Query psy14580
Match_columns 149
No_of_seqs 111 out of 351
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:28:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uw0_A DNA ligase III; DNA rep 100.0 5.6E-38 1.9E-42 232.5 10.1 111 10-121 1-116 (117)
2 1v9x_A Poly (ADP-ribose) polym 100.0 5.3E-32 1.8E-36 199.9 9.7 90 9-105 5-94 (114)
3 2dmj_A Poly (ADP-ribose) polym 100.0 3.6E-32 1.2E-36 198.2 7.4 89 11-105 12-100 (106)
4 2cs2_A Poly [ADP-ribose] polym 100.0 1.3E-31 4.6E-36 202.6 8.8 97 8-106 11-109 (134)
5 3odc_A Poly [ADP-ribose] polym 100.0 1.3E-31 4.6E-36 197.0 6.3 95 9-105 4-100 (111)
6 3od8_A Poly [ADP-ribose] polym 100.0 6.8E-32 2.3E-36 199.9 4.2 89 9-104 23-112 (116)
7 4av1_A Poly [ADP-ribose] polym 100.0 1.7E-29 5.7E-34 205.0 3.4 91 9-105 24-114 (223)
8 4av1_A Poly [ADP-ribose] polym 99.9 1.3E-27 4.6E-32 193.8 0.0 93 9-103 128-222 (223)
9 2vpb_A Hpygo1, pygopus homolog 83.6 0.57 2E-05 30.3 2.1 32 25-63 9-40 (65)
10 3f6q_B LIM and senescent cell 83.4 1 3.6E-05 27.9 3.2 35 20-64 7-41 (72)
11 2cup_A Skeletal muscle LIM-pro 81.3 1.3 4.4E-05 29.6 3.2 35 20-64 1-35 (101)
12 1x4k_A Skeletal muscle LIM-pro 81.2 1.2 3.9E-05 28.0 2.8 30 25-64 6-35 (72)
13 1x4l_A Skeletal muscle LIM-pro 80.8 0.77 2.6E-05 29.0 1.9 34 21-64 2-37 (72)
14 2cup_A Skeletal muscle LIM-pro 80.4 0.77 2.6E-05 30.8 1.9 34 21-64 63-96 (101)
15 2cur_A Skeletal muscle LIM-pro 79.4 1.5 5.2E-05 27.3 2.9 31 22-64 3-33 (69)
16 1x63_A Skeletal muscle LIM-pro 78.9 1.3 4.3E-05 28.6 2.5 36 19-64 10-45 (82)
17 1x61_A Thyroid receptor intera 78.6 0.96 3.3E-05 28.4 1.8 32 23-64 4-35 (72)
18 2egq_A FHL1 protein; LIM domai 77.9 1.9 6.6E-05 27.3 3.1 34 21-64 12-48 (77)
19 2d8x_A Protein pinch; LIM doma 76.6 2 6.7E-05 26.8 2.8 31 22-64 3-33 (70)
20 2d8y_A Eplin protein; LIM doma 76.4 1.4 4.9E-05 29.1 2.2 34 20-64 11-44 (91)
21 2dar_A PDZ and LIM domain prot 76.2 4.6 0.00016 26.5 4.7 34 19-64 20-53 (90)
22 2dj7_A Actin-binding LIM prote 75.7 1.7 6E-05 28.3 2.5 31 23-64 14-44 (80)
23 1a7i_A QCRP2 (LIM1); LIM domai 74.2 2 6.9E-05 27.6 2.5 31 23-64 6-36 (81)
24 1wyh_A SLIM 2, skeletal muscle 73.8 1.1 3.6E-05 28.2 1.0 31 24-64 5-35 (72)
25 1g47_A Pinch protein; LIM doma 72.7 2.1 7.1E-05 27.1 2.2 32 23-64 10-41 (77)
26 2cu8_A Cysteine-rich protein 2 72.1 2.4 8.2E-05 26.9 2.4 30 24-64 9-38 (76)
27 2rgt_A Fusion of LIM/homeobox 71.9 2.5 8.6E-05 31.1 2.8 30 25-64 66-95 (169)
28 2xb1_A Pygopus homolog 2, B-ce 71.3 2.9 9.8E-05 29.3 2.8 31 26-63 5-35 (105)
29 1iml_A CRIP, cysteine rich int 70.7 2.1 7E-05 27.2 1.8 28 26-64 2-29 (76)
30 1x68_A FHL5 protein; four-and- 69.7 3.2 0.00011 26.4 2.6 30 25-64 6-37 (76)
31 2co8_A NEDD9 interacting prote 69.6 1.3 4.4E-05 29.0 0.7 32 22-64 13-44 (82)
32 2l4z_A DNA endonuclease RBBP8, 68.7 3.7 0.00013 29.1 3.0 30 24-64 61-90 (123)
33 1x62_A C-terminal LIM domain p 68.7 3 0.0001 26.7 2.3 31 22-64 13-43 (79)
34 2cuq_A Four and A half LIM dom 67.2 2.9 0.0001 26.6 2.0 18 20-37 11-28 (80)
35 2cor_A Pinch protein; LIM doma 64.4 1.5 5.1E-05 28.4 0.2 13 23-35 14-26 (79)
36 1x64_A Alpha-actinin-2 associa 63.7 3.8 0.00013 26.8 2.1 30 23-64 24-53 (89)
37 1x3h_A Leupaxin; paxillin fami 63.3 4.9 0.00017 25.5 2.5 32 21-64 12-43 (80)
38 2d8z_A Four and A half LIM dom 62.6 3.8 0.00013 25.4 1.9 30 23-64 4-33 (70)
39 2iyb_E Testin, TESS, TES; LIM 62.0 4.5 0.00015 25.0 2.1 30 25-64 3-34 (65)
40 2jtn_A LIM domain-binding prot 61.6 2.2 7.6E-05 31.8 0.7 30 25-64 120-149 (182)
41 2xjy_A Rhombotin-2; oncoprotei 60.3 4.8 0.00017 28.0 2.3 29 26-64 68-96 (131)
42 2ehe_A Four and A half LIM dom 60.0 2 7E-05 27.6 0.2 17 20-36 11-27 (82)
43 1v6g_A Actin binding LIM prote 58.9 6.1 0.00021 25.2 2.4 34 19-64 10-43 (81)
44 1m3v_A FLIN4, fusion of the LI 58.4 5.9 0.0002 27.6 2.4 16 23-38 4-19 (122)
45 1wig_A KIAA1808 protein; LIM d 57.9 2.8 9.6E-05 26.7 0.6 12 25-36 6-17 (73)
46 1nyp_A Pinch protein; LIM doma 57.5 2.3 8E-05 26.1 0.1 29 24-64 5-33 (66)
47 2dlo_A Thyroid receptor-intera 56.2 7.5 0.00026 24.8 2.5 30 23-64 14-43 (81)
48 2l3k_A Rhombotin-2, linker, LI 56.0 2.4 8.1E-05 29.7 -0.0 14 25-38 9-22 (123)
49 2g6q_A Inhibitor of growth pro 54.7 3.8 0.00013 26.0 0.8 8 56-63 35-42 (62)
50 3c6w_A P28ING5, inhibitor of g 53.1 4.2 0.00014 25.5 0.8 8 56-63 33-40 (59)
51 1j2o_A FLIN2, fusion of rhombo 52.9 8.1 0.00028 26.5 2.4 14 24-37 3-16 (114)
52 1rut_X Flinc4, fusion protein 52.6 6.7 0.00023 29.3 2.0 29 26-64 71-99 (188)
53 1we9_A PHD finger family prote 51.4 4.8 0.00017 25.1 0.9 31 25-63 7-37 (64)
54 2vnf_A ING 4, P29ING4, inhibit 49.8 5.1 0.00017 25.1 0.8 8 56-63 34-41 (60)
55 1wen_A Inhibitor of growth fam 49.6 4.4 0.00015 26.4 0.5 8 56-63 40-47 (71)
56 2kgg_A Histone demethylase jar 49.5 15 0.00053 22.0 3.0 10 54-63 25-34 (52)
57 2rsd_A E3 SUMO-protein ligase 47.6 6.1 0.00021 25.2 1.0 30 25-63 11-41 (68)
58 1wee_A PHD finger family prote 46.0 7 0.00024 25.1 1.0 31 24-63 16-46 (72)
59 3o7a_A PHD finger protein 13 v 45.0 7.1 0.00024 23.5 0.9 10 54-63 24-33 (52)
60 1b8t_A Protein (CRP1); LIM dom 43.9 9.4 0.00032 28.5 1.6 32 22-64 5-36 (192)
61 2jmi_A Protein YNG1, ING1 homo 43.0 6.1 0.00021 27.1 0.4 8 56-63 50-57 (90)
62 1wem_A Death associated transc 42.1 5.3 0.00018 25.9 -0.0 10 54-63 36-45 (76)
63 1weu_A Inhibitor of growth fam 39.5 6 0.00021 27.2 -0.1 8 56-63 60-67 (91)
64 1x4i_A Inhibitor of growth pro 39.4 5 0.00017 26.1 -0.5 9 55-63 29-37 (70)
65 2xqn_T Testin, TESS; metal-bin 39.2 14 0.00048 25.4 1.8 18 24-41 63-80 (126)
66 2k16_A Transcription initiatio 38.2 6.5 0.00022 25.3 -0.1 31 24-63 18-48 (75)
67 1x6a_A LIMK-2, LIM domain kina 37.9 8.9 0.0003 24.3 0.6 17 19-35 10-26 (81)
68 1wep_A PHF8; structural genomi 36.8 7.2 0.00025 25.5 -0.0 10 54-63 33-42 (79)
69 3o70_A PHD finger protein 13; 36.6 11 0.00038 24.2 0.9 10 54-63 39-48 (68)
70 1wew_A DNA-binding family prot 35.2 7.8 0.00027 25.4 -0.0 33 22-63 14-47 (78)
71 1f62_A Transcription factor WS 34.0 13 0.00046 21.9 0.9 11 54-64 21-31 (51)
72 3kqi_A GRC5, PHD finger protei 33.5 8.7 0.0003 24.9 -0.0 10 54-63 31-40 (75)
73 2lv9_A Histone-lysine N-methyl 31.8 16 0.00053 25.0 1.1 11 54-64 48-58 (98)
74 2yql_A PHD finger protein 21A; 28.1 18 0.00061 22.0 0.7 30 23-64 8-37 (56)
75 3vi8_A Peroxisome proliferator 25.9 38 0.0013 26.8 2.5 42 54-100 75-116 (273)
76 2djr_A Zinc finger BED domain- 24.9 31 0.0011 22.8 1.5 39 22-69 26-65 (76)
