BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14580
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49916|DNLI3_HUMAN DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2
Length = 1009
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 20/127 (15%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
R TT KIE + ++ GW++L ++E++ + I S K + T
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQI------------------TQHIADLSSKAAGT 191
Query: 130 PKKKAVA 136
PKKKAV
Sbjct: 192 PKKKAVV 198
>sp|P97386|DNLI3_MOUSE DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=2
Length = 1015
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCIL 64
P ++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+
Sbjct: 86 PCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 145
Query: 65 EVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
E ++ R TT KIE + ++ GW++L ++E++
Sbjct: 146 EKLERARATTKKIEDLTELEGWEELEDNEKEQI 178
>sp|Q11208|PARP_SARPE Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1
Length = 996
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
E D F V+ +K+ R+ CK CK KI+ G +RIA M + F GK W H C F+K
Sbjct: 2 EIDLPFKVEYSKSSRASCKGCKNKIEAGILRIAAMVQSAFHDGKQPNWFHEQCF---FQK 58
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
QR T+A D+ ++++ EDQE +
Sbjct: 59 QRPTSA-----GDIENFENIRFEDQERI 81
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+GR+ C+ C+QKI +RI K ++ G WHH++C F +
Sbjct: 112 KDFGIEYAKSGRASCRGCEQKILKDQIRIRKTVFDTEVGMKYGGQPLWHHVEC----FAQ 167
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R ++ +++ G+ L +D+ +V P
Sbjct: 168 LRGELGWLDTGENLPGFQTLKSDDKADVKKALP 200
>sp|P26446|PARP1_CHICK Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1
SV=2
Length = 1011
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKPYRAEYAKSGRASCKKCGESIAKDSLRLALMVQSPMFDGKVPHWHHYSC----FWKR- 60
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
A+I D+ G+ +L EDQE++
Sbjct: 61 ---ARIVSHTDIDGFPELRWEDQEKI 83
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C+QKI+ G +RI+K +P G + W+H DC V ++
Sbjct: 112 DFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQLGMIDNWYHPDCF--VSRRAE 169
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
+ G+ L ED+E + + P + E +
Sbjct: 170 LGFLPAYGATQLLGFSILKAEDKETLKKQLPATKTEGKR 208
>sp|P09874|PARP1_HUMAN Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4
Length = 1014
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLP 200
>sp|P18493|PARP1_BOVIN Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2
Length = 1016
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ W+H+ C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCKESIPKDSIRMAFMVESPMFDGKIPHWYHLSCFWKVGFSIW 65
Query: 72 QTTAKIEVVDDMGGWDD 88
++E ++ WDD
Sbjct: 66 HPDVEVEGFSEL-RWDD 81
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F AK+ RS CK C +KID G VR++K P G + W+H C ++ K+
Sbjct: 115 DFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQLGMVDCWYHPKCFVQ---KRE 171
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ LT EDQE + + P
Sbjct: 172 ELGFRPEFSATHLMGFSVLTAEDQETLKKQLP 203
>sp|P27008|PARP1_RAT Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=1
SV=4
Length = 1014
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDTEVD------GFSELRWDDQQKV 85
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPTCFV---KNRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFP 102
+ + E + G+ L+ ED+E + + P
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLP 200
>sp|Q9R152|PARP1_CRIGR Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1
PE=2 SV=3
Length = 1013
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
Q +++ G+ +L +DQ++V
Sbjct: 66 QPDVEVD------GFSELRWDDQQKV 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQLGMIDRWYHPTCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEVLKKQLPGVKSEGKRKGD 211
>sp|P35875|PARP_DROME Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp
PE=2 SV=1
Length = 994
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP---FGSGKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C+QKI+ VR+ K Y+ G WHH++C F +
Sbjct: 109 KDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLEC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFP 102
R +DM G+ L +DQ +V + P
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIP 197
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + A+TGR+ CK CK I T+RIA M + F K+ W H C FK QR ++
Sbjct: 7 YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCF---FKNQRPSS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
