ RS CK C+QKI+ +R++K +P G + +W+H C + VF
Sbjct: 113 FAVEYAKSNRSTCKGCEQKIEKDQIRVSKKSVDPEKPQLGLIDRWYHTACFVSWREELVF 172
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
K + + + G+ +L ED+EE+ + P E + D
Sbjct: 173 KPEYNAS-------QLKGFSNLRAEDKEELKRKLPSIKTEGKRKSD 211
>gi|195400291|ref|XP_002058751.1| GJ11149 [Drosophila virilis]
gi|194147473|gb|EDW63180.1| GJ11149 [Drosophila virilis]
Length = 989
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GR+ CK CK I ++R+A M +PF GKM W H DC FKKQ+ +
Sbjct: 7 YMAEYAKSGRASCKGCKTVILKDSIRLAVMVQSPFHDGKMPNWFHKDCF---FKKQKPAS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESL 105
V D+ +++L DQ E LS+ E++
Sbjct: 64 -----VGDIKNFENLRFADQTE-LSKLIETI 88
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEV 66
E K+F ++ +K+GR+ C+ C+ KI VR+ K Y+ G K WHH++C
Sbjct: 102 EALKDFGIEYSKSGRAACRGCELKISKDEVRVFKTVYDTEIGMKYGGQKVWHHLEC---- 157
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIP 120
F + R + +++ G+ L ED+E VL P K D P+ K P
Sbjct: 158 FAQMRSDVGWFDTGENLPGYKLLKDEDKELVLKLLPVV-----KSDDTPDAKKP 206
>gi|268562533|ref|XP_002646686.1| Hypothetical protein CBG13063 [Caenorhabditis briggsae]
Length = 467
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK--------MKQWHHIDCILEV 66
F D AK + C+KCK +++ G +R+ K+ N F + K MKQ+ H +C+ E+
Sbjct: 9 FCTDYAKR-VAKCQKCKMQLEKGVLRMGKIMPNFFVAAKDPSKPPPDMKQYFHKECLFEM 67
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
K R TT I+ +++ G++DL EDQ+E+
Sbjct: 68 LFKARPTTKVIDETEEIEGFEDLNAEDQDEI 98
>gi|170053161|ref|XP_001862547.1| poly [Culex quinquefasciatus]
gi|167873802|gb|EDS37185.1| poly [Culex quinquefasciatus]
Length = 1000
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F + AK+GR+ CK CK KID +R+ M + F GK QW+H C F KQR TT
Sbjct: 8 FVSEYAKSGRASCKLCKDKIDKDELRLGAMVQSAFHDGKQAQWYHERCF---FGKQRPTT 64
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
D+ G++ L EDQ+ +
Sbjct: 65 E-----GDVAGFESLRFEDQKRI 82
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F V+ A +GR+ C+ C+ KI VRI K+ Y G WHH +C F K
Sbjct: 118 KDFGVEYAASGRAVCRGCEIKILKDEVRIKKVDYTTEVGMKYGGQALWHHAEC----FAK 173
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKI 119
R E + + G+ +L ED E V P + K +VP +K+
Sbjct: 174 LRSELGYFEKGEALPGYRNLKKEDMETVKRLLP-----AIKAEEVPAKKL 218
>gi|195107726|ref|XP_001998459.1| GI23619 [Drosophila mojavensis]
gi|193915053|gb|EDW13920.1| GI23619 [Drosophila mojavensis]
Length = 992
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ +K+ R+GC+ C+ KI+ +R++K Y+ G K WHH++C F +
Sbjct: 108 KDFSIEYSKSSRAGCRGCELKINKDEIRVSKTVYDTEVGMKYGGQKVWHHLEC----FAQ 163
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIP 120
R + +++ G+ L ED+E VL P + K D+PE K P
Sbjct: 164 MRADIGWFDSGENLPGYKSLKKEDKELVLKTLP-----AIKSEDMPEVKKP 209
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ V+ +KTGR+ CK CK I VRIA M + F GK W H DC FKKQ+ +
Sbjct: 7 YMVEYSKTGRASCKGCKTPIPKDVVRIAVMVQSAFHDGKTPNWFHKDCF---FKKQKPAS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
V D+ +++L DQ E+
Sbjct: 64 -----VGDIKNFENLRFADQTEI 81
>gi|307182369|gb|EFN69632.1| Poly [ADP-ribose] polymerase [Camponotus floridanus]
Length = 983
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
DD + + AK+ RS C++CKQ I ++RIA + +P G + +W+H +C F+KQ
Sbjct: 3 DDLPYRAEYAKSDRSKCQQCKQPISKQSLRIAAIVQSPVHDGTIPRWYHFECF---FEKQ 59
Query: 71 R-QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPE 103
R ++TA D+ +D++ EDQEE+ + E
Sbjct: 60 RPKSTA------DIACFDEIRLEDQEEIQKKIEE 87
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F V+ AK+ +S CK C +KI G RI+K Y + G + +WHH++C F K
Sbjct: 113 DFRVEYAKSNKSTCKGCDEKIIKGETRISKKDYETAEARRFGGLDRWHHVEC----FAKL 168
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R D++ G +L+ ED+ + + P
Sbjct: 169 RADLGYYGSGDELPGVKELSKEDRNSLKAALP 200
>gi|402589747|gb|EJW83678.1| hypothetical protein WUBG_05411 [Wuchereria bancrofti]
Length = 339
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-----GKMKQWHHIDCILEVFKK 69
F +D AK + CKKC+Q++ G +R+ +M NPF + +MK + H DC+ E +
Sbjct: 5 FGLDYAKRV-AKCKKCQQQLLKGDLRMWRMVPNPFTADSGNPTEMKNYFHSDCLFETLIR 63
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
R TT I+ DD+ GWD +D+E ++ +
Sbjct: 64 CRPTTKVIDSPDDIEGWDIANDDDKEAIIEKI 95
>gi|405969920|gb|EKC34863.1| Poly [ADP-ribose] polymerase 1 [Crassostrea gigas]
Length = 994
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D F + AK+GRS CK CK I G++R+A M +P GK+ W H C +
Sbjct: 6 DLPFKAEYAKSGRSSCKACKSNIGQGSLRLAVMVQSPVFDGKIPNWFHQACFWK------ 59
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
AK+ + D+ G+D L EDQE++
Sbjct: 60 --RAKVATIGDIHGFDALRWEDQEKL 83
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 15/96 (15%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVF 67
D +F ++ AK+G+S CK C+ I VRI K Y + G + QWHH+DC +E
Sbjct: 105 DAGDFSIEYAKSGKSKCKACEDFIGKDQVRIGKKDYESHRAKMYGPVDQWHHVDCFVE-- 162
Query: 68 KKQRQTTAKIEVVDDMG-----GWDDLTPEDQEEVL 98
+R ++E D+G G+D L +D+E ++
Sbjct: 163 --KRD---ELEFGSDLGANQIKGFDRLKDDDKEMLI 193
>gi|330796781|ref|XP_003286443.1| hypothetical protein DICPUDRAFT_87156 [Dictyostelium purpureum]
gi|325083566|gb|EGC37015.1| hypothetical protein DICPUDRAFT_87156 [Dictyostelium purpureum]
Length = 794
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 12 DKNFWVDRAKTGRSGCK--KCKQKIDTGTVRIAKMG-YNPFGS-GKMKQWHHIDCILEVF 67
+ + V+ A +GRS CK KCK++I+ ++RI K+ + F + G+ W H +C E
Sbjct: 3 NNTYRVEYAGSGRSSCKHSKCKKQIEKTSLRIGKLYPSDRFETDGQAIDWFHPNCFFEKQ 62
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQ---EEVLSRFPESL 105
K R+TT K++ +DD+ G+DD+ DQ EE+++ +S+
Sbjct: 63 KNARKTTKKVDEIDDLEGFDDIKKSDQKLIEELINDHRDSI 103
>gi|195062453|ref|XP_001996195.1| GH22365 [Drosophila grimshawi]
gi|193899690|gb|EDV98556.1| GH22365 [Drosophila grimshawi]
Length = 992
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GR+ CK CK I ++R+A M +PF GK+ W H DC L KKQR T
Sbjct: 7 YAAEYAKSGRASCKGCKTPIPKDSLRLATMVQSPFHDGKVPNWFHKDCFL---KKQRPAT 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
V D+ +++L +DQ E+
Sbjct: 64 -----VGDIKNFENLRFDDQTEL 81
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ +K+GR+ C+ C+ KI+ VR+ K ++ G K WHH++C F K
Sbjct: 108 KDFGIEYSKSGRAACRGCELKINKDEVRVCKTLFDTEVGMKYGGQKVWHHLEC----FAK 163
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIP 120
R + + + G+ L +D+ EVL P K D+P+ K P
Sbjct: 164 MRSDLGWFDTGETLPGYKGLKADDKAEVLKLLPLI-----KSDDLPDAKKP 209
>gi|426239553|ref|XP_004013685.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Ovis aries]
Length = 1013
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ WHH+ C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCKESIPKDSIRMAFMVQSPMFDGKIPHWHHLSCFWKVGHSIW 65
Query: 72 QTTAKIEVVDDMGGWDD 88
++E ++ WDD
Sbjct: 66 HPDVEVEGFSEL-RWDD 81
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F AK+ RS CK C +KI+ G VR++K P G + W+H +C ++ K+
Sbjct: 112 DFGAGYAKSNRSTCKSCMEKIEKGQVRLSKKVVYPDKPQLGMVDCWYHPNCFVQ---KRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT EDQE + + P
Sbjct: 169 ELGFRPEFSASQLMGFSLLTAEDQETLKKQLP 200
>gi|440798641|gb|ELR19708.1| Poly(ADPribose) polymerase catalytic domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 1098
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFK 68
V+ A +GRSGC+ C+QKID +R+A+M + GK+ +WHH DC +K
Sbjct: 317 VEYAASGRSGCRVCRQKIDMDDLRVARMVQSQKFDGKIPEWHHYDCFFSTYK 368
>gi|328790898|ref|XP_624477.3| PREDICTED: poly [ADP-ribose] polymerase [Apis mellifera]
Length = 991
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D + V+ AK+ RS CK CK I ++R+A + +P GK+ W+H C F KQR
Sbjct: 4 DLPYSVEYAKSSRSSCKNCKNSIQKDSLRLAVIVQSPVHDGKIPNWYHPPCF---FTKQR 60
Query: 72 -QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESL 105
+TTA D+ +D++ EDQ+E+ + ES+
Sbjct: 61 PKTTA------DIANFDNIRWEDQKELQKKIEESI 89
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKK 69
++F V AK+ +S CK C+++I G +RI+K + + G + +WHH+DC ++V
Sbjct: 114 RDFVVQYAKSNKSTCKACEERIVQGEIRISKKDFESEQARRYGGIDRWHHLDCFIKV--- 170
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R++ E D + G ++L+ EDQ+++ P
Sbjct: 171 -RESLQFYESGDTLPGKEELSKEDQKKLKDALP 202
>gi|332019196|gb|EGI59706.1| Poly [ADP-ribose] polymerase [Acromyrmex echinatior]
Length = 981
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 20/120 (16%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
+DD + V+ AK+ RS C+ CKQ I ++R+A + +P GK+ +W+H C F K
Sbjct: 2 DDDLPYMVEYAKSDRSKCQSCKQSIMKTSLRLATVVQSPVHDGKIPRWYHFKCF---FLK 58
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
QR ++ +D+ +D + +DQ+ + + E R +PS+S+ + +T
Sbjct: 59 QRPSST-----NDIACFDQIRNQDQDAIRKKIEEC------------RNVPSASKGRKRT 101
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F V+ AK+ R+ C C++KI G RIAK Y + G + +W H++C F K
Sbjct: 108 DFRVEYAKSSRATCIGCQEKIIKGETRIAKKDYESEEARKFGGLDRWLHVEC----FVKL 163
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R D++ G + L+ ED+ + + P
Sbjct: 164 RADMGYYGRGDELPGAEQLSKEDRANLKTSLP 195
>gi|380019416|ref|XP_003693603.1| PREDICTED: poly [ADP-ribose] polymerase-like [Apis florea]
Length = 991
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D + V+ AK+ RS CK CK I ++R+A + +P GK+ W+H C F KQR
Sbjct: 4 DLPYSVEYAKSSRSSCKNCKNSIQKDSLRLAVIVQSPVHDGKIPNWYHPPCF---FTKQR 60
Query: 72 -QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESL 105
+TTA D+ +D++ EDQ+E+ + ES+
Sbjct: 61 PKTTA------DIANFDNIRWEDQKELQKKIEESI 89
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKK 69
++F V AK+ +S CK C+++I G +RI+K + + G + +WHH+DC ++V
Sbjct: 114 RDFVVQYAKSNKSTCKACEERIVQGEIRISKKDFESEQARRYGGIDKWHHLDCFIKV--- 170
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R++ E D + G +DL+ EDQ+++ P
Sbjct: 171 -RESLQFYESGDALPGKEDLSKEDQKKLKDALP 202
>gi|168033918|ref|XP_001769461.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679381|gb|EDQ65830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 989
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 6 EPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCI 63
E E + ++ AK+ RS CK C +KID G VRI+ M G GK+ QW H C
Sbjct: 98 EDGDESSGEYAIENAKSSRSTCKSCNEKIDKGQVRISTMVAADGGRFRGKVPQWRHAKCF 157
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
L + + + GWD LT EDQ +V
Sbjct: 158 LSMGHFSGPLAS-------LPGWDTLTSEDQAQV 184
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
P K + + AK+GR+ C+ C I R+AKM + G M WHH CI F
Sbjct: 3 TPAPQKPWKSEYAKSGRASCRTCSSPIAKDAFRLAKMVQSTQFDGMMAYWHHAGCI---F 59
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKS 127
KK++Q I +D+ G D L EDQ+ + + N+D D + + K S
Sbjct: 60 KKKKQ----IHDWNDVEGADTLRWEDQQNLRKFIEAKTKGVNEDGDESSGEYAIENAKSS 115
Query: 128 KT 129
++
Sbjct: 116 RS 117
>gi|356504997|ref|XP_003521279.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Glycine max]
Length = 997
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
NP+D K + + AK+GRS C+ CK I + T+R+ KM + G M W+H CIL
Sbjct: 3 NPQDQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSTKFDGLMPMWNHAACIL--- 59
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
KK Q I++++D+ + L EDQ+++
Sbjct: 60 KKANQ----IKLLEDVENLESLRWEDQQKI 85
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQTTA 75
++ ++ R+ CK C QKI G VRI+ P G G K WHH C++E+ +
Sbjct: 119 IEVSQNSRATCKDCGQKIIKGEVRIST---KPGGQGAKGLAWHHAKCLMEL-------SP 168
Query: 76 KIEVVDDMGGWDDLTPEDQEEV 97
I+V + GW++L+ DQ V
Sbjct: 169 SIDVY-KLSGWNNLSSSDQSAV 189
>gi|157130592|ref|XP_001661932.1| poly [adp-ribose] polymerase [Aedes aegypti]
gi|108871855|gb|EAT36080.1| AAEL011815-PA [Aedes aegypti]
Length = 999
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GR+ CK CK KID +R+ M + F GK QW+H C F+K R TT
Sbjct: 8 YVAEYAKSGRASCKMCKNKIDKDELRLGAMVQSAFHDGKQAQWYHEKCF---FQKLRPTT 64
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
D+ ++ L EDQE++
Sbjct: 65 E-----GDIAHFEGLRYEDQEKL 82
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F V+ A +GR+ C+ C+ KI VRI KM Y G WHH +C F K
Sbjct: 117 KDFAVEYAASGRATCRGCEIKILKDEVRIKKMDYTTEVGMKYGGQAMWHHAEC----FAK 172
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS 121
R E + + G++ L ED+ +V P + K +VP +K+ S
Sbjct: 173 LRSELGYFEKGESLPGFNQLKKEDKAKVKELLP-----AIKQEEVPTKKVKS 219
>gi|255560005|ref|XP_002521021.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
gi|223539858|gb|EEF41438.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
Length = 982
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ ++T R+ C++C QKI G VRI+ P K WHH DC +++ +
Sbjct: 107 YGIEVSQTSRATCRRCSQKILKGQVRISSKPDEP--RAKALAWHHADCFIDLHPSVQ--- 161
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSK 128
V+ M GW+ L P DQE V + E + + K V ERK S+ K K
Sbjct: 162 -----VEKMSGWESLPPSDQEAVRALIKE-VPSTAKAGIVEERKSTSAVGAKRK 209
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GRS CK CK+ ID +R+ KM G M W+H C+L KK +Q
Sbjct: 10 AEYAKSGRSSCKTCKKPIDKEKLRLGKMVQATQFDGFMPMWNHESCVL---KKAKQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ +DD+ G D L EDQ+++
Sbjct: 63 IKSIDDVEGIDSLRWEDQQKI 83
>gi|296230270|ref|XP_002760625.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Callithrix
jacchus]
Length = 992
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
+++ ++ WDD + E+ L F +SN+
Sbjct: 66 HPDIEVDGFSEL-RWDD--QQKAEKTLGDFAAEYAKSNR 101
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H DC + K +
Sbjct: 91 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPDCFV---KNRE 147
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 148 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 179
>gi|307207165|gb|EFN84955.1| Poly [ADP-ribose] polymerase [Harpegnathos saltator]
Length = 983
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
+DD + V+ AK+ RS C+ CK I ++R+A + +P GK+ +W+H C F K
Sbjct: 2 DDDLPYLVEYAKSNRSSCQGCKTLIGKSSLRLAAVVQSPVHDGKIPKWYHSKCF---FLK 58
Query: 70 QR-QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLR 106
QR ++TA D+ +D + +DQE + R E+L+
Sbjct: 59 QRPKSTA------DIACFDQIRDKDQEVLKKRLEEALK 90
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 12/105 (11%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F V+ AK+ RS CK C++KI VRI+K Y + G + +W+H++C F K
Sbjct: 111 DFKVEYAKSSRSTCKGCEEKIIKEEVRISKKDYETDEAKKYGGIDRWYHVEC----FAKL 166
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVP 115
R ++ G DL+ EDQE V + +L + N+D D+P
Sbjct: 167 RVDLGYYGEGSELPGIKDLSKEDQETVKA----ALNKINQD-DIP 206
>gi|194382466|dbj|BAG64403.1| unnamed protein product [Homo sapiens]
Length = 993
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV---LSRFPESLRESNK 110
+++ G+ +L +DQ++V L F +SN+
Sbjct: 66 HPDVEVD------GFSELRWDDQQKVKKTLGDFAAEYAKSNR 101
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 91 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 147
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 148 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 179
>gi|347969501|ref|XP_312938.4| AGAP003230-PA [Anopheles gambiae str. PEST]
gi|333468550|gb|EAA08394.4| AGAP003230-PA [Anopheles gambiae str. PEST]
Length = 995
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F + +K+ R+ C+ CKQ I +R+A M +P GK+ QW+H DC FKKQR T
Sbjct: 8 FLAEYSKSNRAMCRLCKQAIAKDVLRLAAMVQSPMHDGKVAQWYHDDCF---FKKQRPAT 64
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
D+ + L EDQ+++
Sbjct: 65 E-----GDVANIEALRYEDQKKI 82
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K++ V+ A +GR+ C+ C+ KI +RI K+ Y+ G WHH +C F K
Sbjct: 109 KDYGVEYAPSGRAMCRGCEIKILKDEMRIKKVAYDTEVGMKYGGQPLWHHAEC----FAK 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKI 119
R E + + G+ + PEDQ+ + P + K DVP +K+
Sbjct: 165 LRSELGYFEKAESLPGYRSMKPEDQKILKGLLP-----AIKAEDVPAKKV 209
>gi|328870256|gb|EGG18631.1| SMAD/FHA domain-containing protein [Dictyostelium fasciculatum]
Length = 1221
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 12 DKNFWVDRAKTGRSGCKK--CKQKIDTGTVRIAKMG-YNPFGS-GKMKQWHHIDCILEVF 67
D+ F V+ AKT RS CK CK I TVRIAKM N F G + H +C
Sbjct: 3 DRTFRVEYAKTARSSCKSTDCKANIPKDTVRIAKMYPSNRFDDDGVATDYFHSECFFRAQ 62
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ R+T+ + E ++D+ G+++L +DQ E+
Sbjct: 63 GRARKTSKRAEDIEDLEGFEELEKKDQAEI 92
>gi|297280655|ref|XP_001090628.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Macaca
mulatta]
Length = 993
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV---LSRFPESLRESNK 110
+++ G+ +L +DQ++V L F +SN+
Sbjct: 66 HPDVEVD------GFSELRWDDQQKVKKTLGDFAAEYAKSNR 101
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 91 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPHCFV---KNRE 147
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 148 ELGFRPEYSASQLKGFSLLAAEDKEALKKQLP 179
>gi|3220000|sp|P26446.2|PARP1_CHICK RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
Length = 1011
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKPYRAEYAKSGRASCKKCGESIAKDSLRLALMVQSPMFDGKVPHWHHYSC----FWKR- 60
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
A+I D+ G+ +L EDQE++
Sbjct: 61 ---ARIVSHTDIDGFPELRWEDQEKI 83
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C+QKI+ G +RI+K +P G + W+H DC V ++