77 3v3e_B Nuclear receptor subfam 24.5 36 0.0012 26.6 2.1 19 81-99 73-91 (257)
78 1xwh_A Autoimmune regulator; P 23.8 23 0.0008 22.2 0.7 32 21-64 5-36 (66)
79 2puy_A PHD finger protein 21A; 23.8 23 0.00077 21.8 0.6 30 23-64 4-33 (60)
80 3lqh_A Histone-lysine N-methyl 23.3 35 0.0012 26.0 1.8 30 26-63 4-36 (183)
81 3gyt_A Nuclear hormone recepto 22.8 33 0.0011 26.9 1.6 20 81-100 62-81 (244)
82 2l5u_A Chromodomain-helicase-D 21.9 19 0.00067 22.3 0.0 31 23-65 10-40 (61)
83 2nxx_A Ultraspiracle (USP, NR2 21.5 55 0.0019 24.7 2.6 20 81-100 58-77 (235)
84 2yt5_A Metal-response element- 20.8 71 0.0024 19.5 2.6 35 22-65 4-40 (66)
85 2ri7_A Nucleosome-remodeling f 20.6 21 0.00073 26.1 0.0 19 87-105 67-85 (174)
86 3l0l_A Nuclear receptor ROR-ga 20.3 49 0.0017 25.5 2.1 20 81-100 77-96 (248)
87 1fcy_A RAR-gamma-1, retinoic a 20.3 50 0.0017 25.0 2.1 21 80-100 64-84 (236)
88 3dzy_D Peroxisome proliferator 20.3 55 0.0019 27.5 2.5 20 81-100 243-262 (419)
No 1
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=100.00 E-value=5.6e-38 Score=232.50 Aligned_cols=111 Identities=37% Similarity=0.719 Sum_probs=99.4
Q ss_pred CCCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCCC--CCccceEEecCchhhHHHhhhhcccccCccCCCCCcC
Q psy14580 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWD 87 (149)
Q Consensus 10 ~~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~--~g~~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G~~ 87 (149)
|++.+|.|||||||||+|++|+++|.||+||||++++++++ +|.++.|||+.||++.+.+.|.+++.+.++++|+||+
T Consensus 1 m~~~~y~vEYAkSgRA~Ck~C~~kI~KgeLRiG~~v~~~~~~~~g~~~~W~H~~Cf~~k~~~~r~~~~~~~~~~~i~G~~ 80 (117)
T 1uw0_A 1 MAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWE 80 (117)
T ss_dssp CCCCEEEEEECCSSCEECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHHHHHHHHSCSSSCCSCTTSSSBSTT
T ss_pred CCCCceEEEEeCCCCccchhhCcccCCCCeEEEEEeccccccCCCCCCeeECcccchhHHhhhhhhccCCCChHHCcChH
Confidence 67889999999999999999999999999999999999988 7899999999999998888888888888999999999
Q ss_pred CCCHHHHHHHHHHchhhh---ccCCCCCCCCCcCCCC
Q psy14580 88 DLTPEDQEEVLSRFPESL---RESNKDRDVPERKIPS 121 (149)
Q Consensus 88 ~L~~eDQ~~I~~~~~~~~---~~~~~kk~~~~~~~~~ 121 (149)
+|+++||+.|+++|+++. .++|+||.+++ .+++
T Consensus 81 ~L~~eDQ~~I~~~i~~~~~~~~~~~~~~~~~~-~~~~ 116 (117)
T 1uw0_A 81 ELEDNEKEQITQHIADLSSKAAGTPKKKAVVQ-AKLT 116 (117)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSSSCCCCSCCCC-CCCC
T ss_pred HCCHHHHHHHHHHHHHhhccCCCCCccccccc-cccC
Confidence 999999999999998886 44577766555 5554
No 2
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.97 E-value=5.3e-32 Score=199.91 Aligned_cols=90 Identities=31% Similarity=0.543 Sum_probs=81.7
Q ss_pred CCCCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchhhHHHhhhhcccccCccCCCCCcCC
Q psy14580 9 PEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDD 88 (149)
Q Consensus 9 ~~~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G~~~ 88 (149)
...+.+|.|||||||||+|++|+++|.||+||||+++++++++|.++.|||+.||++.+ + .|.++++|+||++
T Consensus 5 ~~~~~~y~vEYAKS~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~~~~---~----~i~~~~~I~G~~~ 77 (114)
T 1v9x_A 5 SSGHKPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCILKKT---K----QIKSVDDVEGIES 77 (114)
T ss_dssp CSCCCSEEEEECSCSCCBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHHTSS---S----CCSCGGGEETTTT
T ss_pred CCCCcceEEEEeCCCCCCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccchhh---c----cCCChHHCCChHH
Confidence 56678999999999999999999999999999999999999999999999999998632 1 2457899999999
Q ss_pred CCHHHHHHHHHHchhhh
Q psy14580 89 LTPEDQEEVLSRFPESL 105 (149)
Q Consensus 89 L~~eDQ~~I~~~~~~~~ 105 (149)
|+++||++|+++|+++.
T Consensus 78 L~~eDQ~~I~~~i~~~~ 94 (114)
T 1v9x_A 78 LRWEDQQKIRKYVESGA 94 (114)
T ss_dssp SCHHHHHHHHHHHSSCS
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999999884
No 3
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=99.97 E-value=3.6e-32 Score=198.19 Aligned_cols=89 Identities=30% Similarity=0.527 Sum_probs=78.4
Q ss_pred CCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchhhHHHhhhhcccccCccCCCCCcCCCC
Q psy14580 11 DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLT 90 (149)
Q Consensus 11 ~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G~~~L~ 90 (149)
.+.+|.|||||||||+|+.|+++|.||+||||+++++++++|.++.|||+.||+..+.. . ..+.++|+||++|+
T Consensus 12 ~~~~~~vEyAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~~~~~~---~---~~~~~~i~G~~~L~ 85 (106)
T 2dmj_A 12 SDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHS---I---RHPDVEVDGFSELR 85 (106)
T ss_dssp CCCSEECEECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHHHTTCC---C---SCTTTSEETTTTSC
T ss_pred CCCeEEEEEeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccchhhcc---C---CCChhhCCChHHCC
Confidence 45799999999999999999999999999999999999999999999999999864211 1 12567899999999
Q ss_pred HHHHHHHHHHchhhh
Q psy14580 91 PEDQEEVLSRFPESL 105 (149)
Q Consensus 91 ~eDQ~~I~~~~~~~~ 105 (149)
++||++|+++|+.+.
T Consensus 86 ~eDq~~i~~~~e~g~ 100 (106)
T 2dmj_A 86 WDDQQKVKKTAEAGG 100 (106)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998873
No 4
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=202.63 Aligned_cols=97 Identities=26% Similarity=0.442 Sum_probs=83.3
Q ss_pred CCCCCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCC--CCCccceEEecCchhhHHHhhhhcccccCccCCCCC
Q psy14580 8 NPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGG 85 (149)
Q Consensus 8 ~~~~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~--~~g~~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G 85 (149)
.+|++.+|.|||||||||+|+.|+++|.||+||||+++++|+ ++|.++.|||+.||+..+. +..+..+.++++|+|
T Consensus 11 ~~~~~~~y~vEYAKSgRA~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~~~~~--~~~~~~~~~~~~I~G 88 (134)
T 2cs2_A 11 AEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNRE--ELGFRPEYSASQLKG 88 (134)
T ss_dssp CSSCEEEEEEEECSSSCCBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHHHTTT--TTTCCTTCCGGGEET
T ss_pred cccccCceEEEEeCCCCccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcChhhhh--ccccCCCCChHhCCC
Confidence 567889999999999999999999999999999999998874 3688999999999987532 222233457899999
Q ss_pred cCCCCHHHHHHHHHHchhhhc
Q psy14580 86 WDDLTPEDQEEVLSRFPESLR 106 (149)
Q Consensus 86 ~~~L~~eDQ~~I~~~~~~~~~ 106 (149)
|+.|+++||+.|+++|+++..