V D+ +L DQ+E L+ E+++E
Sbjct: 64 -----VGDIQNIGNLRFADQKE-LTDLVENIQE 90
>sp|P11103|PARP1_MOUSE Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3
Length = 1013
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V + R
Sbjct: 6 ERLYRVQYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGQSIR 65
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
+++ G+ +L +DQ++V
Sbjct: 66 HPDVEVD------GFSELRWDDQQKV 85
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFAAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTP 130
+ + E + G+ L+ ED+E + + P E + D ++ + E K
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD----EVDGTDEVAKKKS 224
Query: 131 KKKAVAYFCLIRPLCFQN 148
+K+ Y L + L QN
Sbjct: 225 RKETDKYSKLEKALKAQN 242
>sp|Q7EYV7|PARP1_ORYSJ Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica
GN=PARP1 PE=2 SV=1
Length = 977
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 29/117 (24%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
++ AK+ R+ C++C +KI GTVR++ G G W+H C LE+ +
Sbjct: 106 IEVAKSARTSCRRCGEKIKKGTVRVSS---KLEGQG----WYHASCFLEM--------SP 150
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKK 133
V++ GW+ L+ ED+ VL D+ ++ PSS + SK K+K
Sbjct: 151 AATVENFSGWEILSHEDKRAVL--------------DLVKKDAPSSGQTSSKGSKRK 193
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GRS CK C+ I +R+ KM G M W+H CIL K+ Q
Sbjct: 10 AEYAKSGRSSCKSCRSPIGKDQLRLGKMVQATQFDGLMPMWNHASCILS---KKNQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G D L +DQE++
Sbjct: 63 IKSVDDVEGIDTLRWDDQEKI 83
>sp|Q9ZP54|PARP1_ARATH Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1
PE=1 SV=2
Length = 983
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+ RS CK CK I+ R+ K+ + G M W+H CIL + T +
Sbjct: 10 AEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL-------KKTKQ 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G + L EDQ+++
Sbjct: 63 IKSVDDVEGIESLRWEDQQKI 83
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ ++T R+GC+KC +KI G VRI P G M WHH C LE+ +
Sbjct: 114 YGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM--WHHAKCFLEMSSSTELES 171
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESL----------RESNKDRDVPERKIPSSSE 124
GW + DQE +L ++L R++N R +RK S
Sbjct: 172 LS--------GWRSIPDSDQEALLPLVKKALPAAKTETAEARQTN-SRAGTKRKNDSVDN 222
Query: 125 KKSKTPK 131
+KSK K
Sbjct: 223 EKSKLAK 229
>sp|Q9ZSV1|PARP1_MAIZE Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1
Length = 980
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+ AK+GR+ CK C+ I +R+ KM G M W+H CI F K+ Q
Sbjct: 10 AEYAKSGRASCKSCRSPIAKDQLRLGKMVQASQFDGFMPMWNHARCI---FSKKNQ---- 62
Query: 77 IEVVDDMGGWDDLTPEDQEEV 97
I+ VDD+ G D L +DQE++
Sbjct: 63 IKSVDDVEGIDALRWDDQEKI 83
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRI-AKM-GYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
++ A + R+ C++C +KI G+VR+ AK+ P G W+H +C EV
Sbjct: 106 IEIAPSARTSCRRCSEKITKGSVRLSAKLESEGPKGI----PWYHANCFFEV-------- 153
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVL 98
+ V+ GWD L+ ED+ +L
Sbjct: 154 SPSATVEKFSGWDTLSDEDKRTML 177
>sp|Q84JE8|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana GN=ZDP
PE=1 SV=1
Length = 694
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K+ N D + AK+ RS CKKC Q I +R+ + N F MKQWHH+ C
Sbjct: 317 KDVKNSPDSSKVISEYAKSSRSTCKKCSQTIAAKELRLGLVTRN-FRGFDMKQWHHLGCF 375
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+ I V+D+GG+ +L DQ+ +
Sbjct: 376 -------PVDSDPIVSVEDIGGFSELQSGDQDAL 402
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 33 KIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPE 92
KI ++R+ + G M +WHH DC F ++ A VDD+ G L E
Sbjct: 68 KIAVKSLRLGLISKGR-GGVDMTRWHHFDC----FPTDSESIAS---VDDIQGLSALEKE 119
Query: 93 DQEEV 97
DQ+ +
Sbjct: 120 DQDAL 124
>sp|P31669|PARP1_XENLA Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis
GN=parp1 PE=2 SV=1
Length = 998
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEV 79
AK+GR+ CKKC I ++ +A M +P GK+ WHH C F K+ A++
Sbjct: 1 AKSGRASCKKCGDNIAKESLGLAIMVQSPMFDGKVPHWHHYSC----FWKR----ARVLS 52
Query: 80 VDDMGGWDDLTPEDQEEV 97
D+ G+ +L EDQE +
Sbjct: 53 QGDIYGYTELRWEDQEMI 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYN---PFGSGKMKQWHHIDCILEVFKKQ 70
+F + AK+ RS CK C+QKI+ G +RI+K + P G + +W+H DC V ++
Sbjct: 98 DFAAEYAKSNRSACKGCEQKIEKGQIRISKKSVDVERP-QLGMIDRWYHPDCF--VSSRE 154
Query: 71 RQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ G+ L+ ED++ + + P E + D