Sbjct: 112 DFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQLGMIDNWYHPDCF--VSRRAE 169
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
+ G+ L ED+E + + P + E +
Sbjct: 170 LGFLPAYGATQLLGFSILKAEDKETLKKQLPATKTEGKR 208
>gi|45383984|ref|NP_990594.1| poly [ADP-ribose] polymerase 1 [Gallus gallus]
gi|63743|emb|CAA36917.1| unnamed protein product [Gallus gallus]
Length = 1011
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKPYRAEYAKSGRASCKKCGESIAKDSLRLALMVQSPMFDGKVPHWHHYSC----FWKR- 60
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
A+I D+ G+ +L EDQE++
Sbjct: 61 ---ARIVSHTDIDGFPELRWEDQEKI 83
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C+QKI+ G +RI+K +P G + W+H DC V ++
Sbjct: 112 DFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQLGMIDNWYHPDCF--VSRRAE 169
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
+ G+ L ED+E + + P + E +
Sbjct: 170 LGFLPAYGATQLLGFSILKAEDKETLKKQLPATKTEGKR 208
>gi|443717140|gb|ELU08334.1| hypothetical protein CAPTEDRAFT_213234 [Capitella teleta]
Length = 841
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 14/134 (10%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQRQ 72
+ D AK S CKKCK+K++ G +R+AK+ N F G G+MKQ+HH C+ E F + R
Sbjct: 6 YACDYAKRSTSSCKKCKKKLEKGEMRLAKVVANYFNDGDGEMKQYHHASCLFETFVRARA 65
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKK 132
TT IE DD+ G+ D+ + ++++++R +++SN D P P S K +
Sbjct: 66 TTKIIESPDDVEGFGDM-EQTEKDLINRL---IKDSNSS-DSPH---PFSWYKHR---VQ 114
Query: 133 KAVAY-FCLIRPLC 145
AV + C RP C
Sbjct: 115 IAVRFNLCFCRPFC 128
>gi|350404320|ref|XP_003487068.1| PREDICTED: poly [ADP-ribose] polymerase-like [Bombus impatiens]
Length = 990
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F V AK+ +S CK C++KI G +R++K + G + +WHH++C F K
Sbjct: 115 DFLVQYAKSNKSTCKACEEKIVQGEIRVSKKDFESEHGRRYGGIDRWHHLEC----FAKV 170
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R++ E D + G D+L+ +DQ+++ S P
Sbjct: 171 RESLQFYESGDSLPGKDELSKDDQKKLKSVLP 202
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 12/98 (12%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
NP D + V+ AK+ R+ C+ CK+ I+ ++R+A + +P GK+ +W+H C F
Sbjct: 2 NP--DLPYSVEYAKSSRASCQNCKKNIEKDSLRLAVIVQSPVHDGKVPKWYHPPCF---F 56
Query: 68 KKQR-QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
KQR +TTA D+ +D++ EDQ+E+ R E+
Sbjct: 57 MKQRPKTTA------DIANFDNIRWEDQKELQRRIEEA 88
>gi|359480257|ref|XP_003632422.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Vitis
vinifera]
Length = 992
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQTTA 75
++ ++T R+ CK+C QKI G VRI+ P G G K WHH +C LE+ +
Sbjct: 109 IEVSQTSRATCKRCSQKIMKGEVRISS---KPDGQGAKGLAWHHANCFLEM--------S 157
Query: 76 KIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
+++ + GWD L+ DQE V + +S
Sbjct: 158 PSTLIEKLSGWDGLSSSDQETVCALIKKS 186
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK ID R+ KM G M W+H CIL KK Q
Sbjct: 10 AEYAKSSRSSCKTCKTPIDKEKFRLGKMVQASQFDGFMPMWNHAGCIL---KKANQ---- 62
Query: 77 IEVVDDMGG-----WDD 88
I+ +DD+ G WDD
Sbjct: 63 IKSLDDVEGIELLRWDD 79
>gi|395836171|ref|XP_003791037.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Otolemur garnettii]
Length = 1014
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L EDQ++V
Sbjct: 66 HPDMEVD------GFSELRWEDQQKV 85
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLTAEDKEALRKQLP 200
>gi|225437838|ref|XP_002263185.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Vitis
vinifera]
Length = 984
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQTTA 75
++ ++T R+ CK+C QKI G VRI+ P G G K WHH +C LE+ +
Sbjct: 109 IEVSQTSRATCKRCSQKIMKGEVRISS---KPDGQGAKGLAWHHANCFLEM--------S 157
Query: 76 KIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
+++ + GWD L+ DQE V + +S
Sbjct: 158 PSTLIEKLSGWDGLSSSDQETVCALIKKS 186
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK ID R+ KM G M W+H CIL KK Q
Sbjct: 10 AEYAKSSRSSCKTCKTPIDKEKFRLGKMVQASQFDGFMPMWNHAGCIL---KKANQ---- 62
Query: 77 IEVVDDMGG-----WDD 88
I+ +DD+ G WDD
Sbjct: 63 IKSLDDVEGIELLRWDD 79
>gi|297744119|emb|CBI37089.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQTTA 75
++ ++T R+ CK+C QKI G VRI+ P G G K WHH +C LE+ +
Sbjct: 109 IEVSQTSRATCKRCSQKIMKGEVRISS---KPDGQGAKGLAWHHANCFLEM--------S 157
Query: 76 KIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
+++ + GWD L+ DQE V + +S
Sbjct: 158 PSTLIEKLSGWDGLSSSDQETVCALIKKS 186
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK ID R+ KM G M W+H CIL KK Q
Sbjct: 10 AEYAKSSRSSCKTCKTPIDKEKFRLGKMVQASQFDGFMPMWNHAGCIL---KKANQ---- 62
Query: 77 IEVVDDMGG-----WDD 88
I+ +DD+ G WDD
Sbjct: 63 IKSLDDVEGIELLRWDD 79
>gi|340716645|ref|XP_003396806.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase-like
[Bombus terrestris]
Length = 990
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F V AK+ +S CK C++KI G +R++K + G + +WHH++C F K
Sbjct: 115 DFLVQYAKSNKSTCKACEEKIVQGEIRVSKKDFESEHGRRYGGIDRWHHLEC----FAKV 170
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R++ E D + G D+L+ +DQ+++ S P
Sbjct: 171 RESLQFYESGDALPGKDELSKDDQKKLKSVLP 202
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D + V+ AK+ R+ C+ CK+ I+ ++R+A + +P GK+ +W+H C F KQR
Sbjct: 4 DLPYSVEYAKSSRASCQNCKKNIEKDSLRLAVIVQSPVHDGKVPKWYHPPCF---FMKQR 60
Query: 72 -QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
+TTA D+ +D++ EDQ+E+ R E+
Sbjct: 61 PKTTA------DIANFDNIRWEDQKELQRRIEEA 88
>gi|325297035|ref|NP_001191521.1| poly-(ADP-ribose) polymerase I [Aplysia californica]
gi|256550154|gb|ACU83597.1| poly-(ADP-ribose) polymerase I [Aplysia californica]
Length = 985
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D F + AK+GRSGCK CK I G++R+A M +P GK+ W H C +
Sbjct: 5 DLPFQAEYAKSGRSGCKACKGNIAQGSLRLAVMVQSPHFDGKVPNWFHYACFWK------ 58
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
AK DD+ L EDQE++
Sbjct: 59 --RAKCHNADDIHNIHSLRWEDQEKI 82
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F + AK+G+S C+ C++ I ++RI+K Y + G WHH+DC F +
Sbjct: 102 DFNTEYAKSGKSRCRGCEENIAKDSLRISKKEYESQRAKMYGPQDLWHHVDC----FVDK 157
Query: 71 RQTTAKIEVVDD--MGGWDDLTPEDQEEVLSRF 101
R E D + G+ L PED+E + ++
Sbjct: 158 RDELGFTEQSDPSIIKGFAKLKPEDKELLYAKL 190
>gi|358334028|dbj|GAA38154.2| poly [ADP-ribose] polymerase [Clonorchis sinensis]
Length = 1106
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E D + VD AK+GR+GC KCK I ++R+A++ GK+ +W H C
Sbjct: 2 EVDYQYQVDYAKSGRAGCTKCKTPIPQDSLRVARLIQASNFDGKIPKWFHFRCFF----- 56
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
KI+ ++ +D L EDQE++ S S
Sbjct: 57 --TGKIKIQATSEIKNFDSLRWEDQEKIRSALGSS 89
>gi|326435432|gb|EGD81002.1| hypothetical protein PTSG_10946 [Salpingoeca sp. ATCC 50818]
Length = 180
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 2 SDKEEP--NPEDDK--NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQ- 56
+ +EEP PE+ K V+ AK+ RS C++CK ID G RI M + + SG+
Sbjct: 18 ATQEEPLIKPEEKKETRVLVEPAKSSRSTCRRCKDTIDRGETRIGIMAPSRY-SGETPAY 76
Query: 57 ----WHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
W H+ C + + R+ T K+ D+ G+DDL P+++ ++
Sbjct: 77 DTTWWFHVPCFITRQLRSREYTPKVRETSDLEGFDDLDPKERHKL 121
>gi|356572249|ref|XP_003554282.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Glycine max]
Length = 996
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
NP+D K + + AK+GRS C+ CK I + T+R+ KM + G + W+H C+L
Sbjct: 3 NPQDQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSTKFDGLVPMWNHAACVL--- 59
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
KK Q I++V+D+ + L EDQ+++
Sbjct: 60 KKANQ----IKLVEDVENLESLRWEDQQKI 85
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 14/84 (16%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSG-KMKQWHHIDCILEVFKKQRQTT 74
++ ++ R+ CK C QKI G VRI+ K G G G K WHH C++++ +
Sbjct: 119 IEVSQNSRATCKDCGQKIIKGEVRISTKQG----GQGAKGLAWHHAKCLIDL-------S 167
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVL 98
IE VD + GW++L+ DQ V+
Sbjct: 168 PSIE-VDKLSGWNNLSSSDQSAVI 190
>gi|190167|gb|AAA60137.1| poly(ADP-ribose) polymerase [Homo sapiens]
Length = 1014
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVQVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|147903139|ref|NP_001081571.1| poly [ADP-ribose] polymerase 1 [Xenopus laevis]
gi|84569962|gb|AAI10779.1| PARP protein [Xenopus laevis]
Length = 1011
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKLYRAEYAKSGRASCKKCGDNIAKESLRLAIMVQSPMFDGKVPHWHHYSC----FWKR- 60
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
A++ D+ G+ +L EDQE +
Sbjct: 61 ---ARVLSQGDIYGYTELRWEDQEMI 83
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYN---PFGSGKMKQWHHIDCILEVFKKQ 70
+F + AK+ RS CK C+QKI+ G +RI+K + P G + +W+H DC V ++
Sbjct: 111 DFAAEYAKSNRSACKGCEQKIEKGQIRISKKSVDVERP-QLGMIDRWYHPDCF--VSSRE 167
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ G+ L+ ED++ + + P E + D
Sbjct: 168 ELGFLPSYSASQLKGFTILSAEDKDSLKKKLPAVKNEGKRKAD 210
>gi|189065421|dbj|BAG35260.1| unnamed protein product [Homo sapiens]
Length = 1014
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|156523968|ref|NP_001609.2| poly [ADP-ribose] polymerase 1 [Homo sapiens]
gi|130781|sp|P09874.4|PARP1_HUMAN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|21693601|gb|AAM75364.1|AF524947_1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) [Homo
sapiens]
gi|178190|gb|AAA51663.1| NAD+ ADP-ribosyltransferase [Homo sapiens]
gi|119590189|gb|EAW69783.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a
[Homo sapiens]
gi|119590190|gb|EAW69784.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a
[Homo sapiens]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|190267|gb|AAA60155.1| poly(ADP-ribose) polymerase [Homo sapiens]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|426333983|ref|XP_004065376.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 1
[Gorilla gorilla gorilla]
Length = 1021
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|22902366|gb|AAH37545.1| Poly (ADP-ribose) polymerase 1 [Homo sapiens]
gi|123996301|gb|ABM85752.1| poly (ADP-ribose) polymerase family, member 1 [synthetic
construct]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|397487818|ref|XP_003814976.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Pan paniscus]
gi|410223934|gb|JAA09186.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
gi|410253044|gb|JAA14489.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
gi|410295906|gb|JAA26553.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
gi|410335525|gb|JAA36709.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|380809822|gb|AFE76786.1| poly [ADP-ribose] polymerase 1 [Macaca mulatta]
gi|383412919|gb|AFH29673.1| poly [ADP-ribose] polymerase 1 [Macaca mulatta]
gi|384940826|gb|AFI34018.1| poly [ADP-ribose] polymerase 1 [Macaca mulatta]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPHCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGD 211
>gi|355745871|gb|EHH50496.1| hypothetical protein EGM_01339 [Macaca fascicularis]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPHCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGD 211
>gi|168270914|dbj|BAG10250.1| poly [ADP-ribose] polymerase-1 [synthetic construct]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR+ K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLFKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|123981466|gb|ABM82562.1| poly (ADP-ribose) polymerase family, member 1 [synthetic
construct]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|355558712|gb|EHH15492.1| hypothetical protein EGK_01593 [Macaca mulatta]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPHCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGD 211
>gi|109018052|ref|XP_001090984.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 4 [Macaca
mulatta]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPHCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGD 211
>gi|410034528|ref|XP_003949754.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 1
[Pan troglodytes]
Length = 1014
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|402857047|ref|XP_003893085.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Papio anubis]
Length = 1153
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 146 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 205
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 206 HPDVEVD------GFSELRWDDQQKV 225
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 252 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPHCFV---KNRE 308
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 309 ELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGD 351
>gi|350644595|emb|CCD60678.1| poly [ADP-ribose] polymerase, putative [Schistosoma mansoni]
Length = 957
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F VD AK+ RS C KCK +I+ ++RIA + P GK+ +W H DC ++
Sbjct: 7 FDVDYAKSNRSKCNKCKVEINQNSLRIAILVQAPNFDGKIPRWFHYDCFW-------KSK 59
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
A +E ++ +D + EDQE++
Sbjct: 60 AHVESTAEIKNFDSIRWEDQEKI 82
>gi|296479253|tpg|DAA21368.1| TPA: poly [ADP-ribose] polymerase 1 [Bos taurus]
Length = 1016
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ W+H+ C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCKESIPKDSIRMAFMVQSPMFDGKIPHWYHLSCFWKVGFSIW 65
Query: 72 QTTAKIEVVDDMGGWDD 88
++E ++ WDD
Sbjct: 66 HPDVEVEGFSEL-RWDD 81
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F AK+ RS CK C +KID G VR++K P G + W+H C ++ K+
Sbjct: 115 DFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQLGMVDCWYHPKCFVQ---KRE 171
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT EDQE + + P
Sbjct: 172 ELGFRPEFSASQLMGFSVLTAEDQETLKKQLP 203
>gi|119590191|gb|EAW69785.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_b
[Homo sapiens]
Length = 1008
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 101 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 157
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 158 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 189
>gi|332252144|ref|XP_003275213.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Nomascus leucogenys]
Length = 955
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDIEVD------GFSELRWDDQQKV 85
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H +C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKNEGKRKGD 211
>gi|256072936|ref|XP_002572789.1| poly [ADP-ribose] polymerase [Schistosoma mansoni]
Length = 977
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F VD AK+ RS C KCK +I+ ++RIA + P GK+ +W H DC ++
Sbjct: 7 FDVDYAKSNRSKCNKCKVEINQNSLRIAILVQAPNFDGKIPRWFHYDCFW-------KSK 59
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
A +E ++ +D + EDQE++
Sbjct: 60 AHVESTAEIKNFDSIRWEDQEKI 82
>gi|410985663|ref|XP_003999138.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 1
[Felis catus]
Length = 1013
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H DC + K +
Sbjct: 112 DFAAEYAKSSRSTCKGCMEKIEKGQIRLSKKMLDPEKPQLGMIDRWYHPDCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ LTPED+E + + P E + D
Sbjct: 169 ELGFRPEFSAGQLKGFGLLTPEDKETLKKQLPGVKSEGKRKGD 211
>gi|327262605|ref|XP_003216114.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Anolis
carolinensis]
Length = 1006
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
+K + + AK+GR+ CKKC I ++R+A M +P GK+ WHH C +K+ R
Sbjct: 6 EKPYRAEYAKSGRASCKKCGDNIAKDSLRLAIMVQSPMFDGKVPHWHHFSCF---WKRAR 62
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ D+ G+ +L EDQE++
Sbjct: 63 LISHA-----DVDGFSELRWEDQEKI 83
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCIL 64
+F V AK+ RS CK C+QKI+ G +RI+K NP G + W+H C +
Sbjct: 106 DFAVGYAKSNRSTCKGCEQKIEKGHIRISKKMVNPEKPQLGMIDNWYHTSCFI 158
>gi|825702|emb|CAA39606.1| NAD(+) ADP-ribosyltransferase [Homo sapiens]
Length = 95
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
>gi|27807449|ref|NP_777176.1| poly [ADP-ribose] polymerase 1 [Bos taurus]
gi|130779|sp|P18493.2|PARP1_BOVIN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|217582|dbj|BAA14114.1| poly(ADP-ribose) synthetase [Bos taurus]
Length = 1016
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ W+H+ C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCKESIPKDSIRMAFMVESPMFDGKIPHWYHLSCFWKVGFSIW 65
Query: 72 QTTAKIEVVDDMGGWDD 88
++E ++ WDD
Sbjct: 66 HPDVEVEGFSEL-RWDD 81
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F AK+ RS CK C +KID G VR++K P G + W+H C ++ K+
Sbjct: 115 DFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQLGMVDCWYHPKCFVQ---KRE 171
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT EDQE + + P
Sbjct: 172 ELGFRPEFSATHLMGFSVLTAEDQETLKKQLP 203
>gi|4432827|gb|AAD20677.1| putative poly (ADP-ribose) polymerase [Arabidopsis thaliana]
Length = 1009
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ ++T R+GC+KC +KI G VRI P G M WHH C LE+ +
Sbjct: 114 YGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM--WHHAKCFLEMSSSTELES 171