T Consensus 89 f~~L~~eDQe~I~~~i~~~~~ 109 (134)
T 2cs2_A 89 FSLLATEDKEALKKQLPGVKS 109 (134)
T ss_dssp TTTSCHHHHHHHHTTCCSSCC
T ss_pred hHHCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988854
No 5
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=99.97 E-value=1.3e-31 Score=196.95 Aligned_cols=95 Identities=26% Similarity=0.456 Sum_probs=80.1
Q ss_pred CCCCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCCC--CCccceEEecCchhhHHHhhhhcccccCccCCCCCc
Q psy14580 9 PEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGW 86 (149)
Q Consensus 9 ~~~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~--~g~~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G~ 86 (149)
+.++..|.|||||||||+|++|+++|.||+||||.++++|++ +|.++.|||+.||++.+.+. ....+.++++|+||
T Consensus 4 ~~~~~~y~vEyAkS~Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~~~~~~l--~~~~~~~~~~I~Gf 81 (111)
T 3odc_A 4 EKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREEL--GFRPEYSASQLKGF 81 (111)
T ss_dssp --CCCCEEEEECSSSCCBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHHHTHHHH--TCCTTTGGGGEETG
T ss_pred cccCCcceEEEeecCCccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhccchhhhc--ccCCCCCHHhCCCh
Confidence 457799999999999999999999999999999999998874 58889999999999865432 22334578999999
Q ss_pred CCCCHHHHHHHHHHchhhh
Q psy14580 87 DDLTPEDQEEVLSRFPESL 105 (149)
Q Consensus 87 ~~L~~eDQ~~I~~~~~~~~ 105 (149)
++|+++||++|+++|+++.
T Consensus 82 ~~L~~eDQe~Ikk~i~~~~ 100 (111)
T 3odc_A 82 SLLATEDKEALKKQLPGVK 100 (111)
T ss_dssp GGSCHHHHHHHHHHSCC--
T ss_pred HHCCHHHHHHHHHHHHhhc
Confidence 9999999999999997763
No 6
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=99.97 E-value=6.8e-32 Score=199.95 Aligned_cols=89 Identities=31% Similarity=0.569 Sum_probs=76.9
Q ss_pred CCCCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchhhHHHhhhhcccccC-ccCCCCCcC
Q psy14580 9 PEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIE-VVDDMGGWD 87 (149)
Q Consensus 9 ~~~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~~~~~k~r~t~k~i~-~~edI~G~~ 87 (149)
+..+.+|.|||||||||+|+.|+++|.||+||||+++++++++|.++.|||+.||++.+. .+. +.++|+||+
T Consensus 23 ~~~~~~y~vEyAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~~~~~-------~~~~~~~~I~Gfd 95 (116)
T 3od8_A 23 ESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGH-------SIRHPDVEVDGFS 95 (116)
T ss_dssp --CCCSEEEEECSSSCCBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHHHTCC-------CCSCHHHHEETGG
T ss_pred hccCCCEEEEEeccCCccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccChhhhh-------ccCCChhhCcChH
Confidence 345689999999999999999999999999999999999999999999999999986321 111 357899999
Q ss_pred CCCHHHHHHHHHHchhh
Q psy14580 88 DLTPEDQEEVLSRFPES 104 (149)
Q Consensus 88 ~L~~eDQ~~I~~~~~~~ 104 (149)
+|+++||++|+++|+++
T Consensus 96 ~L~~eDQekIkk~ie~g 112 (116)
T 3od8_A 96 ELRWDDQQKVKKTAEAG 112 (116)
T ss_dssp GSCHHHHHHHHHHHHC-
T ss_pred HCCHHHHHHHHHHHHcC
Confidence 99999999999999876
No 7
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=99.95 E-value=1.7e-29 Score=204.97 Aligned_cols=91 Identities=30% Similarity=0.514 Sum_probs=77.9
Q ss_pred CCCCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchhhHHHhhhhcccccCccCCCCCcCC
Q psy14580 9 PEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDD 88 (149)
Q Consensus 9 ~~~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G~~~ 88 (149)
+..+.+|.|||||||||+|++|+++|.||+||||+++++++++|.++.|||+.||++.+. . ...++++|+||++
T Consensus 24 ~~~d~~y~vEyAkS~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~~~~~---~---~~~~~~~I~G~~~ 97 (223)
T 4av1_A 24 SHSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGH---S---IRHPDVEVDGFSE 97 (223)
T ss_dssp ---CCSEEEEECSSTTCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHTTSCC---C---CSCHHHHEETTTS
T ss_pred cCCCCcEEEEEecCCCccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhhhhhc---c---cCCCHHHCCChhH
Confidence 345789999999999999999999999999999999999999999999999999986321 1 1236789999999
Q ss_pred CCHHHHHHHHHHchhhh
Q psy14580 89 LTPEDQEEVLSRFPESL 105 (149)
Q Consensus 89 L~~eDQ~~I~~~~~~~~ 105 (149)
|+++||++|+++|+++.
T Consensus 98 L~~eDQekIk~~ie~g~ 114 (223)
T 4av1_A 98 LRWDDQQKVKKTAEAGG 114 (223)
T ss_dssp SCHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 99999999999998874
No 8
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=99.93 E-value=1.3e-27 Score=193.75 Aligned_cols=93 Identities=27% Similarity=0.477 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccCCCccccccccCcCCCCeEEEEEeecCCC--CCccceEEecCchhhHHHhhhhcccccCccCCCCCc
Q psy14580 9 PEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGW 86 (149)
Q Consensus 9 ~~~~~~~~VEyAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~--~g~~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G~ 86 (149)
.+....|.|||||||||+|++|+++|.||+||||.++++|++ +|.++.|||+.||++.+... ....+.++++|+||
T Consensus 128 ~~~~~~y~vEYAKS~Ra~Ck~C~~kI~KgeLRig~~v~~~~~~~~G~~~~W~H~~Cf~~~~~~l--~~~~~~~~~~l~Gf 205 (223)
T 4av1_A 128 EKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREEL--GFRPEYSASQLKGF 205 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceEEEEeccCCccccccCCccCCCCeEEeeeecCcccccCCCcceeEChhhhhchhhhc--ccCCCCChHHCCCh
Confidence 456789999999999999999999999999999999988863 57889999999998753221 11223478999999
Q ss_pred CCCCHHHHHHHHHHchh
Q psy14580 87 DDLTPEDQEEVLSRFPE 103 (149)
Q Consensus 87 ~~L~~eDQ~~I~~~~~~ 103 (149)
+.|+++||++|+++|..
T Consensus 206 ~~L~~eDQ~~ikk~i~~ 222 (223)
T 4av1_A 206 SLLATEDKEALKKQLPG 222 (223)
T ss_dssp -----------------
T ss_pred HHCCHHHHHHHHHhccC
Confidence 99999999999999854
No 9
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.62 E-value=0.57 Score=30.34 Aligned_cols=32 Identities=19% Similarity=0.500 Sum_probs=23.8
Q ss_pred ccccccccCcCCCCeEEEEEeecCCCCCccceEEecCch
Q psy14580 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63 (149)
Q Consensus 25 A~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf 63 (149)
..|..|++.+..+..-|+- ++.-..|||..|+
T Consensus 9 ~~C~~C~~p~~~~~~mI~C-------D~~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILC-------EASCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEB-------TTTTCCEEEHHHH
T ss_pred CcCccCCCccCCCCCeEec-------ccCccccCchhcc
Confidence 4688999988777666654 3345699999996
No 10
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=83.36 E-value=1 Score=27.89 Aligned_cols=35 Identities=14% Similarity=0.435 Sum_probs=23.5
Q ss_pred ccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 20 AKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
-......|.+|++.|..++.-|.. . ..-||..||.
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~-------~---~~~~H~~CF~ 41 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNS-------N---GELYHEQCFV 41 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEE-------T---TEEEETTTSS
T ss_pred cCcCCccchhcCccccCCceEEEe-------C---cCeeCcCCCc
Confidence 345567999999999987644322 1 1346899984
No 11
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=81.30 E-value=1.3 Score=29.63 Aligned_cols=35 Identities=23% Similarity=0.618 Sum_probs=23.0
Q ss_pred ccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 20 AKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
|.++...|.+|++.|.-+...|-. ...-||..||.
T Consensus 1 ~s~~~~~C~~C~~~I~~~~~~~~a----------~~~~~H~~CF~ 35 (101)
T 2cup_A 1 GSSGSSGCVECRKPIGADSKEVHY----------KNRFWHDTCFR 35 (101)
T ss_dssp CCSCCCBCSSSCCBCCSSSCEEEE----------TTEEEETTTCC
T ss_pred CCCCCCcCcccCCcccCCceEEEE----------CccChhhcCCc
Confidence 456678999999999753333321 12466999984
No 12
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.17 E-value=1.2 Score=27.97 Aligned_cols=30 Identities=33% Similarity=0.698 Sum_probs=20.8
Q ss_pred ccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 25 A~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
..|..|++.|.-++..|-.. ..-||..||.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~----------~~~~H~~CF~ 35 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYK----------GSSWHETCFI 35 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEET----------TEEEETTTTC
T ss_pred CCCccCCCcccCCceEEEEC----------cCeecccCCc
Confidence 58999999998765444321 2456899984
No 13
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.76 E-value=0.77 Score=28.96 Aligned_cols=34 Identities=35% Similarity=0.627 Sum_probs=21.4
Q ss_pred cCCCccccccccCcCC--CCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 21 KTGRSGCKKCKQKIDT--GTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 21 KS~RA~Ck~Ck~kI~K--GeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.+....|.+|++.|.. ++..|.. ...-||..||.