Sbjct: 155 ELDFLPSYSASQLKGFTILSAEDKDSLKKKLPAVKNEGKRKAD 197
>sp|Q9N4H4|PME1_CAEEL Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditis elegans
GN=pme-1 PE=2 SV=1
Length = 945
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
M EP P + ++ AK+GRS CK CK+ I +R++ + F G M W H
Sbjct: 1 MIHSNEPLP-----YAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHY 55
Query: 61 DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+C + R + + G D L EDQE++
Sbjct: 56 NCFWIKMIRGRDDIN----ISSIRGVDWLRWEDQEKL 88
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 22/114 (19%)
Query: 17 VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAK 76
+++ + R C KC Q + G ++ G + +H C L+ F K T
Sbjct: 119 TEKSLSNRGKCGKCGQNFERGEIKAHNKG----------KANHFKCFLQEFDKISGT--- 165
Query: 77 IEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTP 130
V+D+ GW D + + + + E+L + + P++ S TP
Sbjct: 166 ---VEDIPGWADYEENFKIKAVGEYVEALAAKRRSTE------PATPASASPTP 210
>sp|Q9CDT7|DPO3_LACLA DNA polymerase III PolC-type OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=polC PE=3 SV=1
Length = 1638
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 84 GGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKKAVAYFCL 140
G W+ + E++E ++ E++RE DVPE I S S+ K PK A AY +
Sbjct: 1424 GMWNKIPAEERE----KYVEAMRE----HDVPEWYIESCSKIKYMFPKAHAAAYIMM 1472
>sp|Q9Y7K9|YGI7_SCHPO PARP-type zinc finger-containing protein C2A9.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC2A9.07c PE=1 SV=3
Length = 246
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 9 PEDDKNFWVDRAKTGRSGCKKC---KQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILE 65
E + V+ AKTGR+ CK + KI G +R + G + +W H C+ E
Sbjct: 2 AESGAGYRVELAKTGRAECKGTVCGRSKIGKGDLRFGT--FVDVGKFQSWKWRHWGCVTE 59
Query: 66 VFKKQRQTTAKIEVVDDMGGWDDLT-PEDQEEVLSRFPE 103
+ + ++ + + G+++L P QE++L F +
Sbjct: 60 RVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQ 98
>sp|P24723|KPCL_HUMAN Protein kinase C eta type OS=Homo sapiens GN=PRKCH PE=1 SV=4
Length = 683
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 17 VDRAKTGRSGCKK-----------CKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI--DCI 63
VD+ + G++ K+ C D G + +A P G + H +C
Sbjct: 49 VDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELAVFHETPLG------YDHFVANCT 102
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
L+ + R T A D GW DL PE + V+ S E+ RD
Sbjct: 103 LQFQELLRTTGAS----DTFEGWVDLEPEGKVFVVITLTGSFTEATLQRD 148
>sp|P14779|CPXB_BACME Bifunctional P-450/NADPH-P450 reductase OS=Bacillus megaterium
GN=cyp102A1 PE=1 SV=2
Length = 1049
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 7 PNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEV 66
P DK W D + R ++ + + I + + PFG+G+ CI +
Sbjct: 359 PQLHRDKTIWGDDVEEFRP------ERFENPSA-IPQHAFKPFGNGQRA------CIGQQ 405
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPE-DQEEVLSRFPESLRESNKDRDVPERKIPS-SSE 124
F T ++ D E D +E L+ PE K + +P IPS S+E
Sbjct: 406 FALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGGIPSPSTE 465
Query: 125 KKSKTPKKKA 134
+ +K +KKA
Sbjct: 466 QSAKKVRKKA 475
>sp|O94641|HS104_SCHPO Heat shock protein 104 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hsp104 PE=3 SV=1
Length = 905
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKT 129
+R + I++VD+ +T E Q EVL LR+ + ER+ +S+++ K
Sbjct: 388 RRLPDSAIDLVDEAAAAVRVTRESQPEVLDNLERKLRQLRVEIRALEREKDEASKERLKA 447
Query: 130 PKKKA 134
+K+A
Sbjct: 448 ARKEA 452
>sp|Q7UZY1|LIPA1_PROMP Lipoyl synthase 1 OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=lipA1 PE=3 SV=1
Length = 297
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 39 VRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVL 98
V I + + G Q++ C+ EV KK +TT ++ + D G W L E++L
Sbjct: 105 VVITSVNRDDLDDGGASQFYK--CVSEVRKKSPETTIELLIPDLCGNWSAL-----EKIL 157
Query: 99 SRFPESLRESNKDRDVPERKI-PSSSEKKSKTPKKKAVAYF 138
P L + + RK+ P + +++ K+ YF
Sbjct: 158 DSRPNVLNHNIETVSALYRKVRPQGNYQRTLELLKRTREYF 198
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 60 IDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERK 118
+ +LEVF+K T + +DD+ D T E+ E+ + L N + PE+K
Sbjct: 760 VASLLEVFRKNHPTVQLYQYMDDLFVGSDYTAEEHEKAIVELRALLMTWN--LETPEKK 816
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,026,332
Number of Sequences: 539616
Number of extensions: 2518499
Number of successful extensions: 7245
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 7172
Number of HSP's gapped (non-prelim): 137
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)