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKKA 134
GW + DQE +L + ++ +P++ K K+ K
Sbjct: 172 LS--------GWRSIPDSDQEALLP--------------LVKKALPAA--KTGKSLKDPD 207
Query: 135 VAYFCLIRPLCF 146
+ YF LI PL +
Sbjct: 208 LQYFSLIFPLIY 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK I+ R+ K+ + G M W+H CIL + T +
Sbjct: 10 AEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL-------KKTKQ 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G + L EDQ+++
Sbjct: 63 IKSVDDVEGIESLRWEDQQKI 83
>gi|403277375|ref|XP_003930339.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Saimiri boliviensis
boliviensis]
Length = 1013
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDIEVD------GFSELRWDDQQKV 85
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H DC + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPDCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|327262607|ref|XP_003216115.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Anolis
carolinensis]
Length = 1009
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
+K + + AK+GR+ CKKC I ++R+A M +P GK+ WHH C +K+ R
Sbjct: 6 EKPYRAEYAKSGRASCKKCGDNIAKDSLRLAIMVQSPMFDGKVPHWHHFSCF---WKRAR 62
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ D+ G+ +L EDQE++
Sbjct: 63 LISHA-----DVDGFSELRWEDQEKI 83
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 2 SDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHH 59
+ K E N D F V AK+ RS CK C+QKI+ G +RI+K NP G + W+H
Sbjct: 100 AGKTEKNLND---FAVGYAKSNRSTCKGCEQKIEKGHIRISKKMVNPEKPQLGMIDNWYH 156
Query: 60 IDCIL 64
C +
Sbjct: 157 TSCFI 161
>gi|327262609|ref|XP_003216116.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 3 [Anolis
carolinensis]
Length = 1010
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
+K + + AK+GR+ CKKC I ++R+A M +P GK+ WHH C +K+ R
Sbjct: 6 EKPYRAEYAKSGRASCKKCGDNIAKDSLRLAIMVQSPMFDGKVPHWHHFSCF---WKRAR 62
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ D+ G+ +L EDQE++
Sbjct: 63 LISHA-----DVDGFSELRWEDQEKI 83
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 2 SDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHH 59
+ K E N D F V AK+ RS CK C+QKI+ G +RI+K NP G + W+H
Sbjct: 101 AGKTEKNLND---FAVGYAKSNRSTCKGCEQKIEKGHIRISKKMVNPEKPQLGMIDNWYH 157
Query: 60 IDCIL 64
C +
Sbjct: 158 TSCFI 162
>gi|296230268|ref|XP_002760624.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Callithrix
jacchus]
Length = 1013
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDIEVD------GFSELRWDDQQKV 85
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H DC + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPDCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|335296118|ref|XP_003357689.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Sus scrofa]
Length = 1018
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHAIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDIEVD------GFSELRWDDQQKV 85
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H +C ++ +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGHVRLSKKMLDPEKPQLGMIDRWYHPNCFVQ---NRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLTAEDKEALKKQLP 200
>gi|74197055|dbj|BAE35080.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>gi|390980986|pdb|4AV1|A Chain A, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
gi|390980987|pdb|4AV1|B Chain B, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
gi|390980988|pdb|4AV1|C Chain C, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
gi|390980989|pdb|4AV1|D Chain D, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
Length = 223
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V
Sbjct: 25 HSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHS 84
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R +++ G+ +L +DQ++V
Sbjct: 85 IRHPDVEVD------GFSELRWDDQQKV 106
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 133 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 189
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 190 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 221
>gi|6978455|ref|NP_037195.1| poly [ADP-ribose] polymerase 1 [Rattus norvegicus]
gi|3123251|sp|P27008.4|PARP1_RAT RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|2896792|gb|AAC53544.1| poly(ADP-ribose) polymerase [Rattus norvegicus]
gi|55250408|gb|AAH85765.1| Poly (ADP-ribose) polymerase 1 [Rattus norvegicus]
gi|149040870|gb|EDL94827.1| poly (ADP-ribose) polymerase family, member 1 [Rattus norvegicus]
Length = 1014
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDTEVD------GFSELRWDDQQKV 85
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPTCFV---KNRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L+ ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLP 200
>gi|74141622|dbj|BAE38574.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>gi|350539795|ref|NP_001233650.1| poly [ADP-ribose] polymerase 1 [Cricetulus griseus]
gi|17380223|sp|Q9R152.3|PARP1_CRIGR RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|5616520|gb|AAD45817.1|AF168781_1 poly ADP-ribose polymerase [Cricetulus griseus]
Length = 1013
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPTCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEVLKKQLPGVKSEGKRKGD 211
>gi|348553190|ref|XP_003462410.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Cavia porcellus]
Length = 1011
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRAEYAKSGRASCKKCGESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDIEVD------GFSELRWDDQQKV 85
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H DC + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPDCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + + G+ LT ED+E + + P
Sbjct: 169 ELGFRPEYSANQLKGFSLLTAEDKETLKKQLP 200
>gi|20806109|ref|NP_031441.2| poly [ADP-ribose] polymerase 1 [Mus musculus]
gi|15080598|gb|AAH12041.1| Poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
gi|26326859|dbj|BAC27173.1| unnamed protein product [Mus musculus]
gi|26353740|dbj|BAC40500.1| unnamed protein product [Mus musculus]
gi|148681205|gb|EDL13152.1| poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
Length = 1014
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>gi|74198526|dbj|BAE39743.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>gi|74214619|dbj|BAE31150.1| unnamed protein product [Mus musculus]
Length = 973
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>gi|317455323|pdb|3ODA|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455324|pdb|3ODA|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455325|pdb|3ODA|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455326|pdb|3ODA|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455327|pdb|3ODA|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455328|pdb|3ODA|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455329|pdb|3ODA|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455330|pdb|3ODA|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|388604239|pdb|4DQY|A Chain A, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
gi|388604242|pdb|4DQY|D Chain D, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 116
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 26 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 85
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 86 HPDVEVD------GFSELRWDDQQKV 105
>gi|159164223|pdb|2DMJ|A Chain A, Solution Structure Of The First Zf-Parp Domain Of Human
Poly(Adp-Ribose)polymerase-1
Length = 106
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 13 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 72
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 73 HPDVEVD------GFSELRWDDQQKV 92
>gi|86438265|gb|AAI12502.1| PARP1 protein [Bos taurus]
Length = 232
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ W+H+ C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCKESIPKDSIRMAFMVQSPMFDGKIPHWYHLSCFWKVGFSIW 65
Query: 72 QTTAKIEVVDDMGGWDD 88
++E ++ WDD
Sbjct: 66 HPDVEVEGFSEL-RWDD 81
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F AK+ RS CK C +KID G VR++K P G + W+H C ++ K+
Sbjct: 115 DFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQLGMVDCWYHPKCFVQ---KRE 171
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT EDQE + + P
Sbjct: 172 ELGFRPEFSASQLMGFSVLTAEDQETLKKQLP 203
>gi|116283598|gb|AAH18620.1| PARP1 protein [Homo sapiens]
Length = 232
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGD 211
>gi|33878477|gb|AAH14206.1| PARP1 protein [Homo sapiens]
Length = 250
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGD 211
>gi|161076197|ref|NP_001104452.1| Poly-(ADP-ribose) polymerase, isoform B [Drosophila melanogaster]
gi|548585|sp|P35875.1|PARP_DROME RecName: Full=Poly [ADP-ribose] polymerase; Short=PARP; AltName:
Full=NAD(+) ADP-ribosyltransferase; Short=ADPRT;
AltName: Full=Poly[ADP-ribose] synthase
gi|303546|dbj|BAA02964.1| poly(ADP-ribose) polymerase [Drosophila melanogaster]
gi|3044062|gb|AAC24518.1| poly(ADP-ribose) polymerase [Drosophila melanogaster]
gi|51092107|gb|AAT94467.1| RE04933p [Drosophila melanogaster]
gi|158529679|gb|EDP28045.1| Poly-(ADP-ribose) polymerase, isoform B [Drosophila melanogaster]
gi|220951806|gb|ACL88446.1| Parp-PA [synthetic construct]
Length = 994
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C+QKI+ VR+ K Y+ G WHH++C F +
Sbjct: 109 KDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLEC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R +DM G+ L +DQ +V + P
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIP 197
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + A+TGR+ CK CK I T+RIA M + F K+ W H C FK QR ++
Sbjct: 7 YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCF---FKNQRPSS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
V D+ +L DQ+E L+ E+++E
Sbjct: 64 -----VGDIQNIGNLRFADQKE-LTDLVENIQE 90
>gi|195475738|ref|XP_002090141.1| GE20224 [Drosophila yakuba]
gi|194176242|gb|EDW89853.1| GE20224 [Drosophila yakuba]
Length = 993
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C+QKI VR+ K Y+ G W+H+DC F +
Sbjct: 109 KDFGIEYAKSSRSTCRGCEQKIIKDLVRLRKTVYDTEVGMKYGGQPLWYHLDC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERK 118
R + D+M G L +DQ EV + P + K ++PE K
Sbjct: 165 LRSELGWFDSGDNMPGIKSLADDDQAEVKNALP-----AIKSEELPETK 208
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + A+TGR+ CK CK I +RIA M + F K+ W H C FK QR +
Sbjct: 7 YIAEYARTGRATCKGCKSSIPMDNLRIAVMVQSAFHDAKVPNWFHKTCF---FKNQRPCS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLR 106
V D+ + +L DQ+E L+ E+L+
Sbjct: 64 -----VGDIYNFGNLRFADQKE-LTDLVENLQ 89
>gi|76156440|gb|AAX27650.2| SJCHGC03951 protein [Schistosoma japonicum]
Length = 165
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F VD AK+ RS C KCK +ID ++RIA++ +P GK+ +W H C +
Sbjct: 7 FDVDYAKSNRSKCNKCKIEIDQNSLRIARLVQSPNFDGKIPRWFHYKCFWA-------SK 59
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
IE ++ +D + EDQE++
Sbjct: 60 ILIESTSEIKNFDSIRWEDQEKI 82
>gi|22138110|gb|AAM93435.1| PARP-E protein [Drosophila melanogaster]
Length = 613
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C+QKI+ VR+ K Y+ G WHH++C F +
Sbjct: 109 KDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLEC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R +DM G+ L +DQ +V + P
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIP 197
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + A+TGR+ CK CK I T+RIA M + F K+ W H C FK QR ++
Sbjct: 7 YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCF---FKNQRPSS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
V D+ +L DQ+E L+ E+++E
Sbjct: 64 -----VGDIQNIGNLRFADQKE-LTDLVENIQE 90
>gi|321159578|pdb|2L30|A Chain A, Human Parp-1 Zinc Finger 1
Length = 108
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
>gi|161076201|ref|NP_001015396.2| Poly-(ADP-ribose) polymerase, isoform C [Drosophila melanogaster]
gi|158529681|gb|EAA46046.2| Poly-(ADP-ribose) polymerase, isoform C [Drosophila melanogaster]
Length = 804
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C+QKI+ VR+ K Y+ G WHH++C F +
Sbjct: 109 KDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLEC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R +DM G+ L +DQ +V + P
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIP 197
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + A+TGR+ CK CK I T+RIA M + F K+ W H C FK QR ++
Sbjct: 7 YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCF---FKNQRPSS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
V D+ +L DQ+E L+ E+++E
Sbjct: 64 -----VGDIQNIGNLRFADQKE-LTDLVENIQE 90
>gi|74193585|dbj|BAE22758.1| unnamed protein product [Mus musculus]
Length = 190
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCIL 64
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C +
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV 164
>gi|241644606|ref|XP_002409668.1| poly [ADP-ribose] polymerase, putative [Ixodes scapularis]
gi|215501402|gb|EEC10896.1| poly [ADP-ribose] polymerase, putative [Ixodes scapularis]
Length = 963
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEV 66
+D ++F + AK+ +S CK C +KI G VRI+K+ Y+ S G + QW+H+DC
Sbjct: 56 DDLRDFSTEYAKSNKSTCKGCSEKIAKGEVRISKLDYDGAFSKMRGPVPQWYHVDC---- 111
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQ 94
F K+R D + G+ L +DQ
Sbjct: 112 FVKKRDDLDYTLGADSIPGFMSLGVDDQ 139
>gi|294953569|ref|XP_002787829.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902853|gb|EER19625.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1053
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEV 66
P + + +F + AKTGRS C+ C I +R+ +M +P GK W+H C
Sbjct: 2 PYYDQNFDFIAEYAKTGRSHCRACHTNIPDKALRLGRMVQSPHFDGKAPTWYHAKC---- 57
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
F + R A I D+ G+ L DQEE+ +R
Sbjct: 58 FWRGRSLPASI---SDIYGFSSLKFPDQEEIEARI 89
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG---KMKQWHHIDCILEVFKKQRQT 73
V+ AK+ RS C+ C + ID G +R+ G G G + WHH+ C L+ + +
Sbjct: 114 VEYAKSSRSECRGCYKLIDRGELRLGIDGIKETGYGFNVEATDWHHVKCFLQ---RGDFS 170
Query: 74 TAKIEVVDDMGGWDDLTPEDQE 95
++ VD + G L P D++
Sbjct: 171 AMRLSSVDQLRGISGLDPADRD 192
>gi|431906515|gb|ELK10638.1| Poly [ADP-ribose] polymerase 1 [Pteropus alecto]
Length = 1011
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIW 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C ++ +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPSCFVQ---SRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L+PED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLSPEDKEALKKQLP 200
>gi|417405597|gb|JAA49506.1| Putative nad+ adp-ribosyltransferase parp required for poly-adp
ribosylation of nuclear [Desmodus rotundus]
Length = 1014
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHTIW 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F V+ AK+ RS CK C +KID G VR++K +P G + +W+H C +E +
Sbjct: 112 DFAVEYAKSNRSTCKGCMEKIDKGQVRLSKKMLDPEKPQLGMIDRWYHPHCFVE---NRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L PED+E++ + P E + D
Sbjct: 169 ELNFRPEYSASQLKGFSLLAPEDKEDLKKQLPGVKSEGKRKSD 211
>gi|294950813|ref|XP_002786786.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901140|gb|EER18582.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 981
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEV 66
P + + +F + AKTGRS C+ C I +R+ +M +P GK W+H C
Sbjct: 2 PYYDQNFDFIAEYAKTGRSHCRACHTNIPDKALRLGRMVQSPHFDGKAPTWYHAKC---- 57
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSR 100
F + R A I D+ G+ L DQEE+ +R
Sbjct: 58 FWRGRSLPASI---SDIYGFSSLKFPDQEEIEAR 88
>gi|348681372|gb|EGZ21188.1| hypothetical protein PHYSODRAFT_491689 [Phytophthora sojae]
Length = 285
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK---MKQWHHIDCILE 65
V+ AK+GRS C+KC++ ID G VR+ KM + GK ++ W H DC LE
Sbjct: 180 VELAKSGRSKCRKCRESIDKGAVRVGKMMKDKVAGGKVMEIRVWFHEDCFLE 231
>gi|390179180|ref|XP_002137908.2| GA25584 [Drosophila pseudoobscura pseudoobscura]
gi|388859746|gb|EDY68466.2| GA25584 [Drosophila pseudoobscura pseudoobscura]
Length = 995
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C QKI +RI K ++ G WHH++C F +
Sbjct: 109 KDFGIEYAKSSRSSCRGCDQKISKDQIRIRKTVFDTEVGMKYGGQPLWHHLEC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R + +++ G+ L ED+ EV+ P
Sbjct: 165 LRSELGWFDTGENIPGYKSLKAEDKAEVIRVLP 197
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GR+ CK CK I +RIA M + F K+ W H C F+KQR T+
Sbjct: 7 YMAEYAKSGRASCKGCKSAIPMKELRIAVMVQSAFHDAKVPNWFHKRCF---FEKQRPTS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
V D+ +++L +DQ+E+
Sbjct: 64 -----VGDIQNFENLRFDDQKEL 81
>gi|357110984|ref|XP_003557295.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1
[Brachypodium distachyon]
Length = 975
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK CK I +R+ KM + G M W+H CI+ K+ Q