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~~~a----------~~~~wH~~CF~ 37 (72)
T 1x4l_A 2 SSGSSGCAGCTNPISGLGGTKYISF----------EERQWHNDCFN 37 (72)
T ss_dssp CSCSCSBTTTTBCCCCSSSCSCEEC----------SSCEECTTTCB
T ss_pred CCCCCCCcCCCccccCCCCcceEEE----------CCcccCcccCE
Confidence 3456789999999985 3222211 12355899984
No 14
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=80.43 E-value=0.77 Score=30.76 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=22.3
Q ss_pred cCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 21 KTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 21 KS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+.-..+|.+|++.|..|+..|-. ...-||..||.
T Consensus 63 ~~~~~~C~~C~~~I~~~~~~~~a----------~~~~~H~~CF~ 96 (101)
T 2cup_A 63 REDSPKCKGCFKAIVAGDQNVEY----------KGTVWHKDCFS 96 (101)
T ss_dssp TCCCCBCSSSCCBCCSSSCEEES----------SSCEEETTTCC
T ss_pred hhcCCccccCCCccccCCeEEEe----------CCcchHHhCCC
Confidence 33446899999999877644421 12456999983
No 15
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.43 E-value=1.5 Score=27.30 Aligned_cols=31 Identities=39% Similarity=0.679 Sum_probs=20.1
Q ss_pred CCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 22 TGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 22 S~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
++...|.+|++.|. ++. | .. ...-||..||.
T Consensus 3 ~~~~~C~~C~~~I~-~~~-~--~a--------~~~~~H~~CF~ 33 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGG-I--TY--------QDQPWHADCFV 33 (69)
T ss_dssp CCCCCCSSSCCCCC-TTC-E--EE--------TTEEECTTTTB
T ss_pred CCcCCCcccCCEeC-cce-E--EE--------CccccccCcCE
Confidence 45578999999997 332 2 11 12456999984
No 16
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.93 E-value=1.3 Score=28.59 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=22.7
Q ss_pred EccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 19 RAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 19 yAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
|.+..-..|.+|++.|.-++..|-. . ..-||..||.
T Consensus 10 y~~~~~~~C~~C~~~I~~~~~~~~a-------~---~~~~H~~CF~ 45 (82)
T 1x63_A 10 TTREDSPKCKGCFKAIVAGDQNVEY-------K---GTVWHKDCFT 45 (82)
T ss_dssp CSCCCSCBCSSSCCBCCSSSCEEEC-------S---SCEEETTTCC
T ss_pred HccccCCcCccCCcccccCceEEEE-------C---ccccccccCc
Confidence 3344446899999999876543321 1 1345899984
No 17
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.64 E-value=0.96 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.653 Sum_probs=20.8
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+...|.+|++.|.-++..|-. ...-||..||.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a----------~~~~~H~~CF~ 35 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVA----------LDRVFHVGCFV 35 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEEC----------SSSEECTTTCB
T ss_pred CCCCCccCCCccCCCceEEEE----------CCCeEcccCCc
Confidence 456899999999865433321 12345999983
No 18
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=77.88 E-value=1.9 Score=27.31 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=21.2
Q ss_pred cCCCccccccccCcCC---CCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 21 KTGRSGCKKCKQKIDT---GTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 21 KS~RA~Ck~Ck~kI~K---GeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+..-..|.+|++.|.- +...|-. ...-||..||.
T Consensus 12 ~~~~~~C~~C~~~I~~~g~~~~~~~a----------~~~~~H~~CF~ 48 (77)
T 2egq_A 12 NFVAKKCAGCKNPITGFGKGSSVVAY----------EGQSWHDYCFH 48 (77)
T ss_dssp SCCCCCCSSSCCCCCCCSSCCCEEEE----------TTEEEETTTCB
T ss_pred hhhCccCcccCCcccCCCCCceeEEE----------CcceeCcccCE
Confidence 3334689999999985 3333321 12455999984
No 19
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.64 E-value=2 Score=26.84 Aligned_cols=31 Identities=39% Similarity=0.767 Sum_probs=20.4
Q ss_pred CCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 22 TGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 22 S~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
++...|.+|++.|. |++ |- . ...-||..||.
T Consensus 3 ~~~~~C~~C~~~I~-~~~-~~--a--------~~~~~H~~CF~ 33 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRV-IK--A--------MNNSWHPECFR 33 (70)
T ss_dssp CCSSBCSSSCCBCC-SCC-EE--E--------TTEEECTTTSB
T ss_pred CCCCcCccCCCEec-ceE-EE--E--------CcccccccCCE
Confidence 45678999999997 432 11 1 12456999984
No 20
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.37 E-value=1.4 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.495 Sum_probs=22.7
Q ss_pred ccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 20 AKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
...+...|..|++.|..+++ | .. ...-||..||.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~-v--~a--------~~~~~H~~CF~ 44 (91)
T 2d8y_A 11 QAPARETCVECQKTVYPMER-L--LA--------NQQVFHISCFR 44 (91)
T ss_dssp CSSSSCBCTTTCCBCCTTSE-E--EC--------SSSEEETTTCB
T ss_pred CCCCCCcCccCCCccCCcee-E--EE--------CCCEECCCCCe
Confidence 33567799999999987663 2 11 12345899984
No 21
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.19 E-value=4.6 Score=26.51 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=22.1
Q ss_pred EccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 19 RAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 19 yAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
++......|.+|++.|. ++. |- . ...-||..||.
T Consensus 20 ~~~~~~~~C~~C~~~I~-~~~-v~--a--------~~~~~H~~CF~ 53 (90)
T 2dar_A 20 PAGKRTPMCAHCNQVIR-GPF-LV--A--------LGKSWHPEEFN 53 (90)
T ss_dssp CTTTCCCBBSSSCCBCC-SCE-EE--E--------TTEEECTTTCB
T ss_pred CCCCCCCCCccCCCEec-ceE-EE--E--------CCccccccCCc
Confidence 55566788999999995 432 11 1 12456999984
No 22
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.69 E-value=1.7 Score=28.29 Aligned_cols=31 Identities=32% Similarity=0.733 Sum_probs=21.1
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+...|.+|++.|..+++-.+ ...-||..||.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a-----------~~~~wH~~CF~ 44 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA-----------LDKQWHVSCFK 44 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE-----------TTEEECTTTCB
T ss_pred CCCCCcCcCCeeCCCeEEEE-----------CCcccccccCC
Confidence 45689999999987763111 12456999983
No 23
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=74.20 E-value=2 Score=27.61 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=20.5
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+...|..|++.|..+++ |-. ...-||..||.
T Consensus 6 ~~~~C~~C~~~I~~~~~-~~a----------~~~~~H~~CF~ 36 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEE-VQC----------DGRSFHRCCFL 36 (81)
T ss_dssp --CBCSSSCCBCSSTTE-EEE----------TTEEEESSSEE
T ss_pred CCCcCcCcCccccCcee-EEe----------CCcccccccCc
Confidence 45789999999987773 311 12456899984
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.76 E-value=1.1 Score=28.17 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=20.3
Q ss_pred CccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 24 RSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 24 RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
...|.+|++.|.-++..|-. . ..-||..||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a-------~---~~~~H~~CF~ 35 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY-------G---GQTWHEHCFL 35 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS-------T---TCCEETTTCB
T ss_pred CCCCccCCCccccCccEEEE-------C---ccccCcccCe
Confidence 36899999999875433311 1 1345899984
No 25
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.73 E-value=2.1 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.442 Sum_probs=20.1
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
....|.+|++.|.-++.-|-. ...-||..||.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a----------~~~~~H~~CF~ 41 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS----------NGELYHEQCFV 41 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE----------TTEEECTTTCC
T ss_pred CCCCchhcCCccCCCceEEEe----------CccEeccccCe
Confidence 357899999999754322211 12456999984
No 26
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.06 E-value=2.4 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=20.8
Q ss_pred CccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 24 RSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 24 RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
...|.+|++.|..+++ |- . ...-||..||.
T Consensus 9 ~~~C~~C~~~I~~~~~-v~--a--------~~~~~H~~CF~ 38 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEK-VS--S--------LGKDWHKFCLK 38 (76)
T ss_dssp CCBCTTTCCBCCTTTE-EE--E--------TTEEEETTTCB
T ss_pred CCCCcCCCCEeECCeE-EE--E--------CCeEeeCCCCC
Confidence 4689999999997774 21 1 12456999983
No 27
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=71.94 E-value=2.5 Score=31.11 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=20.5
Q ss_pred ccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 25 A~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.+|.+|++.|..+++.+.. ...+||..||.
T Consensus 66 ~~C~~C~~~I~~~~~v~~a----------~~~~~H~~CF~ 95 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRA----------QDFVYHLHCFA 95 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEE----------TTEEEEGGGCB
T ss_pred ccccccccccCCCcEEEEc----------CCceEeeCCCc
Confidence 4677899999876643321 13688999984
No 28
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=71.26 E-value=2.9 Score=29.28 Aligned_cols=31 Identities=19% Similarity=0.647 Sum_probs=19.3
Q ss_pred cccccccCcCCCCeEEEEEeecCCCCCccceEEecCch
Q psy14580 26 GCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63 (149)
Q Consensus 26 ~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf 63 (149)
.|..|++....+..-|+- ++....|||..|+
T Consensus 5 ~C~iC~~p~~~~~~mi~C-------dd~C~~WfH~~CV 35 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILC-------EASCQKWFHRECT 35 (105)
T ss_dssp BCTTTCSBCCTTSCEEEC-------TTTTCCEEEGGGT
T ss_pred CCCCCCCccCCCCCEEEe-------cCCcccccccccC
Confidence 578888877443222211 2244699999996
No 29
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=70.72 E-value=2.1 Score=27.24 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=19.2
Q ss_pred cccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 26 GCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 26 ~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.|.+|++.|..+++ |-. ...-||..||.
T Consensus 2 ~C~~C~~~I~~~~~-v~a----------~~~~~H~~CF~ 29 (76)
T 1iml_A 2 KCPKCDKEVYFAER-VTS----------LGKDWHRPCLK 29 (76)
T ss_dssp BCTTTSSBCCGGGE-EEE----------TTEEEETTTCB
T ss_pred cCCCCCCEEECceE-EEE----------CCccccCCCCC
Confidence 69999999987764 211 12466899984
No 30
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.73 E-value=3.2 Score=26.36 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=18.9
Q ss_pred ccccccccCcCC--CCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 25 SGCKKCKQKIDT--GTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 25 A~Ck~Ck~kI~K--GeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
..|.+|++.|.. +...|-. ...-||..||.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a----------~~~~wH~~CF~ 37 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF----------QDSQWHSECFN 37 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE----------TTEEEEGGGCB
T ss_pred CCCccCCCcccCCCCceeEEE----------CCcccCcccCC
Confidence 479999999985 3222321 12345999984
No 31
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.61 E-value=1.3 Score=28.98 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=21.0
Q ss_pred CCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 22 TGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 22 S~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.+...|.+|++.|..+++-.+ ...-||..||.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a-----------~~~~wH~~CF~ 44 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV-----------NGHFFHRSCFR 44 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB-----------TTBCCBTTTCB
T ss_pred CCCCCCcccCCCcccceEEEE-----------CCCeeCCCcCE
Confidence 355789999999976653111 12456999983
No 32
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=68.69 E-value=3.7 Score=29.06 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=19.6
Q ss_pred CccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 24 RSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 24 RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
...|.+|++.|.-+. +|-. ...-||..||.
T Consensus 61 ~~~C~~C~~~I~~~~-~v~a----------~~~~wH~~CF~ 90 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF-LLYA----------MDSYWHSRCLK 90 (123)
T ss_dssp CSBBSSSSSBCCSSS-EEEE----------TTEEEETTTSB
T ss_pred CCcCcCCCCCcCCcE-EEEe----------CCcEEcccccC
Confidence 358999999998543 2211 12456999984
No 33
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.67 E-value=3 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=19.8
Q ss_pred CCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 22 TGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 22 S~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.....|.+|++.|.- ++ | .. ...-||..||.
T Consensus 13 ~~~~~C~~C~~~I~~-~~-~--~a--------~~~~~H~~CF~ 43 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VF-V--KL--------RDRHRHPECYV 43 (79)
T ss_dssp CCCCCCSSSCCCCCS-SC-E--EC--------SSCEECTTTTS
T ss_pred CCCCccccCCCCccC-cE-E--EE--------CcceeCcCcCe
Confidence 345789999999973 31 1 11 12456999984
No 34
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.22 E-value=2.9 Score=26.63 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=12.9
Q ss_pred ccCCCccccccccCcCCC
Q psy14580 20 AKTGRSGCKKCKQKIDTG 37 (149)
Q Consensus 20 AKS~RA~Ck~Ck~kI~KG 37 (149)
.+..-..|.+|++.|...
T Consensus 11 ~~~~~~~C~~C~~~I~~~ 28 (80)
T 2cuq_A 11 ENKFAPRCARCSKTLTQG 28 (80)
T ss_dssp CCCSSCCCTTTCCCCCSC
T ss_pred ccccCCcCCCCCCEecCc
Confidence 333446899999999643
No 35
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.45 E-value=1.5 Score=28.43 Aligned_cols=13 Identities=46% Similarity=0.963 Sum_probs=11.1
Q ss_pred CCccccccccCcC
Q psy14580 23 GRSGCKKCKQKID 35 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~ 35 (149)
+...|.+|++.|.
T Consensus 14 ~~~~C~~C~~~I~ 26 (79)
T 2cor_A 14 GKYICQKCHAIID 26 (79)
T ss_dssp CCCBCTTTCCBCC
T ss_pred CCCCCccCCCEec
Confidence 4578999999998
No 36
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.66 E-value=3.8 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=19.3
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
....|.+|++.|.- ++ | .. ....||..||.
T Consensus 24 ~~~~C~~C~~~I~~-~~-~--~a--------~~~~~H~~CF~ 53 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV-V--KA--------RDKYRHPECFV 53 (89)
T ss_dssp SCCBCTTTCCBCCS-CC-E--ES--------SSCEECTTTCC
T ss_pred cCCCcccCCCEecc-cE-E--EE--------CCceECccCCE
Confidence 44689999999983 21 1 11 12466999984
No 37
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.25 E-value=4.9 Score=25.53 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=19.9
Q ss_pred cCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 21 KTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 21 KS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+..-..|.+|++.|....|+. ...-||..||.
T Consensus 12 ~~~~~~C~~C~~~I~~~~v~a------------~~~~~H~~CF~ 43 (80)
T 1x3h_A 12 AMFSPKCGGCNRPVLENYLSA------------MDTVWHPECFV 43 (80)
T ss_dssp CCCSCBCTTTCCBCCSSCEEE------------TTEEECTTTCB
T ss_pred hhcCCccccCCCeecceeEEE------------CCCeEecCcCC
Confidence 333468999999997432211 12456999974
No 38
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.55 E-value=3.8 Score=25.37 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=18.9
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
....|.+|++.|. ++. | .. ...-||..||.
T Consensus 4 ~~~~C~~C~~~I~-~~~-~--~a--------~~~~~H~~CF~ 33 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGG-V--TY--------REQPWHKECFV 33 (70)
T ss_dssp CCCBCSSSCCBCC-SSE-E--ES--------SSSEEETTTSB
T ss_pred CCCCCcccCCeec-cce-E--EE--------CccccCCCCCc
Confidence 3467999999997 332 1 11 12345999984
No 39
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=61.96 E-value=4.5 Score=24.96 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=19.4
Q ss_pred ccccccccCcCCCCeEEEEEeecCCCCCccceEEe--cCchh
Q psy14580 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHH--IDCIL 64 (149)
Q Consensus 25 A~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH--~~Cf~ 64 (149)
..|.+|++.|.-++..|-. ...-|| ..||.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a----------~~~~wH~~~~CF~ 34 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY----------NNFSWHASTECFL 34 (65)
T ss_dssp EECTTTSSEECTTSCEEEE----------TTEEEETTTTTSB
T ss_pred CCCcCCCCeeccCceEEEE----------CCCccCCCCCCEE
Confidence 3699999999875333321 124568 88874
No 40
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=61.62 E-value=2.2 Score=31.81 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=18.6
Q ss_pred ccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 25 A~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.+|.+|++.|.-+++.+. ....+||..||.
T Consensus 120 ~kC~~C~~~I~~~~~v~~----------a~~~~~H~~CF~ 149 (182)
T 2jtn_A 120 TKCAACQLGIPPTQVVRR----------AQDFVYHLHCFA 149 (182)
T ss_dssp CCCTTTCCCCCSSCCCCE----------ETTEECCTTTCC
T ss_pred cccccCCCccCCCceEEe----------cCCCCEEeCCCc
Confidence 467778888865542211 123688999984
No 41
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=60.30 E-value=4.8 Score=27.96 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=19.5
Q ss_pred cccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 26 GCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 26 ~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.|..|++.|.-++..|.. ...-||..||.
T Consensus 68 ~C~~C~~~I~~~e~~~~a----------~~~~~H~~CF~ 96 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV----------KDKVYHLECFK 96 (131)
T ss_dssp ECTTTCCEECTTSEEEEE----------TTEEEEGGGCB
T ss_pred ChhhcCCccCccceeEee----------CCceECccCcc
Confidence 799999999876644322 12456888874
No 42
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.98 E-value=2 Score=27.60 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=12.3
Q ss_pred ccCCCccccccccCcCC
Q psy14580 20 AKTGRSGCKKCKQKIDT 36 (149)
Q Consensus 20 AKS~RA~Ck~Ck~kI~K 36 (149)
.+.--..|.+|++.|.-
T Consensus 11 ~~~~~~~C~~C~~~I~~ 27 (82)
T 2ehe_A 11 DNTFANTCAECQQLIGH 27 (82)
T ss_dssp CCCCSCBCTTTCCBCCS
T ss_pred CcccCCcCccCCCcccc
Confidence 33334589999999984
No 43
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.90 E-value=6.1 Score=25.23 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=20.9
Q ss_pred EccCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 19 RAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 19 yAKS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
|.+.--..|..|++.|. +++ |-. ...-||..||.
T Consensus 10 y~~~~~~~C~~C~~~I~-~~~-v~a----------~~~~wH~~CF~ 43 (81)
T 1v6g_A 10 YQRLYGTRCFSCDQFIE-GEV-VSA----------LGKTYHPDCFV 43 (81)
T ss_dssp GGGSCCCBCTTTCCBCC-SCC-EEE----------TTEEECTTTSS
T ss_pred HHhHhCCcCccccCEec-cce-EEE----------CCceeCccCCc
Confidence 44444468999999998 432 111 12445889984
No 44
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=58.35 E-value=5.9 Score=27.58 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.7
Q ss_pred CCccccccccCcCCCC
Q psy14580 23 GRSGCKKCKQKIDTGT 38 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGe 38 (149)
....|.+|++.|.-++
T Consensus 4 ~~~~C~~C~~~I~~~~ 19 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRF 19 (122)
T ss_dssp CCCCBSSSSSCCCSSC
T ss_pred CCCCCcccCCEeCCcE
Confidence 3468999999998664
No 45
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.86 E-value=2.8 Score=26.65 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=10.1
Q ss_pred ccccccccCcCC
Q psy14580 25 SGCKKCKQKIDT 36 (149)
Q Consensus 25 A~Ck~Ck~kI~K 36 (149)
..|.+|++.|.-
T Consensus 6 ~~C~~C~~~I~~ 17 (73)
T 1wig_A 6 SGCDSCEKYITG 17 (73)
T ss_dssp CSCSSSCCCCSS
T ss_pred CCcccCCCEecC
Confidence 579999999974
No 46
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=57.51 E-value=2.3 Score=26.14 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=18.7
Q ss_pred CccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 24 RSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 24 RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
...|.+|++.|. |++ | . . .| .-||..||.