Sbjct: 10 VEYAKSGRSSCKSCKSPIGKDALRLGKMVQSTQFDGFMPLWNHASCIIS---KKNQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G D L +DQE++
Sbjct: 63 IKSVDDVEGIDALRWDDQEKI 83
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
++ A++ R+ C+ C +KI G VR++ G G W+H+ C LE+ TA
Sbjct: 106 IEVAQSARASCRHCSEKIAKGNVRVSA---KVEGQG----WYHVSCFLEM-----SPTAT 153
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
+E + GW+ L+ ED+ +
Sbjct: 154 VEKIP---GWEALSHEDKGAI 171
>gi|195156920|ref|XP_002019344.1| GL12354 [Drosophila persimilis]
gi|194115935|gb|EDW37978.1| GL12354 [Drosophila persimilis]
Length = 992
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C QKI +RI K ++ G WHH++C F +
Sbjct: 108 KDFGIEYAKSSRSSCRGCDQKISKDQIRIRKTVFDTEVGMKYGGQPLWHHLEC----FAQ 163
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R + +++ G+ L ED+ EV+ P
Sbjct: 164 LRSELGWFDTGENIPGYKSLKAEDKAEVIRVLP 196
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GR+ CK CK I +RIA M + F K+ W H C F+KQR T+
Sbjct: 7 YMAEYAKSGRASCKGCKSAIPMKELRIAVMVQSAFHDAKVPNWFHKRCF---FEKQRPTS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
V D+ +++L +DQ+E+
Sbjct: 64 -----VGDIQNFENLRFDDQKEL 81
>gi|126306928|ref|XP_001368346.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Monodelphis domestica]
Length = 1011
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKPYRAEYAKSGRASCKKCGESIAKDSLRLAIMVQSPMFDGKIPNWHHYAC----FWKRG 61
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
++ E+ ++ G+ +L +DQ+++
Sbjct: 62 LVISQAEL--EVDGFLELRWDDQQKI 85
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
NF + AK+ RS CK C+QKI+ G VR++K +P G + +W+H DC F K R
Sbjct: 112 NFAAEYAKSNRSACKGCQQKIEKGQVRLSKKMIDPEKPQLGMIDRWYHPDC----FVKCR 167
Query: 72 QTTAKI--EVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ G+ L PED+E + + P E + D
Sbjct: 168 DELGFLPQYSASQFKGFSILQPEDKETLKKQLPAVKTEGKRKGD 211
>gi|74144748|dbj|BAE27352.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+ M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMTIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>gi|74142035|dbj|BAE41080.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+ M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMTIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>gi|391332355|ref|XP_003740601.1| PREDICTED: poly [ADP-ribose] polymerase-like [Metaseiulus
occidentalis]
Length = 973
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E D F VD AK+GR+ C+ CK I +R+A + + GKM +W H C K
Sbjct: 3 EVDLPFKVDYAKSGRASCRSCKSPISKDDLRLASVVQSSSFDGKMTKWFHFACFF--LKN 60
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
+ ++T D+ G+ ++ +DQ+ R + + D+ RK S+ EKK+ T
Sbjct: 61 KPRSTG------DIDGFSNIKYDDQK----RIEKKVGSGGGTADLVGRKSVSAKEKKNAT 110
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYN---PFGSGKMKQW 57
+S KE+ N + + V+ AKT RS C+ C I VRI+KM Y+ G W
Sbjct: 101 VSAKEKKNATLE--YSVEYAKTSRSTCRGCDMLIAKDQVRISKMVYDSERALAYGPYPGW 158
Query: 58 HHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
+H++C F R+ D+ G+ L E+Q+ + + P
Sbjct: 159 YHVEC----FIANREQLQWFLPAQDLPGYKSLGIEEQKMLKEKIP 199
>gi|130782|sp|P11103.3|PARP1_MOUSE RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1; Short=msPARP
gi|49894|emb|CAA32421.1| unnamed protein product [Mus musculus]
Length = 1013
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V + R
Sbjct: 6 ERLYRVQYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGQSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFAAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTP 130
+ + E + G+ L+ ED+E + + P E + D ++ + E K
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD----EVDGTDEVAKKKS 224
Query: 131 KKKAVAYFCLIRPLCFQN 148
+K+ Y L + L QN
Sbjct: 225 RKETDKYSKLEKALKAQN 242
>gi|224066273|ref|XP_002302058.1| predicted protein [Populus trichocarpa]
gi|222843784|gb|EEE81331.1| predicted protein [Populus trichocarpa]
Length = 996
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
NP+ K + + AK+ RS CK CK ID +R+ KM G M W+H CIL
Sbjct: 3 NPQ--KAWKAEYAKSARSSCKTCKSIIDKEILRLGKMVQAKQFDGFMPMWNHASCIL--- 57
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
KK Q I+ +DD+ G + L EDQ+ +
Sbjct: 58 KKANQ----IKFIDDVEGIESLRWEDQQRI 83
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQT 73
+ ++ ++T R+ CK C +KI G VRI+ P G G + WHH +C ++++ +
Sbjct: 114 YGIELSQTSRATCKSCSEKIMKGEVRISS---KPDGQGPRGLAWHHANCFMDLYPSVQ-- 168
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLS---RFPESLRESNKDRDVPERKIPSSSEK 125
VD + GW+ + DQ V S + P + + K+ + ++ SS K
Sbjct: 169 ------VDKLSGWESIAAPDQAVVHSLVKKVPSTAKTGIKNEGKEDEELQQSSSK 217
>gi|427780093|gb|JAA55498.1| Putative poly adp-ribose polymerase 1 [Rhipicephalus pulchellus]
Length = 987
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMK----QWHHIDCILE 65
ED K+F + AK+G+S CK C +KI G VRI+K Y+ G KM+ W H+DC ++
Sbjct: 56 EDLKDFATEYAKSGKSTCKGCNEKIAKGEVRISKNDYDS-GYAKMRGAIPMWFHVDCFVQ 114
>gi|383864408|ref|XP_003707671.1| PREDICTED: poly [ADP-ribose] polymerase-like [Megachile rotundata]
Length = 991
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR-QT 73
+ V+ AK+ R+ C+ CK I+ G +R+A + +P G + +W+H DC F KQR +
Sbjct: 7 YSVEYAKSARASCQNCKSSIEKGVLRLAVIVQSPVHDGLIPKWYHPDCF---FLKQRPKD 63
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
TA D +D++ EDQ+ + + E+
Sbjct: 64 TA------DFANFDNIRWEDQKIIEKKIEEA 88
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEV 66
K+F V AK+ +S CK C+++I G +R++K + G + +W+H++C +V
Sbjct: 114 KDFLVQYAKSNKSTCKACEERIVQGEIRVSKKDFESEQGRRYGGIDRWYHLECFAKV 170
>gi|440790223|gb|ELR11506.1| Poly(ADPribose) polymerase catalytic domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 774
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
+F V+ A + R+ C+ C KI +R+ K+ ++ G + +WHH++C L+ + +
Sbjct: 2 DFIVEYASSCRANCRVCWNKIPKAELRMGKLSFSRKFDGTICEWHHLNCFLKRYTVEAAE 61
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
I+ G DD+ ED+E++L+ F S
Sbjct: 62 APSIK------GLDDIRWEDKEKLLNTFGAS 86
>gi|115471709|ref|NP_001059453.1| Os07g0413700 [Oryza sativa Japonica Group]
gi|75139007|sp|Q7EYV7.1|PARP1_ORYSJ RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=NAD(+) ADP-ribosyltransferase 1;
Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase 1
gi|34394043|dbj|BAC84104.1| putative poly(ADP)-ribose polymerase [Oryza sativa Japonica Group]
gi|113610989|dbj|BAF21367.1| Os07g0413700 [Oryza sativa Japonica Group]
gi|222636887|gb|EEE67019.1| hypothetical protein OsJ_23951 [Oryza sativa Japonica Group]
Length = 977
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 29/117 (24%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
++ AK+ R+ C++C +KI GTVR++ G G W+H C LE+ +
Sbjct: 106 IEVAKSARTSCRRCGEKIKKGTVRVSS---KLEGQG----WYHASCFLEM--------SP 150
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKK 133
V++ GW+ L+ ED+ VL D+ ++ PSS + SK K+K
Sbjct: 151 AATVENFSGWEILSHEDKRAVL--------------DLVKKDAPSSGQTSSKGSKRK 193
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GRS CK C+ I +R+ KM G M W+H CIL K+ Q
Sbjct: 10 AEYAKSGRSSCKSCRSPIGKDQLRLGKMVQATQFDGLMPMWNHASCILS---KKNQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G D L +DQE++
Sbjct: 63 IKSVDDVEGIDTLRWDDQEKI 83
>gi|313229492|emb|CBY18306.1| unnamed protein product [Oikopleura dioica]
Length = 999
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F + +K+ R+ CK CK KID VR+A+M + G W H DC F K +Q
Sbjct: 9 FKTEYSKSNRASCKICKSKIDKDVVRMARMMKSRHHDGVDPNWAHFDCF---FGKAKQWG 65
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
K +D + G+ L +DQE +
Sbjct: 66 LKTGEIDKIEGFHSLRLDDQERL 88
>gi|326492215|dbj|BAK01891.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 447
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVF 67
+P V+ AK+GRS CK C I G +R+ ++P G K W+H+ C F
Sbjct: 4 SPAAQATVSVEYAKSGRSSCKGCSAAIAKGALRLGATAHDPRGYDSTK-WYHVAC----F 58
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKS 127
+E V+ G+D + +D+EE+ L ++NK + S KK+
Sbjct: 59 PASSHPLGPVEEVE---GFDSIKDDDREEL-----RELEKNNKRDQTAVSPLEVPSPKKA 110
Query: 128 KTPKKKAVA 136
K K VA
Sbjct: 111 KVSPKAGVA 119
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+ RS CK C I G +RI ++P G K W+H+ C ++
Sbjct: 126 VEYAKSARSTCKGCNASIAKGALRIGVSAHDPRGFDSTK-WYHVACF-------PTSSHP 177
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
+ V+ + G+D + +D+ E+
Sbjct: 178 LGPVEKLKGFDSIKDDDRGEL 198
>gi|337424|gb|AAB59447.1| poly(ADP-ribose) synthetase [Homo sapiens]
Length = 1014
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+ R+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSERASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>gi|395537486|ref|XP_003770730.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Sarcophilus
harrisii]
Length = 1115
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
NF + AK+ RS CK C+QKI+ G VR++K +P G + +W+H DC F K R
Sbjct: 215 NFAAEYAKSNRSACKGCQQKIEKGQVRLSKKMIDPEKPQLGMIDRWYHPDC----FVKCR 270
Query: 72 QTTAKI--EVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + G+ L PED+E + + P E + D
Sbjct: 271 DELGFLPQYSASQLKGFSILQPEDKETLKKQLPAVKTEGKRKGD 314
>gi|195998375|ref|XP_002109056.1| hypothetical protein TRIADDRAFT_52698 [Trichoplax adhaerens]
gi|190589832|gb|EDV29854.1| hypothetical protein TRIADDRAFT_52698 [Trichoplax adhaerens]
Length = 749
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF-GSGKMKQWHHIDCILEVFKKQRQT 73
F + AK+ RS C CK+ I ++RIA M + + K+ +W+H C F+K+
Sbjct: 77 FKAEYAKSKRSLCNACKKNIGKNSLRIAAMLSSWYVDDAKVAKWYHYSCF---FRKK--- 130
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLSR---------FPESLRESNKDRDVPERKIPSSSE 124
I D+ G++ L PEDQE++ +R + ++ S + ++P +S+
Sbjct: 131 --NISNEGDIDGFNSLRPEDQEKIRNRIDPTTQNQGYSKTSTSSAQAHEIPSEGSSNSAI 188
Query: 125 KKSKTPKKKA 134
K T K+K+
Sbjct: 189 NKEDTGKRKS 198
>gi|30684908|ref|NP_850165.1| Poly [ADP-ribose] polymerase 1 [Arabidopsis thaliana]
gi|73921622|sp|Q9ZP54.2|PARP1_ARATH RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=NAD(+) ADP-ribosyltransferase 1;
Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase
1
gi|4038491|emb|CAA10482.1| poly(ADP-ribose) polymerase [Arabidopsis thaliana]
gi|20259524|gb|AAM13882.1| putative poly (ADP-ribose) polymerase [Arabidopsis thaliana]
gi|23297589|gb|AAN12901.1| putative poly(ADP-ribose) polymerase [Arabidopsis thaliana]
gi|330253433|gb|AEC08527.1| Poly [ADP-ribose] polymerase 1 [Arabidopsis thaliana]
Length = 983
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK I+ R+ K+ + G M W+H CIL + T +
Sbjct: 10 AEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL-------KKTKQ 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G + L EDQ+++
Sbjct: 63 IKSVDDVEGIESLRWEDQQKI 83
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ ++T R+GC+KC +KI G VRI P G M WHH C LE+ +
Sbjct: 114 YGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM--WHHAKCFLEMSSSTELES 171
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESL----------RESNKDRDVPERKIPSSSE 124
GW + DQE +L ++L R++N R +RK S
Sbjct: 172 LS--------GWRSIPDSDQEALLPLVKKALPAAKTETAEARQTN-SRAGTKRKNDSVDN 222
Query: 125 KKSKTPK 131
+KSK K
Sbjct: 223 EKSKLAK 229
>gi|449468536|ref|XP_004151977.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Cucumis sativus]
gi|449496917|ref|XP_004160262.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Cucumis sativus]
Length = 980
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+ RS CK CK I +R KM G M W+H CIL KK +Q
Sbjct: 10 VEYAKSSRSSCKTCKSPIQKENLRFGKMVQATQFDGFMPMWNHAACIL---KKAKQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ +DD+ G D L EDQ ++
Sbjct: 63 IKSIDDVEGLDSLRWEDQLKI 83
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 12/84 (14%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQT 73
+ ++ ++T R+ CK CKQKI G VR++ + G G K W+H +C +E +
Sbjct: 103 YGIEVSQTSRASCKHCKQKIMKGEVRLSTV---LDGKGTKGLAWYHANCYME-----QCP 154
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEV 97
+A++E + GW +L P DQ +
Sbjct: 155 SAQVE---KLAGWQNLPPSDQAAI 175
>gi|218199481|gb|EEC81908.1| hypothetical protein OsI_25738 [Oryza sativa Indica Group]
Length = 977
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GRS CK C+ I +R+ KM G M W+H CIL K+ Q
Sbjct: 10 AEYAKSGRSSCKSCRSPIGKDQLRLGKMVQATQFDGFMPMWNHASCILS---KKNQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G D L +DQE++
Sbjct: 63 IKSVDDVEGIDTLRWDDQEKI 83
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 29/117 (24%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
++ AK+ R+ C++C +KI G VR++ G G W+H C LE+ +
Sbjct: 106 IEVAKSARTSCRRCGEKITKGAVRVSS---KLEGQG----WYHASCFLEM--------SP 150
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKK 133
V++ GW+ L+ ED+ VL D+ ++ PSS + SK K+K
Sbjct: 151 AATVENFSGWEILSHEDKRAVL--------------DLVKKDAPSSGQTSSKGSKRK 193
>gi|313241682|emb|CBY33906.1| unnamed protein product [Oikopleura dioica]
Length = 369
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F + +K+ R+ CK CK KID VR+A+M + G W H DC F K +Q
Sbjct: 9 FKTEYSKSNRASCKICKSKIDKDVVRMARMMKSRHHDGVDPNWAHFDCF---FGKAKQWG 65
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
K +D + G+ L +DQE +
Sbjct: 66 LKTGEIDKIEGFHSLRLDDQERL 88
>gi|297826573|ref|XP_002881169.1| hypothetical protein ARALYDRAFT_902162 [Arabidopsis lyrata subsp.
lyrata]
gi|297327008|gb|EFH57428.1| hypothetical protein ARALYDRAFT_902162 [Arabidopsis lyrata subsp.
lyrata]
Length = 979
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK I+ R+ K+ + G M W+H CIL T +
Sbjct: 10 AEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL-------NKTKQ 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G + L EDQ+++
Sbjct: 63 IKSVDDVEGIESLRWEDQQKI 83
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ ++T R+GC+KC +KI G VRI P G M WHH C LE+ +
Sbjct: 110 YGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM--WHHAKCFLEMSSSTELES 167
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESL----------RESNKDRDVPERKIPSSSE 124
GW + DQE +L ++L R++N R +RK S
Sbjct: 168 LS--------GWRSIPDADQEVLLPLVKKALPVAKTETAEARQTN-SRAGTKRKNDSGDN 218
Query: 125 KKSKTPK 131
+KSK K
Sbjct: 219 EKSKLAK 225
>gi|147775930|emb|CAN75718.1| hypothetical protein VITISV_037618 [Vitis vinifera]
Length = 1016
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQTTA 75
++ ++T R+ CK+C QKI G VRI+ P G G K WHH +C LE+ +
Sbjct: 109 IEVSQTSRATCKRCSQKIMKGEVRISS---KPDGQGAKGLAWHHANCFLEM--------S 157
Query: 76 KIEVVDDMGGWDDLTPED 93
+++ + GWD L+ D
Sbjct: 158 PSTLIEKLSGWDGLSSSD 175
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK ID R+ KM G M W+H CIL KK Q
Sbjct: 10 AEYAKSSRSSCKTCKTPIDKEKFRLGKMVQASQFDGFMPMWNHAGCIL---KKANQ---- 62
Query: 77 IEVVDDMGG-----WDD 88
I+ +DD+ G WDD
Sbjct: 63 IKSLDDVEGIELLRWDD 79
>gi|281212108|gb|EFA86269.1| SMAD/FHA domain-containing protein [Polysphondylium pallidum
PN500]
Length = 693
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 DKNFWVDRAKTGRSGCK--KCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVF 67
+ + ++ AK+GRS CK +CK I T+RIAK+ + G + H C+ +
Sbjct: 3 NNTYKIEYAKSGRSSCKAKQCKGNIPKETIRIAKVYPSARFEDDGTAVDYFHPQCLFDSQ 62
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ R+TT K+E ++D+ G+++L+ +DQ +
Sbjct: 63 VRARKTTKKVEEIEDLEGFEELSKKDQAAI 92
>gi|8777472|dbj|BAA97052.1| unnamed protein product [Arabidopsis thaliana]
Length = 774
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K+ N D + AK+ RS CKKC Q I +R+ + N F MKQWHH+ C
Sbjct: 397 KDVKNSPDSSKVISEYAKSSRSTCKKCSQTIAAKELRLGLVTRN-FRGFDMKQWHHLGCF 455
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ I V+D+GG+ +L DQ+ +
Sbjct: 456 -------PVDSDPIVSVEDIGGFSELQSGDQDAL 482
>gi|75216547|sp|Q9ZSV1.1|PARP1_MAIZE RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=NAD(+) ADP-ribosyltransferase 1;
Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase
1
gi|3928871|gb|AAC79704.1| poly(ADP)-ribose polymerase [Zea mays]
gi|414588861|tpg|DAA39432.1| TPA: poly [ADP-ribose] polymerase 1(NAD(+) ADP-ribosyltransferase
1) [Zea mays]
Length = 980
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GR+ CK C+ I +R+ KM G M W+H CI F K+ Q
Sbjct: 10 AEYAKSGRASCKSCRSPIAKDQLRLGKMVQASQFDGFMPMWNHARCI---FSKKNQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G D L +DQE++
Sbjct: 63 IKSVDDVEGIDALRWDDQEKI 83
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRI-AKM-GYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
++ A + R+ C++C +KI G+VR+ AK+ P G W+H +C EV
Sbjct: 106 IEIAPSARTSCRRCSEKITKGSVRLSAKLESEGPKGI----PWYHANCFFEV-------- 153
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVL 98
+ V+ GWD L+ ED+ +L
Sbjct: 154 SPSATVEKFSGWDTLSDEDKRTML 177
>gi|159163219|pdb|1V9X|A Chain A, Solution Structure Of The First Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 114
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK I+ R+ K+ + G M W+H CIL + T +
Sbjct: 13 AEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL-------KKTKQ 65
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G + L EDQ+++