T Consensus 5 ~~~C~~C~~~I~-~~~-~--~---a--~~---~~~H~~CF~ 33 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV-V--N---A--MG---KQWHVEHFV 33 (66)
T ss_dssp CCEETTTTEECC-SCE-E--C---C--TT---SBEETTTCB
T ss_pred CCCCcccCCEec-ceE-E--E---E--Cc---cccccCcCE
Confidence 457999999998 642 2 1 1 12 345999984
No 47
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.23 E-value=7.5 Score=24.77 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=19.5
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
....|.+|++.|. +. .|-. ...-||..||.
T Consensus 14 ~~~~C~~C~~~I~-~~-~~~a----------~~~~~H~~CF~ 43 (81)
T 2dlo_A 14 TLEKCATCSQPIL-DR-ILRA----------MGKAYHPGCFT 43 (81)
T ss_dssp SCCBCTTTCCBCC-SC-CEEE----------TTEEECTTTCB
T ss_pred CCCccccCCCeec-ce-eEEE----------CCccccHHhcC
Confidence 5678999999998 43 1211 12445999984
No 48
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=56.04 E-value=2.4 Score=29.72 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=11.4
Q ss_pred ccccccccCcCCCC
Q psy14580 25 SGCKKCKQKIDTGT 38 (149)
Q Consensus 25 A~Ck~Ck~kI~KGe 38 (149)
..|..|++.|..++
T Consensus 9 ~~C~~C~~~I~~~e 22 (123)
T 2l3k_A 9 GLCASCDKRIRAYE 22 (123)
T ss_dssp CCCSSSSCCCCTTC
T ss_pred CcccCCCCeecCCc
Confidence 37999999998654
No 49
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=54.65 E-value=3.8 Score=26.02 Aligned_cols=8 Identities=38% Similarity=1.576 Sum_probs=7.6
Q ss_pred eEEecCch
Q psy14580 56 QWHHIDCI 63 (149)
Q Consensus 56 ~WyH~~Cf 63 (149)
.|||+.|+
T Consensus 35 ~WfH~~Cv 42 (62)
T 2g6q_A 35 EWFHFSCV 42 (62)
T ss_dssp CEEETGGG
T ss_pred ccEecccC
Confidence 89999997
No 50
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=53.08 E-value=4.2 Score=25.52 Aligned_cols=8 Identities=38% Similarity=1.543 Sum_probs=7.5
Q ss_pred eEEecCch
Q psy14580 56 QWHHIDCI 63 (149)
Q Consensus 56 ~WyH~~Cf 63 (149)
.|||+.|+
T Consensus 33 ~wfH~~Cv 40 (59)
T 3c6w_A 33 EWFHFACV 40 (59)
T ss_dssp CEEETGGG
T ss_pred CCEecccC
Confidence 69999997
No 51
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.88 E-value=8.1 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.2
Q ss_pred CccccccccCcCCC
Q psy14580 24 RSGCKKCKQKIDTG 37 (149)
Q Consensus 24 RA~Ck~Ck~kI~KG 37 (149)
-..|.+|++.|.-+
T Consensus 3 ~~~C~~C~~~I~~~ 16 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR 16 (114)
T ss_dssp CBCBSSSCSCBCSS
T ss_pred CCCCcCCCCeeCCc
Confidence 35799999999844
No 52
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=52.62 E-value=6.7 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=19.5
Q ss_pred cccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 26 GCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 26 ~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.|..|++.|..++..|.. ...-||..||.
T Consensus 71 ~C~~C~~~I~~~e~~i~a----------~~~~~H~~CF~ 99 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA----------QGNVYHLKCFT 99 (188)
T ss_dssp ECTTTCCEECTTSEEEEE----------TTEEECGGGCB
T ss_pred ccccCCCccccCcEEEEc----------CCCEEeCCCCe
Confidence 699999999876644422 12466888874
No 53
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.40 E-value=4.8 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=18.2
Q ss_pred ccccccccCcCCCCeEEEEEeecCCCCCccceEEecCch
Q psy14580 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63 (149)
Q Consensus 25 A~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf 63 (149)
..|..|++.-..+..=|+- + .-..|||..|+
T Consensus 7 ~~C~~C~~~~~~~~~mI~C-------d-~C~~WfH~~Cv 37 (64)
T 1we9_A 7 GQCGACGESYAADEFWICC-------D-LCEMWFHGKCV 37 (64)
T ss_dssp CCCSSSCCCCCSSSCEEEC-------S-SSCCEEETTTT
T ss_pred CCCCCCCCccCCCCCEEEc-------c-CCCCCCCcccc
Confidence 4576776655434322221 1 23689999997
No 54
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.83 E-value=5.1 Score=25.13 Aligned_cols=8 Identities=38% Similarity=1.543 Sum_probs=7.5
Q ss_pred eEEecCch
Q psy14580 56 QWHHIDCI 63 (149)
Q Consensus 56 ~WyH~~Cf 63 (149)
.|||+.|+
T Consensus 34 ~wfH~~Cv 41 (60)
T 2vnf_A 34 EWFHFACV 41 (60)
T ss_dssp CEEETGGG
T ss_pred ceEehhcC
Confidence 79999997
No 55
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=49.55 E-value=4.4 Score=26.44 Aligned_cols=8 Identities=38% Similarity=1.543 Sum_probs=7.5
Q ss_pred eEEecCch
Q psy14580 56 QWHHIDCI 63 (149)
Q Consensus 56 ~WyH~~Cf 63 (149)
.|||+.|+
T Consensus 40 ~wfH~~Cv 47 (71)
T 1wen_A 40 EWFHFACV 47 (71)
T ss_dssp CCEETTTT
T ss_pred ccEecccC
Confidence 79999997
No 56
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=49.50 E-value=15 Score=22.02 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=8.6
Q ss_pred cceEEecCch
Q psy14580 54 MKQWHHIDCI 63 (149)
Q Consensus 54 ~~~WyH~~Cf 63 (149)
-..|||..|+
T Consensus 25 C~~WfH~~Cv 34 (52)
T 2kgg_A 25 CDEWFHQVCV 34 (52)
T ss_dssp TCCEEETTTT
T ss_pred CCccCccccc
Confidence 4689999997
No 57
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=47.64 E-value=6.1 Score=25.19 Aligned_cols=30 Identities=20% Similarity=0.671 Sum_probs=17.9
Q ss_pred ccccccccCcCCCCeEEEEEeecCCCCC-ccceEEecCch
Q psy14580 25 SGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCI 63 (149)
Q Consensus 25 A~Ck~Ck~kI~KGeLRIG~~v~~~~~~g-~~~~WyH~~Cf 63 (149)
-.| -|+.....|. ++.= ++ .-..|||..|+
T Consensus 11 v~C-~C~~~~~~g~-----mI~C---D~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-----MIQC---EDQRCQVWQHLNCV 41 (68)
T ss_dssp ECC-TTCCCSCCSC-----EEEC---SCTTTCEEEETTTS
T ss_pred EEe-ECCCCcCCCC-----EEEE---CCCCCCCeEchhhC
Confidence 456 4776655443 2221 32 45689999997
No 58
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.03 E-value=7 Score=25.12 Aligned_cols=31 Identities=39% Similarity=0.784 Sum_probs=18.8
Q ss_pred CccccccccCcCCCCeEEEEEeecCCCCCccceEEecCch
Q psy14580 24 RSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63 (149)
Q Consensus 24 RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf 63 (149)
...| .|+..-..|++-|+- + ....|||..|+
T Consensus 16 ~~~C-~C~~~~~~g~~mI~C-------d-~C~~W~H~~Cv 46 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLAC-------D-GCGVWHHTRCI 46 (72)
T ss_dssp EECC-TTCCCSCCSSCEEEC-------S-SSCEEEETTTT
T ss_pred ceEe-eCCCccCCCCcEEEC-------C-CCCCccCCeee
Confidence 3457 477654445444432 1 24689999997
No 59
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=44.96 E-value=7.1 Score=23.55 Aligned_cols=10 Identities=30% Similarity=1.056 Sum_probs=8.4
Q ss_pred cceEEecCch
Q psy14580 54 MKQWHHIDCI 63 (149)
Q Consensus 54 ~~~WyH~~Cf 63 (149)
-..|||..|+
T Consensus 24 C~~W~H~~Cv 33 (52)
T 3o7a_A 24 CHTWIHLSCA 33 (52)
T ss_dssp TCCEEETTTT
T ss_pred CCcccccccc
Confidence 3579999997
No 60
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=43.86 E-value=9.4 Score=28.52 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=21.2
Q ss_pred CCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 22 TGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 22 S~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
.+...|.+|++.|..+++-.+ ...-||..||.
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a-----------~g~~wH~~CF~ 36 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQC-----------EGSSFHKSCFL 36 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEE-----------TTEEECTTTCB
T ss_pred CCCCcCccCCCeecceeEEEe-----------CCceecCCCCc
Confidence 345689999999987763211 12466888874
No 61
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=42.96 E-value=6.1 Score=27.14 Aligned_cols=8 Identities=38% Similarity=1.489 Sum_probs=7.5
Q ss_pred eEEecCch
Q psy14580 56 QWHHIDCI 63 (149)
Q Consensus 56 ~WyH~~Cf 63 (149)
.|||+.|+
T Consensus 50 eWfH~~CV 57 (90)
T 2jmi_A 50 EWFHYGCV 57 (90)
T ss_dssp SCEETTTS
T ss_pred ccCcCccC
Confidence 79999997
No 62
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.14 E-value=5.3 Score=25.89 Aligned_cols=10 Identities=40% Similarity=1.228 Sum_probs=8.6
Q ss_pred cceEEecCch
Q psy14580 54 MKQWHHIDCI 63 (149)
Q Consensus 54 ~~~WyH~~Cf 63 (149)
...|||..|+
T Consensus 36 C~~WfH~~Cv 45 (76)
T 1wem_A 36 CEEWFHGDCV 45 (76)
T ss_dssp SCCEEEHHHH
T ss_pred CCCcEeCeEE
Confidence 4689999997
No 63
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.48 E-value=6 Score=27.21 Aligned_cols=8 Identities=38% Similarity=1.543 Sum_probs=7.5
Q ss_pred eEEecCch
Q psy14580 56 QWHHIDCI 63 (149)
Q Consensus 56 ~WyH~~Cf 63 (149)
.|||+.|+
T Consensus 60 ~WfH~~CV 67 (91)
T 1weu_A 60 EWFHFACV 67 (91)
T ss_dssp CCCCSTTT
T ss_pred CCEecccC
Confidence 79999997
No 64
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.40 E-value=5 Score=26.06 Aligned_cols=9 Identities=33% Similarity=1.246 Sum_probs=7.9
Q ss_pred ceEEecCch
Q psy14580 55 KQWHHIDCI 63 (149)
Q Consensus 55 ~~WyH~~Cf 63 (149)
..|||+.|+
T Consensus 29 ~~WfH~~Cv 37 (70)
T 1x4i_A 29 IEWFHYGCV 37 (70)
T ss_dssp CCCEEHHHH
T ss_pred ccCCccccc
Confidence 379999997
No 65
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=39.22 E-value=14 Score=25.38 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=13.6
Q ss_pred CccccccccCcCCCCeEE
Q psy14580 24 RSGCKKCKQKIDTGTVRI 41 (149)
Q Consensus 24 RA~Ck~Ck~kI~KGeLRI 41 (149)
-.+|.+|++.|..++..|
T Consensus 63 ~~~C~~C~~~I~~~~~~~ 80 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRV 80 (126)
T ss_dssp CCBCTTTCSBCCTTSCEE
T ss_pred CccCcccCCcCCcCceEE
Confidence 457999999998765544
No 66
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=38.22 E-value=6.5 Score=25.28 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=18.5
Q ss_pred CccccccccCcCCCCeEEEEEeecCCCCCccceEEecCch
Q psy14580 24 RSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63 (149)
Q Consensus 24 RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf 63 (149)
...|..|+..-. |+.-|.- + ....|||..|+
T Consensus 18 ~~~C~~C~~~~~-~~~mi~C-------D-~C~~wfH~~Cv 48 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGC-------D-DCDDWYHWPCV 48 (75)
T ss_dssp EECBTTTTBCCS-SCCEEEC-------S-SSSSEEEHHHH
T ss_pred CcCCCCCCCCCC-CCCEEEc-------C-CCCcccccccC
Confidence 345888876532 3322321 2 24689999997
No 67
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.91 E-value=8.9 Score=24.35 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=12.4
Q ss_pred EccCCCccccccccCcC
Q psy14580 19 RAKTGRSGCKKCKQKID 35 (149)
Q Consensus 19 yAKS~RA~Ck~Ck~kI~ 35 (149)
|.+.--..|.+|++.|.
T Consensus 10 y~~~~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 10 YWGKFGEFCHGCSLLMT 26 (81)
T ss_dssp SSCCSSCBCTTTCCBCC
T ss_pred HhhhcCCcCccCCCCcC
Confidence 33333458999999998
No 68
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.76 E-value=7.2 Score=25.51 Aligned_cols=10 Identities=30% Similarity=1.072 Sum_probs=8.5
Q ss_pred cceEEecCch
Q psy14580 54 MKQWHHIDCI 63 (149)
Q Consensus 54 ~~~WyH~~Cf 63 (149)
...|||..|+
T Consensus 33 C~~WfH~~Cv 42 (79)
T 1wep_A 33 CQDWFHGSCV 42 (79)
T ss_dssp TCCEEEHHHH
T ss_pred CCCcEEeeec
Confidence 3589999997
No 69
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=36.59 E-value=11 Score=24.15 Aligned_cols=10 Identities=30% Similarity=1.056 Sum_probs=8.5
Q ss_pred cceEEecCch
Q psy14580 54 MKQWHHIDCI 63 (149)
Q Consensus 54 ~~~WyH~~Cf 63 (149)
...|||..|+
T Consensus 39 C~~WfH~~Cv 48 (68)
T 3o70_A 39 CHTWIHLSCA 48 (68)
T ss_dssp TCCEEETTTT
T ss_pred CCcccccccc
Confidence 3589999997
No 70
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.24 E-value=7.8 Score=25.35 Aligned_cols=33 Identities=21% Similarity=0.646 Sum_probs=18.9
Q ss_pred CCCccccccccCcCCCCeEEEEEeecCCCCC-ccceEEecCch
Q psy14580 22 TGRSGCKKCKQKIDTGTVRIAKMGYNPFGSG-KMKQWHHIDCI 63 (149)
Q Consensus 22 S~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g-~~~~WyH~~Cf 63 (149)
.....| .|+..-..| +-|+- ++ ....|||..|+
T Consensus 14 ~~~~~C-iC~~~~~~g-~MI~C-------D~~~C~~W~H~~CV 47 (78)
T 1wew_A 14 EIKVRC-VCGNSLETD-SMIQC-------EDPRCHVWQHVGCV 47 (78)
T ss_dssp CCCCCC-SSCCCCCCS-CEEEC-------SSTTTCCEEEHHHH
T ss_pred CCCEEe-ECCCcCCCC-CEEEE-------CCccCCccccCEEE
Confidence 456677 587763333 22221 21 34569999997
No 71
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=34.04 E-value=13 Score=21.92 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=9.0
Q ss_pred cceEEecCchh
Q psy14580 54 MKQWHHIDCIL 64 (149)
Q Consensus 54 ~~~WyH~~Cf~ 64 (149)
-..|||+.|+-
T Consensus 21 C~~~~H~~Cl~ 31 (51)
T 1f62_A 21 CNKAFHLFCLR 31 (51)
T ss_dssp TCCEECHHHHC
T ss_pred CChhhCcccCC
Confidence 46899999984
No 72
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=33.51 E-value=8.7 Score=24.88 Aligned_cols=10 Identities=40% Similarity=1.129 Sum_probs=8.4
Q ss_pred cceEEecCch
Q psy14580 54 MKQWHHIDCI 63 (149)
Q Consensus 54 ~~~WyH~~Cf 63 (149)
...|||..|+
T Consensus 31 C~~WfH~~Cv 40 (75)
T 3kqi_A 31 CKDWFHGSCV 40 (75)
T ss_dssp TCCEEEHHHH
T ss_pred CCCCEecccc
Confidence 3579999997
No 73
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=31.82 E-value=16 Score=24.99 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=9.3
Q ss_pred cceEEecCchh
Q psy14580 54 MKQWHHIDCIL 64 (149)
Q Consensus 54 ~~~WyH~~Cf~ 64 (149)
...|||..|+-
T Consensus 48 C~~w~H~~C~~ 58 (98)
T 2lv9_A 48 CSVWQHIDCMG 58 (98)
T ss_dssp TCBEEETTTTT
T ss_pred CCCcCcCcCCC
Confidence 57899999984
No 74
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.07 E-value=18 Score=21.97 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=19.0
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+-..|..|+.. |.|-+- + .-..|||+.|+-
T Consensus 8 ~~~~C~vC~~~---g~ll~C--------d-~C~~~~H~~Cl~ 37 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMC--------D-TCSRVYHLDCLD 37 (56)
T ss_dssp SCCSCSSSCCS---SCCEEC--------S-SSSCEECSSSSS
T ss_pred CCCCCccCCCC---CeEEEc--------C-CCCcceECccCC
Confidence 44678888763 333221 2 346899999984
No 75
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=25.95 E-value=38 Score=26.76 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=27.3
Q ss_pred cceEEecCchhhHHHhhhhcccccCccCCCCCcCCCCHHHHHHHHHH
Q psy14580 54 MKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSR 100 (149)
Q Consensus 54 ~~~WyH~~Cf~~~~~k~r~t~k~i~~~edI~G~~~L~~eDQ~~I~~~ 100 (149)
..-|++..|....-.+ . .|+=...|+||.+|+-+||-.+.+.