Sbjct: 66 IKSVDDVEGIESLRWEDQQKI 86
>gi|320168213|gb|EFW45112.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 968
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
+F + AK+ RS CK+C+ ID +RI +M +PF G++ W H+ C +
Sbjct: 4 DFIAEYAKSNRSSCKQCQSTIDKDELRIGEMVQSPFHDGRIPVWRHVKCHFAKGNRGLTA 63
Query: 74 TAKIEVVDDM 83
A IE D++
Sbjct: 64 FAMIEGRDNL 73
>gi|297830036|ref|XP_002882900.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328740|gb|EFH59159.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 723
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEV 79
AK+ RS CK C +KI ++R+ + P G M +WHH DC F ++ A
Sbjct: 84 AKSNRSSCKSCSKKIAVKSLRLGLISKGP-GGVDMTRWHHFDC----FPTDSESIAS--- 135
Query: 80 VDDMGGWDDLTPEDQEEVLSRFPESLRE-SNKDRDVPERKI 119
VDD+ G L EDQ+ + + +E + K RD + K+
Sbjct: 136 VDDIQGLSVLEKEDQDALTKLVEQGGQEPAKKQRDEKKEKV 176
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
KE D + AK+ RS CKKC Q I +R+ + N F M QWHH+ C
Sbjct: 346 KETTGSPDSSKVISEYAKSSRSTCKKCSQTIAAKELRLGLVTRN-FRGFDMTQWHHVGCF 404
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ I V+D+GG+ +L DQ+ +
Sbjct: 405 -------PVDSDPISSVEDVGGFSELQSGDQDAL 431
>gi|219887125|gb|ACL53937.1| unknown [Zea mays]
Length = 446
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GR+ CK C+ I +R+ KM G M W+H CI F K+ Q
Sbjct: 10 AEYAKSGRASCKSCRSPIAKDQLRLGKMVQASQFDGFMPMWNHARCI---FSKKNQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G D L +DQE++
Sbjct: 63 IKSVDDVEGIDALRWDDQEKI 83
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRI-AKM-GYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
++ A + R+ C++C +KI G+VR+ AK+ P G W+H +C EV
Sbjct: 106 IEIAPSARTSCRRCSEKITKGSVRLSAKLESEGPKGI----PWYHANCFFEV-------- 153
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVL 98
+ V+ GWD L+ ED+ +L
Sbjct: 154 SPSATVEKFSGWDTLSDEDKRTML 177
>gi|428174146|gb|EKX43044.1| PARP1 poly polymerase [Guillardia theta CCMP2712]
Length = 989
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + AK+GR+ C+KCK I +R+ K +P G + W H+DC
Sbjct: 6 DKEHVAEYAKSGRASCRKCKNNIGKDVLRMGKYVQSPSFDGWVPMWFHVDCFF------G 59
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
AK E V D+ G +L+ EDQ+++
Sbjct: 60 GKGAKPE-VSDIAGMSELSFEDQKKI 84
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 2 SDKEEPNPEDDK----NFWVDRAKTGRSGCKKCKQKIDTGTVRIAK---MGYNPFGSGKM 54
S +P DD+ ++ V+ AK+ RS C+ C+ KI+ G +R+ + M PF
Sbjct: 95 SGGSKPADADDEGNIGDYKVEIAKSSRSECRGCESKIEAGNLRMGRIEAMDRRPFIP--T 152
Query: 55 KQWHHIDCIL 64
+WHH+DC+
Sbjct: 153 PKWHHLDCLF 162
>gi|42564175|ref|NP_188107.3| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
gi|75239130|sp|Q84JE8.1|ZDP_ARATH RecName: Full=Polynucleotide 3'-phosphatase ZDP; AltName: Full=DNA
nick sensor protein
gi|28392958|gb|AAO41914.1| putative DNA nick sensor protein [Arabidopsis thaliana]
gi|28827696|gb|AAO50692.1| putative DNA nick sensor protein [Arabidopsis thaliana]
gi|332642063|gb|AEE75584.1| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
Length = 694
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K+ N D + AK+ RS CKKC Q I +R+ + N F MKQWHH+ C
Sbjct: 317 KDVKNSPDSSKVISEYAKSSRSTCKKCSQTIAAKELRLGLVTRN-FRGFDMKQWHHLGCF 375
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ I V+D+GG+ +L DQ+ +
Sbjct: 376 -------PVDSDPIVSVEDIGGFSELQSGDQDAL 402
>gi|186510077|ref|NP_850586.2| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
gi|332642064|gb|AEE75585.1| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
Length = 684
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K+ N D + AK+ RS CKKC Q I +R+ + N F MKQWHH+ C
Sbjct: 307 KDVKNSPDSSKVISEYAKSSRSTCKKCSQTIAAKELRLGLVTRN-FRGFDMKQWHHLGCF 365
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ I V+D+GG+ +L DQ+ +
Sbjct: 366 -------PVDSDPIVSVEDIGGFSELQSGDQDAL 392
>gi|340373081|ref|XP_003385071.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Amphimedon
queenslandica]
Length = 883
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
+DD + + AK+ RS CK C++ I ++R+A+M P K+ W+H C F
Sbjct: 3 DDDPPYRTEYAKSNRSSCKACRETIAKDSLRMARMVQAPNFDAKIPHWYHFSC----FFG 58
Query: 70 QRQTTAKIEVVDDMGG--WDD 88
+ + + MGG WDD
Sbjct: 59 PKMKLVSVSQIGGMGGLRWDD 79
>gi|440301535|gb|ELP93921.1| poly ADP-ribose polymerase, putative, partial [Entamoeba invadens
IP1]
Length = 760
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI--LEVFKKQR 71
++ + +KT R CK C Q I+ G ++ K + F G QW+H +CI FK +
Sbjct: 6 SYRFEYSKTSRGSCKSCGQTIEQGELKYGKEVKSRFHDGVEVQWNHGECIKNTSAFKNTK 65
Query: 72 QTTAKIEVVDDMGGWDDLTPED----QEEVLSRFPESLRESNKDRDVPERKIPSSSEKKS 127
TT K GWD L +D +EE+ FP + + + +++ ER + +
Sbjct: 66 LTTTK--------GWDKLRWDDFLALKEEMQDDFPMTDDQEKEFKEINERFWEARDKLSG 117
Query: 128 KTPKKKAVAYFCLIRPLCFQN 148
TPK +IR L +N
Sbjct: 118 VTPK--------IIRQLMEEN 130
>gi|302784218|ref|XP_002973881.1| hypothetical protein SELMODRAFT_100128 [Selaginella
moellendorffii]
gi|300158213|gb|EFJ24836.1| hypothetical protein SELMODRAFT_100128 [Selaginella
moellendorffii]
Length = 969
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E D + + AK+ R+ C C KID +R+ +M +P G + WHH CI +
Sbjct: 2 EPDHPWRAEYAKSSRAACGACHDKIDKDELRLGRMVESPKFDGWIPVWHHYSCI----AR 57
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
++ T + IE VD G+D+L DQ+++
Sbjct: 58 KKNTISSIEDVD---GFDNLRWGDQKKL 82
>gi|90995400|gb|AAM69280.2|AF453835_1 phosphoesterase [Arabidopsis thaliana]
Length = 637
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K+ N D + AK+ RS CKKC Q I +R+ + N F MKQWHH+ C
Sbjct: 260 KDVKNSPDSSKVISEYAKSSRSTCKKCSQTIAAKELRLGLVTRN-FRGFDMKQWHHLGCF 318
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ I V+D+GG+ +L DQ+ +
Sbjct: 319 -------PVDSDPIVSVEDIGGFSELQSGDQDAL 345
>gi|317455307|pdb|3OD8|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455308|pdb|3OD8|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455309|pdb|3OD8|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455310|pdb|3OD8|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455311|pdb|3OD8|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455312|pdb|3OD8|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455313|pdb|3OD8|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455314|pdb|3OD8|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
Length = 116
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R A +P GK+ W+H C +V R
Sbjct: 26 DKLYRVEYAKSGRASCKKCSESIPKDSLRXAIXVQSPXFDGKVPHWYHFSCFWKVGHSIR 85
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 86 HPDVEVD------GFSELRWDDQQKV 105
>gi|302771529|ref|XP_002969183.1| hypothetical protein SELMODRAFT_90144 [Selaginella
moellendorffii]
gi|300163688|gb|EFJ30299.1| hypothetical protein SELMODRAFT_90144 [Selaginella
moellendorffii]
Length = 965
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E D + + AK+ R+ C C +KID +R+ +M +P G + WHH CI
Sbjct: 2 EPDHPWRAEYAKSSRAACGACHEKIDKDELRLGRMVESPKFDGWIPVWHHYSCI----AV 57
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
++ T + IE VD G+D+L DQ+++
Sbjct: 58 KKNTISSIEDVD---GFDNLRWGDQKKL 82
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
++ AK R+ C+ CK+K+ G RI+ + + S + H C +E F A
Sbjct: 110 IEIAKASRAICRVCKEKLVKGEARISTVENEKYRSPTFR---HAKCFVEFF-------AW 159
Query: 77 IEVVDDMGGWDDLTPEDQ 94
+ ++++ GWD L +Q
Sbjct: 160 DQPIEELDGWDTLDESEQ 177
>gi|400840|sp|P31669.1|PARP1_XENLA RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|1334661|emb|CAA78126.1| NAD(+) ADP-ribosyltransferase [Xenopus laevis]
Length = 998
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEV 79
AK+GR+ CKKC I ++ +A M +P GK+ WHH C F K+ A++
Sbjct: 1 AKSGRASCKKCGDNIAKESLGLAIMVQSPMFDGKVPHWHHYSC----FWKR----ARVLS 52
Query: 80 VDDMGGWDDLTPEDQEEV 97
D+ G+ +L EDQE +
Sbjct: 53 QGDIYGYTELRWEDQEMI 70
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYN---PFGSGKMKQWHHIDCILEVFKKQ 70
+F + AK+ RS CK C+QKI+ G +RI+K + P G + +W+H DC V ++
Sbjct: 98 DFAAEYAKSNRSACKGCEQKIEKGQIRISKKSVDVERP-QLGMIDRWYHPDCF--VSSRE 154
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ G+ L+ ED++ + + P E + D
Sbjct: 155 ELDFLPSYSASQLKGFTILSAEDKDSLKKKLPAVKNEGKRKAD 197
>gi|195998397|ref|XP_002109067.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
gi|190589843|gb|EDV29865.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
Length = 968
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
+D F + AK+ R+ CK C+ I T+R+A M + GK+ W+H C FKK
Sbjct: 5 NDLPFRAEYAKSNRAACKLCRSNIGKDTLRLAVMVQSMHFDGKVPNWYHFSCF---FKKN 61
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ D+GG+ L +DQE++
Sbjct: 62 SACSE-----GDIGGFGSLRWDDQEKL 83
>gi|57900566|dbj|BAD87018.1| putative phosphoesterase [Oryza sativa Japonica Group]
Length = 463
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK C + I G +R+ +P G K W+H+ C ++
Sbjct: 17 VEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK-WYHVACF-------PSSSHP 68
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ V+ + G+D + ED+EEV
Sbjct: 69 IDPVEKVKGFDSIKEEDREEV 89
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K P ++ + V+ AK+GRS CK C + I G +R+ +P G K W+HI C
Sbjct: 115 KASPGVAENVSISVEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK-WYHIACF 173
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+T V+++ G+D + +D++++
Sbjct: 174 -------PSSTYPAFPVENLKGFDSIENQDRDKL 200
>gi|345329505|ref|XP_001514646.2| PREDICTED: poly [ADP-ribose] polymerase 1-like [Ornithorhynchus
anatinus]
Length = 971
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C QKI+ G VR++K +P G + +W+H DC F +R
Sbjct: 71 DFAAEYAKSNRSTCKGCDQKIEKGQVRLSKKMVDPVKPQLGMIDRWYHPDC----FVSRR 126
Query: 72 QTTAKIEVVD--DMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + + G+ L PED+E + + P E + D
Sbjct: 127 VELGFLPQYNASQLKGFGILKPEDKETLKKQLPAVKSEGKRKGD 170
>gi|222619218|gb|EEE55350.1| hypothetical protein OsJ_03379 [Oryza sativa Japonica Group]
Length = 475
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK C + I G +R+ +P G K W+H+ C ++
Sbjct: 17 VEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK-WYHVACF-------PSSSHP 68
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ V+ + G+D + ED+EEV
Sbjct: 69 IDPVEKVKGFDSIKEEDREEV 89
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K P ++ + V+ AK+GRS CK C + I G +R+ +P G K W+HI C
Sbjct: 115 KASPGVAENVSISVEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK-WYHIACF 173
>gi|341902689|gb|EGT58624.1| hypothetical protein CAEBREN_29358 [Caenorhabditis brenneri]
Length = 727
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI-LEVFKKQRQT 73
+ ++ AK+ RS CKKC++ I G +R++ F G + W H C L++ K Q +
Sbjct: 10 YAIEYAKSARSTCKKCRKTISMGALRMSVNHQASFFDGNIDSWFHYPCFWLKLIKGQDEI 69
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSS 123
+ + G D L EDQE+ LRE K P +P +S
Sbjct: 70 N-----ISSIRGVDWLQWEDQED--------LREQIKKFKEPYVYVPRTS 106
>gi|344278585|ref|XP_003411074.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Loxodonta africana]
Length = 1108
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C ++ +++
Sbjct: 206 DFTAEYAKSNRSTCKGCMEKIEKGHMRLSKKMLDPEKPQMGVIDRWYHPNCFVQ--NREK 263
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ G+ LTPED+E + FP+ E + D
Sbjct: 264 LGFRPEYSASQIAGFSILTPEDREFLKKLFPKVKSEGKRRGD 305
>gi|323451583|gb|EGB07460.1| hypothetical protein AURANDRAFT_64882 [Aureococcus anophagefferens]
Length = 768
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 12 DKNFWVDRAKTGRSGCKK--CKQKIDTGTVRIAKMGYN-PFGSGKMKQWHHIDCILEVFK 68
+ F V A GRS C+ C++ + G RI K + +G +W+HIDC FK
Sbjct: 238 ENRFVVGAADDGRSKCQSILCREYLRPGEPRIGKRPPSVRWGHSPKTKWYHIDCCFASFK 297
Query: 69 KQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPE 116
+ + + I VDD+ G+ L + R + K RD+P+
Sbjct: 298 RTCKKSKTITSVDDIEGFASLDA----------ATATRGAGKGRDIPD 335
>gi|440795012|gb|ELR16153.1| Poly(ADPribose) polymerase and DNA-Ligase Zn-finger region domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 296
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+ RS CK C ++I G VRI + Y+ SG + W+H+DC F + TTA+
Sbjct: 41 VEYAKSARSQCKACSRQIPNGAVRIGQQ-YDRDHSGYL--WYHVDCFPN-FPRDGSTTAE 96
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRF 101
+ G++ L P+ Q V + F
Sbjct: 97 ----SFLFGFEKLAPKAQALVQNAF 117
>gi|322789314|gb|EFZ14626.1| hypothetical protein SINV_01622 [Solenopsis invicta]
Length = 383
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D ++ V+ AK+GRS C+ C I ++R + + W+H DC FK+Q
Sbjct: 23 DYDYLVEHAKSGRSKCRFCHLPIKNSSLRFTTIIPTRLFRERTSGWYHFDCF---FKEQN 79
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPE 103
++ VD++G + +L EDQ + + E
Sbjct: 80 PSS-----VDEIGNFHELCDEDQSAIQKKIEE 106
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
+F V+ AK+ RS C C + I G RI+K + + G +++WHH++C F K
Sbjct: 129 DFRVEYAKSSRSMCMGCLRYITKGQTRISKKDHKSRKAKRLGGLERWHHVEC----FAKF 184
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTP 130
R D++ G L+ EDQ+ + P VP PS ++ + +P
Sbjct: 185 RADIGYYGSGDELPGAAQLSKEDQQSLKVLLPR----------VPRDYAPSPPKRMNYSP 234
Query: 131 K 131
+
Sbjct: 235 E 235
>gi|324503896|gb|ADY41683.1| Poly(ADP-ribose) polymerase pme-1 [Ascaris suum]
Length = 884
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + AK+GR+ CK CK I G++R++ + F G W H DC KK
Sbjct: 15 YAAEYAKSGRASCKGCKDPIAMGSLRMSARQPSRFFDGLQDNWFHFDCFWNRIKKGDVNE 74
Query: 75 AKIEVVDDMGGWDD 88
A I + D+ WDD
Sbjct: 75 ASIRGI-DLLKWDD 87
>gi|401423283|ref|XP_003876128.1| putative DNA repair protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492369|emb|CBZ27643.1| putative DNA repair protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1092
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSGKMKQWHHIDCILEVFK 68
E N+ V ++ T R+ C+KC Q I G +R+ + +N +G + W H+ C
Sbjct: 25 EHVYNYIVQKSPTARARCRKCSQLIPKGEMRVGVPIRHNAGDNGWISAWQHLGCT----- 79
Query: 69 KQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF-----PESLR 106
+ + + E M G+ L PE+QE V+S PE L+
Sbjct: 80 -RMEKSESEEYKSTMYGFAALKPEEQEHVVSEINSTEMPEHLK 121
>gi|308468748|ref|XP_003096615.1| hypothetical protein CRE_01248 [Caenorhabditis remanei]
gi|308242487|gb|EFO86439.1| hypothetical protein CRE_01248 [Caenorhabditis remanei]
Length = 963
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ AK+ RS CKKCK+ I ++R++ + F G + W H +C + + R
Sbjct: 10 YAIEYAKSNRSNCKKCKKNIGANSLRMSLNQQSTFFDGTIDCWFHYECFWQNLSRSRNEI 69
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+ + G D L EDQE + +R
Sbjct: 70 N----ISSIRGVDWLRWEDQELLRNRI 92
>gi|198412483|ref|XP_002122941.1| PREDICTED: Zn-finger (NAD(+) ADP-ribosyltransferase)-3, partial
[Ciona intestinalis]
Length = 567
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E+D + + AK+ R+ CK C I+ ++RIA M + GK WHH C F +
Sbjct: 26 ENDLPYLAEYAKSSRASCKLCMSHIEKDSLRIALMVQSRHFDGKQPNWHHYTCF---FGR 82
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R + VD++ + +L +DQE++
Sbjct: 83 CRP-----KFVDEISKFHNLRWDDQEKI 105
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQ 70
++F V A + RS CKKC++KI+ +RI+ +P G + +WHH+ C F K
Sbjct: 127 QDFVVQYALSNRSTCKKCEEKIEKDEIRISHKEIDPEKPQVGLIDRWHHVGC----FIKS 182
Query: 71 RQTTAKIE---VVDDMGGWDDLTPEDQEEV 97
R+ I+ D + G+ L ED+ +
Sbjct: 183 RKDLGWIDGQFTSDMLKGFKGLDSEDRATI 212
>gi|405964909|gb|EKC30348.1| Poly [ADP-ribose] polymerase 1 [Crassostrea gigas]
Length = 326
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
+ AK+G++GCK C + ID G +RI +G FG+ W+H DC+
Sbjct: 8 AEYAKSGKAGCKGCGKSIDKGELRIGYVGKANFGA---TAWYHYDCL 51
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 2 SDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHID 61
+ K EP P+ D + A + +S CK C + I T+R+ G FG+ W+H D
Sbjct: 100 ASKAEPKPKSD--LAAEYAPSAKSNCKGCSKPIGKSTLRVGFPGKANFGA---TAWYHYD 154
Query: 62 CILE--VFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLS 99
C+ + V T+ +E D G++ L EDQ ++ S
Sbjct: 155 CVWKESVLLAPIDTSQSLEETVD--GFEKLKNEDQTKLSS 192
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
++KE P P D AK+ +S CK C KI +R+ G FG+ W+H+
Sbjct: 201 AAEKEPPLPP---KMAADYAKSDKSECKSCATKIAKNALRVGFTGKANFGA---VAWYHV 254
Query: 61 DCI----LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
DC+ E K + E+VD G+D L +DQ++V
Sbjct: 255 DCLKKCPQEYSKGIKADKPLEELVD---GFDKLNKDDQKKV 292
>gi|93003306|tpd|FAA00236.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 565
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E+D + + AK+ R+ CK C I+ ++RIA M + GK WHH C F +
Sbjct: 24 ENDLPYLAEYAKSSRASCKLCMSHIEKDSLRIALMVQSRHFDGKQPNWHHYTCF---FGR 80
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R + VD++ + +L +DQE++
Sbjct: 81 CRP-----KFVDEISKFHNLRWDDQEKI 103
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQ 70
++F V A + RS CKKC++KI+ +RI+ +P G + +WHH+ C F K
Sbjct: 125 QDFVVQYALSNRSTCKKCEEKIEKDEIRISHKEIDPEKPQVGLIDRWHHVGC----FIKS 180
Query: 71 RQTTAKIE---VVDDMGGWDDLTPEDQEEV 97
R+ I+ D + G+ L ED+ +
Sbjct: 181 RKDLGWIDGQFTSDMLKGFKGLDSEDRATI 210
>gi|432113949|gb|ELK36014.1| Poly [ADP-ribose] polymerase 1 [Myotis davidii]
Length = 1471
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILE-----V 66
+F + AK+ RS CK C ++ID G VR++K +P G + +W+H +C +E
Sbjct: 70 DFAAEYAKSNRSTCKGCLERIDKGQVRLSKKMLDPEKPQLGMIDRWYHPECFVEHREELG 129
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
F+ + + + G+ L PED+E + + P
Sbjct: 130 FRPEYSASL-------LKGFSLLAPEDKEALEKQLP 158
>gi|349806247|gb|AEQ18596.1| putative dna ligase 3 [Hymenochirus curtipes]
Length = 107
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK +GCKK +G MK+W+H+ C+ E ++ R
Sbjct: 11 EQRYCVEYAKRDTAGCKK-------------------ESAGDMKEWYHVKCMFEKLERAR 51
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPE 103
TT KIE + ++ GW +L D+E + E
Sbjct: 52 ATTKKIEDLTELEGWQELQDCDKELINQHVTE 83
>gi|154338690|ref|XP_001565567.1| putative DNA repair protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062619|emb|CAM39061.1| putative DNA repair protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1099
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSGKMKQWHHIDCILEVFKKQRQ 72
N+ + +A T R+ C+KC Q I G +R+ + +N +G + W H+ C + ++
Sbjct: 30 NYILQKAPTARARCRKCSQLISKGEMRVGVPIRHNAGDNGWISAWQHLGCT----RMEKS 85
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVLS 99
+ E M G+ +L PE+QE V++
Sbjct: 86 ESENYE--STMHGFTELKPEEQEHVVN 110
>gi|268565915|ref|XP_002639584.1| C. briggsae CBR-PME-1 protein [Caenorhabditis briggsae]
Length = 936
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ V+ AK+ RS CKKCK+ I+ +R++ + F G M W H +C + R
Sbjct: 10 YSVEYAKSARSTCKKCKKYINIEQLRMSLHQPSIFFDGTMDSWFHFECFWQNLAHGRHEI 69
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSR 100
+ + G D L EDQE + R
Sbjct: 70 N----ISSIKGVDWLRWEDQERLRDR 91
>gi|73960817|ref|XP_547506.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Canis lupus
familiaris]
Length = 972
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 70 DFAAEYAKSNRSTCKGCLEKIEKGQIRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 126
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E G+ LTPED+E + + P
Sbjct: 127 ELGFRPEYSASQFKGFGLLTPEDKEALKKQLP 158
>gi|443691797|gb|ELT93548.1| hypothetical protein CAPTEDRAFT_223861 [Capitella teleta]
Length = 994
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVFKKQ 70
++ V+ AK+ +SGC+ C KI VR++K Y+ + G + WHH+ C ++
Sbjct: 98 DYSVEYAKSSQSGCRGCGNKIGKNEVRVSKKDYDSMKAKMYGPVALWHHVQCFVD----- 152
Query: 71 RQTTAKIEVVDDMG-----GWDDLTPEDQEEVLSRF 101
+E DM G+ L EDQE ++ +
Sbjct: 153 --ARDDLEFTSDMDPTSIVGFKKLKKEDQEMLIGKL 186
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D +F + AK+GR+ CK CK I ++R+A M P W H +C + K
Sbjct: 3 DCDFKAEYAKSGRASCKACKSSIAKSSLRLAIMVQVP-------NWFHSNCFWKRAKVLS 55
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
QT D+ G+D L EDQE +
Sbjct: 56 QT--------DIDGFDSLRWEDQEAI 73
>gi|242054347|ref|XP_002456319.1| hypothetical protein SORBIDRAFT_03g033940 [Sorghum bicolor]
gi|241928294|gb|EES01439.1| hypothetical protein SORBIDRAFT_03g033940 [Sorghum bicolor]
Length = 514
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK C I +G +R+ +P G K W+H+ C+ + +
Sbjct: 47 VEYAKSGRSTCKGCSGAIASGALRLGASARDPRGFDATK-WYHVSCLPSL-------SHP 98
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
+ ++ + G+D + D+EE+
Sbjct: 99 LGPIESIKGFDSIKDHDREEL 119
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
MS E P D V+ AK+GRS CK C + I G +R+ +P G K W+H+
Sbjct: 148 MSSPAEGVP-DKVTISVEYAKSGRSTCKGCNENIAKGALRLGASFPDPRGYENNK-WYHV 205
Query: 61 DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
C ++ + ++++ G+D + D++++
Sbjct: 206 ACF-------PTSSYPLFPMENLKGFDSIKDHDRDKL 235
>gi|224028671|gb|ACN33411.1| unknown [Zea mays]
gi|414880610|tpg|DAA57741.1| TPA: phosphoesterase [Zea mays]
Length = 512
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK C I +G +R+ +P G G K W+H+ C+ ++
Sbjct: 44 VEYAKSGRSICKGCSGVIASGALRLGASARDPRGFGATK-WYHVSCL-------PSSSYP 95
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKKAVA 136
+ + + G+D + D+ E LRE K+ +R + S + + PKK +
Sbjct: 96 LGPIGSIKGFDSIKDHDRAE--------LRELEKNH---KRDNTAVSPPEEQRPKKARIQ 144
Query: 137 YF 138
F
Sbjct: 145 MF 146
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
D+ V+ AK+GRS CK C + I G +R+ +P G K W+H+ C
Sbjct: 154 DNVTVSVEYAKSGRSTCKGCSENIAKGALRLGASFPDPRGYENTK-WYHVVCF------- 205
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDV 114
++ + + ++ G+D + D+++ L + E+ + K DV
Sbjct: 206 PTSSYPLFPMSNLKGFDSIEDHDRDK-LHKLVENHKSDGKAADV 248
>gi|195653273|gb|ACG46104.1| phosphoesterase [Zea mays]
Length = 512
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK C I +G +R+ +P G G K W+H+ C+ ++
Sbjct: 44 VEYAKSGRSICKGCSGVIASGALRLGASARDPRGFGATK-WYHVSCL-------PSSSYP 95
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKKAVA 136
+ + + G+D + D+ E LRE K+ +R + S + + PKK +
Sbjct: 96 LGPIGSIKGFDSIKDHDRAE--------LRELEKNH---KRDNTAVSPPEEQRPKKARIQ 144
Query: 137 YF 138
F
Sbjct: 145 MF 146
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
D+ V+ AK+GRS CK C + I G +R+ +P G K W+H+ C
Sbjct: 154 DNVTVSVEYAKSGRSTCKGCSENIAKGALRLGASFPDPRGYENTK-WYHVVCF------- 205
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDV 114
++ + + ++ G+D + D+++ L + ++ + K DV
Sbjct: 206 PTSSYPLFPMSNLKGFDSIEDHDRDK-LHKLVDNHKSDGKAADV 248
>gi|304421460|gb|ADM32529.1| parp [Bombyx mori]
Length = 965
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 9 PEDD----KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHID 61
PE D K+F V+ +K+ R+ C +C+ KI +RI K+ Y+ G +WHH+
Sbjct: 78 PESDNSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLP 137
Query: 62 CILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQ 94
C F K R +++ G+DDL DQ
Sbjct: 138 C----FVKCRNELLYFAGGENLPGFDDLKKADQ 166
>gi|308483832|ref|XP_003104117.1| hypothetical protein CRE_01104 [Caenorhabditis remanei]
gi|308258425|gb|EFP02378.1| hypothetical protein CRE_01104 [Caenorhabditis remanei]
Length = 965
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ AK RS CKKCK+ I ++R++ + + G + W H +C + + R+
Sbjct: 10 YAIEYAKLNRSYCKKCKKNIGENSLRMSLNQKSTYFDGTIDSWFHYECFWQNLARNRKDI 69
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRF 101
++ + G D L EDQE + +R
Sbjct: 70 N----INSIRGVDWLNWEDQELLRNRI 92
>gi|167524952|ref|XP_001746811.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774591|gb|EDQ88218.1| predicted protein [Monosiga brevicollis MX1]
Length = 891
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 5 EEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHID 61
+EP P V+ AK+GR+ C+ C++KI G +R A + GS G + +W+H D
Sbjct: 56 DEP-PPTCPTLAVEHAKSGRAACRACEEKIAKGDLRFAVLCEAEPGSRYRGPVPRWYHKD 114
Query: 62 CILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS 121
C ++ + ++ + L P++ +++ F E+ ++ + +P+ K
Sbjct: 115 CFIDGLENHPDVPLELIEAKWLTNITLLEPDEVKDIDDMFDEARKDKGLAK-LPQNKRAK 173
Query: 122 SSEKKSKTPKKKAV 135
+E +++ A+
Sbjct: 174 RAEDRAEVAATAAL 187
>gi|338722759|ref|XP_001491507.3| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Equus
caballus]
Length = 972
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 70 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 126
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L+PED+E + + P
Sbjct: 127 ELGFRPEYSASQLKGFSLLSPEDKEALKKQLP 158
>gi|324502106|gb|ADY40927.1| DNA ligase 3 [Ascaris suum]
Length = 913
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 47 NPFGS-----GKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVL 98
NPF + +MKQ+ H DC+ E + R TT IE D+ GW D+ +D+ ++L
Sbjct: 35 NPFTTDSNNPSEMKQYFHADCLFETLTRCRATTKVIESPADIEGWSDVQEDDRNKIL 91
>gi|397632382|gb|EJK70531.1| hypothetical protein THAOC_08098, partial [Thalassiosira oceanica]
Length = 1176
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK--MKQWHHIDCILEVFKKQRQ 72
+ V+ +K+GR+ CK C ++I G++R+ G+ P GK + H+ C
Sbjct: 123 YIVEYSKSGRATCKTCDERILKGSLRV---GHRPLFRGKPGFMVYRHLHCT--------T 171
Query: 73 TTAKIEVVDDMGGWDDLTPED 93
+A + +D+G +D LTPED
Sbjct: 172 FSAGVRCAEDVGNYDSLTPED 192
>gi|338722761|ref|XP_003364607.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Equus
caballus]
Length = 979
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 77 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 133
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L+PED+E + + P
Sbjct: 134 ELGFRPEYSASQLKGFSLLSPEDKEALKKQLP 165
>gi|242043768|ref|XP_002459755.1| hypothetical protein SORBIDRAFT_02g009900 [Sorghum bicolor]
gi|241923132|gb|EER96276.1| hypothetical protein SORBIDRAFT_02g009900 [Sorghum bicolor]
Length = 931
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRI-AKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTA 75
++ A + R+ C++C +KI G+VR+ AK+ K W+H +C EV +
Sbjct: 58 IEIAPSARTSCRRCSEKIAKGSVRLSAKLESQ---GSKGIPWYHANCFFEV--------S 106
Query: 76 KIEVVDDMGGWDDLTPEDQEEVL 98
V+ GWD L+ ED+ VL
Sbjct: 107 PSATVEKFSGWDTLSDEDKRTVL 129
>gi|389548705|gb|AFK83593.1| hypothetical protein [uncultured bacterium]
Length = 177
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDC 62
++ A +GRS C+ C Q I +R + NPFGSG+M W H C
Sbjct: 5 IEPAPSGRSKCRGCAQIIPKDALRFGERLPNPFGSGEMTLWFHPAC 50
>gi|301782649|ref|XP_002926747.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Ailuropoda
melanoleuca]
Length = 1018
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 113 DFAAEYAKSNRSTCKGCMEKIEKGQIRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 169
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ LT ED+E + + P E + D
Sbjct: 170 ELGFRPEYSASQLKGFGLLTAEDKETLKKQLPGVKSEGKRKGD 212
>gi|281354063|gb|EFB29647.1| hypothetical protein PANDA_016433 [Ailuropoda melanoleuca]
Length = 981
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 76 DFAAEYAKSNRSTCKGCMEKIEKGQIRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 132
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT ED+E + + P
Sbjct: 133 ELGFRPEYSASQLKGFGLLTAEDKETLKKQLP 164
>gi|307111622|gb|EFN59856.1| hypothetical protein CHLNCDRAFT_133639 [Chlorella variabilis]
Length = 183
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ +++AK+GR+ C+ CK+ ID G +R+ G +W H C V KQ +
Sbjct: 3 YKIEKAKSGRAKCQGCKETIDEGELRMGSE--YEVGDRTSIKWKHWGC---VTAKQLEN- 56
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRF 101
I D++ G+D+L DQE V + F
Sbjct: 57 --IGNADNLQGYDELEEADQEAVDNTF 81
>gi|148910013|gb|ABR18091.1| unknown [Picea sitchensis]
Length = 343
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+ R+ CKKC ID G VR+ + G M +W+H+ C F Q + +
Sbjct: 7 VEYAKSARATCKKCGNTIDKGCVRLG-IASKAAGGFDMTRWYHLHC----FPSQSEVVS- 60
Query: 77 IEVVDDMGGWDDLTPEDQE---EVLSRFPESLRES 108
+++ G+ L DQE +++ F ++L S
Sbjct: 61 ---AENINGFTLLKAFDQEALKALVAEFGKNLGSS 92
>gi|20530704|gb|AAM27195.1|AF499444_1 poly ADP-ribose metabolism enzyme-1 [Caenorhabditis elegans]
Length = 945
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
M EP P + ++ AK+GRS CK CK+ I +R++ + F G M W H
Sbjct: 1 MIHSNEPLP-----YAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHY 55
Query: 61 DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+C + R + + G D L EDQE++
Sbjct: 56 NCFWIKMIRGRDDIN----ISSIRGVDWLRWEDQEKL 88
>gi|17510487|ref|NP_491072.1| Protein PME-1 [Caenorhabditis elegans]
gi|57013011|sp|Q9N4H4.1|PME1_CAEEL RecName: Full=Poly(ADP-ribose) polymerase pme-1; AltName:
Full=Poly ADP-ribose metabolism enzyme 1
gi|351059483|emb|CCD73512.1| Protein PME-1 [Caenorhabditis elegans]
Length = 945
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
M EP P + ++ AK+GRS CK CK+ I +R++ + F G M W H
Sbjct: 1 MIHSNEPLP-----YAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHY 55
Query: 61 DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+C + R + + G D L EDQE++
Sbjct: 56 NCFWIKMIRGRDDIN----ISSIRGVDWLRWEDQEKL 88
>gi|157870556|ref|XP_001683828.1| putative DNA repair protein [Leishmania major strain Friedlin]
gi|68126895|emb|CAJ04924.1| putative DNA repair protein [Leishmania major strain Friedlin]
Length = 1092
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSGKMKQWHHIDCILEVFKKQRQ 72
N+ V ++ T R+ C+KC Q I G +R+ + +N +G + W H+ C + +R
Sbjct: 29 NYIVQKSPTARARCRKCSQLIPKGEMRVGVPIRHNAGDNGWISAWQHLGCT----RMERS 84
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVL-----SRFPESLRESNKD----RDVPERKIPSSS 123
+ + + M G+ L PE+Q V+ + PE L+ + + R E+ P S+
Sbjct: 85 ESEDYK--NTMHGFAALQPEEQAHVVNEVHSTEMPEHLKPLDPEDLVHRGKMEQMAPPST 142
Query: 124 EKKSKTPKKK 133
+ P +K
Sbjct: 143 LLRHLLPYQK 152
>gi|225461681|ref|XP_002285464.1| PREDICTED: uncharacterized protein LOC100243613 [Vitis vinifera]
gi|302142893|emb|CBI20188.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+ RS CK C + I VR+ + G M +WHH+ C F ++ +
Sbjct: 11 VEYAKSNRSSCKTCSKTISANAVRLGLVTRGARGF-DMTKWHHVHC----FSAGSESISS 65
Query: 77 IEVVDDMGGWDDLTPEDQE---EVLSRFPESLRE 107
E++ G+ L DQE +++ F +SL E
Sbjct: 66 AEMIQ---GFASLKSSDQEALKKLVDGFAKSLDE 96
>gi|281208598|gb|EFA82774.1| polyADP-ribosyltransferase [Polysphondylium pallidum PN500]
Length = 931
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQ 72
++F V+ +K+ R+ CK C++ I G VRI + G W+H+ C +
Sbjct: 5 ESFLVEYSKSDRATCKSCQRGIGKGDVRIGHKTKSNHHDGMDVAWNHVKCKVN------- 57
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVLSR-FPES 104
+++ ++ + GW+ L EDQ++++ + FP S
Sbjct: 58 ---RVKDLEALKGWEVLRWEDQKDIIDKYFPGS 87
>gi|358345329|ref|XP_003636733.1| Poly [Medicago truncatula]
gi|355502668|gb|AES83871.1| Poly [Medicago truncatula]
Length = 415
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 18 DRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKI 77
+ AK+ RS CKKC + I + T+R+ + + + +WHH+ C +
Sbjct: 11 EYAKSNRSTCKKCSEAIQSKTLRLGLITKDKSRGFDVTKWHHLTCF--------TVPSSH 62
Query: 78 EVVDDMGGWDDLTPEDQEEVLSRFPE 103
+D + G+ L DQE + F E
Sbjct: 63 SSIDKITGFSSLKSGDQEALTKLFTE 88
>gi|351703428|gb|EHB06347.1| Poly [ADP-ribose] polymerase 1 [Heterocephalus glaber]
Length = 1132
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + A++ RS CK C +KI+ G +R++K +P G + +W+H DC + K +
Sbjct: 236 DFAAEYARSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPDCFV---KNRE 292
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G++ L+ ED+E + + P E + D
Sbjct: 293 ELGFQPEYNASQLKGFNLLSAEDKEALKKQLPGVKSEGKRKGD 335
>gi|255567066|ref|XP_002524515.1| polynucleotide kinase- 3'-phosphatase, putative [Ricinus communis]
gi|223536189|gb|EEF37842.1| polynucleotide kinase- 3'-phosphatase, putative [Ricinus communis]
Length = 332
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEV 79
AK+ RS CKKC I +R+ + + G M +WHH+DC + I
Sbjct: 13 AKSNRSTCKKCSTVISAKALRLGLVTKDSRGF-DMTKWHHLDCF----------SITISS 61
Query: 80 VDDMGGWDDLTPEDQEEVLSRFPESLRE 107
D +GG+ L DQ+ + + RE
Sbjct: 62 TDAIGGFASLQSRDQDALKKLISKGGRE 89
>gi|440803813|gb|ELR24696.1| Poly(ADPribose) polymerase catalytic domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 1093
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F ++ AK+ R+ C CK I+ T+RI + + G+ WHH C + K + +
Sbjct: 121 FKIEYAKSSRAKCVHCKTNIEKDTIRIGILEPSSKFDGEYYTWHHASCFFDKRKDVKSSA 180
Query: 75 AKIEVVDDMGGWDDLTPEDQEEV 97
+ + G+D L P DQ ++
Sbjct: 181 S-------LKGFDLLRPADQPKI 196
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILE 65
+F ++ AK+ RS C CK ID ++RI + + G+ WHH C +
Sbjct: 2 SFSIEYAKSARSKCVHCKMAIDKDSIRIGILEPSSKFDGEYYTWHHTSCFFD 53
>gi|146088639|ref|XP_001466107.1| putative DNA repair protein [Leishmania infantum JPCM5]
gi|134070209|emb|CAM68545.1| putative DNA repair protein [Leishmania infantum JPCM5]
Length = 1092
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSGKMKQWHHIDCILEVFKKQRQ 72
N+ V ++ T R+ C+KC Q I G +R+ + +N +G + W H+ C + +R
Sbjct: 29 NYIVQKSPTARARCRKCSQLIPKGEMRVGVPIRHNAGDNGWISAWQHLGCT----RMERS 84
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVL-----SRFPESLRESNKD----RDVPERKIPSSS 123
+ + + M G+ L PE+Q V+ + PE L+ + + R E+ P S+
Sbjct: 85 ESEDYK--NTMHGFAALKPEEQAHVVNEVNSTEVPEHLKPLDPEDLVHRGKMEQMTPPST 142
Query: 124 EKKSKTPKKK 133
+ P +K
Sbjct: 143 LLRHLLPYQK 152
>gi|355709317|gb|AES03551.1| poly ADP-ribose polymerase 1 [Mustela putorius furo]
Length = 178
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H DC + + +
Sbjct: 75 DFAAEYAKSNRSTCKGCMEKIEKGQIRLSKKMLDPEKPQLGMIDRWYHPDCFV---RNRE 131
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 132 ELGFRAEYSASQLKGFSLLAAEDKETLKKQLPGVKSEGKRKGD 174
>gi|414588860|tpg|DAA39431.1| TPA: hypothetical protein ZEAMMB73_927988 [Zea mays]
Length = 969
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRI-AKM-GYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
++ A + R+ C++C +KI G+VR+ AK+ P G W+H +C EV
Sbjct: 95 IEIAPSARTSCRRCSEKITKGSVRLSAKLESEGPKGI----PWYHANCFFEV-------- 142
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVL 98
+ V+ GWD L+ ED+ +L
Sbjct: 143 SPSATVEKFSGWDTLSDEDKRTML 166
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GR+ CK C+ I +R+ KM G M W+H
Sbjct: 10 AEYAKSGRASCKSCRSPIAKDQLRLGKMVQASQFDGFMPMWNHAS--------------- 54
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
VDD+ G D L +DQE++
Sbjct: 55 ---VDDVEGIDALRWDDQEKI 72
>gi|2632129|emb|CAA10889.1| poly(ADP-ribose) polymerase [Zea mays]
Length = 969