T Consensus 75 ~~~~~~~~~~~~~~v~--~---iVewAK~iPgF~~L~~~DQi~LLk~ 116 (273)
T 3vi8_A 75 VRIFHCCQCTSVETVT--E---LTEFAKAIPGFANLDLNDQVTLLKY 116 (273)
T ss_dssp HHHHHHHHHHHHHHHH--H---HHHHGGGSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--H---HHHHHccCcCcccCCHHHHHHHHHH
Confidence 3468888886542111 0 0111356999999999999988663
No 76
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.87 E-value=31 Score=22.82 Aligned_cols=39 Identities=21% Similarity=0.532 Sum_probs=26.2
Q ss_pred CCCccccccccCcCCCCeEEEEEeecCCCCCccceEEec-CchhhHHHh
Q psy14580 22 TGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI-DCILEVFKK 69 (149)
Q Consensus 22 S~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~-~Cf~~~~~k 69 (149)
..+|.|+-|++.|..|. ....|...-|.|+ .|..+.+.+
T Consensus 26 ~~~A~Ck~C~k~ls~g~---------~s~~GTS~L~rHL~~~H~~e~~~ 65 (76)
T 2djr_A 26 NQYATCRLCGRQVSRGP---------GVNVGTTALWKHLKSMHREELEK 65 (76)
T ss_dssp CSCEEESSSCCBCCCCS---------SCCSSSCHHHHHHHHTTHHHHHH
T ss_pred CCEEECCCCCCccCCCC---------CCCCchHHHHHHHHHHCHHHHHh
Confidence 45899999999986441 0224556779997 676655543
No 77
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=24.51 E-value=36 Score=26.64 Aligned_cols=19 Identities=32% Similarity=0.756 Sum_probs=16.7
Q ss_pred CCCCCcCCCCHHHHHHHHH
Q psy14580 81 DDMGGWDDLTPEDQEEVLS 99 (149)
Q Consensus 81 edI~G~~~L~~eDQ~~I~~ 99 (149)
..|+||.+|.-+||-.+.+
T Consensus 73 K~iP~F~~L~~~DQi~LLk 91 (257)
T 3v3e_B 73 EKIPGFAELSPADQDLLLE 91 (257)
T ss_dssp HTSTTGGGSCHHHHHHHHH
T ss_pred HcCCCcccCCHHHHHHHHH
Confidence 4699999999999998865
No 78
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=23.79 E-value=23 Score=22.21 Aligned_cols=32 Identities=16% Similarity=0.492 Sum_probs=20.1
Q ss_pred cCCCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 21 KTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 21 KS~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
..+-..|..|+.. |+|-+- + .-..|||+.|+-
T Consensus 5 ~~~~~~C~vC~~~---g~ll~C--------D-~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICC--------D-GCPRAFHLACLS 36 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEEC--------S-SCCCEECTTTSS
T ss_pred CCCCCCCccCCCC---CCEEEc--------C-CCChhhcccccC
Confidence 3456678888753 433221 2 256899999984
No 79
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.79 E-value=23 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=18.9
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCIL 64 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~ 64 (149)
+-..|..|+.. |.|-+- + .-..|||+.|+-
T Consensus 4 ~~~~C~vC~~~---g~ll~C--------d-~C~~~fH~~Cl~ 33 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMC--------D-TCSRVYHLDCLD 33 (60)
T ss_dssp CCSSCTTTCCC---SSCEEC--------S-SSSCEECGGGSS
T ss_pred CCCCCcCCCCC---CcEEEc--------C-CCCcCEECCcCC
Confidence 44678888763 433221 2 346899999984
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=23.35 E-value=35 Score=25.99 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=19.1
Q ss_pred cccccccCcCCCCe---EEEEEeecCCCCCccceEEecCch
Q psy14580 26 GCKKCKQKIDTGTV---RIAKMGYNPFGSGKMKQWHHIDCI 63 (149)
Q Consensus 26 ~Ck~Ck~kI~KGeL---RIG~~v~~~~~~g~~~~WyH~~Cf 63 (149)
.|..|++....+++ =|+- .....|||..|.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqC--------d~C~~W~H~~Cv 36 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQC--------GKCDRWVHSKCE 36 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEEC--------TTTCCEEEGGGS
T ss_pred cCCCCcCccCCcccCCCeEEC--------CCCCcccchhcc
Confidence 48888777666653 1211 134679999996
No 81
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=22.79 E-value=33 Score=26.89 Aligned_cols=20 Identities=10% Similarity=0.421 Sum_probs=17.1
Q ss_pred CCCCCcCCCCHHHHHHHHHH
Q psy14580 81 DDMGGWDDLTPEDQEEVLSR 100 (149)
Q Consensus 81 edI~G~~~L~~eDQ~~I~~~ 100 (149)
..|+||.+|+.+||-.+.+.
T Consensus 62 K~iPgF~~L~~~DQi~LLK~ 81 (244)
T 3gyt_A 62 KRLGAFNEISEAGKFSLLKG 81 (244)
T ss_dssp HTCGGGGGSCHHHHHHHHHH
T ss_pred ccCCCcccCCHHHHHHHHHH
Confidence 56999999999999888643
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=21.87 E-value=19 Score=22.32 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=19.2
Q ss_pred CCccccccccCcCCCCeEEEEEeecCCCCCccceEEecCchhh
Q psy14580 23 GRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILE 65 (149)
Q Consensus 23 ~RA~Ck~Ck~kI~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~~ 65 (149)
+...|..|+.. |+|-+- + .-..|||+.|+-.
T Consensus 10 ~~~~C~vC~~~---g~ll~C--------D-~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILC--------D-TCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC---SSEEEC--------S-SSSCEEEHHHHCT
T ss_pred CCCCCccCCCC---CcEEEC--------C-CCChhhhhhccCC
Confidence 45678888752 333221 2 3467999999843
No 83
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=21.49 E-value=55 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.2
Q ss_pred CCCCCcCCCCHHHHHHHHHH
Q psy14580 81 DDMGGWDDLTPEDQEEVLSR 100 (149)
Q Consensus 81 edI~G~~~L~~eDQ~~I~~~ 100 (149)
..|+||.+|+.+||..+.+.
T Consensus 58 K~ip~F~~L~~~DQ~~LLk~ 77 (235)
T 2nxx_A 58 KLVPHFTSLPLTDQVQLLRA 77 (235)
T ss_dssp HHSTTSTTSCHHHHHHHHHH
T ss_pred HcCCChhhCCHHHHHHHHHH
Confidence 45999999999999988654
No 84
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.77 E-value=71 Score=19.54 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=20.9
Q ss_pred CCCccccccccCc--CCCCeEEEEEeecCCCCCccceEEecCchhh
Q psy14580 22 TGRSGCKKCKQKI--DTGTVRIAKMGYNPFGSGKMKQWHHIDCILE 65 (149)
Q Consensus 22 S~RA~Ck~Ck~kI--~KGeLRIG~~v~~~~~~g~~~~WyH~~Cf~~ 65 (149)
.+-..|..|+..- ..+.|-+- + .-..+||..|+-.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~C--------d-~C~~~~H~~C~~p 40 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVIC--------D-KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEEC--------S-SSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEEC--------C-CCChHHHhhhCCC
Confidence 4556788887542 22333222 1 3468999999753
No 85
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=20.55 E-value=21 Score=26.10 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHchhhh
Q psy14580 87 DDLTPEDQEEVLSRFPESL 105 (149)
Q Consensus 87 ~~L~~eDQ~~I~~~~~~~~ 105 (149)
..|+.++++.++..|..+.
T Consensus 67 ~~l~~~~~~~l~~il~~l~ 85 (174)
T 2ri7_A 67 TPLTEKDYEGLKRVLRSLQ 85 (174)
T ss_dssp SBCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4688999999999888875
No 86
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=20.31 E-value=49 Score=25.48 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.0
Q ss_pred CCCCCcCCCCHHHHHHHHHH
Q psy14580 81 DDMGGWDDLTPEDQEEVLSR 100 (149)
Q Consensus 81 edI~G~~~L~~eDQ~~I~~~ 100 (149)
..|+||.+|+.+||..+.+.
T Consensus 77 K~iP~F~~L~~~DQi~LLk~ 96 (248)
T 3l0l_A 77 KRLSGFMELCQNDQIVLLKA 96 (248)
T ss_dssp HHSTTGGGSCHHHHHHHHHH
T ss_pred hcCCCcccCCHHHHHHHHHH
Confidence 46999999999999888653
No 87
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=20.30 E-value=50 Score=25.04 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.6
Q ss_pred cCCCCCcCCCCHHHHHHHHHH
Q psy14580 80 VDDMGGWDDLTPEDQEEVLSR 100 (149)
Q Consensus 80 ~edI~G~~~L~~eDQ~~I~~~ 100 (149)
...|+||.+|+.+||..+.+.
T Consensus 64 aK~lp~F~~L~~~DQ~~LLk~ 84 (236)
T 1fcy_A 64 AKRLPGFTGLSIADQITLLKA 84 (236)
T ss_dssp HHTSTTGGGSCHHHHHHHHHH
T ss_pred HhcCCCcccCCHHHHHHHHHH
Confidence 356999999999999888654
No 88
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=20.27 E-value=55 Score=27.54 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.3
Q ss_pred CCCCCcCCCCHHHHHHHHHH
Q psy14580 81 DDMGGWDDLTPEDQEEVLSR 100 (149)
Q Consensus 81 edI~G~~~L~~eDQ~~I~~~ 100 (149)
..|+||.+|..+||-.+++.
T Consensus 243 K~iP~F~~L~~~DQi~LLk~ 262 (419)
T 3dzy_D 243 KSIPGFVNLDLNDQVTLLKY 262 (419)
T ss_dssp TTSTTTTTSCHHHHHHHHHH
T ss_pred ccCCCcccCCHHHHHHHHHH
Confidence 46999999999999988753
Done!