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRI-AKM-GYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
++ A + R+ C++C +KI G+VR+ AK+ P G W+H +C EV
Sbjct: 95 IEIAPSARTSCRRCSEKITKGSVRLSAKLESEGPKGI----PWYHANCFFEV-------- 142
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVL 98
+ V+ GWD L+ ED+ +L
Sbjct: 143 SPSATVEKFSGWDTLSDEDKRTML 166
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GR+ CK C+ I +R+ KM G M W+H
Sbjct: 10 AEYAKSGRASCKSCRSPIAKDQLRLGKMVQASQFDGFMPMWNHAS--------------- 54
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
VDD+ G D L +DQE++
Sbjct: 55 ---VDDVEGIDALRWDDQEKI 72
>gi|398016438|ref|XP_003861407.1| DNA repair protein, putative [Leishmania donovani]
gi|322499633|emb|CBZ34707.1| DNA repair protein, putative [Leishmania donovani]
Length = 1092
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSGKMKQWHHIDCILEVFKKQRQ 72
N+ V ++ T R+ C+KC Q I G +R+ + +N +G + W H+ C + +R
Sbjct: 29 NYIVQKSPTARARCRKCSQLIPKGEMRVGVPIRHNAGDNGWISAWQHLGCT----RMERS 84
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVL-----SRFPESLRESNKD----RDVPERKIPSSS 123
+ + + M G+ L PE+Q V+ + PE L+ + + R E+ P S+
Sbjct: 85 ESEDYK--NTMHGFAALKPEEQAHVVNEVNSTEVPEHLKPLDPEDLVHRGKMEQMTPPST 142
Query: 124 EKKSKTPKKK 133
+ P +K
Sbjct: 143 LLRHLLPYQK 152
>gi|356543217|ref|XP_003540059.1| PREDICTED: uncharacterized protein LOC100796730 [Glycine max]
Length = 402
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKM--GYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
D AK+G+S C+ C QKI+ +R+A + G P+ + +WHH+ C F +
Sbjct: 54 ADYAKSGKSSCRACSQKIEAKALRLASVSKGNGPY---DIVKWHHLRC----FPLSSHSH 106
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
+ E + G+ L DQE + F E+
Sbjct: 107 SSPESIR---GFSSLKSSDQEALKKLFAEN 133
>gi|357498215|ref|XP_003619396.1| Poly [Medicago truncatula]
gi|355494411|gb|AES75614.1| Poly [Medicago truncatula]
Length = 271
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CKKC + I + T+R+ + + + +WHH+ C +
Sbjct: 10 AEYAKSNRSTCKKCSEAIQSKTLRLGLVTKDKSRGFDVTKWHHLTCF--------PVPSS 61
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPE 103
+D + G+ L DQE + F E
Sbjct: 62 YSSIDKIIGFSSLKSGDQEALTKLFTE 88
>gi|357136320|ref|XP_003569753.1| PREDICTED: uncharacterized protein LOC100844676 [Brachypodium
distachyon]
Length = 478
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK C I G +R+ +P G K W+H+ C F
Sbjct: 41 VEYAKSGRSSCKGCSASIAKGALRLGASARDPRGYDSTK-WYHVAC----FPASSHPLGP 95
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
+E V+ G++ + +D+E++
Sbjct: 96 VEKVE---GFESIKDDDREQL 113
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 6 EPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILE 65
E E++ + V+ AK+ RS CK C I G +R+ +P G K W+H+ C
Sbjct: 146 EAGVEENASVSVEYAKSARSTCKGCSVSIAKGVLRLGVSVRDPRGFDSTK-WYHVTC--- 201
Query: 66 VFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS 121
F IE V G+D + +D+ E LRE KD P+ ++PS
Sbjct: 202 -FPTSSHPLGPIEKVK---GFDSIKDDDR--------ELLRELEKDTVGPQ-EVPS 244
>gi|444708489|gb|ELW49552.1| Poly [ADP-ribose] polymerase 1 [Tupaia chinensis]
Length = 1081
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + K +
Sbjct: 137 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPSCFV---KNRA 193
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ LT ED+E + + P E + D
Sbjct: 194 ELGFRPEYSASQLKGFSLLTAEDKETLKKQLPGVKNEGKRKGD 236
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 31/111 (27%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKM-------------------------GY 46
DK + + AK+GR+ CKKC + I ++R+A M +
Sbjct: 6 DKLYRAEYAKSGRASCKKCSESIPKDSLRMAIMVQFMKPDDPELPSQYHLSVKPHRREKH 65
Query: 47 NPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+P GK+ W+H C +V R +++ G+ +L +DQ++V
Sbjct: 66 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVD------GFSELRWDDQQKV 110
>gi|156400174|ref|XP_001638875.1| predicted protein [Nematostella vectensis]
gi|156225999|gb|EDO46812.1| predicted protein [Nematostella vectensis]
Length = 968
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
+ + AK+ RS CK C ++I G +R+AK+ + G + +WHH+ C L+
Sbjct: 68 DLLAEYAKSSRSTCKHCDEQIVKGELRLAKV-MDGEKYGPVPKWHHVPCFLKAMPD--LD 124
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+ I G+ L +DQ+ ++ +F
Sbjct: 125 ISGILTAQHFTGFQKLGKDDQKLLIDKF 152
>gi|407043263|gb|EKE41848.1| poly(ADP-ribose) polymerase, putative [Entamoeba nuttalli P19]
Length = 891
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
+F +KT R CK C + I G +++ + + F G QW+H++CI + +
Sbjct: 6 SFQFQYSKTSRGKCKSCGEVISQGEIKVGRETKSRFHDGIEVQWNHLECI------ENKY 59
Query: 74 TAKIEVVDDMGGWDDLTPED 93
K + M GW+ L ED
Sbjct: 60 NFKSTPLSTMKGWEKLRWED 79
>gi|317455339|pdb|3ODC|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
gi|317455340|pdb|3ODC|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
gi|317455345|pdb|3ODE|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
gi|317455346|pdb|3ODE|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
Length = 111
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 9 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 65
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 66 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 97
>gi|440804677|gb|ELR25554.1| CUE domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 542
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 51 SGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
G M W+H C+ + K+ R+TT KI+ DD+ G+ L DQ+++
Sbjct: 15 GGTMTDWYHAPCVFQHLKRARKTTKKIDSEDDLEGYSHLHDNDQKKL 61
>gi|159163914|pdb|2CS2|A Chain A, Solution Structure Of The Second Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 134
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 17 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 73
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 74 ELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGD 116
>gi|357110986|ref|XP_003557296.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2
[Brachypodium distachyon]
Length = 964
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
++ A++ R+ C+ C +KI G VR++ G G W+H+ C LE+ TA
Sbjct: 95 IEVAQSARASCRHCSEKIAKGNVRVSA---KVEGQG----WYHVSCFLEM-----SPTAT 142
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
+E + GW+ L+ ED+ +
Sbjct: 143 VEKIP---GWEALSHEDKGAI 160
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
V+ AK+GRS CK CK I +R+ KM + G M W+H
Sbjct: 10 VEYAKSGRSSCKSCKSPIGKDALRLGKMVQSTQFDGFMPLWNHAS--------------- 54
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
VDD+ G D L +DQE++
Sbjct: 55 ---VDDVEGIDALRWDDQEKI 72
>gi|118369331|ref|XP_001017870.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila]
gi|89299637|gb|EAR97625.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila SB210]
Length = 244
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVR----IAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQ 72
+++AK+ RS CK+CKQKI VR I+K Y+ W+H+ C F K +
Sbjct: 6 IEKAKSARSSCKQCKQKIAKDEVRVGISISKGDYDE------TSWYHVSC----FSKTKF 55
Query: 73 TTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+K ++D+ G+ L+ +Q E F
Sbjct: 56 AGSKD--IEDLDGYSALSGTEQAEAKKNF 82
>gi|321159579|pdb|2L31|A Chain A, Human Parp-1 Zinc Finger 2
Length = 112
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 10 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 66
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 67 ELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGD 109
>gi|297661828|ref|XP_002809429.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Pongo abelii]
Length = 951
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 49 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPGCFV---KNRE 105
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 106 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 137
>gi|168022368|ref|XP_001763712.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685205|gb|EDQ71602.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS C+ C + I R+AK+ +G M W+H C+ Q +
Sbjct: 14 AEYAKSSRSSCRACNKPIVKDAFRLAKVQTAHQFNGVMPLWNHASCVF-------QNENE 66
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLR 106
I+ ++++ G +DL D + L ++ E LR
Sbjct: 67 IKSLEEIDGLEDLRAGDLQN-LRKYIEGLR 95
>gi|395728946|ref|XP_002809428.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Pongo abelii]
Length = 972
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 70 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPGCFV---KNRE 126
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 127 ELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGD 169
>gi|183233573|ref|XP_652584.2| poly(ADP-ribose) polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801504|gb|EAL47198.2| poly(ADP-ribose) polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 891
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
+F +KT R CK C I G +++ + + F G QW+H++CI + +
Sbjct: 6 SFQFQYSKTSRGKCKSCGDVISQGEIKVGRETKSRFHDGIEVQWNHLECI------ENKY 59
Query: 74 TAKIEVVDDMGGWDDLTPED 93
K + M GW+ L ED
Sbjct: 60 NFKSTPLSTMKGWEKLRWED 79
>gi|449705019|gb|EMD45155.1| poly(ADPribose) polymerase, putative [Entamoeba histolytica KU27]
Length = 891
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
+F +KT R CK C I G +++ + + F G QW+H++CI + +
Sbjct: 6 SFQFQYSKTSRGKCKSCGDVISQGEIKVGRETKSRFHDGIEVQWNHLECI------ENKY 59
Query: 74 TAKIEVVDDMGGWDDLTPED 93
K + M GW+ L ED
Sbjct: 60 NFKSTPLSTMKGWEKLRWED 79
>gi|407409684|gb|EKF32413.1| hypothetical protein MOQ_003736 [Trypanosoma cruzi marinkellei]
Length = 230
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 15 FWVDRAKTGRSGCKK--CKQKIDTGTVRIAKMGYNPFGSGKMKQ---------WHHIDCI 63
V+ AK+GR C C Q+I VRI P G + W H+ C
Sbjct: 4 LRVEYAKSGRGKCSSSGCSQEIAKNEVRIGTAFLFPTPGGVNDEAGNERLSYKWRHLCCF 63
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E+ + + + +I +D G+ DL P DQE V
Sbjct: 64 TEIQLENARASGEINSID---GYSDLAPADQELV 94
>gi|344255078|gb|EGW11182.1| Poly [ADP-ribose] polymerase 1 [Cricetulus griseus]
Length = 971
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 70 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPTCFV---KNRE 126
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 127 ELGFRPEYSASQLKGFSLLSAEDKEVLKKQLPGVKSEGKRKGD 169
>gi|71659481|ref|XP_821462.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886843|gb|EAN99611.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 230
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 17 VDRAKTGRSGCKK--CKQKIDTGTVRIAKMGYNPFGSGKMKQ---------WHHIDCILE 65
V+ AK+GR C C Q+I VRI P G+ + W H+ C +
Sbjct: 6 VEYAKSGRGKCSSSGCSQEIVKNEVRIGTAFLFPAPGGEQNEAGNERLCYKWRHLCCFTD 65
Query: 66 VFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ + + + +I +D+ G+ DL P DQE V
Sbjct: 66 IQLENARASGEI---NDIDGYSDLAPADQELV 94
>gi|301623749|ref|XP_002941174.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Xenopus (Silurana)
tropicalis]
Length = 988
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAK--MGYNPFGSGKMKQWHHIDCIL 64
+F V+ AK+ RS CK C++KI+ G +RI+K + G + +W+H DC +
Sbjct: 86 DFAVEYAKSNRSTCKGCEKKIEKGQIRISKKMVDVERPQLGMIDRWYHSDCFV 138
>gi|407404490|gb|EKF29921.1| DNA repair protein, putative [Trypanosoma cruzi marinkellei]
Length = 984
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 1 MSDKEEPNPEDDKN----FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-GKMK 55
++D+ + P K+ + V RA T R+ C+KC Q I G ++ + G G +
Sbjct: 12 ITDRGQWKPAKGKDRVLRYIVQRAPTMRARCRKCSQYIVKGELKWGIPIRHSHGEYGWIT 71
Query: 56 QWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVL 98
W HI C + + E +D + G++ L+ E+Q EVL
Sbjct: 72 AWQHIGCT--------RISQINEAIDTIFGFEKLSSEEQNEVL 106
>gi|407843727|gb|EKG01590.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 984
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-GKMKQWHHIDCILEVFKKQRQTTA 75
V RA T R+ C+KC Q I G ++ + G G + W HI C + +
Sbjct: 32 VQRAPTMRARCRKCSQYIVKGELKWGIPIRHTHGEYGWITAWQHIGCT--------RISQ 83
Query: 76 KIEVVDDMGGWDDLTPEDQEEVL-----SRFPESLRESNKDRDVPERKIP 120
E ++ + G+++L+ E+Q EVL S P L N D V +P
Sbjct: 84 IDETINMIFGFENLSSEEQNEVLKEVTSSSLPFHLLPLNPDDLVKRGSLP 133
>gi|301121538|ref|XP_002908496.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262103527|gb|EEY61579.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 226
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQ 56
V+ AK+GRS C+ C++ ID G VR+ KM GK+ +
Sbjct: 182 VELAKSGRSKCRTCEEAIDKGAVRVGKMAKTTVAGGKVME 221
>gi|307104580|gb|EFN52833.1| hypothetical protein CHLNCDRAFT_138278 [Chlorella variabilis]
Length = 108
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRI---AKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++V+ A++GRS C++C+ KI +R+ A++ N + W H DC+ + ++
Sbjct: 26 YYVEYARSGRSSCRECRDKIPNAGLRLGEQAQVERNAW------SWRHWDCVSDTLLRRV 79
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
TA + G L P+D+ V R+
Sbjct: 80 GGTATLR------GLLQLEPQDRAMVERRY 103
>gi|402219334|gb|EJT99408.1| zf-PARP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 253
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 24/124 (19%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCK----QKIDTGTVRIAKM----GYNPFGSG 52
MSD+E P + + ++ A + RS CK K I G +R+ + G F
Sbjct: 1 MSDEEGPGRK--TAYRIEYASSARSKCKGPKPCSGSPIAKGIMRVGTLVDIKGIQSF--- 55
Query: 53 KMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF------PESLR 106
QW H C+ + F + ++++ G++DL EDQE+V F PE +
Sbjct: 56 ---QWRHFGCVTDRF--MGNILKSVGEIEELDGYEDLKLEDQEKVKKAFETRTIEPEDIP 110
Query: 107 ESNK 110
ES K
Sbjct: 111 ESAK 114
>gi|218189015|gb|EEC71442.1| hypothetical protein OsI_03657 [Oryza sativa Indica Group]
Length = 454
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
V+ AK+GRS CK C + I G +R+ +P G K W+HI C
Sbjct: 121 VEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK-WYHIACF 166
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
V+ AK+GRS CK C + I G +R+ +P G K W+H+ C
Sbjct: 17 VEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK-WYHVACF 62
>gi|343427098|emb|CBQ70626.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 551
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 15 FWVDRAKTGRSGCKKCKQ----KIDTGTVRIAKM----GYNPFGSGKMKQWHHIDCILEV 66
+ ++ A + R+GCK K KI G +R+ + G F QW H C+
Sbjct: 3 YRLEYASSNRAGCKGQKPCAGTKILKGELRLGTLVEIQGSQSF------QWRHWGCVTPR 56
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+ Q I D+ G++DL P+DQ V+ F
Sbjct: 57 IIRNIQEKDGISDPADLDGFEDLIPDDQARVIRAF 91
>gi|167384862|ref|XP_001737120.1| poly [ADP-ribose] polymerase [Entamoeba dispar SAW760]
gi|165900219|gb|EDR26610.1| poly [ADP-ribose] polymerase, putative [Entamoeba dispar SAW760]
Length = 202
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
+F +KT R CK C I+ G +++ + + F G QW+H++CI + +
Sbjct: 6 SFQFQYSKTSRGKCKTCGDVIEQGEIKVGRETKSRFHDGIEVQWNHLECI------ENKY 59
Query: 74 TAKIEVVDDMGGWDDLTPED 93
K + M GW+ L +D
Sbjct: 60 NFKSTPLSTMKGWEKLRWDD 79
>gi|326427718|gb|EGD73288.1| hypothetical protein PTSG_05004 [Salpingoeca sp. ATCC 50818]
Length = 1057
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS---GKMKQWHHIDCILEVF 67
D+ + ++ AK+ R+ C+KC++KI+ G +R+ + P + GK+ W+H C +
Sbjct: 82 DNADLTMEYAKSSRAACRKCEEKINKGELRLGVLMDPPAEASFRGKVPWWYHRRCFIGAL 141
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+ + ++ +D +V S F
Sbjct: 142 SAHKDIALASLAPEQFKNHKRISADDLADVRSLF 175
>gi|407849109|gb|EKG03955.1| hypothetical protein TCSYLVIO_004984 [Trypanosoma cruzi]
Length = 230
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 17 VDRAKTGRSGCKK--CKQKIDTGTVRIAKMGYNPFGSGKMKQ---------WHHIDCILE 65
V+ AK+GR C C Q+I VRI P G + W H+ C
Sbjct: 6 VEYAKSGRGKCSSSGCSQEIVKNEVRIGTAFLFPTPGGVQDEAGNERLCYKWRHLCCFTH 65
Query: 66 VFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ + + + +I +D+ G+ DL P DQE V
Sbjct: 66 IQLENARASGEI---NDIDGYSDLAPADQELV 94
>gi|357130920|ref|XP_003567092.1| PREDICTED: uncharacterized protein LOC100841627 [Brachypodium
distachyon]
Length = 668
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GRS CK C I G +R+ + G K W+H+ C F
Sbjct: 16 AEYAKSGRSSCKGCSASIAKGALRLGASALDLRGYDSTK-WYHVVC----FPASSHPLGP 70
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
+E V G+D + +D+E++
Sbjct: 71 VEKVK---GFDSIKDDDREQL 88
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 5 EEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64
E E++ + V+ AK+ RS CK C I G +R+ + Y W+H+ C
Sbjct: 120 HETGVEENSSVSVEYAKSARSSCKGCSVSIAKGALRLG-VSYRDARGFDSTNWYHVTC-- 176
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
F IE ++ G++ + +D+EE+
Sbjct: 177 --FPTSSHPLCPIE---NVKGFNSIKDDDREEL 204
>gi|71754507|ref|XP_828168.1| DNA repair protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833554|gb|EAN79056.1| DNA repair protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 984
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-GKMKQWHHIDCILEV 66
N E + V A T R+ C+KC Q I G ++ + G+ G + WHH+ C
Sbjct: 22 NGEKVWRYMVQTAPTMRARCRKCSQPILKGDLKWGTPIRHSHGAYGWITAWHHVGCT--- 78
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE-- 124
+ + D + G D L PE + +V++ E D +PE +P + +
Sbjct: 79 -----RIAERKGFSDIVHGIDLLPPEKRAQVVA-------EVTSD-SMPEHLLPLNPDDL 125
Query: 125 -KKSKTPKKKAVAYFCLIRPL 144
KK P+ +A A L+RPL
Sbjct: 126 VKKPLLPETEAPAE--LLRPL 144
>gi|261333966|emb|CBH16960.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 984
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-GKMKQWHHIDCILEV 66
N E + V A T R+ C+KC Q I G ++ + G+ G + WHH+ C
Sbjct: 22 NGEKVWRYMVQTAPTMRARCRKCSQPILKGDLKWGTPIRHSHGAYGWITAWHHVGCT--- 78
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE-- 124
+ + D + G D L PE + +V++ E D +PE +P + +
Sbjct: 79 -----RIAERKGFSDIVHGIDLLPPEKRAQVVA-------EVTSD-SMPEHLLPLNPDDL 125
Query: 125 -KKSKTPKKKAVAYFCLIRPL 144
KK P+ +A A L+RPL
Sbjct: 126 VKKPLLPETEAPAE--LLRPL 144
>gi|402585661|gb|EJW79600.1| hypothetical protein WUBG_09490 [Wuchereria bancrofti]
Length = 173
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 17/79 (21%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ A TGRS C CK+ I+ T+R+ G W+H++C F K +Q+T
Sbjct: 106 AEYAITGRSKCVNCKENIEKNTLRL----------GMKSAWYHVNC----FVKIQQST-- 149
Query: 77 IEVVDDMGGWDDLTPEDQE 95
+ G+ DL+ DQ+
Sbjct: 150 -NCAEKCFGFQDLSESDQD 167
>gi|71659675|ref|XP_821558.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
gi|70886941|gb|EAN99707.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 983
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-GKMKQWHHIDCILEVFKKQRQT 73
+ V RA T R+ C+KC Q I G ++ + G G + W HI C +
Sbjct: 30 YIVQRAPTMRARCRKCSQYIVKGELKWGIPIRHTHGEYGWITAWQHIGCT--------RI 81
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
+ E ++ + G++ L+ E+Q EVL S
Sbjct: 82 SQIDEAINMIFGFEKLSSEEQNEVLKEVTSS 112
>gi|219121229|ref|XP_002185842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582691|gb|ACI65312.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 464
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
+ V+ AK+GRS CKKCK KI+ G +RI N G + W H C
Sbjct: 6 YTVEYAKSGRSTCKKCKVKIEKGQMRIGVHIDN--GQFEYVNWTHPACF 52
>gi|170593795|ref|XP_001901649.1| WGR domain containing protein [Brugia malayi]
gi|158590593|gb|EDP29208.1| WGR domain containing protein [Brugia malayi]
Length = 875
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 18 DRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKI 77
+ A TGRS C CK I+ T+R+ G W+H++C F K +Q T
Sbjct: 107 EYAITGRSKCVNCKGNIEKNTLRL----------GMKSAWYHVNC----FVKIQQNT--- 149
Query: 78 EVVDDMGGWDDLTPEDQEEVLSRF 101
+ G+ DL+ DQ+ + F
Sbjct: 150 NCAEKFFGFQDLSESDQDLLKKMF 173
>gi|328870016|gb|EGG18391.1| poly(ADP-ribosyl)transferase [Dictyostelium fasciculatum]
Length = 949
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
F ++ +K+ RS CK C + G +R+ + G + H+ C ++
Sbjct: 8 FSIEYSKSDRSTCKNCGSGLSKGELRVGHGKPGQYHDGLEYSYFHVKCKIK--------- 58
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSR-FP 102
++++ D+ GW+ L +DQ + ++ FP
Sbjct: 59 -SVKILSDLKGWETLRWDDQMTIRTKHFP 86
>gi|167390311|ref|XP_001739295.1| poly [ADP-ribose] polymerase [Entamoeba dispar SAW760]
gi|165897069|gb|EDR24337.1| poly [ADP-ribose] polymerase, putative [Entamoeba dispar SAW760]
Length = 1573
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQ 70
DD +F + K+ R C CK + G +++ + G +W+H++C+ FK
Sbjct: 2 DDLSFRFEYCKSNRGCCSSCKTMLAEGKLKVGMEVVSSRHDGFDIEWYHLECVPAQFKTI 61
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTP 130
+ ++ K GWD L +D + R +S + K +D E ++ + K ++
Sbjct: 62 KLSSTK--------GWDVLRWKD----IQRIRQSCIDDLKFKDGEEEQLKELNTKYWESK 109
Query: 131 KK 132
KK
Sbjct: 110 KK 111
>gi|330804248|ref|XP_003290109.1| hypothetical protein DICPUDRAFT_36817 [Dictyostelium purpureum]
gi|325079774|gb|EGC33358.1| hypothetical protein DICPUDRAFT_36817 [Dictyostelium purpureum]
Length = 941
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ V+ AK+ RS C C + I+ VRI + G WHH+ C
Sbjct: 9 YLVEYAKSDRSSCATCSRGINKEDVRIGYKTKSRHFDGMDISWHHLKC----------KC 58
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRF 101
A + D+ W+ L EDQ ++ +++
Sbjct: 59 AGVPKFTDLVHWEYLKWEDQLDIKTKY 85
>gi|145478655|ref|XP_001425350.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392420|emb|CAK57952.1| unnamed protein product [Paramecium tetraurelia]
Length = 143
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCILEVFKKQRQTTA 75
V A + R C+ C Q I +RI + P G G K W+H+ C+ + + Q
Sbjct: 7 VGYALSNRVKCQNCLQNIIKDDIRIGHVLTRPPGLGFDRKVWYHLPCLTSIKGDRNQD-- 64
Query: 76 KIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSE 124
++VV+ G L EDQ++V R + + S + +D E K S E
Sbjct: 65 -LDVVNIHG----LKEEDQKKVRQRVDQIKKSSYQKKDQKEVKYLSKQE 108
>gi|301113494|ref|XP_002998517.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262111818|gb|EEY69870.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 124
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
D + ++ + + CK C I+ G +R+ + Y WHH++C +K R
Sbjct: 28 DGTYIIEATRKAHACCKSCDVTIEAGRLRVGVV-YQHRNGFVCINWHHVEC----YKSVR 82
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q K + G+ DL P+ Q+ V
Sbjct: 83 QIPLKC-----LEGFSDLDPQQQKVV 103
>gi|330842749|ref|XP_003293334.1| hypothetical protein DICPUDRAFT_41865 [Dictyostelium purpureum]
gi|325076358|gb|EGC30151.1| hypothetical protein DICPUDRAFT_41865 [Dictyostelium purpureum]
Length = 774
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 3 DKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDC 62
+KE+ +D V+ +K+ RS CKKC+ I +RI + G +W+H+ C
Sbjct: 2 EKEKFVQHEDLRHQVEYSKSNRSSCKKCRSTIAMNAIRIGVETPSRVFDGYDVKWYHLSC 61
Query: 63 I 63
+
Sbjct: 62 V 62
>gi|323456590|gb|EGB12457.1| hypothetical protein AURANDRAFT_70654 [Aureococcus anophagefferens]
Length = 698
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 20 AKTGRSGCKK--CKQKIDTGTVRIAKMGYN-PFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
A GR+ C + C+ K+ GT R+ K+ + G +W+HIDC+ F + + +
Sbjct: 73 ATDGRAKCAEATCRAKLVPGTPRLGKVPPSLRHGHNLKTKWYHIDCMFVNFTRASRKSKT 132
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I + D+ D L+ D+ V
Sbjct: 133 ITDLADVEHLDSLSAPDRRRV 153
>gi|118398580|ref|XP_001031618.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila]
gi|89285949|gb|EAR83955.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila SB210]
Length = 232
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSGKMKQWHHIDCILEVFKKQRQT 73
F + AK+GRS CK C I+ ++RI K+ N S +W+H C++ ++ T
Sbjct: 13 FCAELAKSGRSQCKACYNPIENDSLRIGYKIYVNEEHSVISTKWYHPKCVV---LPEKFT 69
Query: 74 TAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKK 132
K+ D+ G DDL + +E+ ESL+ +D + +P + ++ K K
Sbjct: 70 NLKVW---DIEGIDDLESKYHKEI----KESLKIQQGKKDQRVQHLPKITIRECKPTSK 121
>gi|298710017|emb|CBJ31735.1| DNA repair protein [Ectocarpus siliculosus]
Length = 644
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFK 68
AKT R+ C++C +KI G ++I + +G QWHH+ C VFK
Sbjct: 8 AKTSRAMCRRCDEKIMKGALKIGVVTEGSWGPS--TQWHHLMCT--VFK 52
>gi|374709001|ref|ZP_09713435.1| hypothetical protein SinuC_02192 [Sporolactobacillus inulinus CASD]
Length = 551
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 3 DKEEPNP-EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHID 61
D+E P P +D+ + V + K K K++ G ++ A G + SG+ H+
Sbjct: 85 DREHPEPYKDNIDKKVMQDKRYIEANKTMKEQQQAGKLKDAYTGRD-LKSGEKANLDHVV 143
Query: 62 CILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPS 121
E++ QR+ A + V D ++L P ++ S+ +S+++ + R+ E+ + +
Sbjct: 144 SKKELYDNQRRKQANLSVADLANKQENLKPTNESLNKSKGAKSIKKYVETRETREKTLIT 203
Query: 122 SSEKKSK 128
+E+ SK
Sbjct: 204 QNERASK 210
>gi|118388428|ref|XP_001027311.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila]
gi|89309081|gb|EAS07069.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila SB210]
Length = 323
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK--MKQWHHIDCILEVFKKQ 70
K D A + R+GCK CK KI +RI G G+ W H++C + +K
Sbjct: 4 KELKFDYASSSRAGCKGCKMKIQKNELRI---GLETLFQGEHTTTSWRHLEC-FSLGRKY 59
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+ K ++ G+ DL ED+ V+ F
Sbjct: 60 KDIDPK-----EIEGYYDLKKEDKARVIDYF 85
>gi|255084015|ref|XP_002508582.1| hypothetical protein MICPUN_62121 [Micromonas sp. RCC299]
gi|226523859|gb|ACO69840.1| hypothetical protein MICPUN_62121 [Micromonas sp. RCC299]
Length = 721
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQ-WHHIDCILEVFKKQRQTTAK 76
AKTGRS C++C + I G +R+ G F +G++ W H+ C L ++ T A+
Sbjct: 9 AKTGRSTCRECGEGIAQGVMRV---GIEAFVAGRVCDCWSHVKCSLGAMFLEKCTAAR 63
>gi|159462836|ref|XP_001689648.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283636|gb|EDP09386.1| predicted protein [Chlamydomonas reinhardtii]
Length = 160
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-----KMKQWHHIDCILEVFK 68
N+ V+ AK+GR+ CK C + I +R++ G + HI+C+ +
Sbjct: 4 NYVVEYAKSGRAMCKGCNKPIADKALRLSVQSTKEPEEGAKDHRRFTNNRHIECLTKTVV 63
Query: 69 KQRQTTAKIEVVDDMGGWDDLTPEDQEEVL 98
+ D G DLTP D+E VL
Sbjct: 64 ANGLKVH--DSADQFPGMADLTPSDRERVL 91
>gi|323447918|gb|EGB03824.1| hypothetical protein AURANDRAFT_67716 [Aureococcus anophagefferens]
Length = 539
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 12 DKNFWVDRAKTGRSGCKK--CKQKIDTGTVRIAKMGYNPFGSGKMK----QWHHIDCILE 65
D ++ A RS C++ C+ I GT RI + KMK W+H++CI E
Sbjct: 17 DPSYEASIANNSRSKCRERSCRCAIARGTPRIGR---------KMKCSKTSWYHVECIFE 67
Query: 66 VFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSR------FPESLRESNKDRDVPERK 118
F + I ++D+ LT E + E R F ++ ES+ D V ++
Sbjct: 68 QFLRGSWQRKTITTLNDVKNIHVLTLEQKLESFQRQLTNFGFKKNYAESSTDVCVLHKR 126
>gi|323454591|gb|EGB10461.1| hypothetical protein AURANDRAFT_62586 [Aureococcus anophagefferens]
Length = 1445
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 19 RAKTGRSGCKKCKQKIDTGTVRIAKMGYN-PFGSGKMKQWHHIDCILEVFKKQRQTTAKI 77
R++ GC C+ + G R+ K+ + GS K W+H+DC E F+ + + +
Sbjct: 368 RSRCQFGGCASCELR--PGDARLGKIPPSLRHGSSKKTTWYHLDCAFEAFRLCARKSKVV 425
Query: 78 EVVDDMGGWDDLTPEDQ 94
++D+ D L ED+
Sbjct: 426 TSLEDIENLDALPAEDR 442
>gi|255075383|ref|XP_002501366.1| SNF2 super family [Micromonas sp. RCC299]
gi|226516630|gb|ACO62624.1| SNF2 super family [Micromonas sp. RCC299]
Length = 961
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 10 EDDKNF--WVDRAKTGRSGCKKCKQKIDTGTVRIA-KMGYNPFGSGKMKQWHHIDCILEV 66
E+++ F V+ AK+GR+ C+KC + I +VRI + + G + W H C+
Sbjct: 22 ENEQTFSHVVEIAKSGRARCRKCSELIAKDSVRIGVPIKWRGGLFGWISSWQHPACL--- 78
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKI----PSS 122
+ + E+ ++ G D LT E +EVL + D+ V ++ P+
Sbjct: 79 ---RVPGVTRDELRCELHGVDALTDEQADEVLDQL-------TSDKGVELEEVDPNDPAF 128
Query: 123 SEKKSKTPKKKAVAYFCLIRPL 144
++++ P+ A A L RPL
Sbjct: 129 TKREDPVPELPAPA--ALTRPL 148
>gi|412991144|emb|CCO15989.1| DNA repair protein RAD16 [Bathycoccus prasinos]
Length = 1295
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCI 63
A + R+ C KC KI+ GTVR+ M Y G+ + W+H DC+
Sbjct: 49 APSARAKCGKCSDKIEKGTVRVG-MPYQWRGAFFSYVTGWYHADCV 93
>gi|449496369|ref|XP_002194832.2| PREDICTED: poly [ADP-ribose] polymerase 1 [Taeniopygia guttata]
Length = 1129
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKID----------TGTVRIAKMGYNPFGS--GKMKQWHHI 60
K + + AK+GR+ CKKC + I G +RI+K +P G + W+H
Sbjct: 219 KLYRAEYAKSGRASCKKCGESIAKDSLRLALMVQGQIRISKKMVHPEKPQLGMIDNWYHP 278
Query: 61 DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
DC V ++ + G+ L ED+E + + P + E +
Sbjct: 279 DCF--VSRRAELGFLPAYGATQLLGFSILKAEDKETLKKQLPATKSEGKR 326
>gi|145353728|ref|XP_001421157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581393|gb|ABO99450.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1086
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAK-MGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIE 78
AK+GR C KC +KI VRI + + Y G + +W H +C ++ + T ++E
Sbjct: 38 AKSGRGKCGKCGEKIAKDAVRIGEPLKYRGGDYGWISKWMHPEC----YRAEGVTREELE 93
Query: 79 VVDDMGGWDDLTPEDQEEVLS 99
+ G D L D+E +L+
Sbjct: 94 T--RVHGLDALKDGDREVLLA 112
>gi|195996927|ref|XP_002108332.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
gi|190589108|gb|EDV29130.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
Length = 873
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEV 79
+K+ RS CK C +KI G++R+A S W+H C FKK T +E
Sbjct: 13 SKSNRSICKICHKKIGKGSLRLAL-------SDMTLVWNHCGCF---FKK--YTLPNVEE 60
Query: 80 VDDMGGWDDLTPEDQEEV 97
+D G+ L EDQE++
Sbjct: 61 ID---GFATLRLEDQEKI 75
>gi|294955606|ref|XP_002788589.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239904130|gb|EER20385.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1363
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS-GKMKQWHHIDC 62
F VD AK+G S C++C KI ++R +P G G + W H +C
Sbjct: 58 FEVDLAKSGLSTCRRCGHKIPKTSLRFGYPVEDPRGDLGAIIIWFHAEC 106
>gi|66828935|ref|XP_647821.1| hypothetical protein DDB_G0278741 [Dictyostelium discoideum AX4]
gi|60469991|gb|EAL67972.1| hypothetical protein DDB_G0278741 [Dictyostelium discoideum AX4]
Length = 938
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ AK+ RS C C++ I+ VRI + G WHH+ C
Sbjct: 9 YEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKC----------KC 58
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
++ D+ W+ L EDQ + + + S
Sbjct: 59 PQVPSFTDLIHWEYLRWEDQLSIKTTYFSS 88
>gi|31744938|emb|CAD59237.1| NAD(+) ADP-ribosyltransferase-1A [Dictyostelium discoideum]
Length = 938
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ AK+ RS C C++ I+ VRI + G WHH+ C
Sbjct: 9 YEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKC----------KC 58
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPES 104
++ D+ W+ L EDQ + + + S
Sbjct: 59 PQVPSFTDLIHWEYLRWEDQLSIKTTYFSS 88
>gi|428185252|gb|EKX54105.1| hypothetical protein GUITHDRAFT_100352 [Guillardia theta
CCMP2712]
Length = 190
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK-MKQWHHIDCIL 64
K +++ AK+GR+ C C++KI TG R+ G + F G+ + W H C L
Sbjct: 29 KGVFLEDAKSGRAKCPACQEKIPTGDKRV---GVDTFRGGRFVVSWLHPSCFL 78
>gi|224100525|ref|XP_002311910.1| predicted protein [Populus trichocarpa]
gi|222851730|gb|EEE89277.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ ++ + C +C QKI G VR+ + K H +C + ++ +
Sbjct: 71 YGIEVSQDSLATCWECSQKIMKGEVRV--FLRVEGQASKRLLLDHANCFMNLYPSIQ--- 125
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVL---SRFPESLRESNKDRDVPERKIPSSSEK 125
V+ + GW+ L DQE VL + P + KD +R++P S+ K
Sbjct: 126 -----VEKLAGWETLPASDQEAVLLLVKKVPPAALTDIKDMGKEDRELPQSASK 174
>gi|118364858|ref|XP_001015650.1| hypothetical protein TTHERM_00077090 [Tetrahymena thermophila]
gi|89297417|gb|EAR95405.1| hypothetical protein TTHERM_00077090 [Tetrahymena thermophila
SB210]
Length = 231
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGY-NPFGSGKMKQWHHIDCI 63
+ + AK+ +S CK C++ ID GT+RI Y + + K+W+H C+
Sbjct: 12 YCAELAKSNKSECKGCQKTIDQGTLRIGHTVYFDEEHTHINKKWYHPSCL 61
>gi|388851814|emb|CCF54620.1| uncharacterized protein [Ustilago hordei]
Length = 511
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 15 FWVDRAKTGRSGCKKCKQ----KIDTGTVRIAKM----GYNPFGSGKMKQWHHIDCILEV 66
F ++ + + R+GCK K KI G +R+ + G F QW H C
Sbjct: 3 FRIEYSPSARAGCKGPKPCAGTKIAKGELRLGSLVEIQGNQSF------QWRHWGCTTPK 56
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
+ Q I D+ G+D+L ED+ V F
Sbjct: 57 IIRNIQEKEGITDPADLDGYDELLDEDKARVARAF 91
>gi|392562401|gb|EIW55581.1| zf-PARP-domain-containing protein [Trametes versicolor FP-101664
SS1]
Length = 411
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDC----ILEVFKKQ 70
F + A +GRS CK C + I R + F K W H C ++E K
Sbjct: 146 FKFEYASSGRSKCKDCSENIGKDYFRFGQE--VDFRGNKSYGWRHWGCADAKLVERLKAS 203
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ AK+ GWDDL ++E+V
Sbjct: 204 YEEPAKVP------GWDDLKDGEKEKV 224
>gi|429213775|ref|ZP_19204939.1| hypothetical protein PM1_03711 [Pseudomonas sp. M1]
gi|428155370|gb|EKX01919.1| hypothetical protein PM1_03711 [Pseudomonas sp. M1]
Length = 872
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 29/127 (22%)
Query: 42 AKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIE---------VVDDMGGWDDLTPE 92
A G+N S + ID +LE+ K+ T +E V+D M G DLT E
Sbjct: 480 ATSGFNAIKSDPTRSSPKIDQLLELLKRSISTDPSLENPAWADLIDVIDHMKGSKDLTSE 539
Query: 93 DQEEVLSRFPESLRESNKDR----DVPERKIPSSS----------------EKKSKTPKK 132
+E L+ ++ N + ++ +IP SS EK S T +K
Sbjct: 540 QAQEELNTLFNQAKQQNPEHSRSLEIQIYQIPKSSGSAALKSHINFLYEIHEKSSTTKRK 599
Query: 133 KAVAYFC 139
K + C
Sbjct: 600 KINSLIC 606
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,527,867,047
Number of Sequences: 23463169
Number of extensions: 102136579
Number of successful extensions: 292647
Number of sequences better than 100.0: 452
Number of HSP's better than 100.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 291722
Number of HSP's gapped (non-prelim): 709
length of query: 149
length of database: 8,064,228,071
effective HSP length: 112
effective length of query: 37
effective length of database: 9,731,320,439
effective search space: 360058856243
effective search space used: 360058856243
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)